genome.fa.s6227.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006227.1 Hibiscus syriacus cultivar Beakdansim tig00014842_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68145

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6268--6313	24	1.9	24	100	0	92	52	8	13	26	1.69
13546--13571	6	4.3	6	100	0	52	0	15	30	53	1.42
19308--19346	21	1.9	21	89	5	62	33	0	12	53	1.39
19340--19371	16	2.0	16	93	0	55	34	0	18	46	1.49
20890--20940	19	2.7	19	96	0	93	25	25	35	13	1.93
22525--22616	24	3.8	24	81	5	114	41	7	6	44	1.59
22607--22651	21	2.1	22	84	12	58	51	8	2	37	1.46
22587--22717	60	2.2	60	91	1	219	48	9	4	38	1.56
22598--22676	11	6.8	11	70	16	52	48	11	3	36	1.57
22622--22683	24	2.8	21	69	21	54	51	9	3	35	1.51
22667--22695	15	1.9	15	100	0	58	55	10	0	34	1.34
23466--23496	14	2.2	14	100	0	62	51	22	0	25	1.48
25315--25394	36	2.2	36	91	6	128	45	8	0	46	1.34
28009--28033	2	12.5	2	100	0	50	52	0	0	48	1.00
28297--28351	21	2.6	21	85	5	76	18	25	18	38	1.93
28379--28513	20	6.7	20	76	7	103	34	23	17	25	1.96
28376--28513	41	3.4	41	82	6	181	35	23	16	24	1.95
28680--28723	22	2.0	22	90	0	70	20	43	15	20	1.88
28973--29020	20	2.4	20	85	0	60	18	14	25	41	1.88
28988--29030	20	2.2	20	95	0	77	9	16	20	53	1.70
29167--29221	25	2.2	26	77	9	60	20	10	18	50	1.76
30350--30397	18	2.7	18	93	0	87	27	45	12	14	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30932--30977	20	2.3	20	88	0	65	36	26	21	15	1.93
30971--31062	33	2.8	33	91	0	157	46	19	19	14	1.83
31062--31142	20	4.1	20	96	0	144	16	27	24	32	1.96
31068--31167	20	5.1	19	89	4	74	19	22	25	34	1.96
31510--31565	21	2.7	20	72	8	58	25	39	14	21	1.91
31510--31589	42	1.9	42	89	5	126	22	42	15	20	1.88
33181--33264	19	4.7	19	88	11	133	46	17	21	14	1.84
33168--33264	38	2.8	33	82	14	131	45	17	22	14	1.85
33283--33338	20	2.8	20	97	0	103	14	19	23	42	1.88
33681--33743	20	3.2	20	95	0	108	28	20	25	25	1.99
34428--34481	24	2.2	24	90	0	81	22	16	20	40	1.91
34656--34680	12	2.1	12	100	0	50	72	0	28	0	0.86
36928--37000	20	3.6	20	67	17	60	35	23	17	23	1.95
36994--37123	19	7.6	19	66	23	83	44	19	23	12	1.84
36994--37120	33	3.8	33	92	0	209	44	18	23	12	1.84
37120--37195	19	4.3	19	79	16	83	11	18	23	46	1.82
37160--37203	19	2.3	19	88	0	61	15	20	18	45	1.85
37302--37338	14	2.6	14	91	0	65	45	21	0	32	1.52
39454--40192	363	2.0	363	97	0	1388	24	22	29	23	1.99
41354--41394	20	2.0	20	100	0	82	48	14	24	12	1.78
41419--41545	34	3.8	34	88	1	168	11	21	22	44	1.84
41449--41551	20	5.8	19	66	24	73	12	23	20	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42096--42186	20	4.5	20	80	2	110	20	19	18	40	1.91
42073--42232	20	7.9	20	72	12	87	26	18	20	34	1.96
42219--42295	21	3.7	21	75	6	68	20	19	19	40	1.92
42308--42375	21	3.2	21	91	6	111	36	14	27	20	1.92
42305--42404	42	2.4	41	79	11	105	36	15	26	23	1.93
48182--48208	10	2.7	10	100	0	54	0	29	0	70	0.88
58525--58608	11	7.5	11	68	17	57	48	1	10	39	1.46
58569--58615	23	2.1	22	88	4	67	51	2	8	38	1.45
60013--60081	36	1.9	36	93	0	120	30	13	40	15	1.86
60180--60231	2	27.5	2	81	11	65	50	0	0	50	1.00
61830--61888	18	3.1	18	71	26	50	69	11	0	18	1.18
63826--63870	15	3.0	15	83	0	54	51	4	0	44	1.21

Tables:   1

The End!