genome.fa.s6228.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006228.1 Hibiscus syriacus cultivar Beakdansim tig00014843_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79864

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4548--4736	28	6.8	28	80	6	188	34	2	14	48	1.56
5673--6004	113	2.9	113	86	4	452	21	15	31	32	1.94
12726--12804	32	2.5	32	82	0	104	27	17	22	31	1.97
13906--13968	26	2.4	26	83	2	81	39	14	1	44	1.55
15529--15994	112	4.1	112	87	1	671	45	13	13	27	1.81
15529--15994	227	2.1	224	88	1	689	45	13	13	27	1.81
15865--16321	182	2.5	182	93	0	745	43	14	15	26	1.85
17379--17409	2	15.5	2	100	0	62	51	0	0	48	1.00
19740--19806	2	34.5	2	76	5	57	43	1	5	49	1.36
19736--19806	30	2.5	30	84	11	105	45	1	5	47	1.35
20003--20036	18	1.9	18	88	5	52	29	0	2	67	1.05
20198--20227	4	7.5	4	100	0	60	23	0	0	76	0.78
20170--20229	31	1.9	32	83	16	81	20	0	6	73	1.05
20170--20231	24	2.4	28	79	17	71	20	0	6	72	1.06
20272--20321	21	2.4	21	81	15	59	6	14	2	78	1.03
20245--20384	9	14.7	9	68	20	63	10	12	2	75	1.14
24115--24377	95	2.7	95	82	5	314	34	15	18	31	1.92
27341--27380	14	2.9	14	100	0	80	30	15	15	40	1.87
28499--28614	36	3.2	36	84	7	146	31	18	11	38	1.86
28627--28924	36	8.4	36	76	8	261	24	20	13	41	1.88
28703--28767	21	3.4	21	66	24	61	23	21	12	43	1.86
28505--28924	174	2.4	172	88	2	626	25	19	13	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28701--28889	102	1.9	102	86	4	274	25	20	12	41	1.88
28852--28910	21	3.1	20	68	27	56	25	20	15	38	1.91
29398--29444	2	24.5	2	80	8	53	44	2	2	51	1.25
30753--30804	19	2.6	19	74	17	52	15	9	0	75	1.05
30901--31058	21	7.8	20	71	7	77	39	25	16	18	1.91
31025--31210	60	3.1	60	82	0	237	36	25	18	19	1.95
31025--31210	20	9.2	20	80	5	205	36	25	18	19	1.95
31601--31671	33	2.2	33	92	0	115	11	22	18	47	1.80
31751--31856	21	5.6	20	69	16	82	46	17	23	12	1.82
31744--31860	41	3.1	38	78	14	127	47	16	24	11	1.80
31811--31867	14	3.7	14	72	20	51	45	22	22	8	1.80
31803--31872	33	2.1	33	97	0	131	48	20	22	8	1.76
31809--31883	33	2.3	33	92	0	123	48	24	20	8	1.76
31879--31976	19	5.7	19	70	22	90	10	23	22	43	1.83
31901--31990	14	5.7	14	72	23	72	8	24	23	43	1.82
31884--31998	33	3.5	33	97	0	221	9	23	20	46	1.80
34666--34895	20	11.5	20	84	3	221	20	18	24	36	1.95
35090--35127	13	2.9	13	96	0	67	15	0	10	73	1.09
35088--35146	15	3.8	15	71	22	50	16	0	6	76	1.00
35177--35209	17	1.9	17	100	0	66	15	6	0	78	0.93
35173--35234	17	3.7	16	83	10	54	12	9	1	75	1.11
35166--35305	9	15.2	9	72	18	92	11	12	2	74	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41472--41516	20	2.2	20	92	0	72	26	24	11	37	1.89
44390--44414	2	12.5	2	100	0	50	52	0	0	48	1.00
46294--46340	15	3.1	16	85	8	55	42	0	2	55	1.12
46329--46370	18	2.3	19	80	12	52	28	2	0	69	1.01
51989--52014	3	8.7	3	100	0	52	69	0	30	0	0.89
53270--53297	14	2.0	14	100	0	56	50	0	0	50	1.00
75540--75611	31	2.3	31	95	0	135	36	29	4	30	1.76
76238--76287	26	1.9	26	84	8	66	32	20	26	22	1.98

Tables:   1

The End!