genome.fa.s6229.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006229.1 Hibiscus syriacus cultivar Beakdansim tig00014844_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99934

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7198--7258	31	2.0	31	100	0	122	40	9	3	45	1.53
11460--11495	16	2.2	17	90	5	56	50	2	0	47	1.15
13849--13881	11	3.0	11	83	16	50	9	18	0	72	1.10
15274--15354	41	2.0	41	82	2	99	28	9	22	39	1.86
15704--15760	21	2.9	19	82	10	69	49	21	8	21	1.76
19497--19659	41	4.0	41	84	1	220	34	17	20	28	1.95
19497--19659	81	2.0	82	86	1	229	34	17	20	28	1.95
19762--19872	41	2.7	41	88	1	152	37	13	20	27	1.91
19762--19906	41	3.6	41	82	4	116	39	15	18	26	1.90
20713--21165	43	10.3	43	78	6	288	30	13	20	35	1.91
20713--21165	87	5.2	87	74	5	342	30	13	20	35	1.91
20730--21088	177	2.0	174	80	3	389	31	13	18	36	1.90
24820--24949	23	5.8	23	72	8	90	17	25	22	34	1.96
27088--27120	3	10.7	3	93	6	57	0	33	0	66	0.92
28537--28650	23	5.0	23	78	3	106	18	26	21	33	1.96
30808--30837	3	9.7	3	92	7	51	0	33	0	66	0.92
32253--32374	23	5.5	22	71	11	68	18	20	23	36	1.95
32473--32501	15	1.9	15	100	0	58	58	6	13	20	1.58
49771--49808	19	2.0	19	94	0	67	26	21	7	44	1.79
52228--52320	38	2.4	38	90	0	141	44	6	37	11	1.67
52228--52331	38	2.8	38	86	2	122	48	5	35	10	1.62
54601--54645	12	3.7	12	82	11	56	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54605--54645	19	2.2	19	86	8	57	56	0	0	43	0.99
54955--55695	105	7.0	105	97	0	1374	21	17	25	34	1.96
54955--55695	211	3.5	211	98	0	1378	21	17	25	34	1.96
56467--56493	14	1.9	14	100	0	54	0	0	11	88	0.50
56468--56505	14	2.8	14	88	4	51	2	2	7	86	0.74
65944--65968	13	1.9	13	100	0	50	80	8	8	4	1.03
67222--67261	2	20.0	2	100	0	80	50	0	0	50	1.00
68402--68451	2	26.5	2	80	11	61	54	0	0	46	1.00
73375--73418	19	2.4	19	82	14	56	15	11	20	52	1.74
74392--74444	2	26.5	2	100	0	106	50	0	0	49	1.00
82907--82988	42	2.0	42	83	7	105	21	21	23	32	1.98
82909--83735	260	3.2	256	82	6	927	33	15	16	34	1.90
85781--85816	13	2.5	15	86	13	58	36	0	5	58	1.22
87376--87409	17	1.9	18	94	5	61	17	0	2	79	0.86
92671--92785	39	2.9	39	76	5	115	17	26	22	33	1.96
92993--93032	18	2.2	18	100	0	80	32	25	15	27	1.95
96971--97089	39	3.1	39	81	3	143	19	26	21	32	1.97
97415--97487	36	2.0	37	83	5	94	19	6	19	54	1.65
98143--98175	17	1.9	17	93	0	57	33	6	15	45	1.70

Tables:   1

The End!