genome.fa.s6230.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006230.1 Hibiscus syriacus cultivar Beakdansim tig00014847_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103464

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5974--6034	12	5.0	12	71	11	52	59	1	1	37	1.17
5976--6052	37	2.1	36	83	13	95	58	2	1	37	1.20
7349--7397	23	2.2	22	81	3	53	57	2	2	38	1.22
11177--11202	2	13.0	2	100	0	52	50	0	0	50	1.00
24973--25021	18	2.7	18	87	3	71	48	4	46	0	1.20
27202--27231	11	2.7	11	94	0	51	60	10	0	30	1.30
27351--27487	68	2.0	67	88	4	204	40	11	17	30	1.85
28017--28144	60	2.1	61	82	2	152	35	16	16	32	1.91
38538--38581	19	2.3	19	100	0	88	31	22	20	25	1.98
38538--38588	19	2.7	19	93	0	75	29	23	21	25	1.99
38662--38731	21	3.3	20	72	21	63	20	20	27	32	1.97
38662--38789	42	3.0	42	91	0	202	21	19	22	36	1.95
38681--38789	21	5.2	21	73	16	100	20	19	22	38	1.93
38694--38764	19	3.5	19	76	14	70	22	21	22	33	1.97
40230--40301	29	2.5	29	81	0	81	20	40	23	15	1.91
40500--40556	29	2.0	29	85	0	78	17	33	26	22	1.96
40877--40960	26	3.3	26	94	1	143	45	8	38	8	1.65
40959--40985	12	2.2	12	100	0	54	59	0	40	0	0.98
41443--41473	15	2.1	14	94	5	53	38	0	6	54	1.26
43709--43928	21	10.5	21	80	9	254	30	24	21	23	1.99
43709--43928	42	5.3	42	88	5	304	30	24	21	23	1.99
44606--44657	24	2.2	24	82	0	59	9	15	25	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44627--44657	14	2.2	14	100	0	62	6	12	22	58	1.58
44616--44677	24	2.6	24	92	0	97	11	12	19	56	1.66
45402--45476	10	7.7	10	67	21	52	10	12	20	57	1.64
45408--45472	16	4.1	16	91	0	112	9	12	21	56	1.63
45542--45572	16	1.9	16	93	0	53	9	9	22	58	1.59
45892--46047	21	7.4	21	71	16	135	36	23	19	20	1.95
45888--46066	42	4.3	42	93	0	295	36	24	18	20	1.95
45885--46066	21	8.7	19	71	16	121	35	23	19	21	1.96
46389--46436	14	3.6	14	81	16	66	47	16	0	35	1.47
46388--46436	25	2.0	25	95	0	89	46	16	0	36	1.47
46388--46446	25	2.6	22	86	10	75	49	13	0	37	1.43
46433--46518	24	3.2	24	68	27	64	52	5	0	41	1.25
46515--46645	60	2.2	60	94	1	228	46	12	0	39	1.48
46722--46769	14	3.6	14	81	16	66	47	16	0	35	1.47
46721--46769	25	2.0	25	95	0	89	46	16	0	36	1.47
46721--46779	25	2.6	22	86	10	75	49	13	0	37	1.43
46721--46790	21	3.1	22	80	12	63	50	11	0	38	1.39
46790--46816	10	2.7	10	100	0	54	40	18	0	40	1.51
46800--46975	60	3.3	49	81	15	226	46	11	0	41	1.45
46883--46967	21	4.2	21	62	14	52	44	10	1	43	1.46
46899--46983	21	4.2	21	64	19	54	44	12	1	41	1.50
46849--46983	60	2.2	60	97	0	252	45	11	0	41	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46307--47317	335	3.0	334	92	3	1617	44	11	3	40	1.58
47057--47119	14	4.7	14	80	11	78	50	14	0	34	1.43
47056--47104	25	2.0	25	95	0	89	46	16	0	36	1.47
47096--47236	21	6.5	22	65	22	59	48	9	0	41	1.40
47097--47201	48	2.2	49	85	1	149	47	9	0	41	1.42
47072--47276	60	3.3	60	82	9	238	47	11	0	40	1.43
47196--47313	49	2.4	48	94	2	202	44	11	0	44	1.39
49647--49682	16	2.3	16	90	4	56	47	13	2	36	1.58
50151--50212	28	2.1	30	94	5	110	56	12	0	30	1.37
50613--50663	26	2.0	26	96	0	93	21	15	39	23	1.92
52045--52091	2	23.5	2	100	0	94	51	0	0	48	1.00
54962--55032	3	23.7	3	80	5	81	35	1	0	63	1.03
56546--56604	2	29.5	2	96	0	109	50	0	0	49	1.00
56617--57021	151	2.7	146	80	10	417	40	7	7	44	1.61
57526--57568	13	3.2	13	78	12	50	20	0	2	76	0.89
57508--57568	28	2.3	27	80	11	63	26	1	1	70	1.06
57527--57563	15	2.4	16	82	13	51	24	0	2	72	0.97
59190--59221	8	4.0	8	95	0	55	37	21	0	40	1.54
59255--59288	14	2.4	14	85	0	50	20	5	5	67	1.33
65093--65126	17	2.1	16	89	10	52	29	32	17	20	1.96
65091--65187	39	2.5	39	89	1	151	23	28	22	24	1.99
66033--66104	36	2.0	36	94	5	128	19	31	31	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70021--70060	21	1.9	21	89	0	62	10	25	40	25	1.86
81046--81140	39	2.5	38	84	1	118	24	28	22	25	1.99
81299--81325	12	2.2	12	100	0	54	40	25	0	33	1.56
81833--81927	39	2.5	38	82	1	109	25	27	22	25	2.00
82086--82112	12	2.2	12	100	0	54	40	25	0	33	1.56
80981--82551	787	2.0	787	99	0	3079	32	21	11	34	1.90
82788--82859	36	2.0	36	94	5	128	19	31	31	16	1.94
85343--85457	54	2.1	54	83	3	142	40	16	23	20	1.91
85806--85863	22	2.6	22	94	0	98	34	17	12	36	1.87
86618--86776	45	3.5	45	85	1	201	27	22	19	30	1.98
86663--86895	121	1.9	119	86	3	324	26	21	19	32	1.97
86520--87062	166	3.3	164	90	2	807	27	21	19	32	1.97
86784--86932	45	3.3	45	88	1	210	28	20	18	32	1.96
86834--87165	121	2.7	121	92	0	549	26	22	19	31	1.98
86956--87063	45	2.4	45	85	3	135	25	24	21	28	1.99
87071--87165	45	2.1	45	90	0	145	27	22	18	31	1.97
87314--87356	15	2.9	15	85	0	50	32	0	0	67	0.91
87327--87361	18	1.9	18	94	0	61	40	0	0	60	0.97
91864--91903	17	2.3	18	83	16	57	40	0	0	60	0.97
92276--92340	29	2.2	30	84	10	82	40	1	0	58	1.07

Tables:   1

The End!