genome.fa.s6234.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006234.1 Hibiscus syriacus cultivar Beakdansim tig00014859_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92799

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
667--721	18	3.1	18	89	2	85	50	3	9	36	1.51
1090--1124	11	3.3	11	88	4	54	0	11	0	88	0.51
1090--1125	15	2.3	16	90	4	56	0	13	0	86	0.58
8402--8433	15	2.1	15	100	0	64	50	6	18	25	1.70
11716--11753	12	3.1	13	81	11	53	76	2	0	21	0.91
12280--12332	28	1.9	28	92	3	90	39	0	0	60	0.97
12339--12629	152	1.9	150	90	4	469	51	8	4	35	1.54
14136--14220	6	14.3	6	89	7	120	78	0	0	21	0.74
20620--20833	107	2.0	107	99	0	419	31	12	9	46	1.74
22553--22594	18	2.3	18	87	0	57	9	30	33	26	1.88
23596--23654	31	1.9	31	96	0	109	42	6	8	42	1.61
23679--23805	22	5.8	22	72	16	95	54	12	0	33	1.38
23757--24272	18	31.1	18	61	24	106	53	12	0	33	1.41
23779--23832	14	3.6	14	72	18	54	57	5	0	37	1.22
23757--23896	32	4.6	32	75	23	140	53	11	0	34	1.42
23789--24464	54	12.2	54	72	16	480	52	12	0	34	1.41
23701--23976	80	3.3	80	84	11	365	53	13	0	33	1.43
23879--23952	22	3.2	22	70	16	60	55	17	0	27	1.42
23923--24403	32	16.7	32	75	21	469	53	13	0	33	1.40
23843--24403	144	3.9	147	90	6	740	52	13	0	33	1.42
24193--24233	21	1.9	22	85	5	57	51	14	0	34	1.43
23670--24270	230	2.6	219	73	20	304	53	12	0	33	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23955--24441	230	2.2	219	82	12	514	52	13	0	34	1.40
23955--24349	80	4.6	84	79	12	368	52	13	0	33	1.40
24251--24325	22	3.2	23	75	17	82	54	17	0	28	1.43
24329--24371	22	2.0	22	95	0	77	51	11	0	37	1.39
24331--24379	22	2.2	22	85	3	62	55	12	0	32	1.37
24383--24425	22	2.0	22	100	0	86	51	13	0	34	1.42
24427--24458	17	2.0	17	88	11	50	50	0	0	50	1.00
25018--25043	13	2.0	13	100	0	52	38	15	7	38	1.76
29315--29352	20	1.9	20	84	10	51	36	5	10	47	1.61
30591--30615	2	12.5	2	100	0	50	48	0	0	52	1.00
35688--35720	16	2.1	16	88	5	50	48	0	6	45	1.27
35807--35855	26	1.9	25	84	12	64	59	0	0	40	0.98
37273--37310	3	12.3	3	84	15	51	63	0	0	36	0.95
37441--38155	76	9.4	76	96	0	1270	35	21	20	22	1.96
38559--39084	113	4.7	111	89	3	741	29	19	12	38	1.89
39521--39575	22	2.5	22	90	0	92	38	14	12	34	1.84
39939--40108	54	3.1	54	93	0	286	22	20	16	40	1.91
42226--42480	83	3.1	83	96	0	465	36	20	14	28	1.92
49906--49938	16	2.1	16	88	5	50	48	0	6	45	1.27
50025--50073	26	1.9	25	84	12	64	59	0	0	40	0.98
50414--50446	2	16.5	2	100	0	66	48	0	0	51	1.00
51504--51544	3	14.0	3	80	14	50	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62997--63030	9	3.8	9	92	0	59	23	0	0	76	0.79
68647--68723	30	2.5	31	83	8	95	48	1	5	45	1.33
68637--68737	31	3.3	31	78	8	107	49	2	5	41	1.42
79249--79298	18	2.8	18	87	0	73	32	14	32	22	1.93
80941--81014	38	1.9	38	94	0	130	27	21	28	22	1.99
81034--81111	29	2.6	30	85	6	113	26	43	15	14	1.85
81034--81140	29	3.6	29	83	2	106	26	41	17	14	1.89
81156--81220	32	2.0	32	100	0	130	12	30	29	27	1.93
81206--81249	23	1.9	23	100	0	88	22	22	27	27	1.99
81661--81714	27	2.0	27	100	0	108	29	0	14	55	1.40
82009--82053	21	2.2	21	84	4	56	35	0	8	55	1.31

Tables:   1

The End!