Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006235.1 Hibiscus syriacus cultivar Beakdansim tig00014862_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 996025
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 5
Found at i:380388 original size:23 final size:23
Alignment explanation
Indices: 380362--380426 Score: 103
Period size: 23 Copynumber: 2.8 Consensus size: 23
380352 AAATATGATG
*
380362 TAATAGGTAGCGCTTATATAATA
1 TAATAGGTAGTGCTTATATAATA
* *
380385 TAATAGGTAGTGTTTATATAATG
1 TAATAGGTAGTGCTTATATAATA
380408 TAATAGGTAGTGCTTATAT
1 TAATAGGTAGTGCTTATAT
380427 TGTAAAGTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.35, C:0.05, G:0.20, T:0.40
Consensus pattern (23 bp):
TAATAGGTAGTGCTTATATAATA
Found at i:380430 original size:21 final size:22
Alignment explanation
Indices: 380354--380431 Score: 95
Period size: 23 Copynumber: 3.5 Consensus size: 22
380344 ATAGGTAAAA
*
380354 ATATGATGTAATAGGTAGCGCTT
1 ATAT-ATGTAATAGGTAGTGCTT
* *
380377 ATATAATATAATAGGTAGTGTTT
1 ATAT-ATGTAATAGGTAGTGCTT
380400 ATATAATGTAATAGGTAGTGCTT
1 ATAT-ATGTAATAGGTAGTGCTT
380423 ATAT-TGTAA
1 ATATATGTAA
380432 AGTATCTATC
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
21 5 0.10
23 44 0.90
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.40
Consensus pattern (22 bp):
ATATATGTAATAGGTAGTGCTT
Found at i:380775 original size:22 final size:22
Alignment explanation
Indices: 380731--380775 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
380721 ATTACATAAC
*
380731 TTTACAAAAAGTATCGATCCTT
1 TTTACAAAAAGTATCGAACCTT
*
380753 TTTATAAAAAGTAT-GAACACTT
1 TTTACAAAAAGTATCGAAC-CTT
380775 T
1 T
380776 CAATATAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (22 bp):
TTTACAAAAAGTATCGAACCTT
Found at i:380824 original size:23 final size:23
Alignment explanation
Indices: 380793--380865 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
380783 ATAGGTAAAA
* *
380793 ATATGATGTAATAGGTAGCACTT
1 ATATAATGTAATAGGTAGCGCTT
*
380816 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
380839 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
380862 ATAT
1 ATAT
380866 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:380918 original size:439 final size:437
Alignment explanation
Indices: 380093--380971 Score: 1578
Period size: 439 Copynumber: 2.0 Consensus size: 437
380083 ATATTATTAT
380093 TAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAAT
1 TAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAAT
*
380158 TTAAATTCTAAATATTATTTTATAAAATATCAAAACAATTAAATAATTTTTTGTGCAAATGAAAT
66 TTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAAT
*
380223 TATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACA
131 TATTAAATTAATATTGTAGGTGAAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACA
* *
380288 TAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACAATTTTAATATAATAGGTAAA
196 TAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGAACAATTTCAATATAATAGGTAAA
* *
380353 AATATGATGTAATAGGTAGCGCTTATATAATATAATAGGTAGTGTTTATATAATGTAATAGGTAG
261 AATATGATGTAATAGGTAGCACTTATATAATATAATAGGTAGCGTTTATATAATGTAATAGGTAG
* * * *
380418 TGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTTTATACTTTTTTCATTGTGGAAAAC
326 TGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTTCATACTTATTTCACTGTGGAAAAC
*
380483 ATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAG
391 ATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATCAATTTAG
380530 TAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAAT
1 TAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAAT
*
380595 TTAAATTCTAAATATTATTTTATAAAATATCAAAAACAATCAAATATTTTTTTGTGCAAATGAAA
66 TTAAATTCTAAATATTATTTTATAAAATATC-AAAACAATCAAATAATTTTTTGTGCAAATGAAA
* *
380660 TTATTAAATTAATATTGTATGTGAAAAACATGAAACACTATTAAAAAAAATTGAAACCTAAATTA
130 TTATTAAATTAATATTGTAGGTGAAAAACATGAAACACTATT-AAAAAAATTGAAACATAAATTA
* *
380725 CATAACTTTACAAAAAGTATCGATCCTTTTTATAAAAAGTATGAACACTTTCAATATAATAGGTA
194 CATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGAACAATTTCAATATAATAGGTA
*
380790 AAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGT
259 AAAATATGATGTAATAGGTAGCACTTATATAATATAATAGGTAGCGTTTATATAATGTAATAGGT
*
380855 AGTGCTTATATTGTAAAGTATTTATCATTTTTATAAAAGTGTTCATACTTATTTCACTGTGGAAA
324 AGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTTCATACTTATTTCACTGTGGAAA
380920 ACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATCAATTTAG
389 ACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATCAATTTAG
380969 TAA
1 TAA
380972 TTATATATAT
Statistics
Matches: 422, Mismatches: 18, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
437 96 0.23
438 71 0.17
439 255 0.60
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.40
Consensus pattern (437 bp):
TAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAAT
TTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAAT
TATTAAATTAATATTGTAGGTGAAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACA
TAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGAACAATTTCAATATAATAGGTAAA
AATATGATGTAATAGGTAGCACTTATATAATATAATAGGTAGCGTTTATATAATGTAATAGGTAG
TGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTTCATACTTATTTCACTGTGGAAAAC
ATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATCAATTTAG
Found at i:382709 original size:22 final size:22
Alignment explanation
Indices: 382679--382729 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
382669 AAATTTTATG
*
382679 AATT-TAAATTTATT-TAAGAA
1 AATTATAAATTAATTATAAGAA
*
382699 AATATATAAATTAATTATAATAA
1 AAT-TATAAATTAATTATAAGAA
382722 AATTATAA
1 AATTATAA
382730 TAGAATTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 3 0.12
21 1 0.04
22 14 0.54
23 8 0.31
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (22 bp):
AATTATAAATTAATTATAAGAA
Found at i:386004 original size:411 final size:409
Alignment explanation
Indices: 385246--386065 Score: 1590
Period size: 411 Copynumber: 2.0 Consensus size: 409
385236 ATTAAAGATA
385246 ATCAATTATATTTATAAAATTTTATTTATTTTTAAATGTTAATCTCAATCATATGTTTTTATTTA
1 ATCAATTATATTTATAAAATTTTATTTATTTTTAAATGTTAATCTCAATCATATGTTTTTATTTA
385311 TTCTTATTCAAATAATCGTATAAAATTAACTCTCTCTAATATATATATATTCCTTGTGAATAAAT
66 TTCTTATTCAAATAATCGTATAAAATTAACTCTCTCTAATATATATATATTCCTTGTGAATAAAT
385376 AATAAATTGTTCATGATTGGACTTTTCACAATTATTTAAAATTTATTGTTCATGAAAGCAGCATT
131 AATAAATTGTTCATGATTGGACTTTTCACAATTATTTAAAATTTATTGTTCATGAAAGCAGCATT
385441 ATCTACTTTTTTTTTGAAGACATAAATATTGTGTTTTCCATTCTTAATAATATACTTTAAAAAAT
196 ATCTACTTTTTTTTTGAAGACATAAATATTGTGTTTTCCATTCTTAATAATATACTTTAAAAAAT
385506 TGAAATTTCAGGATTTAAAAGGCTGTATAGATCCTATTAAATATCAAAGATTTATCCTATAATCC
261 TGAAATTTCAGGATTTAAAAGGCTGTATAGATCCTATTAAATATCAAAGATTTATCCTATAATCC
385571 TTCCCTTGATTATAAGCCGAAATCACTCTTGTTTTTTTCCCAAATAAATCAACTATATCTGTCTA
326 TTCCCTTGATTATAAGCCGAAATCACTCTTGTTTTTTTCCCAAATAAATCAACTATATCTGTCTA
385636 AAATATA-T-AATTAGTTT
391 AAATATATTAAATTAGTTT
385653 ATCAATTATATTTATAAAATTTTATTTATTTTTAAATGTTAATCTCAATCATATGTTTTTATTTA
1 ATCAATTATATTTATAAAATTTTATTTATTTTTAAATGTTAATCTCAATCATATGTTTTTATTTA
385718 TTCTTTAATTCAAATAATCGTATAAAATTAACTCTCTCTAATATATATATATATTCCTTGTGAAT
66 TTC-TT-ATTCAAATAATCGTATAAAATTAACTCTCTCT-A-ATATATATATATTCCTTGTGAAT
385783 AAATAATAAATTGTTCATGATTGGACTTTTCACAATTATTTAAAATTTATTGTTCATGAAAGCAG
127 AAATAATAAATTGTTCATGATTGGACTTTTCACAATTATTTAAAATTTATTGTTCATGAAAGCAG
385848 CATTATCTACTTTTTTTTTGAAGACATAAATATTGTGTTTTCCATTCTTAATAATATACTTTAAA
192 CATTATCTACTTTTTTTTTGAAGACATAAATATTGTGTTTTCCATTCTTAATAATATACTTTAAA
385913 AAATTGAAATTTCAGGATTTAAAAGGCTGTATAGATCCTATTAAATATCAAAGATTTATCCTATA
257 AAATTGAAATTTCAGGATTTAAAAGGCTGTATAGATCCTATTAAATATCAAAGATTTATCCTATA
385978 ATCCTTCCCTTGATTATAAGCCGAAATCACTCTTGTTTTTTTCCCAAATAAATCAACTATATCTG
322 ATCCTTCCCTTGATTATAAGCCGAAATCACTCTTGTTTTTTTCCCAAATAAATCAACTATATCTG
386043 TCTAAAATATATTAAATTAGTTT
387 TCTAAAATATATTAAATTAGTTT
386066 GAATTTTAGT
Statistics
Matches: 407, Mismatches: 0, Indels: 6
0.99 0.00 0.01
Matches are distributed among these distances:
407 68 0.17
408 2 0.00
409 32 0.08
410 1 0.00
411 294 0.72
412 1 0.00
413 9 0.02
ACGTcount: A:0.36, C:0.12, G:0.08, T:0.44
Consensus pattern (409 bp):
ATCAATTATATTTATAAAATTTTATTTATTTTTAAATGTTAATCTCAATCATATGTTTTTATTTA
TTCTTATTCAAATAATCGTATAAAATTAACTCTCTCTAATATATATATATTCCTTGTGAATAAAT
AATAAATTGTTCATGATTGGACTTTTCACAATTATTTAAAATTTATTGTTCATGAAAGCAGCATT
ATCTACTTTTTTTTTGAAGACATAAATATTGTGTTTTCCATTCTTAATAATATACTTTAAAAAAT
TGAAATTTCAGGATTTAAAAGGCTGTATAGATCCTATTAAATATCAAAGATTTATCCTATAATCC
TTCCCTTGATTATAAGCCGAAATCACTCTTGTTTTTTTCCCAAATAAATCAACTATATCTGTCTA
AAATATATTAAATTAGTTT
Found at i:386228 original size:12 final size:12
Alignment explanation
Indices: 386211--386235 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
386201 CATTTTTATT
386211 AATAAAAAGATG
1 AATAAAAAGATG
386223 AATAAAAAGATG
1 AATAAAAAGATG
386235 A
1 A
386236 TACACATCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (12 bp):
AATAAAAAGATG
Found at i:386622 original size:31 final size:31
Alignment explanation
Indices: 386597--386661 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
386587 GTAACTTTTA
386597 ATAGTCGAGA-AACTCAACAAAGTAACATTCT
1 ATAGTC-AGATAACTCAACAAAGTAACATTCT
* * *
386628 ATAGTCAGATGACTCAACAAAGCAACACTCT
1 ATAGTCAGATAACTCAACAAAGTAACATTCT
386659 ATA
1 ATA
386662 CTTGGAGGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
30 3 0.10
31 27 0.90
ACGTcount: A:0.45, C:0.22, G:0.12, T:0.22
Consensus pattern (31 bp):
ATAGTCAGATAACTCAACAAAGTAACATTCT
Found at i:389852 original size:20 final size:20
Alignment explanation
Indices: 389827--389871 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
389817 TTATCCGGAA
*
389827 AAAAATCCGGTCTGGGGTTT
1 AAAAATCCGGTCTGAGGTTT
389847 AAAAATCCGGTCTGAGGTTT
1 AAAAATCCGGTCTGAGGTTT
389867 AAAAA
1 AAAAA
389872 ATTGGATGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (20 bp):
AAAAATCCGGTCTGAGGTTT
Found at i:389926 original size:17 final size:16
Alignment explanation
Indices: 389900--389931 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
389890 TTACCGGATT
389900 AAAAAATGGTTTTTTA
1 AAAAAATGGTTTTTTA
389916 AAAAAACTGGTTTTTT
1 AAAAAA-TGGTTTTTT
389932 TCAAACCGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.41, C:0.03, G:0.12, T:0.44
Consensus pattern (16 bp):
AAAAAATGGTTTTTTA
Found at i:390074 original size:22 final size:21
Alignment explanation
Indices: 390035--390075 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
390025 AGTGAAAAAA
**
390035 CCGGATCGATTTTTATCCGAT
1 CCGGATCGATTTAAATCCGAT
390056 CCGGATCGGATTTAAATCCG
1 CCGGATC-GATTTAAATCCG
390076 GCTATGTGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (21 bp):
CCGGATCGATTTAAATCCGAT
Found at i:390947 original size:219 final size:219
Alignment explanation
Indices: 390207--391302 Score: 1754
Period size: 219 Copynumber: 5.0 Consensus size: 219
390197 AATAAGTTAA
* * * *
390207 TTATGTAAAATAATAACTTTAATAAAATTTGTTATC----AGGAAAAATCTACGTAGACTAAATG
1 TTATGTAAAATAAGAACTTTAATAATATTTATTATCATTTAGGAAAAATCTACGTAGACTATATG
* * *
390268 TTCGAAAAGAGCTGACATTTTAATGATTGCATATG-TTTTAAAATTTTATTTAATAAATAAGTGA
66 TTCGAAAAGAGCTGGCATTTTAATGACTGTATATGTTTTTAAAATTTTATTTAATAAATAAGTGA
*
390332 CGTGATAAAAGAAATATAAACATATTTAGGTAAAAAGCTATACGAGGCA-TTGCACCTTAAAAAA
131 TGTGATAAAAGAAATATAAACATATTTAGGTAAAAAGCTATACGAGGCATTTGCACCTTAAAAAA
390396 ATTAACGTGACTCTTGAATTATTT
196 ATTAACGTGACTCTTGAATTATTT
390420 TTATGTAAAATAAGAACTTTAATAATATTTATTATCATTTAGGAAAAATCTACGTAGACTATATG
1 TTATGTAAAATAAGAACTTTAATAATATTTATTATCATTTAGGAAAAATCTACGTAGACTATATG
* *
390485 TTTGAAAAGAGCTGGCATTTTAATAACTGTATATGTTTTTAAAATTTTATTTAATAAATAAGTGA
66 TTCGAAAAGAGCTGGCATTTTAATGACTGTATATGTTTTTAAAATTTTATTTAATAAATAAGTGA
* *
390550 TGTGATAAAAGAAATATAAACATATTTAGGTAAAAAGCTATACGAGGAGGTATTTGCACCATAAA
131 TGTGATAAAAGAAATATAAACATATTTAGGTAAAAAGCTATAC---GAGGCATTTGCACCTTAAA
390615 AAAATTAACGTGACTCTTGAATTATTT
193 AAAATTAACGTGACTCTTGAATTATTT
* * *
390642 TTATGCAAAATAAGAACTTTAATAATACTTATTATCATTTAGGAAAAATTTACGTAGACTATATG
1 TTATGTAAAATAAGAACTTTAATAATATTTATTATCATTTAGGAAAAATCTACGTAGACTATATG
390707 TTCGAAAAGAGCTGGCATTTTAATGACTGTATATGTTTTTAAAATTTTATTTAATAAATAAGTGA
66 TTCGAAAAGAGCTGGCATTTTAATGACTGTATATGTTTTTAAAATTTTATTTAATAAATAAGTGA
390772 TGTGATAAAAGAAATATAAACATATTTAGGTAAAAAGCTATACGAGGCATTTGCACCTTAAAAAA
131 TGTGATAAAAGAAATATAAACATATTTAGGTAAAAAGCTATACGAGGCATTTGCACCTTAAAAAA
390837 ATTAACGTGACTCTTGAATTATTT
196 ATTAACGTGACTCTTGAATTATTT
* *
390861 TCATGTAAAATAAGAACTTTAATAATATTTATTATCATTTAGGAAAAATCTACGTGGACTATATG
1 TTATGTAAAATAAGAACTTTAATAATATTTATTATCATTTAGGAAAAATCTACGTAGACTATATG
* ** * * *
390926 TTCGAAAAGATCTAACATTTTAATGATTGCATATGTTTTTAAAATTTTATTTAATAAATAATTGA
66 TTCGAAAAGAGCTGGCATTTTAATGACTGTATATGTTTTTAAAATTTTATTTAATAAATAAGTGA
*
390991 TGTGATAAAAGGAATATAAACATATTTAGGTAAAAAGCTATACGAGGCATTTGCACCTTAAAAAA
131 TGTGATAAAAGAAATATAAACATATTTAGGTAAAAAGCTATACGAGGCATTTGCACCTTAAAAAA
*
391056 ATTAACGTGGCTCTTGAATTATTT
196 ATTAACGTGACTCTTGAATTATTT
*
391080 TTATGCAAAATAAGAACTTTAATAATATTTATTATCATTTAGGAAAAATCTACGTAGACTATATG
1 TTATGTAAAATAAGAACTTTAATAATATTTATTATCATTTAGGAAAAATCTACGTAGACTATATG
* *
391145 TTTGAAAAGAGCTGGCATTTTAATAACTGTATATGTTTTTAAAATTTTATTTAATAAATAAGTGA
66 TTCGAAAAGAGCTGGCATTTTAATGACTGTATATGTTTTTAAAATTTTATTTAATAAATAAGTGA
* * * ** * * *
391210 TATGATAAAAGAAATAAAAAAATATTTAGACAAAAAGATATACAAGGCATTTGCACTTTTTAAAA
131 TGTGATAAAAGAAATATAAACATATTTAGGTAAAAAGCTATACGAGGCATTTGCAC--CTTAAAA
* * *
391275 AAACTAACTTGACTTTTGAATTATTT
194 AAATTAACGTGACTCTTGAATTATTT
391301 TT
1 TT
391303 GCACTCAATG
Statistics
Matches: 816, Mismatches: 56, Indels: 14
0.92 0.06 0.02
Matches are distributed among these distances:
213 33 0.04
217 54 0.07
218 71 0.09
219 417 0.51
221 35 0.04
222 206 0.25
ACGTcount: A:0.42, C:0.09, G:0.13, T:0.36
Consensus pattern (219 bp):
TTATGTAAAATAAGAACTTTAATAATATTTATTATCATTTAGGAAAAATCTACGTAGACTATATG
TTCGAAAAGAGCTGGCATTTTAATGACTGTATATGTTTTTAAAATTTTATTTAATAAATAAGTGA
TGTGATAAAAGAAATATAAACATATTTAGGTAAAAAGCTATACGAGGCATTTGCACCTTAAAAAA
ATTAACGTGACTCTTGAATTATTT
Found at i:391571 original size:24 final size:23
Alignment explanation
Indices: 391538--391599 Score: 79
Period size: 24 Copynumber: 2.6 Consensus size: 23
391528 AATTTTTTTA
* *
391538 TAAAAATAAAAATATTCTAAATT
1 TAAAAATAAAAATATTCAAAAAT
391561 TAAAAGATAAAAATATTCAAAAAT
1 TAAAA-ATAAAAATATTCAAAAAT
*
391585 TAAATATAATAAATA
1 TAAAAATAA-AAATA
391600 CTGTTGGGAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 9 0.26
24 25 0.74
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.31
Consensus pattern (23 bp):
TAAAAATAAAAATATTCAAAAAT
Found at i:392299 original size:65 final size:65
Alignment explanation
Indices: 392217--392350 Score: 198
Period size: 65 Copynumber: 2.1 Consensus size: 65
392207 ACCCATTTCA
* *
392217 AATGCATTTTGTGTACCGATGCACA-AGCCATGCATCGATGCACTCTTGAATATTTTGAAACATC
1 AATGCATTTTGTATACCGATGCACAGA-CCATGCATCGATGCACTCCTGAATATTTTGAAACATC
392281 G
65 G
* ** *
392282 AATGCATTTTGTATACCGATGCACAGACCATGCATCGATGTACTCCTGGCTCTTTTGAAACATCG
1 AATGCATTTTGTATACCGATGCACAGACCATGCATCGATGCACTCCTGAATATTTTGAAACATCG
392347 AATG
1 AATG
392351 TAATTAGAGT
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
65 61 0.98
66 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (65 bp):
AATGCATTTTGTATACCGATGCACAGACCATGCATCGATGCACTCCTGAATATTTTGAAACATCG
Found at i:392368 original size:65 final size:66
Alignment explanation
Indices: 392229--392370 Score: 173
Period size: 65 Copynumber: 2.2 Consensus size: 66
392219 TGCATTTTGT
* * *
392229 GTACCGATGCACAAGCCATGCATCGATGCACTCTTGAATATTTTGAAACATCGAATGCATTTTGT
1 GTACCGATGCACAAGCCATGCATCGATGCACTCCTGAATATTTTGAAACATCGAATGCAATTAGT
392294 A
66 A
* ** * *
392295 -TACCGATGCAC-AGACCATGCATCGATGTACTCCTGGCTCTTTTGAAACATCGAATGTAATTAG
1 GTACCGATGCACAAG-CCATGCATCGATGCACTCCTGAATATTTTGAAACATCGAATGCAATTAG
392358 -A
65 TA
*
392359 GTACTGATGCAC
1 GTACCGATGCAC
392371 TAAGTCTTAT
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
64 3 0.05
65 62 0.95
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.29
Consensus pattern (66 bp):
GTACCGATGCACAAGCCATGCATCGATGCACTCCTGAATATTTTGAAACATCGAATGCAATTAGT
A
Found at i:396115 original size:36 final size:36
Alignment explanation
Indices: 396063--396137 Score: 132
Period size: 36 Copynumber: 2.1 Consensus size: 36
396053 TTCTAAACGC
396063 CCTAAGACATCATCGAGTCATTCGAGTCAAAACCGA
1 CCTAAGACATCATCGAGTCATTCGAGTCAAAACCGA
* *
396099 CCTAGGACATCATCGAGTCGTTCGAGTCAAAACCGA
1 CCTAAGACATCATCGAGTCATTCGAGTCAAAACCGA
396135 CCT
1 CCT
396138 CCTATTCCTC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.20
Consensus pattern (36 bp):
CCTAAGACATCATCGAGTCATTCGAGTCAAAACCGA
Found at i:397686 original size:24 final size:24
Alignment explanation
Indices: 397654--397710 Score: 105
Period size: 24 Copynumber: 2.4 Consensus size: 24
397644 ATTTAACAAA
397654 AAGGGGGAGAATAAGTGCTATAGT
1 AAGGGGGAGAATAAGTGCTATAGT
*
397678 AAGGGGGAGAATAAGTGTTATAGT
1 AAGGGGGAGAATAAGTGCTATAGT
397702 AAGGGGGAG
1 AAGGGGGAG
397711 TAATTTTAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.37, C:0.02, G:0.42, T:0.19
Consensus pattern (24 bp):
AAGGGGGAGAATAAGTGCTATAGT
Found at i:402952 original size:20 final size:20
Alignment explanation
Indices: 402915--402963 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
402905 CTCTAAATCC
*
402915 TTTTTCAAAATTTCATTTTG
1 TTTTTCAAAATTCCATTTTG
402935 TTTTTCAAAA-TCCAATTTTG
1 TTTTTCAAAATTCC-ATTTTG
*
402955 -CTTTCAAAA
1 TTTTTCAAAA
402964 GAAAATCATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.31, C:0.14, G:0.04, T:0.51
Consensus pattern (20 bp):
TTTTTCAAAATTCCATTTTG
Found at i:404836 original size:19 final size:20
Alignment explanation
Indices: 404808--404851 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
404798 ATTGAATTAA
*
404808 ATAAACATTATAAA-TTAT-T
1 ATAAAAATTA-AAATTTATGT
404827 ATAAAAATTAAAATTTATGT
1 ATAAAAATTAAAATTTATGT
404847 ATAAA
1 ATAAA
404852 TTATCATGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 3 0.14
19 13 0.59
20 6 0.27
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (20 bp):
ATAAAAATTAAAATTTATGT
Found at i:405485 original size:21 final size:21
Alignment explanation
Indices: 405440--405485 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
405430 CACCATCTGT
* *
405440 CATCGTAGATCGTCACATTAA
1 CATCGTAGACCGTCACATCAA
*
405461 CATCGTAGACCGTCACATCAG
1 CATCGTAGACCGTCACATCAA
405482 CATC
1 CATC
405486 CTAACGGTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.24
Consensus pattern (21 bp):
CATCGTAGACCGTCACATCAA
Found at i:405803 original size:24 final size:24
Alignment explanation
Indices: 405766--405811 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
405756 GTTAAAATGA
*
405766 TAAACAAACACAAATGAACGAACG
1 TAAACAAACACAAACGAACGAACG
* *
405790 TAAACGAACTCAAACGAACGAA
1 TAAACAAACACAAACGAACGAA
405812 TATAAATGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.57, C:0.22, G:0.13, T:0.09
Consensus pattern (24 bp):
TAAACAAACACAAACGAACGAACG
Found at i:405817 original size:24 final size:24
Alignment explanation
Indices: 405765--405823 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 24
405755 CGTTAAAATG
* *
405765 ATAAACAAACACAAATGAACGAAC
1 ATAAACGAACACAAACGAACGAAC
* * *
405789 GTAAACGAACTCAAACGAACGAAT
1 ATAAACGAACACAAACGAACGAAC
*
405813 ATAAATGAACA
1 ATAAACGAACA
405824 TACATAAAAT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.58, C:0.19, G:0.12, T:0.12
Consensus pattern (24 bp):
ATAAACGAACACAAACGAACGAAC
Found at i:414449 original size:21 final size:21
Alignment explanation
Indices: 414423--414462 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
414413 CAGAACCCCA
*
414423 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
414444 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
414463 TCAAATGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:418357 original size:22 final size:21
Alignment explanation
Indices: 418315--418354 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
418305 GAGTTTGTTT
*
418315 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
418336 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
418355 ACAATTTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:425386 original size:18 final size:18
Alignment explanation
Indices: 425331--425387 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
425321 TAATAATATA
*
425331 TAATTATTGATAACTCAT
1 TAATTATTGATAAATCAT
* **
425349 TAAATT-TTAATAAAAGAT
1 T-AATTATTGATAAATCAT
*
425367 TAATTATTGATAAGTCAT
1 TAATTATTGATAAATCAT
425385 TAA
1 TAA
425388 ATTTTTTTAT
Statistics
Matches: 29, Mismatches: 8, Indels: 4
0.71 0.20 0.10
Matches are distributed among these distances:
17 4 0.14
18 21 0.72
19 4 0.14
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.42
Consensus pattern (18 bp):
TAATTATTGATAAATCAT
Found at i:427575 original size:19 final size:20
Alignment explanation
Indices: 427547--427648 Score: 129
Period size: 19 Copynumber: 5.1 Consensus size: 20
427537 ATCATATTGT
427547 CCAGGGGGTACAGATTCCCC
1 CCAGGGGGTACAGATTCCCC
427567 CCA-GGGGTACAGATTCCCC
1 CCAGGGGGTACAGATTCCCC
*
427586 CTGCAGGGGGTACCGATTCCCC
1 C--CAGGGGGTACAGATTCCCC
* *
427608 CCAAGGGGTACCGATT-CCC
1 CCAGGGGGTACAGATTCCCC
427627 CCAGGGGGTACCA-ATTCCCC
1 CCAGGGGGTA-CAGATTCCCC
427647 CC
1 CC
427649 TGTCTAACGG
Statistics
Matches: 73, Mismatches: 4, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
19 32 0.44
20 23 0.32
21 2 0.03
22 16 0.22
ACGTcount: A:0.19, C:0.38, G:0.27, T:0.16
Consensus pattern (20 bp):
CCAGGGGGTACAGATTCCCC
Found at i:428947 original size:19 final size:20
Alignment explanation
Indices: 428923--428970 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
428913 AACGATTTTC
*
428923 TTTTGAAAACAAAAAT-AGA
1 TTTTGAAAACAAAAATGAAA
* *
428942 TTTTGAAAGCCAAAATGAAA
1 TTTTGAAAACAAAAATGAAA
428962 TTTTGAAAA
1 TTTTGAAAA
428971 AGGATTTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.29
Consensus pattern (20 bp):
TTTTGAAAACAAAAATGAAA
Found at i:430432 original size:20 final size:20
Alignment explanation
Indices: 430407--430508 Score: 150
Period size: 20 Copynumber: 5.0 Consensus size: 20
430397 ATTAGATTGT
430407 CCAGGGGGTACAGATTCCCC
1 CCAGGGGGTACAGATTCCCC
430427 CCAGGGGGTACAGATTCCCC
1 CCAGGGGGTACAGATTCCCC
* *
430447 CTAGGGGGTACCGATTCCCCC
1 CCAGGGGGTACAGATT-CCCC
*
430468 CCAGGGGGAACAGATTCCCC
1 CCAGGGGGTACAGATTCCCC
* *
430488 CTAGGGGGTACCGATTCCCC
1 CCAGGGGGTACAGATTCCCC
430508 C
1 C
430509 TGTCTAACGA
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
20 56 0.77
21 17 0.23
ACGTcount: A:0.19, C:0.36, G:0.29, T:0.16
Consensus pattern (20 bp):
CCAGGGGGTACAGATTCCCC
Found at i:430481 original size:41 final size:41
Alignment explanation
Indices: 430409--430508 Score: 175
Period size: 41 Copynumber: 2.5 Consensus size: 41
430399 TAGATTGTCC
* *
430409 AGGGGGTACAGATT-CCCCCCAGGGGGTACAGATTCCCCCT
1 AGGGGGTACCGATTCCCCCCCAGGGGGAACAGATTCCCCCT
430449 AGGGGGTACCGATTCCCCCCCAGGGGGAACAGATTCCCCCT
1 AGGGGGTACCGATTCCCCCCCAGGGGGAACAGATTCCCCCT
430490 AGGGGGTACCGATTCCCCC
1 AGGGGGTACCGATTCCCCC
430509 TGTCTAACGA
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
40 13 0.23
41 44 0.77
ACGTcount: A:0.19, C:0.35, G:0.30, T:0.16
Consensus pattern (41 bp):
AGGGGGTACCGATTCCCCCCCAGGGGGAACAGATTCCCCCT
Found at i:433222 original size:2 final size:2
Alignment explanation
Indices: 433215--433289 Score: 150
Period size: 2 Copynumber: 37.5 Consensus size: 2
433205 TAGATTCTCC
433215 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
433257 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
433290 CTTCTTTTCC
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 73 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:438035 original size:54 final size:54
Alignment explanation
Indices: 437947--438551 Score: 612
Period size: 54 Copynumber: 11.2 Consensus size: 54
437937 GGGAAGGAAA
* ** *
437947 AGAAGATTGTTCGAG-TTCTACTCCCTGAAACAAGAGGGAGATAACCCGTAAGC
1 AGAAGATTGTTCGAGTTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGC
* * * *
438000 AGAAGATCGTTCGAGTTTTTACTCCCTGAAGCAAGAGGTAGCTAACCCGTAGGC
1 AGAAGATTGTTCGAGTTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGC
** * * *
438054 AGAAGATCATTCAAGTTTCTACTCCCTGAAGCAAGAGGGAGTGAACTCGTAGGC
1 AGAAGATTGTTCGAGTTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGC
* * *
438108 ATAAGATTATTCGAGTTCCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGC
1 AGAAGATTGTTCGAGTTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGC
* * * * *
438162 AGAAGATTGTTTGAG-TTCATATTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGC
1 AGAAGATTGTTCGAGTTTC-TACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGC
* * * * *
438216 AGAAGATTGTTTGAGTTCCTACTCCTTGAACCAAGAGGAAGCGAACCCGTAGGC
1 AGAAGATTGTTCGAGTTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGC
* * * * * * *
438270 AGAAGATTGTTCGAGTTCCTACTCCCTAAAGAAAGAAGGAGC-AATCCGTTGGT
1 AGAAGATTGTTCGAGTTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGC
* ** * *
438323 AGAATATCATTCGAG-TTCTACTCCCTGAATCAAGAGGGAGCAAACCCGTAGGC
1 AGAAGATTGTTCGAGTTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGC
* * *
438376 AGAAGATTGTTCGAGTTATAC-ACTCCTTGAAGCAAGAGGGAGCGAACCCGTTGAC
1 AGAAGATTGTTCGAGTT-T-CTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGC
* * * * * * * * ***
438431 ATAAGATTATTCGAGTTCTATACTCCCTAAAGAAAAAGGGAGCGGACCTGTTCAC
1 AGAAGATTGTTCGAGTT-TCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGC
* * *
438486 AGAAGA-TGTTCGAGTTTCATACTCCCTGAAGAAAGAGGGATCGAACCCGCTAGTC
1 AGAAGATTGTTCGAGTTTC-TACTCCCTGAAGCAAGAGGGAGCGAACCCG-TAGGC
438541 -GAAGATTGTTC
1 AGAAGATTGTTC
438552 AAAGAAGAGG
Statistics
Matches: 455, Mismatches: 86, Indels: 20
0.81 0.15 0.04
Matches are distributed among these distances:
52 21 0.05
53 57 0.13
54 289 0.64
55 87 0.19
56 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (54 bp):
AGAAGATTGTTCGAGTTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGC
Found at i:438739 original size:26 final size:24
Alignment explanation
Indices: 438703--438752 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
438693 CGGGATTAAA
438703 ATATATATATTATAAATATTAATT
1 ATATATATATTATAAATATTAATT
*
438727 ATATATTATTATTATAATTATTAATT
1 ATATA-TA-TATTATAAATATTAATT
438753 TTATTACATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.22
25 2 0.09
26 16 0.70
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
ATATATATATTATAAATATTAATT
Found at i:441668 original size:17 final size:17
Alignment explanation
Indices: 441642--441690 Score: 89
Period size: 17 Copynumber: 2.9 Consensus size: 17
441632 CAATTTGTTG
*
441642 TTTTAATTAAAATGAAT
1 TTTTATTTAAAATGAAT
441659 TTTTATTTAAAATGAAT
1 TTTTATTTAAAATGAAT
441676 TTTTATTTAAAATGA
1 TTTTATTTAAAATGA
441691 CAAAAACATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (17 bp):
TTTTATTTAAAATGAAT
Found at i:443929 original size:26 final size:26
Alignment explanation
Indices: 443900--443951 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
443890 CAAGTTCCGA
443900 ATCTCAGAATGTCCGGACTCGGCATT
1 ATCTCAGAATGTCCGGACTCGGCATT
443926 ATCTCAGAATGTCCGGACTCGGCATT
1 ATCTCAGAATGTCCGGACTCGGCATT
443952 CTTGATTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (26 bp):
ATCTCAGAATGTCCGGACTCGGCATT
Found at i:447706 original size:31 final size:31
Alignment explanation
Indices: 447668--447740 Score: 112
Period size: 31 Copynumber: 2.4 Consensus size: 31
447658 TCAACGTTGT
447668 TTTGTTGAGT-ATTCTGACTATAAGGCGATGC
1 TTTGTTGAGTCATTC-GACTATAAGGCGATGC
* *
447699 TTTGTTGAGTCATTCGACTATAAGGTGTTGC
1 TTTGTTGAGTCATTCGACTATAAGGCGATGC
447730 TTTGTTGAGTC
1 TTTGTTGAGTC
447741 CCCGACTATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
31 35 0.90
32 4 0.10
ACGTcount: A:0.19, C:0.12, G:0.26, T:0.42
Consensus pattern (31 bp):
TTTGTTGAGTCATTCGACTATAAGGCGATGC
Found at i:447749 original size:30 final size:31
Alignment explanation
Indices: 447683--447749 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
447673 TGAGTATTCT
**
447683 GACTATAAGGCGATGCTTTGTTGAGTCATTC
1 GACTATAAGGCGATGCTTTGTTGAGTCACCC
* *
447714 GACTATAAGGTGTTGCTTTGTTGAGTC-CCC
1 GACTATAAGGCGATGCTTTGTTGAGTCACCC
447744 GACTAT
1 GACTAT
447750 TAAAAGTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 7 0.22
31 25 0.78
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (31 bp):
GACTATAAGGCGATGCTTTGTTGAGTCACCC
Found at i:450436 original size:18 final size:18
Alignment explanation
Indices: 450413--450470 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 18
450403 GTGGTGGTGG
450413 TGGTGGTGGAGATGGAGA
1 TGGTGGTGGAGATGGAGA
*
450431 TGGTGGTGGAGATGTAGA
1 TGGTGGTGGAGATGGAGA
*
450449 ---TGATGGAGATGGAGA
1 TGGTGGTGGAGATGGAGA
*
450464 TGTTGGT
1 TGGTGGT
450471 AGTGATGTAG
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
15 13 0.39
18 20 0.61
ACGTcount: A:0.22, C:0.00, G:0.50, T:0.28
Consensus pattern (18 bp):
TGGTGGTGGAGATGGAGA
Found at i:450453 original size:21 final size:19
Alignment explanation
Indices: 450413--450466 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 19
450403 GTGGTGGTGG
450413 TGGTGGTGGAGATG-GAGA
1 TGGTGGTGGAGATGTGAGA
450431 TGGTGGTGGAGATGTAGATGA
1 TGGTGGTGGAGATGT-GA-GA
* *
450452 TGGAGATGGAGATGT
1 TGGTGGTGGAGATGT
450467 TGGTAGTGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
18 14 0.45
20 2 0.06
21 15 0.48
ACGTcount: A:0.24, C:0.00, G:0.50, T:0.26
Consensus pattern (19 bp):
TGGTGGTGGAGATGTGAGA
Found at i:450453 original size:27 final size:27
Alignment explanation
Indices: 450423--450519 Score: 113
Period size: 27 Copynumber: 3.4 Consensus size: 27
450413 TGGTGGTGGA
450423 GATGGAGATGGTGGTGGAGATGTAGAT
1 GATGGAGATGGTGGTGGAGATGTAGAT
*
450450 GATGGAGATGGAGATGTTGGTAGTGATGTAGAT
1 GATGGAGAT-G-G-TGGTGG-A--GATGTAGAT
* *
450483 GATGGAGATGGTGGTAGTGATGTAGAT
1 GATGGAGATGGTGGTGGAGATGTAGAT
450510 GATGGAGATG
1 GATGGAGATG
450520 AAAATGGTTG
Statistics
Matches: 60, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
27 28 0.47
28 1 0.02
29 1 0.02
30 9 0.15
31 2 0.03
32 1 0.02
33 18 0.30
ACGTcount: A:0.27, C:0.00, G:0.45, T:0.28
Consensus pattern (27 bp):
GATGGAGATGGTGGTGGAGATGTAGAT
Found at i:450458 original size:33 final size:33
Alignment explanation
Indices: 450419--450606 Score: 253
Period size: 33 Copynumber: 5.9 Consensus size: 33
450409 GTGGTGGTGG
* * *
450419 TGGAGATGGAGATGGTGGTGGAGATGTAGATGA
1 TGGAGATGAAGATGGTGGTAGTGATGTAGATGA
* *
450452 TGGAGATGGAGATGTTGGTAGTGATGTAGATGA
1 TGGAGATGAAGATGGTGGTAGTGATGTAGATGA
450485 T---G--G-AGATGGTGGTAGTGATGTAGATGA
1 TGGAGATGAAGATGGTGGTAGTGATGTAGATGA
* *
450512 TGGAGATGAAAATGGTTGTAGTGATGTAGATGA
1 TGGAGATGAAGATGGTGGTAGTGATGTAGATGA
*
450545 TGGAGATGAAGATGGTGGTAGTGATGTAGACGA
1 TGGAGATGAAGATGGTGGTAGTGATGTAGATGA
*
450578 TGGAGATGAAGATGGTTGTAGTGATGTAG
1 TGGAGATGAAGATGGTGGTAGTGATGTAG
450607 TAGTTATGAA
Statistics
Matches: 139, Mismatches: 10, Indels: 12
0.86 0.06 0.07
Matches are distributed among these distances:
27 24 0.17
28 1 0.01
30 2 0.01
32 1 0.01
33 111 0.80
ACGTcount: A:0.29, C:0.01, G:0.43, T:0.28
Consensus pattern (33 bp):
TGGAGATGAAGATGGTGGTAGTGATGTAGATGA
Found at i:450512 original size:60 final size:60
Alignment explanation
Indices: 450423--450606 Score: 253
Period size: 60 Copynumber: 3.0 Consensus size: 60
450413 TGGTGGTGGA
* * *
450423 GATGGAGATGGTGGTGGAGATGTAGATGATGGAGATGGAGAT-GTTGGTAGTGATGTAGAT
1 GATGGAGATGGTGGTAGTGATGTAGATGATGGAGATGAAGATGGTT-GTAGTGATGTAGAT
*
450483 GATGGAGATGGTGGTAGTGATGTAGATGATGGAGATGAAAATGGTTGTAGTGATGTAGAT
1 GATGGAGATGGTGGTAGTGATGTAGATGATGGAGATGAAGATGGTTGTAGTGATGTAGAT
*
450543 GATGGAGATGAAGATGGTGGTAGTGATGTAGACGATGGAGATGAAGATGGTTGTAGTGATGTAG
1 GAT---G--G-AGATGGTGGTAGTGATGTAGATGATGGAGATGAAGATGGTTGTAGTGATGTAG
450607 TAGTTATGAA
Statistics
Matches: 111, Mismatches: 6, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
60 55 0.50
61 3 0.03
63 1 0.01
65 1 0.01
66 51 0.46
ACGTcount: A:0.29, C:0.01, G:0.42, T:0.28
Consensus pattern (60 bp):
GATGGAGATGGTGGTAGTGATGTAGATGATGGAGATGAAGATGGTTGTAGTGATGTAGAT
Found at i:451595 original size:35 final size:36
Alignment explanation
Indices: 451555--451631 Score: 147
Period size: 35 Copynumber: 2.2 Consensus size: 36
451545 TGAGCATCAG
451555 TAAAAGCATCATATTACCTAAACCCATTAGAGTA-A
1 TAAAAGCATCATATTACCTAAACCCATTAGAGTACA
451590 TAAAAGCATCATATTACCTAAACCCATTAGAGTACA
1 TAAAAGCATCATATTACCTAAACCCATTAGAGTACA
451626 TAAAAG
1 TAAAAG
451632 AAGGGCTCCA
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
35 34 0.83
36 7 0.17
ACGTcount: A:0.47, C:0.19, G:0.09, T:0.25
Consensus pattern (36 bp):
TAAAAGCATCATATTACCTAAACCCATTAGAGTACA
Found at i:451629 original size:18 final size:18
Alignment explanation
Indices: 451573--451629 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
451563 TCATATTACC
451573 TAAACCCATTAGAGTA-A
1 TAAACCCATTAGAGTACA
** * * * *
451590 TAAAAGCATCATATTACC
1 TAAACCCATTAGAGTACA
451608 TAAACCCATTAGAGTACA
1 TAAACCCATTAGAGTACA
451626 TAAA
1 TAAA
451630 AGAAGGGCTC
Statistics
Matches: 27, Mismatches: 12, Indels: 1
0.68 0.30 0.03
Matches are distributed among these distances:
17 11 0.41
18 16 0.59
ACGTcount: A:0.47, C:0.19, G:0.09, T:0.25
Consensus pattern (18 bp):
TAAACCCATTAGAGTACA
Found at i:451933 original size:15 final size:15
Alignment explanation
Indices: 451911--452047 Score: 175
Period size: 15 Copynumber: 9.1 Consensus size: 15
451901 GCACTATCAA
451911 TACAAGCAGAATTAT
1 TACAAGCAGAATTAT
* *
451926 TACGAGCAGAATTAA
1 TACAAGCAGAATTAT
**
451941 TACGTGCAGAATTAT
1 TACAAGCAGAATTAT
* *
451956 TACAAGCATAATTAG
1 TACAAGCAGAATTAT
**
451971 TATGAGCAGAATTAT
1 TACAAGCAGAATTAT
*
451986 TACAAGCAGAATTAA
1 TACAAGCAGAATTAT
452001 TACAAGCAGAATTAT
1 TACAAGCAGAATTAT
*
452016 CACAAGCAGAATTAT
1 TACAAGCAGAATTAT
*
452031 CACAAGCAGAATTAT
1 TACAAGCAGAATTAT
452046 TA
1 TA
452048 ATATGCAGAC
Statistics
Matches: 104, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 104 1.00
ACGTcount: A:0.45, C:0.14, G:0.15, T:0.26
Consensus pattern (15 bp):
TACAAGCAGAATTAT
Found at i:460263 original size:29 final size:29
Alignment explanation
Indices: 460221--460278 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
460211 ATACTGATGT
460221 TACTGATGTTACACTCAAATAAGCCCTTA
1 TACTGATGTTACACTCAAATAAGCCCTTA
460250 TACTGATGTTACACTCAAATAAGCCCTTA
1 TACTGATGTTACACTCAAATAAGCCCTTA
460279 AGGCTTAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.31
Consensus pattern (29 bp):
TACTGATGTTACACTCAAATAAGCCCTTA
Found at i:469636 original size:30 final size:29
Alignment explanation
Indices: 469580--469636 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
469570 TTCTTTTTTC
* *
469580 AATCACAATAAATTAAAAGAGAGAAAAAA
1 AATCACAATAAATAAAAAGAAAGAAAAAA
*
469609 AATCACAAATAAA-AAAAAGAAAGGAAAA
1 AATCAC-AATAAATAAAAAGAAAGAAAAA
469637 GCAGGAGAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 18 0.75
30 6 0.25
ACGTcount: A:0.72, C:0.07, G:0.11, T:0.11
Consensus pattern (29 bp):
AATCACAATAAATAAAAAGAAAGAAAAAA
Found at i:470451 original size:11 final size:11
Alignment explanation
Indices: 470435--470481 Score: 60
Period size: 11 Copynumber: 4.2 Consensus size: 11
470425 TTATGCCTTA
470435 ATATTTATATT
1 ATATTTATATT
470446 ATATTTAATATT
1 ATATTT-ATATT
470458 ATTATTT-TATT
1 A-TATTTATATT
*
470469 ATATATATATT
1 ATATTTATATT
470480 AT
1 AT
470482 TCTAAAATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
10 4 0.12
11 17 0.53
12 6 0.19
13 5 0.16
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
ATATTTATATT
Found at i:470463 original size:18 final size:17
Alignment explanation
Indices: 470432--470482 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 17
470422 ATCTTATGCC
470432 TTAATATT-TATATTATA
1 TTAATATTAT-TATTATA
*
470449 TTTAATATTATTATTTTA
1 -TTAATATTATTATTATA
470467 TTATATATATATTATT
1 TTA-ATAT-TATTATT
470483 CTAAAATTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 3 0.10
18 18 0.62
19 8 0.28
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
TTAATATTATTATTATA
Found at i:470482 original size:25 final size:24
Alignment explanation
Indices: 470436--470482 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
470426 TATGCCTTAA
470436 TATTTATATTATATTTAATATTAT
1 TATTTATATTATATTTAATATTAT
*
470460 TATTT-TATTATATAT-ATATTAT
1 TATTTATATTATATTTAATATTAT
470482 T
1 T
470483 CTAAAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 8 0.36
23 9 0.41
24 5 0.23
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (24 bp):
TATTTATATTATATTTAATATTAT
Found at i:473553 original size:30 final size:29
Alignment explanation
Indices: 473482--473555 Score: 82
Period size: 28 Copynumber: 2.6 Consensus size: 29
473472 TAACAGTAGA
*
473482 AAACA-TCATGTATGAAATGAGAATTTTT
1 AAACATTCATGTATGAAATGAGAATTTGT
*
473510 AAACATT-ATGTATGAAACTTAGAATTGTGT
1 AAACATTCATGTATGAAA-TGAGAATT-TGT
*
473540 ATAC-TTCATGTATGAA
1 AAACATTCATGTATGAA
473556 TAGGGTAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
28 15 0.38
29 10 0.26
30 14 0.36
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.36
Consensus pattern (29 bp):
AAACATTCATGTATGAAATGAGAATTTGT
Found at i:476033 original size:17 final size:18
Alignment explanation
Indices: 476011--476045 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
476001 ATGTCGTGTT
476011 CGAATCA-AAATCTCAAG
1 CGAATCAGAAATCTCAAG
*
476028 CGAATCAGGAATCTCAAG
1 CGAATCAGAAATCTCAAG
476046 GGACAACAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.43, C:0.23, G:0.17, T:0.17
Consensus pattern (18 bp):
CGAATCAGAAATCTCAAG
Found at i:477300 original size:3 final size:3
Alignment explanation
Indices: 477287--477319 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
477277 TTTGTTTGAT
*
477287 TAC TGC TAC TAC TAC TAC TAC TAC TA- TAC TAC T
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC T
477320 GAGTGCATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.30, C:0.30, G:0.03, T:0.36
Consensus pattern (3 bp):
TAC
Found at i:477646 original size:4 final size:4
Alignment explanation
Indices: 477637--478178 Score: 1070
Period size: 4 Copynumber: 136.0 Consensus size: 4
477627 TAAATGATCC
477637 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
477685 CATA CATA CATA CATA CAT- -ATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
477731 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
477779 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
477827 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
477875 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
477923 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
477971 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
478019 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
478067 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
478115 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
478163 CATA CATA CATA CATA
1 CATA CATA CATA CATA
478179 TTGTTTATAA
Statistics
Matches: 536, Mismatches: 0, Indels: 4
0.99 0.00 0.01
Matches are distributed among these distances:
2 2 0.00
4 534 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:484336 original size:105 final size:105
Alignment explanation
Indices: 484064--485739 Score: 2898
Period size: 105 Copynumber: 16.0 Consensus size: 105
484054 GGGTCGCTCA
* *
484064 AGACAACGCAGGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCTCAATTTC
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTTC
* * *
484129 AGAGCCAATTTCAACTTCTCAACGAAGGATCTT-GACTCT
66 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
484168 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTT
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAAC-ATTTCCCAATTT
*
484233 CAGAGCCAATTTCAACTTCACCACGAAGGATATTGGACTCC
65 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* *
484274 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTTC
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTTC
484339 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
66 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
*
484379 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCTCAATTTC
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTTC
484444 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
66 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
484484 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTTC
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTTC
*
484549 AGAGCCAATTTCGACTTCACAACGAAGGATATTGGACTCC
66 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
484589 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTT
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAAC-ATTTCCCAATTT
*
484654 CAGAGCCAATTTCAACTTCACCACGAAGGATATTGGACTCC
65 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* *
484695 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTTC
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTTC
484760 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
66 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
*
484800 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCTCAATTTC
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTTC
484865 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
66 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
484905 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTTC
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTTC
*
484970 AGAGCCAATTTCGACTTCACAACGAAGGATATTGGACTCC
66 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
485010 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTTC
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTTC
*
485075 AGAGCCAATTTCGACTTCACAACGAAGGATATTGGACTCC
66 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* *
485115 AGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCTCAATTTC
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTTC
485180 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
66 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
485220 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTTC
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTTC
**
485285 AGAGCCAATTTTGACTTCACAACGAAGGATATTGGACTCC
66 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
485325 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTTC
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTTC
*
485390 AGAGCCAATTTCGACTTCACAACGAAGGATATTGGACTCC
66 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
*
485430 AGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTTC
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTTC
*
485495 AGAGCCAATTTCGACTTCACAACGAAGGATATTGGACTCC
66 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* *
485535 AGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTT
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAAC-ATTTCCCAATTT
* * * * *
485600 CAAAGCCAATTTCAACTTCTCAACGAATGATCTT-GAATCC
65 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* * * * * * *
485640 AAGACAACACAAGCTCAACTTCATGACGAAGGGGCGGCTGATTGTCAACAAA-ATTT--C-A-TT
1 -AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTT
* * * *
485700 CAGAGTCAATTCCAACTTCACAGCGGAGGATATTGGACTC
65 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTC
485740 GGAACAATGC
Statistics
Matches: 1510, Mismatches: 56, Indels: 15
0.96 0.04 0.01
Matches are distributed among these distances:
100 28 0.02
101 5 0.00
102 1 0.00
104 54 0.04
105 1181 0.78
106 241 0.16
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.23
Consensus pattern (105 bp):
AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTTC
AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
Found at i:486096 original size:33 final size:32
Alignment explanation
Indices: 486059--486160 Score: 118
Period size: 31 Copynumber: 3.2 Consensus size: 32
486049 CTGTCAACAG
*
486059 AACCTTTGAAATTGTTTCTCTTGAAACATAAAA
1 AACCTTTGAAATTATTTCTCTTGAAACA-AAAA
* * *
486092 AACCTTTGAACTCATTTCTCCTGAAAC-AAAA
1 AACCTTTGAAATTATTTCTCTTGAAACAAAAA
*
486123 AACCTTTGAGAA-TATTTCTCTTGAAACACAAA
1 AACCTTTGA-AATTATTTCTCTTGAAACAAAAA
*
486155 GACCTT
1 AACCTT
486161 CGAGTTCGAT
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
31 26 0.45
32 9 0.16
33 23 0.40
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (32 bp):
AACCTTTGAAATTATTTCTCTTGAAACAAAAA
Found at i:490948 original size:28 final size:28
Alignment explanation
Indices: 490883--490948 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 28
490873 TCCTTAATTT
**
490883 TTTTCGATTATACACATTCTTCATAACA
1 TTTTCGATTGCACACATTCTTCATAACA
*
490911 TTTTCGATTGCACACATTCTTCATAATA
1 TTTTCGATTGCACACATTCTTCATAACA
490939 TTTTCGATTG
1 TTTTCGATTG
490949 AACCGAACAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.27, C:0.20, G:0.08, T:0.45
Consensus pattern (28 bp):
TTTTCGATTGCACACATTCTTCATAACA
Found at i:490997 original size:22 final size:22
Alignment explanation
Indices: 490969--491011 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
490959 ATTAAAAAAA
*
490969 TAACATTTTAAGTTGTGTTCAT
1 TAACATTTTAAGTTGCGTTCAT
*
490991 TAACATTTTAGGTTGCGTTCA
1 TAACATTTTAAGTTGCGTTCA
491012 ACCGAAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.47
Consensus pattern (22 bp):
TAACATTTTAAGTTGCGTTCAT
Found at i:491836 original size:16 final size:17
Alignment explanation
Indices: 491815--491847 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
491805 TATATGAATT
*
491815 AAAGTTT-CATTATTAA
1 AAAGTTTACAGTATTAA
491831 AAAGTTTACAGTATTAA
1 AAAGTTTACAGTATTAA
491848 GTAAAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.39
Consensus pattern (17 bp):
AAAGTTTACAGTATTAA
Found at i:494037 original size:3 final size:3
Alignment explanation
Indices: 493964--494024 Score: 81
Period size: 3 Copynumber: 20.7 Consensus size: 3
493954 TTCATTTGAA
*
493964 TAT TAT T-T ATAT TAT TAT TAT TAT TAT AAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
494009 TTT TA- TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TA
494025 ATAAATATTA
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
2 3 0.06
3 47 0.92
4 1 0.02
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:495617 original size:17 final size:15
Alignment explanation
Indices: 495587--495622 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 15
495577 AAATTATAGT
495587 AATAAATTTAAATTA
1 AATAAATTTAAATTA
495602 AATAAGATTATAAATTA
1 AATAA-ATT-TAAATTA
495619 AATA
1 AATA
495623 TATCTTTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.26
16 3 0.16
17 11 0.58
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (15 bp):
AATAAATTTAAATTA
Found at i:502922 original size:113 final size:113
Alignment explanation
Indices: 502720--502944 Score: 351
Period size: 113 Copynumber: 2.0 Consensus size: 113
502710 AAGTGTCACG
* * *
502720 TTCTCGTAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
1 TTCTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTGTGAGTTATCTAATC
* * * *
502785 TGATTTGGTATGAACCCCAAAACCAATCATTGGATTTGAAAGATGAAT
66 TGATTCGGTATAAACCCCAAAACCAATAATTGGAATTGAAAGATGAAT
* *
502833 TTCTCATAGTAGAAATAATGAGACCCAATAGCATCTTTTGGAAGTGTTCTGTGAGTTATCTAATC
1 TTCTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTGTGAGTTATCTAATC
* *
502898 TGGTTCGGTATAAACCCCAGAACCAATAATTGGAATTGAAAGATGAA
66 TGATTCGGTATAAACCCCAAAACCAATAATTGGAATTGAAAGATGAA
502945 CTGCATGATC
Statistics
Matches: 101, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
113 101 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (113 bp):
TTCTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTGTGAGTTATCTAATC
TGATTCGGTATAAACCCCAAAACCAATAATTGGAATTGAAAGATGAAT
Found at i:505619 original size:22 final size:22
Alignment explanation
Indices: 505590--505644 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
505580 ATCTACACTC
505590 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
505612 TTTAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
505634 TTCAAAGATGA
1 TTCAAAGATGA
505645 AAACTTTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.40
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:506444 original size:76 final size:76
Alignment explanation
Indices: 506318--506499 Score: 276
Period size: 76 Copynumber: 2.4 Consensus size: 76
506308 CTATTTCCCA
506318 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGACTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGACTTCGGGAGCTTTTTGATGTTTTCAA
* *
506383 AGCCTTAGGGT
66 AACCTTAGAGT
* * *
506394 CATCTATAAGTCCTATAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGACTTCGGGAGCTTTTTGATGTTTTCAA
*
506459 AACCTTCGAGT
66 AACCTTAGAGT
* *
506470 CAGCTGTAAGCCCTACAGTGCA-GACTGTTT
1 CATCTGTAAGTCCTACAGTGCATGA-TGTTT
506500 TTTTTTCTTA
Statistics
Matches: 95, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
75 2 0.02
76 93 0.98
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (76 bp):
CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGACTTCGGGAGCTTTTTGATGTTTTCAA
AACCTTAGAGT
Found at i:506912 original size:113 final size:113
Alignment explanation
Indices: 506511--507501 Score: 1388
Period size: 113 Copynumber: 8.8 Consensus size: 113
506501 TTTTTCTTAA
* * *
506511 AACATTTCCAGATAGAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAGGAAGTTCATAAT
1 AACATTTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
**
506576 GAGAAGAACTTGTTCAAATTTTTGCTTGAATT-ATCATTCGATGGATC
66 GAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTCGATGGATC
506623 AACATTTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
1 AACATTTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
* *
506688 GAGAAGAACTTTTTCAACTTTTTGCTTGAATTCATCATTCGATGGATC
66 GAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTCGATGGATC
*
506736 AACATTT-CAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTGATAAT
1 AACATTTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
* * *
506800 GAGAAGAACTTGTTTAACTTTTTGCTTGAATTCATTATTCGATGGATC
66 GAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTCGATGGATC
*
506848 AGCATTTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
1 AACATTTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
* ** * *
506913 GAGAAGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTCGATGGATC
66 GAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTCGATGGATC
* * *
506961 AGCTTTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAA
1 AACATTTCCAG-GTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAA
* ** *
507025 TGAGAAGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTT-GATGGATC
65 TGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCA-TTCGATGGATC
* * * * *
507074 AGCTTTTCCAGAG-AAAGTTCATAATGAGAAGAACTCGTCTGAAGAATGAAGAAGAAGTTCATAA
1 AACATTTCCAG-GTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAA
* ** * *
507138 TGAGAAGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTCGATGGATC
65 TGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTCGATGGATC
* * * * *
507187 AGCTTTTCCAGAG-ATAGTTCATAATTAGAATAACTCATCTGAAGAAGGAAGAAGAAGTTCATAA
1 AACATTTCCAG-GTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAA
* * * *
507251 TGAGAAGAATTTGTACAACCTTTTGTTTGAATTCATCATTTGATGGATC
65 TGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTCGATGGATC
* * *
507300 AACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCTGAAGAAGGAAGAAGAAATTCATAAT
1 AACATTTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
* * * *
507365 GAGAAGAATTTGTTCAA-CTTTTAGTTTGAATTCATCACTCGATGTATC
66 GAGAAGAACTTGTTCAACCTTTT-GCTTGAATTCATCATTCGATGGATC
*
507413 AAC-TTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAA
1 AACATTTCCAG-GTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAA
* *
507476 TGAGAAGAGCTTGTTCGACCTTTTGC
65 TGAGAAGAACTTGTTCAACCTTTTGC
507502 ATGACTCTAT
Statistics
Matches: 811, Mismatches: 59, Indels: 18
0.91 0.07 0.02
Matches are distributed among these distances:
112 276 0.34
113 533 0.66
114 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (113 bp):
AACATTTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
GAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTCGATGGATC
Found at i:507582 original size:339 final size:330
Alignment explanation
Indices: 506564--507618 Score: 1079
Period size: 339 Copynumber: 3.1 Consensus size: 330
506554 GAAGGAAGAG
**
506564 GAAGTTCATAATGAGAAGAACTTGTTCAAATTTTTGCTTGAATT-ATCATTCGATGGATCAACAT
1 GAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTCGATGGATCAACAT
506628 TTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAA
66 TTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAA
* *
506693 GAACTTT-TTCAACTTTTTGCTTGAATTCATCATTCGATGGATCAACATTT-CAG-GTAGAGTTC
131 GAA-TTTGTTCAAC-TTTTGCTTGAATTCATCACTCGATGGATCAACATTTCCAGAG-AAAGTTC
* * * *
506755 ATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTGATAATGAGAAGAACTTGTTTAACTT
193 ATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCT
* * *
506820 TTTGCTTGA--AT-TC---ATTATTCGATGGATCAGCATTTCCAG-GTAGAGTTCATAATGAGAA
258 TTTGC-TGATCATCACGAGAGTATTC-AT--ATCAGCATTTTCAGAG--GAGTTCATAATGAGAA
506878 GAACTCATCTGAAGAAGGAAGAA
317 GAACTCATCT---------AGAA
* ** * * * *
506901 GAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTCGATGGATCAGCTT
1 GAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTCGATGGATCAACAT
*
506966 TTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
66 TTCCAG-GTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
** ** * * * *
507030 AGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCA
130 AGAATTTGTTCAA-CTTTTGCTTGAATTCATCACTCGATGGATCAACATTTCCAGAGAAAGTTCA
* *
507095 TAATGAGAAGAACTCGTCTGAAGAATGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTT
194 TAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTT
* * * * * *
507160 TTGCTCA-AATC-C---A-TCACTCGATGGATCAGC-TTTTCCAGAGATAGTTCATAATTAGAAT
259 TTGCTGATCATCACGAGAGT-ATTC-AT--ATCAGCATTTT-CAGAG-GAGTTCATAATGAGAAG
507218 AACTCATCTGAAGAAGGAAGAA
318 AACTCATCT---------AGAA
* * * *
507240 GAAGTTCATAATGAGAAGAATTTGTACAACCTTTTGTTTGAATTCATCATTTGATGGATCAACAT
1 GAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTCGATGGATCAACAT
* * *
507305 TGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCTGAAGAAGGAAGAAGAAATTCATAATGAGAA
66 TTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAA
* *
507370 GAATTTGTTCAACTTTTAGTTTGAATTCATCACTCGATGTATCAAC-TTTCCAGAGAAAGTTCAT
131 GAATTTGTTCAACTTTT-GCTTGAATTCATCACTCGATGGATCAACATTTCCAGAGAAAGTTCAT
*
507434 AATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCGACCTTT
195 AATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTT
507499 TGCATGACTCTATCACAGAAGGAGATATATCATCATCAGCATTTTCAGAAGGAGTTCATAATGAG
260 TGC-TGA-TC-ATCAC-G-A-GAG-TAT-TCAT-ATCAGCATTTTCAG-AGGAGTTCATAATGAG
*
507564 AAGAATTCATCTGAAGAA
315 AAGAACTCATCT--AGAA
* *
507582 GAAGAAATTCACAATGAGAAGAGCTTGTTCAACCTTT
1 GAAG---TTCATAATGAGAAGAACTTGTTCAACCTTT
507619 GCTAGATTAC
Statistics
Matches: 615, Mismatches: 71, Indels: 56
0.83 0.10 0.08
Matches are distributed among these distances:
337 40 0.07
338 210 0.34
339 279 0.45
340 2 0.00
342 13 0.02
343 1 0.00
345 26 0.04
349 32 0.05
350 9 0.01
351 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (330 bp):
GAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTCGATGGATCAACAT
TTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAA
GAATTTGTTCAACTTTTGCTTGAATTCATCACTCGATGGATCAACATTTCCAGAGAAAGTTCATA
ATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTT
GCTGATCATCACGAGAGTATTCATATCAGCATTTTCAGAGGAGTTCATAATGAGAAGAACTCATC
TAGAA
Found at i:507905 original size:3 final size:3
Alignment explanation
Indices: 507840--507892 Score: 51
Period size: 3 Copynumber: 18.7 Consensus size: 3
507830 TTCATTTGAA
* *
507840 TAT TAT T-T ATAT TAT TAT TAT TAT TAT T-T T-T TTT TTT TAT T-T
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
507882 TAT TAT TAT TA
1 TAT TAT TAT TA
507893 ATAAATATTA
Statistics
Matches: 45, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
2 7 0.16
3 37 0.82
4 1 0.02
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (3 bp):
TAT
Found at i:517598 original size:24 final size:25
Alignment explanation
Indices: 517571--517617 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
517561 CCATATCAAA
*
517571 TGATAATTATTA-TAATAATGTTTT
1 TGATAATTATTACTAAAAATGTTTT
*
517595 TGATAATTTTTACTAAAAATGTT
1 TGATAATTATTACTAAAAATGTT
517618 AAAAAAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.38, C:0.02, G:0.09, T:0.51
Consensus pattern (25 bp):
TGATAATTATTACTAAAAATGTTTT
Found at i:529652 original size:56 final size:56
Alignment explanation
Indices: 529566--529677 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
529556 ATGGTCGTTT
529566 TCTTACATTCTTCCTCCGGTCTTTCAAGAGTTGATGCTCCTTCATTGGGACACGCC
1 TCTTACATTCTTCCTCCGGTCTTTCAAGAGTTGATGCTCCTTCATTGGGACACGCC
529622 TCTTACATTCTTCCTCCGGTCTTTCAAGAGTTGATGCTCCTTCATTGGGACACGCC
1 TCTTACATTCTTCCTCCGGTCTTTCAAGAGTTGATGCTCCTTCATTGGGACACGCC
529678 ATCAGTCAGT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.16, C:0.30, G:0.18, T:0.36
Consensus pattern (56 bp):
TCTTACATTCTTCCTCCGGTCTTTCAAGAGTTGATGCTCCTTCATTGGGACACGCC
Found at i:530073 original size:137 final size:139
Alignment explanation
Indices: 529827--530103 Score: 531
Period size: 137 Copynumber: 2.0 Consensus size: 139
529817 CAGCTATACT
529827 TTTCTAATAGAGACCACCTGTAAAAGAATACATCCAATTTTGAATGAAACAAAAAGTTATAATGG
1 TTTCTAATAGAGACCACCTGTAAAAGAATACATCCAATTTTGAATGAAACAAAAAGTTATAATGG
529892 GTCAAGTCTCTGTTATTGTATCATGATACCATACAAAATTTAGA-TCTTTCATGC-TGAAAATGG
66 GTCAAGTCTCTGTTATTGTATCATGATACCATACAAAATTTAGACTCTTTCATGCTTGAAAATGG
529955 GAACATAAA
131 GAACATAAA
529964 TTTCTAATAGAGACCACCTGTAAAAGAATACATCCAATTTTGAATGAAACAAAAAGTTATAATGG
1 TTTCTAATAGAGACCACCTGTAAAAGAATACATCCAATTTTGAATGAAACAAAAAGTTATAATGG
530029 GTCAAGTCTCTGTTATTGTATCATGATACCATACAAAATTTAGATCTCTTTCATGCTTGAAAATG
66 GTCAAGTCTCTGTTATTGTATCATGATACCATACAAAATTTAGA-CTCTTTCATGCTTGAAAATG
530094 GGAACATAAA
130 GGAACATAAA
530104 GGAAATGTTT
Statistics
Matches: 137, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
137 109 0.80
139 10 0.07
140 18 0.13
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.31
Consensus pattern (139 bp):
TTTCTAATAGAGACCACCTGTAAAAGAATACATCCAATTTTGAATGAAACAAAAAGTTATAATGG
GTCAAGTCTCTGTTATTGTATCATGATACCATACAAAATTTAGACTCTTTCATGCTTGAAAATGG
GAACATAAA
Found at i:533971 original size:182 final size:183
Alignment explanation
Indices: 533664--534115 Score: 721
Period size: 182 Copynumber: 2.5 Consensus size: 183
533654 TTTTACTACC
533664 GGTTTTGTCATTTCTAGATCGATTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACA
1 GGTTTTGTCATTTCTAGATCGATTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACA
* * * *
533729 TTTTTATAAAGTATCGACATTTTATTGGCGCTATAACTTCTTTTATTTTAAATTCCAAAAGTGTC
66 TTTTTATAAAATATCGACACTTTATTAGCGCTATAACTTCTTCTATTTTAAATTCCAAAAGTGTC
* *
533794 GATACTTATAATAAAGTATCGACACTATCAACATATCCGGTAGCTCTTTA-CT
131 GATACTTATAATAAAGTATCGACACTATCAACATATCCGATAGCGCTTTATCT
* * * *
533846 GGTTTTGTCATTTCGAGACCGATTTTGTCATATTTTTACTTGTTATATTGTTATGGATCGATATA
1 GGTTTTGTCATTTCTAGATCGATTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACA
*
533911 TTTTTATAAAATATCGACACTTTATTAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTC
66 TTTTTATAAAATATCGACACTTTATTAGCGCTATAACTTCTTCTATTTTAAATTCCAAAAGTGTC
533976 GATACTTATAATAAAGTATCGACACTATCAACATATCCGATAGCGCTTTATCT
131 GATACTTATAATAAAGTATCGACACTATCAACATATCCGATAGCGCTTTATCT
* * * * * *
534029 -GTTTTGTAATTTATAGATC-AGTTTTGTCATTTTTTTACCTGTTTTATTGTTATAGATCGATAC
1 GGTTTTGTCATTTCTAGATCGA-TTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATAC
534092 ATTTTTATAAAATATCGACACTTT
65 ATTTTTATAAAATATCGACACTTT
534116 CAATATATCC
Statistics
Matches: 248, Mismatches: 20, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
181 1 0.00
182 245 0.99
183 2 0.01
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.44
Consensus pattern (183 bp):
GGTTTTGTCATTTCTAGATCGATTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACA
TTTTTATAAAATATCGACACTTTATTAGCGCTATAACTTCTTCTATTTTAAATTCCAAAAGTGTC
GATACTTATAATAAAGTATCGACACTATCAACATATCCGATAGCGCTTTATCT
Found at i:534124 original size:112 final size:110
Alignment explanation
Indices: 533986--534334 Score: 511
Period size: 112 Copynumber: 3.1 Consensus size: 110
533976 GATACTTATA
* * * * * *
533986 ATAAAGTATCGACACTATCAACATATCCGATAGCGCTTTATCTGTTTTGTAATTTATAGATCAGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTA-CTGTTTTGTCATTTATAGACCGGT
*
534051 TTTGTCATTTTTTTACCTGTTTTATTGTTATAGATCGATACATTTTT
65 TTTGTCATTTTTTTACCTGTTATATTGTTAT-GATCGATACATTTTT
*
534098 ATAAAATATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTA-CTGTTTTGTCATTTATAGACCGGT
*
534163 TTTGTCATTTTTTTTACCTGTTATATTGTTATGAATCGATACA-ATTT
65 TTTGTCA-TTTTTTTACCTGTTATATTGTTATG-ATCGATACATTTTT
534210 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACATGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTAC-TGTTTTGTCATTTATAGACCGGT
** * *
534275 TTTGTCATTTTTTTATTTGTTATATTGTTATGGATCAATATATTTTT
65 TTTGTCATTTTTTTACCTGTTATATTGTTAT-GATCGATACATTTTT
534322 ATAAAGTATCGAC
1 ATAAAGTATCGAC
534335 CAAAATCGAC
Statistics
Matches: 216, Mismatches: 16, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
111 30 0.14
112 154 0.71
113 32 0.15
ACGTcount: A:0.27, C:0.14, G:0.13, T:0.46
Consensus pattern (110 bp):
ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACTGTTTTGTCATTTATAGACCGGTT
TTGTCATTTTTTTACCTGTTATATTGTTATGATCGATACATTTTT
Found at i:540940 original size:13 final size:13
Alignment explanation
Indices: 540922--540950 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
540912 TATGCACATG
540922 TATTTTTTTAATT
1 TATTTTTTTAATT
540935 TATTTTTTTAATT
1 TATTTTTTTAATT
540948 TAT
1 TAT
540951 CCACATTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TATTTTTTTAATT
Found at i:548593 original size:35 final size:36
Alignment explanation
Indices: 548546--548642 Score: 117
Period size: 35 Copynumber: 2.7 Consensus size: 36
548536 AGATGAACAA
*
548546 TTGAATCGAAAGTGCTTATGCTTCCTCCCGTTC-AC
1 TTGAATCGAAAGTGCTGATGCTTCCTCCCGTTCTAC
* ** *
548581 TTGAATCAAAAGTAG-TGATGCTTCCTTTCGTTCTTC
1 TTGAATCGAAAGT-GCTGATGCTTCCTCCCGTTCTAC
*
548617 TTGAATCGAAAGTGCCGATGCTTCCT
1 TTGAATCGAAAGTGCTGATGCTTCCT
548643 TTTGTTCTTC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
35 28 0.54
36 24 0.46
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (36 bp):
TTGAATCGAAAGTGCTGATGCTTCCTCCCGTTCTAC
Found at i:548629 original size:36 final size:36
Alignment explanation
Indices: 548546--548654 Score: 132
Period size: 36 Copynumber: 3.1 Consensus size: 36
548536 AGATGAACAA
* ** *
548546 TTGAATCGAAAGTGCTTATGCTTCCTCCCGTTC-AC
1 TTGAATCGAAAGTGCTGATGCTTCCTTTCGTTCTTC
*
548581 TTGAATCAAAAGTAG-TGATGCTTCCTTTCGTTCTTC
1 TTGAATCGAAAGT-GCTGATGCTTCCTTTCGTTCTTC
* *
548617 TTGAATCGAAAGTGCCGATGCTTCCTTTTGTTCTTC
1 TTGAATCGAAAGTGCTGATGCTTCCTTTCGTTCTTC
548653 TT
1 TT
548655 ATCCACCTTC
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
35 28 0.44
36 35 0.56
ACGTcount: A:0.19, C:0.23, G:0.17, T:0.40
Consensus pattern (36 bp):
TTGAATCGAAAGTGCTGATGCTTCCTTTCGTTCTTC
Found at i:550883 original size:24 final size:23
Alignment explanation
Indices: 550826--550883 Score: 68
Period size: 24 Copynumber: 2.6 Consensus size: 23
550816 GAAAATATTA
550826 AAAATAATAATA-ACAAAAAATG
1 AAAATAATAATACACAAAAAATG
*
550848 AAAATTA-AATACATCCAAAAAA-G
1 AAAATAATAATACA--CAAAAAATG
550871 AAAATAATAATAC
1 AAAATAATAATAC
550884 TAATAATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
21 4 0.13
22 7 0.23
23 7 0.23
24 12 0.40
ACGTcount: A:0.69, C:0.09, G:0.03, T:0.19
Consensus pattern (23 bp):
AAAATAATAATACACAAAAAATG
Found at i:551125 original size:4 final size:4
Alignment explanation
Indices: 551112--551151 Score: 53
Period size: 4 Copynumber: 10.0 Consensus size: 4
551102 TATATATAGG
* * *
551112 TAAA TGAA TAAA TAAT TAGA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
551152 AGGGACCAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.28
Consensus pattern (4 bp):
TAAA
Found at i:552328 original size:24 final size:25
Alignment explanation
Indices: 552293--552342 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
552283 ATAATAATAA
552293 ATATATATATATAAATATTTTCAAAAC
1 ATATATATATAT-AA-ATTTTCAAAAC
552320 ATATA-ATATATAAATTTTCAAAA
1 ATATATATATATAAATTTTCAAAA
552343 TGTTTTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.43
25 2 0.09
26 6 0.26
27 5 0.22
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (25 bp):
ATATATATATATAAATTTTCAAAAC
Found at i:552404 original size:74 final size:74
Alignment explanation
Indices: 552305--552593 Score: 282
Period size: 74 Copynumber: 3.9 Consensus size: 74
552295 ATATATATAT
* * ** *
552305 AAATATTTTCAAAACATATAATATATAAATTTTC-AAAATGTTTTTTTAAACTATATAATATAGG
1 AAATGTTTTCAAAAAATATAATATATAAATTTTCAAAAATGTTTTTAAAAACTATATAATATA-A
552369 AATGTTTTCA
65 AATGTTTTCA
* * * * *
552379 ACATGTTTTCAAAAAAAATATTATATAAGTTTTCAAAAACG-TTTTAAAAACTATATAATATATA
1 AAATGTTTTCAAAAAATATAATATATAAATTTTCAAAAATGTTTTTAAAAACTATATAATATA-A
552443 AATGTTTTCA
65 AATGTTTTCA
* ** *
552453 AAATGTTTTC-AAAACTATAATATATATGTTTTCAAAAATGTTTTCAAAAACTATATATATATAT
1 AAATGTTTTCAAAAAATATAATATATAAATTTTCAAAAATGTTTTTAAAAACTATATA-ATATA-
552517 ATAA-GTTTTCA
64 A-AATGTTTTCA
* * * ** *
552528 AAATGATTTT-AAAAATTATATATTATATATATTTTCTAAAATGTTTTTTTTAAACTATATATTA
1 AAATG-TTTTCAAAAA--ATATAATATATAAATTTTCAAAAATG-TTTTTAAAAACTATATAATA
552592 TA
62 TA
552594 TAGTTTTAAA
Statistics
Matches: 180, Mismatches: 26, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
73 25 0.14
74 81 0.45
75 24 0.13
76 10 0.06
78 26 0.14
79 14 0.08
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.44
Consensus pattern (74 bp):
AAATGTTTTCAAAAAATATAATATATAAATTTTCAAAAATGTTTTTAAAAACTATATAATATAAA
ATGTTTTCA
Found at i:552458 original size:11 final size:11
Alignment explanation
Indices: 552442--552466 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
552432 TATAATATAT
552442 AAATGTTTTCA
1 AAATGTTTTCA
552453 AAATGTTTTCA
1 AAATGTTTTCA
552464 AAA
1 AAA
552467 CTATAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (11 bp):
AAATGTTTTCA
Found at i:552495 original size:12 final size:12
Alignment explanation
Indices: 552478--552502 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
552468 TATAATATAT
552478 ATGTTTTCAAAA
1 ATGTTTTCAAAA
552490 ATGTTTTCAAAA
1 ATGTTTTCAAAA
552502 A
1 A
552503 CTATATATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (12 bp):
ATGTTTTCAAAA
Found at i:552555 original size:39 final size:38
Alignment explanation
Indices: 552305--552629 Score: 240
Period size: 39 Copynumber: 8.7 Consensus size: 38
552295 ATATATATAT
* * *
552305 AAATATTTTCAAAAC-ATATA--ATATATAAATTTTCA
1 AAATGTTTTAAAAACTATATATTATATATAAGTTTTCA
** *
552340 AAATGTTTTTTTAAACTATATA--ATATAGGAATGTTTTCA
1 AAATG-TTTTAAAAACTATATATTATATA-TAA-GTTTTCA
* *
552379 ACATGTTTTCAAAAA--AAATA-T-TATATAAGTTTTCAA
1 AAATGTTTT-AAAAACTATATATTATATATAAGTTTTC-A
* *
552415 AAACGTTTTAAAAACTATATAATATATA-AATGTTTTCA
1 AAATGTTTTAAAAACTATATATTATATATAA-GTTTTCA
*
552453 AAATGTTTTCAAAACTATA-A-TATATAT--GTTTTCAA
1 AAATGTTTTAAAAACTATATATTATATATAAGTTTTC-A
552488 AAATGTTTTCAAAAACTATATATATATATATAAGTTTTCA
1 AAATGTTTT-AAAAACTATATAT-TATATATAAGTTTTCA
*
552528 AAATGATTTTAAAAATTATATATTATATAT-A-TTTTCTA
1 AAATG-TTTTAAAAACTATATATTATATATAAGTTTTC-A
**
552566 AAATGTTTTTTTTAAACTATATA-T-TATAT-AGTTTT-A
1 AAATG--TTTTAAAAACTATATATTATATATAAGTTTTCA
** *
552602 AAAACTATTAAAAACTATATATTATATA
1 AAATGTTTTAAAAACTATATATTATATA
552630 CGTAGTTTTA
Statistics
Matches: 238, Mismatches: 26, Indels: 51
0.76 0.08 0.16
Matches are distributed among these distances:
34 19 0.08
35 26 0.11
36 41 0.17
37 35 0.15
38 39 0.16
39 50 0.21
40 18 0.08
41 10 0.04
ACGTcount: A:0.45, C:0.06, G:0.05, T:0.44
Consensus pattern (38 bp):
AAATGTTTTAAAAACTATATATTATATATAAGTTTTCA
Found at i:553551 original size:165 final size:165
Alignment explanation
Indices: 553272--554535 Score: 1798
Period size: 165 Copynumber: 7.6 Consensus size: 165
553262 TTTGCCTCTG
* * * * *
553272 AGCTGAGTGTAATCGAACTCGAAGGTCTTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGC
1 AGCTGAGTGTAATCGAACTCGAAGGTC-TTT-G-G-CAGATAGCCCTTCTCGACTTAAGCTATGC
* * *
553337 TGCAAATGATGTGCCCTCGAAGCTGAGCGTAATCGAACTCAAAGGTCTTTGGTTGGCAGACAACC
62 TGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGACAACC
* *
553402 CTTCTAGACTTAAGTTGTGATGCAAATGATATGTCCTCGA
126 CTTCTAGACTTAAGTTGTGCTGCAAATGATATGCCCTCGA
* * * *
553442 AGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAGCCCTTATCGATTTAAGCTATGCTGCG
1 AGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCA
* * *
553507 AATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCCTCT
66 AATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGACAACCCTTCT
* * *
553572 TGACTTAAGTTATGCTGCAAATGATGTGCCCTC-A
131 AGACTTAAGTTGTGCTGCAAATGATATGCCCTCGA
*
553606 GAGCTGAGTGTAATCGAACTCGAAGATCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGC
1 -AGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGC
553671 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGACAACCCTTC
65 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGACAACCCTTC
* * *
553736 TAAACTTAAATTGTGCTGCAAATGATATGCCCTCGG
130 TAGACTTAAGTTGTGCTGCAAATGATATGCCCTCGA
* * ** *
553772 AGTTGAGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGCTCTTCTATACTTAAGCTATGCTACA
1 AGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCA
* *
553837 AATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCATATAACCCTTCT
66 AATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGACAACCCTTCT
* * *
553902 TGACTTAAGTTATGCTGCAAATGATGTGCCCTC-A
131 AGACTTAAGTTGTGCTGCAAATGATATGCCCTCGA
*
553936 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGATATGCTGC
1 -AGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGC
554001 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGACAACCCTTC
65 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGACAACCCTTC
*
554066 TAGACTTAAGTTGTGCTGCAAATGATATGCCCTCGG
130 TAGACTTAAGTTGTGCTGCAAATGATATGCCCTCGA
**
554102 AGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTATACTTAAGCTATGCTGCA
1 AGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCA
* * * ** *
554167 AATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGATCACAGATAACCCTTCT
66 AATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGACAACCCTTCT
* * * * * *
554232 AGCCTTGAGTTATGTTGTAAATGATGTGCCCTCGA
131 AGACTTAAGTTGTGCTGCAAATGATATGCCCTCGA
**
554267 AGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCA
1 AGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCA
* * *
554332 AATGATGTGCCGTT-GAGCCGAGTGTAGTCGAACTCAAAGGTCTTTTGTTGGCAGACAACCCTTC
66 AATGATGTGCC-TTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGACAACCCTTC
* *
554396 TAGACTTAAGTTGTGCTGCAAATGATATG-CCTTGG
130 TAGACTTAAGTTGTGCTGCAAATGATATGCCCTCGA
* * * *
554431 AGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGC
1 AGCTGAGTGTAATCGAACTCGAAGGTC--T--TTGGCAGATAGCCCTTCTCGACTTAAGCTATGC
* * * *
554496 TGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTC
62 TGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTC
554536 GGGGGTCTTT
Statistics
Matches: 978, Mismatches: 105, Indels: 23
0.88 0.09 0.02
Matches are distributed among these distances:
164 28 0.03
165 818 0.84
166 36 0.04
167 1 0.00
168 46 0.05
169 23 0.02
170 26 0.03
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (165 bp):
AGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCA
AATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGACAACCCTTCT
AGACTTAAGTTGTGCTGCAAATGATATGCCCTCGA
Found at i:559398 original size:24 final size:20
Alignment explanation
Indices: 559366--559426 Score: 68
Period size: 24 Copynumber: 2.8 Consensus size: 20
559356 GAAAATATTA
559366 AAAATAATAATAACAAAAAATG
1 AAAATAATAAT-ACAAAAAA-G
*
559388 AAAATTAAATACATCCAAAAAAG
1 AAAA-T-AATA-ATACAAAAAAG
559411 AAAATAATAATACAAA
1 AAAATAATAATACAAA
559427 TAATAATAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
20 6 0.18
21 4 0.12
22 5 0.15
23 6 0.18
24 11 0.32
25 2 0.06
ACGTcount: A:0.70, C:0.08, G:0.03, T:0.18
Consensus pattern (20 bp):
AAAATAATAATACAAAAAAG
Found at i:559672 original size:4 final size:4
Alignment explanation
Indices: 559659--559698 Score: 62
Period size: 4 Copynumber: 10.0 Consensus size: 4
559649 TATATATAGG
* *
559659 TAAA TGAA TAAA TAAT TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
559699 AGGGACCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.28
Consensus pattern (4 bp):
TAAA
Found at i:560800 original size:23 final size:23
Alignment explanation
Indices: 560774--560818 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
560764 AATAATATAT
*
560774 ATATACATAAAT-ATTTTCAAAAC
1 ATATA-ATAAATAAATTTCAAAAC
*
560797 ATATAATATATAAATTTCAAAA
1 ATATAATAAATAAATTTCAAAA
560819 TGTTTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.36
Consensus pattern (23 bp):
ATATAATAAATAAATTTCAAAAC
Found at i:560943 original size:35 final size:35
Alignment explanation
Indices: 560782--561056 Score: 189
Period size: 37 Copynumber: 7.7 Consensus size: 35
560772 ATATATACAT
*
560782 AAATATTTTCAAAACATATAATATATAAA--TTTCA
1 AAATGTTTTCAAAAC-TATAATATATAAATGTTTCA
*
560816 AAATGTTTT-TAAACTAT-ATAATATACGAATGTTTTCA
1 AAATGTTTTCAAAACTATAAT-ATATA--AATG-TTTCA
* * *
560853 ACATGTTTTCAAAA--AAAATAT-TATATAGTTTTCA
1 AAATGTTTTCAAAACTATAATATATAAAT-G-TTTCA
* *
560887 AAACGTTTTAAAAACTATATAATATATAAATGTTTCA
1 AAATGTTTTCAAAAC--TATAATATATAAATGTTTCA
560924 AAATGTTTTCAAAACTATAATATAT--ATGTTTTCAA
1 AAATGTTTTCAAAACTATAATATATAAATG-TTTC-A
*
560959 AAATGTTTTCAAAAACTAT-ATATATAAGT-TTTCA
1 AAATGTTTTC-AAAACTATAATATATAAATGTTTCA
* * *
560993 AAATGATTTTAAAAATTAT-ATATTATATAT-TTTCTA
1 AAATG-TTTTCAAAACTATAATA-TATAAATGTTTC-A
* *
561029 AAATGTTTTTTTAAAACTATATTATATA
1 AAATG--TTTTCAAAACTATAATATATA
561057 GTTTTAAAAA
Statistics
Matches: 195, Mismatches: 22, Indels: 45
0.74 0.08 0.17
Matches are distributed among these distances:
31 2 0.01
32 8 0.04
33 9 0.05
34 48 0.25
35 46 0.24
36 17 0.09
37 49 0.25
38 12 0.06
39 4 0.02
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43
Consensus pattern (35 bp):
AAATGTTTTCAAAACTATAATATATAAATGTTTCA
Found at i:560950 original size:72 final size:73
Alignment explanation
Indices: 560782--561056 Score: 261
Period size: 71 Copynumber: 3.8 Consensus size: 73
560772 ATATATACAT
* * * **
560782 AAATATTTTCAAAACATATAATA-TATA-AATTTC-AAAATGTTTT-TAAACTATATAATATACG
1 AAATGTTTTCAAAAC-TATAATATTATATATTTTCAAAAATGTTTTAAAAACTATATAATATATA
560843 AATGTTTTCA
65 AATG-TTTCA
* * *
560853 ACATGTTTTCAAAA--AAAATATTATATAGTTTTC-AAAACGTTTTAAAAACTATATAATATATA
1 AAATGTTTTCAAAACTATAATATTATATA-TTTTCAAAAATGTTTTAAAAACTATATAATATATA
560915 AATGTTTCA
65 AATGTTTCA
*
560924 AAATGTTTTCAAAACTATAATA-TATATGTTTTCAAAAATGTTTTCAAAAAC--TAT-ATATATA
1 AAATGTTTTCAAAACTATAATATTATATATTTTCAAAAATGTTTT-AAAAACTATATAATATATA
*
560985 AGT-TTTCA
65 AATGTTTCA
* * * * *
560993 AAATGATTTTAAAAATTAT-ATATTATATATTTTCTAAAATGTTTTTTTAAAACTATATTATATA
1 AAATG-TTTTCAAAACTATAATATTATATATTTTCAAAAATG--TTTTAAAAACTATATAATATA
561057 GTTTTAAAAA
Statistics
Matches: 171, Mismatches: 18, Indels: 27
0.79 0.08 0.12
Matches are distributed among these distances:
68 5 0.03
69 17 0.10
70 37 0.22
71 56 0.33
72 37 0.22
73 14 0.08
74 5 0.03
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43
Consensus pattern (73 bp):
AAATGTTTTCAAAACTATAATATTATATATTTTCAAAAATGTTTTAAAAACTATATAATATATAA
ATGTTTCA
Found at i:560966 original size:12 final size:12
Alignment explanation
Indices: 560949--560973 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
560939 TATAATATAT
560949 ATGTTTTCAAAA
1 ATGTTTTCAAAA
560961 ATGTTTTCAAAA
1 ATGTTTTCAAAA
560973 A
1 A
560974 CTATATATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (12 bp):
ATGTTTTCAAAA
Found at i:570130 original size:2 final size:2
Alignment explanation
Indices: 570123--570160 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
570113 ATTTGTAAGA
570123 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
570161 CTGAAAGGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:571425 original size:33 final size:33
Alignment explanation
Indices: 571382--571445 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
571372 TAAATAAAAT
571382 AATCAATCACATAATACATAACCTCAAGTAAAG
1 AATCAATCACATAATACATAACCTCAAGTAAAG
* *
571415 AATCAGTCACATAATACATAACCTTAAGTAA
1 AATCAATCACATAATACATAACCTCAAGTAA
571446 GGATGGAAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.50, C:0.20, G:0.06, T:0.23
Consensus pattern (33 bp):
AATCAATCACATAATACATAACCTCAAGTAAAG
Found at i:573068 original size:10 final size:10
Alignment explanation
Indices: 573035--573069 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
573025 AAATTTTGAG
573035 TTTTTATACT
1 TTTTTATACT
*
573045 TTTATATA-T
1 TTTTTATACT
573054 TTTTTATACT
1 TTTTTATACT
573064 TTTTTA
1 TTTTTA
573070 GAATCAAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (10 bp):
TTTTTATACT
Found at i:574064 original size:19 final size:19
Alignment explanation
Indices: 574040--574085 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
574030 AGAGCCAGGA
574040 GTGCATCGATGCATGGTAT
1 GTGCATCGATGCATGGTAT
574059 GTGCATCGATGCATGGTAT
1 GTGCATCGATGCATGGTAT
574078 GTGCATCG
1 GTGCATCG
574086 GTACACAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.20, C:0.17, G:0.33, T:0.30
Consensus pattern (19 bp):
GTGCATCGATGCATGGTAT
Found at i:576663 original size:44 final size:44
Alignment explanation
Indices: 576598--576701 Score: 174
Period size: 44 Copynumber: 2.4 Consensus size: 44
576588 GATGCATTGT
576598 ATAGTGTATCGATGCACATTCAAGGAATGCATCGGTACACCTTC
1 ATAGTGTATCGATGCACATTCAAGGAATGCATCGGTACACCTTC
* * *
576642 ATAGTGTATCGATGCATATTCAAGGGATGCATCGGTACACTTTC
1 ATAGTGTATCGATGCACATTCAAGGAATGCATCGGTACACCTTC
576686 -TAGTGTATCGATGCAC
1 ATAGTGTATCGATGCAC
576702 TTTGCACAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
43 15 0.27
44 41 0.73
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (44 bp):
ATAGTGTATCGATGCACATTCAAGGAATGCATCGGTACACCTTC
Found at i:582522 original size:19 final size:19
Alignment explanation
Indices: 582498--582543 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
582488 AGAGCCAGGA
582498 GTGCATCGATGCATGGTAT
1 GTGCATCGATGCATGGTAT
582517 GTGCATCGATGCATGGTAT
1 GTGCATCGATGCATGGTAT
582536 GTGCATCG
1 GTGCATCG
582544 GTACACAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.20, C:0.17, G:0.33, T:0.30
Consensus pattern (19 bp):
GTGCATCGATGCATGGTAT
Found at i:586335 original size:61 final size:60
Alignment explanation
Indices: 586249--586424 Score: 162
Period size: 61 Copynumber: 2.9 Consensus size: 60
586239 GTATATACGT
* ** * ***
586249 ATAGTTTGGGATAAAATTGGAATGTTAAAAATGTTTGGGGACTAATTTAGAATGA-AGGTC
1 ATAGTTTGGGATGAAATTAAAATGTTAAAAATGTGTAAAGACTAATTTAGAATGATA-GTC
* *
586309 ATAGTTTGGGAATGAAATTCAAATGTTCAAAAA-GTGTAAAGACTAATTTAGAATGATATTC
1 ATAGTTTGGG-ATGAAATTAAAATGTT-AAAAATGTGTAAAGACTAATTTAGAATGATAGTC
* * * *
586370 ATAGTTTAGGGATGAAATTAAAATATTTAAAAAT-TG-AAGGACCAATTTAAAATGA
1 ATAGTTT-GGGATGAAATTAAAAT-GTTAAAAATGTGTAAAGACTAATTTAGAATGA
586425 AGGCCACACT
Statistics
Matches: 97, Mismatches: 13, Indels: 12
0.80 0.11 0.10
Matches are distributed among these distances:
60 26 0.27
61 60 0.62
62 11 0.11
ACGTcount: A:0.43, C:0.05, G:0.20, T:0.32
Consensus pattern (60 bp):
ATAGTTTGGGATGAAATTAAAATGTTAAAAATGTGTAAAGACTAATTTAGAATGATAGTC
Found at i:589033 original size:23 final size:23
Alignment explanation
Indices: 589005--589052 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
588995 ATCAAATACA
* *
589005 ATAATATATTAGGTAGCGCTTAT
1 ATAATATAATAGGTAACGCTTAT
589028 ATAATATAATAGGTAACGCTTAT
1 ATAATATAATAGGTAACGCTTAT
589051 AT
1 AT
589053 TGACCTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.40, C:0.08, G:0.15, T:0.38
Consensus pattern (23 bp):
ATAATATAATAGGTAACGCTTAT
Found at i:589783 original size:182 final size:182
Alignment explanation
Indices: 589476--589922 Score: 734
Period size: 182 Copynumber: 2.5 Consensus size: 182
589466 TTTTTACTAT
* *
589476 CGGTTTTGTCATTTCGAGATCGATTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATAC
1 CGGTTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATAC
* * *
589541 ATTTTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTTTCTTTTAAATTCCAAAAGTGT
66 ATTTTTATAAAGTATCGACACTTTATTAGCGCTATAACTTATTCTCTTTTAAATTCCAAAAGTGT
* * **
589606 CGATACTTATAGTAAAGTATCGACACTATCAACATATCCGGTACCTTTTTAC
131 CGATACCTATAATAAAGTATCGACACTATCAACATATCCGGTACCGCTTTAC
589658 CGGTTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATAC
1 CGGTTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATAC
589723 ATTTTTATAAAGTATCGACACTTTATTAGCGCTATAACTTATTCTCTTTTAAATTCCAAAAGTGT
66 ATTTTTATAAAGTATCGACACTTTATTAGCGCTATAACTTATTCTCTTTTAAATTCCAAAAGTGT
*
589788 CGATACCTATAATAAAGTATCGACACTATCAACATATCCGGTAGCGCTTTAC
131 CGATACCTATAATAAAGTATCGACACTATCAACATATCCGGTACCGCTTTAC
* ** * * *
589840 CTGTTTTGTCATTTATAGACCGGTTTTGTCAT-TTTTTGACATGTTTTATTGTTATGGATCAATA
1 CGGTTTTGTCATTTCGAGACCGGTTTTGTCATATTTTT-ACCTGTTATATTGTTATGGATCGATA
589904 CATTTTTATAAAGTATCGA
65 CATTTTTATAAAGTATCGA
589923 AACTATCAAC
Statistics
Matches: 248, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
181 5 0.02
182 243 0.98
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (182 bp):
CGGTTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATAC
ATTTTTATAAAGTATCGACACTTTATTAGCGCTATAACTTATTCTCTTTTAAATTCCAAAAGTGT
CGATACCTATAATAAAGTATCGACACTATCAACATATCCGGTACCGCTTTAC
Found at i:589885 original size:20 final size:20
Alignment explanation
Indices: 589841--589886 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
589831 GCGCTTTACC
*
589841 TGTTTTGTCATTTATAGACC
1 TGTTTTGTCATTTATAGACA
* * *
589861 GGTTTTGTCATTTTTTGACA
1 TGTTTTGTCATTTATAGACA
589881 TGTTTT
1 TGTTTT
589887 ATTGTTATGG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.15, C:0.11, G:0.17, T:0.57
Consensus pattern (20 bp):
TGTTTTGTCATTTATAGACA
Found at i:593099 original size:199 final size:199
Alignment explanation
Indices: 592748--594192 Score: 2148
Period size: 199 Copynumber: 7.2 Consensus size: 199
592738 GGTTATAATT
* * * * *
592748 ATTATGTTTTTCGATATTTTTGGGATCGACAATTGTTATAAATGTATCGAAACTTTGTT-GTGCA
1 ATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTT-TTAGGGCA
* * * *
592812 CTTGGTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTCCATTTGTGTTGATACTGTT
65 CTTGTTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTT
* * * * *
592877 TGTACACCTGTTTTCTCAAAAACCGGTACATTTAGACCGGTTATATTGTTAATTTACTTATTACA
130 TGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATTGATAATTTACCTATTACA
592942 TTATA
195 TTATA
* * * *
592947 ATTATAGTTTTCGATGTTTTTGGGATCGACAATTGTTATAAATGTATCGAAACTTTGTT-GTGCA
1 ATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTT-TTAGGGCA
* * *
593011 CTTGGTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTCCATTTGTGTCGATACTGTT
65 CTTGTTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTT
* * * *
593076 TGTACACCTGTTTTCTTAAAAACCGGTACATTTAGACCGTTTATATTGTTAATTTACCTATTACA
130 TGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATTGATAATTTACCTATTACA
593141 TTATA
195 TTATA
*
593146 ATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTACAAATGTATCGACACTTTTTAGGGCAC
1 ATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGGGCAC
*
593211 TTGTTTTTGAAATACATTCTGAACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTTT
66 TTGTTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTTT
* * *
593276 GTACACATGTTTTCTCAAAAATCGATATATTTAGACCGTTTACA-TGAATAATTTACCTATTACA
131 GTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATTG-ATAATTTACCTATTACA
593340 TTATA
195 TTATA
*
593345 ATTATGGTTTAT-GATGTTTTTGGGATCGACACTTGTTACAAATGTATCGACACTTTTTAGGGCA
1 ATTATGGTTT-TCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGGGCA
*
593409 CTTGTTTTTGAAATACATTCTGGACAAAAAGTATCGACACGTGTTCTATTTGTGTCGATACTTTT
65 CTTGTTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTT
* *
593474 TGTACACGTGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATTAATAATTTACCTATTACA
130 TGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATTGATAATTTACCTATTACA
593539 TTATA
195 TTATA
* *
593544 ATTATGGTTTTCGATGTTTTTGTGATCGACACTTGTTATAAATGTATCGACACTTTTTAGGTCAC
1 ATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGGGCAC
* *
593609 TTGTTTTTGAAATACATTCTGGAAAAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTT
66 TTGTTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTTT
* *
593674 -TACACCTGTTTTCTCAAAAACCGGTATATTTAGACCTTTTACATGGATAATTTACCTATTACAT
131 GTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATTGATAATTTACCTATTACAT
593738 TATA
196 TATA
*
593742 ATTATGGTTTTCGATGTTTTTGTGATCGACACTTGTTATAAATGTATCGACACTTTTTAGGGCAC
1 ATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGGGCAC
* *
593807 TTGTTTTTGAAATACATTCTGGAGAAAAAGTATCGACACTTGTTCTATTTGTGTCGACACTTTTT
66 TTGTTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTTT
* *
593872 TTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCTTTTACA-TGAATAATTTACCTATTACA
131 GTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATTG-ATAATTTACCTATTACA
593936 TTATA
195 TTATA
* *
593941 ATTATGGTTTTCGATGTTTTTGTGAGCGACACTTGTTATAAATGTATCGACACTTTTTAGGGCAC
1 ATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGGGCAC
*
594006 TTGCTTTTGAAATACATTCTGGACAAAAAGTATCGACACAAAAAAGTATCGACAATTGTTCTATT
66 TTGTTTTTGAAATACATTCTGGACAAAAAGTAT-----C------G-A-C-AC--TTGTTCTATT
* * **
594071 TGTGTCGAAACTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACATTTTACA-TGAA
115 TGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATTG-A
594135 TAATTTACCTATTACATTATA
179 TAATTTACCTATTACATTATA
* * *
594156 ATTATGTTTTTTGATGTTTTCGGGATCGACACTTGTT
1 ATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTT
594193 TTATTTGTGT
Statistics
Matches: 1167, Mismatches: 56, Indels: 30
0.93 0.04 0.02
Matches are distributed among these distances:
198 196 0.17
199 840 0.72
200 2 0.00
204 1 0.00
210 1 0.00
211 1 0.00
212 1 0.00
213 2 0.00
215 123 0.11
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (199 bp):
ATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGGGCAC
TTGTTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTTT
GTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATTGATAATTTACCTATTACAT
TATA
Found at i:596804 original size:15 final size:15
Alignment explanation
Indices: 596780--596821 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
596770 AGGAGGTTGT
596780 GGTTGAGAAGAGCTG
1 GGTTGAGAAGAGCTG
* *
596795 GGTTGGGAAGAGGTG
1 GGTTGAGAAGAGCTG
596810 GGTTGAGAAGAG
1 GGTTGAGAAGAG
596822 ATTTGAGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.26, C:0.02, G:0.52, T:0.19
Consensus pattern (15 bp):
GGTTGAGAAGAGCTG
Found at i:597453 original size:199 final size:199
Alignment explanation
Indices: 597174--598267 Score: 1762
Period size: 199 Copynumber: 5.5 Consensus size: 199
597164 TTTAAATCGG
* * * *
597174 TATATTTAGACCGGTTATATTACTAATTTACTTATTACATTATAATTATGGTTTTCGATGTTTTT
1 TATATTTATACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGATATTTTT
597239 GGGATCGACACTTGTTACAAATGTATCGACACTTTTTAGGGCACTTGTTTTTGAAATACATTCTG
66 GGGATCGACACTTGTTACAAATGTATCGACACTTTTTAGGGCACTTGTTTTTGAAATACATTCTG
* *
597304 GACAAAAAGTATCGACAATTGTTCTATTTGTGTCGATACTTTTTGTACACATGTTTTCTCAAAAA
131 GACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAA
*
597369 CCGG
196 CCGA
** * * *
597373 TATATTTATACCATTTACA-TGAATAATTTACCTATTACATTATAATTATGGTTTTTGATATTTT
1 TATATTTATACCGGTTATATTG-CTAATTTACCTATTACATTATAATTATGGTTTTCGATATTTT
* *
597437 TGGGATCAACACTTGTTACAAATGTATCGACACTTTTTAGGGCACTTGTTTTTTAAATACATTCT
65 TGGGATCGACACTTGTTACAAATGTATCGACACTTTTTAGGGCACTTGTTTTTGAAATACATTCT
597502 GGACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAA
130 GGACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAA
*
597567 ACCAA
195 ACCGA
* *
597572 TATATTT-TGACCGGTTATATTGCTAATTTACCTATTACATTATAATAATTGTTTTCGATATTTT
1 TATATTTAT-ACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGATATTTT
* * *
597636 TGGGATCGACACTTGTTACAAATGTATCGATACTTTTTAGGGCACTTGTTTTTTAAATACATTAT
65 TGGGATCGACACTTGTTACAAATGTATCGACACTTTTTAGGGCACTTGTTTTTGAAATACATTCT
* *
597701 GGACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACATTTTGTACACATGTTTTCTCAAAA
130 GGACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAA
*
597766 ACAGA
195 ACCGA
* * * *
597771 TATATTTATACCGTTTACA-TGAATAATTTACCTATTACATTATAATTATGGTTTTTGATATTTT
1 TATATTTATACCGGTTATATTG-CTAATTTACCTATTACATTATAATTATGGTTTTCGATATTTT
*
597835 TGGGATCGACATTTGTTACAAATGTATCGACACTTTTTAGGGCACTTGTTTTTGAAATACATTCT
65 TGGGATCGACACTTGTTACAAATGTATCGACACTTTTTAGGGCACTTGTTTTTGAAATACATTCT
*
597900 GGACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACATTTTGTACACCTGTTTTCTCAAAA
130 GGACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAA
* *
597965 ACTGG
195 ACCGA
* * * *
597970 TATATTTAGACCGGTTATATTGCTAATTTACCTATTATATTATAATTATGGTTTTCAATGTTTTT
1 TATATTTATACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGATATTTTT
*
598035 GGGATCGACAATTGTTACAAATGTATCGACACTTTTTAGGGCACTTGTTTTTGAAATACATTCTG
66 GGGATCGACACTTGTTACAAATGTATCGACACTTTTTAGGGCACTTGTTTTTGAAATACATTCTG
598100 GACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAA
131 GACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAA
*
598165 CTGA
196 CCGA
* * * *
598169 TATATTTAGACCAGTTATATTGCTAATTTACCTATGACATTATAATTATGGTTTTCGATGTTTTT
1 TATATTTATACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGATATTTTT
*
598234 GGGATCGACACTTGTTATAAATGTATCGACACTT
66 GGGATCGACACTTGTTACAAATGTATCGACACTT
598268 AAGTTTACCT
Statistics
Matches: 830, Mismatches: 59, Indels: 12
0.92 0.07 0.01
Matches are distributed among these distances:
198 4 0.00
199 821 0.99
200 5 0.01
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.42
Consensus pattern (199 bp):
TATATTTATACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGATATTTTT
GGGATCGACACTTGTTACAAATGTATCGACACTTTTTAGGGCACTTGTTTTTGAAATACATTCTG
GACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAA
CCGA
Found at i:598658 original size:18 final size:19
Alignment explanation
Indices: 598611--598659 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
598601 TTACATTCAC
*
598611 ATACAAAATTATAAATCGT
1 ATACAAAATTAAAAATCGT
*
598630 ATACAAAATTAAAAATCTT
1 ATACAAAATTAAAAATCGT
598649 ATAC-AAATTAA
1 ATACAAAATTAA
598660 CCATACATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
18 7 0.25
19 21 0.75
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTAAAAATCGT
Found at i:601761 original size:15 final size:15
Alignment explanation
Indices: 601737--601778 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
601727 ATGAGGTTAT
601737 GGTTGAGAAGAGCTG
1 GGTTGAGAAGAGCTG
* *
601752 GGTTGGGAAGAGGTG
1 GGTTGAGAAGAGCTG
601767 GGTTGAGAAGAG
1 GGTTGAGAAGAG
601779 ATTTGAGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.26, C:0.02, G:0.52, T:0.19
Consensus pattern (15 bp):
GGTTGAGAAGAGCTG
Found at i:602412 original size:199 final size:199
Alignment explanation
Indices: 602126--603027 Score: 1545
Period size: 199 Copynumber: 4.5 Consensus size: 199
602116 TTTTCAATTT
*
602126 AAACCGGTATATTTAGACCGGTTATATTACTAATTTACCTATTACATTATAATTATGGTTTTCGA
1 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
* * *
602191 TGTTTTTGGGATCGACACTTGTTACAAATATATCGACACATTTTAGGGCACTTGGTTTTGAAATA
66 TGTTTTTGGGATCGACACTTGTTACAAATGTATCGACACTTTTTAGGGCACTTGTTTTTGAAATA
*
602256 CATTCTGGACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTTTGTACACCTATTTTC
131 CATTCTGGACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTTTGTACACATATTTTC
*
602321 TTAA
196 TCAA
*
602325 AAACTGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
1 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
*
602390 TGTTTTTAGGATCGACACTTGTTACAAATGTATCGACACTTTTTAGGGCACTTGTTTTTGAAATA
66 TGTTTTTGGGATCGACACTTGTTACAAATGTATCGACACTTTTTAGGGCACTTGTTTTTGAAATA
* * *
602455 CATTCTGGACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTTTGTACACCTGTTTTT
131 CATTCTGGACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTTTGTACACATATTTTC
602520 TCAA
196 TCAA
* ** * *
602524 AAACCGGTATATTTATACCATTTACA-TGAATAATTTACCTATTACATTATAATTATGGTTTTCG
1 AAACCGGTATATTTAGACCGGTTATATTG-CTAATTTACCTATTACATTATAATTATGGTTTTCG
*
602588 ATATTTTTGGGATCGACACTTGTTACAAATGTATCGACACTTTTTAGGGCACTTGTTTTTGAAAT
65 ATGTTTTTGGGATCGACACTTGTTACAAATGTATCGACACTTTTTAGGGCACTTGTTTTTGAAAT
* *
602653 ACATTCTGGATAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTTTGTACACATGTTTT
130 ACATTCTGGACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTTTGTACACATATTTT
*
602718 CTCAG
195 CTCAA
* *
602723 AAACCGGTATTTTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATAGTTTTCGA
1 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
602788 TGTTTTTGGGATCGACACTTGTTACAAATGTATCGACACTTTTTAGGGCACTTGTTTTTGAAATA
66 TGTTTTTGGGATCGACACTTGTTACAAATGTATCGACACTTTTTAGGGCACTTGTTTTTGAAATA
602853 CATTCTGGACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTTTGTACACATATTTTC
131 CATTCTGGACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTTTGTACACATATTTTC
602918 TCAA
196 TCAA
* * *
602922 AAACCTGTATATTTAGACCGGTTATATTGCTAATTTACATATGACATTATAATTATGGTTTTCGA
1 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
* *
602987 TGTTTTTGGGATCGACACTTGTTATAAATGTATCAACACTT
66 TGTTTTTGGGATCGACACTTGTTACAAATGTATCGACACTT
603028 AAGTTTACCT
Statistics
Matches: 662, Mismatches: 39, Indels: 4
0.94 0.06 0.01
Matches are distributed among these distances:
198 2 0.00
199 658 0.99
200 2 0.00
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (199 bp):
AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
TGTTTTTGGGATCGACACTTGTTACAAATGTATCGACACTTTTTAGGGCACTTGTTTTTGAAATA
CATTCTGGACAAAAAGTATCGACACTTGTTCTATTTGTGTCGATACTTTTTGTACACATATTTTC
TCAA
Found at i:603418 original size:18 final size:19
Alignment explanation
Indices: 603371--603419 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
603361 TTACATTCAC
*
603371 ATACAAAATTATAAATCGT
1 ATACAAAATTAAAAATCGT
*
603390 ATACAAAATTAAAAATCTT
1 ATACAAAATTAAAAATCGT
603409 ATAC-AAATTAA
1 ATACAAAATTAA
603420 CCATGCATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
18 7 0.25
19 21 0.75
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTAAAAATCGT
Found at i:604906 original size:18 final size:18
Alignment explanation
Indices: 604883--604921 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
604873 TTCTCCTCAT
604883 TTCCTCCATCTT-TTCTTC
1 TTCCTCCATCTTCTT-TTC
604901 TTCCTCCATCTTCTTTTC
1 TTCCTCCATCTTCTTTTC
604919 TTC
1 TTC
604922 AAATTTTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.05, C:0.38, G:0.00, T:0.56
Consensus pattern (18 bp):
TTCCTCCATCTTCTTTTC
Found at i:605620 original size:22 final size:21
Alignment explanation
Indices: 605592--605647 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 21
605582 AACCTGCATT
*
605592 TATAATAAAAGTTATCATTTTA
1 TATAATAAAA-CTATCATTTTA
605614 TATAATAACTATACTATCATTTTA
1 TATAATAA--A-ACTATCATTTTA
605638 TATAA-AAAAC
1 TATAATAAAAC
605648 AAAAACATTC
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
20 2 0.07
21 1 0.03
22 8 0.27
23 2 0.07
24 16 0.53
25 1 0.03
ACGTcount: A:0.48, C:0.09, G:0.02, T:0.41
Consensus pattern (21 bp):
TATAATAAAACTATCATTTTA
Found at i:606943 original size:19 final size:20
Alignment explanation
Indices: 606896--606944 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
606886 CATTTATACA
606896 ACCTA-AAATATCATTTTCT
1 ACCTATAAATATCATTTTCT
*
606915 ACATAT-AATATCATTTT-T
1 ACCTATAAATATCATTTTCT
606933 ACCTATAAATAT
1 ACCTATAAATAT
606945 TAACTAAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 6 0.23
19 20 0.77
ACGTcount: A:0.41, C:0.16, G:0.00, T:0.43
Consensus pattern (20 bp):
ACCTATAAATATCATTTTCT
Found at i:607656 original size:182 final size:182
Alignment explanation
Indices: 607328--608533 Score: 1605
Period size: 182 Copynumber: 6.6 Consensus size: 182
607318 TACATGTACT
* * * *
607328 TATTAAAGTATCGACACTTTCAACATATCCGGTATCTATTTACCAGTTTTGTCA-TTTTGAGAC-
1 TATTAAATTATCGACACTTTCAATATATCCGGTAACT-TTTACCGGTTTTGTCATTTTTGAGACA
* ** *
607391 TGGTTTTATCATATTTTTATCTGTTATATT-TTTTGGATCGATACATTTTCATAAAGTATTGACA
65 T-GTTTTATCATATTTTTACCTGTTATATTGTTAAGGATCGATACATTTTCATAAAGTATCGACA
* * * * *
607455 CTTTTTAAGCGCTATAACTTCTTCTCTTTTAAATTAAAAAAGTATCGATACTTA
129 CTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
* * * * * *
607509 TATTAAATTATCGATACTTTTAACATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTTAGACTT
1 TATTAAATTATCGACACTTTCAATATATCCGGTAACTTTTACCGGTTTTGTCATTTTTGAGACAT
* * *
607574 GTTTTATCATATTTTTACCTGTTATATCGGTAAGGATCGATACATTTTCATAAAGTGTCGACACT
66 GTTTTATCATATTTTTACCTGTTATATTGTTAAGGATCGATACATTTTCATAAAGTATCGACACT
* * *
607639 TTTTAGGCGCTATAACTTCTTATCTTTTAAATTCAGAAAGTGTCGATACTAA
131 TTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
* **
607691 TATTAAATTATCGACACTTTCAATATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTGAGACCG
1 TATTAAATTATCGACACTTTCAATATATCCGGTAACTTTTACCGGTTTTGTCATTTTTGAGACAT
** * **
607756 GTTTTATCATATTTTTACCTGTTATATTGTTGTGGATCGATATATTTTTTTAAAGTATCGACACT
66 GTTTTATCATATTTTTACCTGTTATATTGTTAAGGATCGATACATTTTCATAAAGTATCGACACT
* * *
607821 TTATAGGCCCTATAACTTCTTCTCTTTTAAATTCAGAAAGTTTCAATACTTA
131 TTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
* * * *
607873 TATTAAATTATCGACACTTTCAATATATCCGGTATCATTTTACTGGTTTTGTCAATTTTGTGACA
1 TATTAAATTATCGACACTTTCAATATATCCGGTAAC-TTTTACCGGTTTTGTCATTTTTGAGACA
* *
607938 TGTTTTATCATATTTGTACCTGTTATATTGTTATA-GATCGATACATTTTCATAAAGTGTCGACA
65 TGTTTTATCATATTTTTACCTGTTATATTGTTA-AGGATCGATACATTTTCATAAAGTATCGACA
* * *
608002 CTTTATAAGCGCAATAACTTTTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
129 CTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
* * * * *
608056 TATTAAATTATCGACAGTTTTAACATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTGAGACCT
1 TATTAAATTATCGACACTTTCAATATATCCGGTAACTTTTACCGGTTTTGTCATTTTTGAGACAT
* * *
608121 ATTTTATCATATTTTTACCTGTTATATTAG-TAAGGATCGATACATTTTAATAAAGTGTCGACAC
66 GTTTTATCATATTTTTACCTGTTATATT-GTTAAGGATCGATACATTTTCATAAAGTATCGACAC
* *
608185 TTTTTAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTAA
130 TTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
* * *
608238 TATTAAATTATCGACACTTTCAATATATCTGGTATCGTTTTACCGGTTTTGTCAATTTTGAGACA
1 TATTAAATTATCGACACTTTCAATATATCCGGTAAC-TTTTACCGGTTTTGTCATTTTTGAGACA
** * * **
608303 TGTTTTATCATATTTTTACCTGTTATATTGTTGTGGATTGATATATTTTTTTAAAGTATCGACAC
65 TGTTTTATCATATTTTTACCTGTTATATTGTTAAGGATCGATACATTTTCATAAAGTATCGACAC
* *
608368 TTTATAGGTGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTTTCGATACTTA
130 TTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
* * * *
608421 TATTAAATTATCGACACTTTCAATATATCGGGTAGCGTTTTACCGGTTTTGTCA-TTTTGGGACC
1 TATTAAATTATCGACACTTTCAATATATCCGGTAAC-TTTTACCGGTTTTGTCATTTTTGAGACA
* * * * * * * *
608485 GGTTTTGTCATATTTGTACCTGTAATATTGCTATGGAGCGATCCATTTT
65 TGTTTTATCATATTTTTACCTGTTATATTGTTAAGGATCGATACATTTT
608534 TCATTTGTAT
Statistics
Matches: 905, Mismatches: 111, Indels: 17
0.88 0.11 0.02
Matches are distributed among these distances:
180 14 0.02
181 68 0.08
182 483 0.53
183 340 0.38
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.44
Consensus pattern (182 bp):
TATTAAATTATCGACACTTTCAATATATCCGGTAACTTTTACCGGTTTTGTCATTTTTGAGACAT
GTTTTATCATATTTTTACCTGTTATATTGTTAAGGATCGATACATTTTCATAAAGTATCGACACT
TTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
Found at i:608032 original size:365 final size:363
Alignment explanation
Indices: 607328--608533 Score: 1691
Period size: 365 Copynumber: 3.3 Consensus size: 363
607318 TACATGTACT
* * * *
607328 TATTAAAGTATCGACACTTTCAACATATCCGGTATCTATTTACCAGTTTTGTCATTTTGAGACTG
1 TATTAAATTATCGACACTTTCAACATATCCGGTAACT-TTTACCGGTTTTGTCATTTTGAGACCG
* * * *
607393 GTTTTATCATATTTTTATCTGTTATATT-TTTTGGATCGATACATTTTCATAAAGTATTGACACT
65 GTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTAATAAAGTATCGACACT
* * *
607457 TTTTAAGCGCTATAACTTCTTCTCTTTTAAATTAAAAAAGTATCGATACTTATATTAAATTATCG
130 TTTTAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTATCGATACTTATATTAAATTATCG
* * * * * * *
607522 ATACTTTTAACATATCCGGTAACTTTTTCCGGTTTTGTC-ATTTTTTAGACTTGTTTTATCATAT
195 ACACTTTCAATATATCCGGTATCTTTTACCGGTTTTGTCAATTTTGT-GACATGTTTTATCATAT
* * *
607586 TTTTACCTGTTATATCGGTA-AGGATCGATACATTTTCATAAAGTGTCGACACTTTTTAGGCGCT
259 TTTTACCTGTTATATTGTTATA-GATCGATACATTTTCATAAAGTGTCGACACTTTATAGGCGCT
* *
607650 ATAACTTCTTATCTTTTAAATTCAGAAAGTGTCGATACTAA
323 ATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
* *
607691 TATTAAATTATCGACACTTTCAATATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTGAGACCG
1 TATTAAATTATCGACACTTTCAACATATCCGGTAACTTTTACCGGTTTTGTCA-TTTTGAGACCG
* * **
607756 GTTTTATCATATTTTTACCTGTTATATTGTTGTGGATCGATATATTTTTTTAAAGTATCGACACT
65 GTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTAATAAAGTATCGACACT
* * * *
607821 TTATAGGCCCTATAACTTCTTCTCTTTTAAATTCAGAAAGTTTCAATACTTATATTAAATTATCG
130 TTTTAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTATCGATACTTATATTAAATTATCG
*
607886 ACACTTTCAATATATCCGGTATCATTTTACTGGTTTTGTCAATTTTGTGACATGTTTTATCATAT
195 ACACTTTCAATATATCCGGTATC-TTTTACCGGTTTTGTCAATTTTGTGACATGTTTTATCATAT
* * *
607951 TTGTACCTGTTATATTGTTATAGATCGATACATTTTCATAAAGTGTCGACACTTTATAAGCGCAA
259 TTTTACCTGTTATATTGTTATAGATCGATACATTTTCATAAAGTGTCGACACTTTATAGGCGCTA
*
608016 TAACTTTTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
324 TAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
* * * *
608056 TATTAAATTATCGACAGTTTTAACATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTGAGACCT
1 TATTAAATTATCGACACTTTCAACATATCCGGTAACTTTTACCGGTTTTGTCA-TTTTGAGACCG
* * *
608121 ATTTTATCATATTTTTACCTGTTATATTAG-TAAGGATCGATACATTTTAATAAAGTGTCGACAC
65 GTTTTATCATATTTTTACCTGTTATATT-GTTATGGATCGATACATTTTAATAAAGTATCGACAC
* *
608185 TTTTTAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTAATATTAAATTATC
129 TTTTTAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTATCGATACTTATATTAAATTATC
* *
608250 GACACTTTCAATATATCTGGTATCGTTTTACCGGTTTTGTCAATTTTGAGACATGTTTTATCATA
194 GACACTTTCAATATATCCGGTATC-TTTTACCGGTTTTGTCAATTTTGTGACATGTTTTATCATA
* * * * ** * *
608315 TTTTTACCTGTTATATTGTTGTGGATTGATATATTTTTTTAAAGTATCGACACTTTATAGGTGCT
258 TTTTTACCTGTTATATTGTTATAGATCGATACATTTTCATAAAGTGTCGACACTTTATAGGCGCT
*
608380 ATAACTTCTTCTCTTTTAAATTCAGAAAGTTTCGATACTTA
323 ATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
* * * *
608421 TATTAAATTATCGACACTTTCAATATATCGGGTAGCGTTTTACCGGTTTTGTCATTTTGGGACCG
1 TATTAAATTATCGACACTTTCAACATATCCGGTAAC-TTTTACCGGTTTTGTCATTTTGAGACCG
* * * * * *
608486 GTTTTGTCATATTTGTACCTGTAATATTGCTATGGAGCGATCCATTTT
65 GTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTT
608534 TCATTTGTAT
Statistics
Matches: 751, Mismatches: 84, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
362 14 0.02
363 71 0.09
364 109 0.15
365 533 0.71
366 24 0.03
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.44
Consensus pattern (363 bp):
TATTAAATTATCGACACTTTCAACATATCCGGTAACTTTTACCGGTTTTGTCATTTTGAGACCGG
TTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTAATAAAGTATCGACACTT
TTTAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTATCGATACTTATATTAAATTATCGA
CACTTTCAATATATCCGGTATCTTTTACCGGTTTTGTCAATTTTGTGACATGTTTTATCATATTT
TTACCTGTTATATTGTTATAGATCGATACATTTTCATAAAGTGTCGACACTTTATAGGCGCTATA
ACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
Found at i:608487 original size:20 final size:21
Alignment explanation
Indices: 608462--608500 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
608452 GTAGCGTTTT
608462 ACCGGTTTTGTCAT-TTTGGG
1 ACCGGTTTTGTCATATTTGGG
608482 ACCGGTTTTGTCATATTTG
1 ACCGGTTTTGTCATATTTG
608501 TACCTGTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.13, C:0.15, G:0.26, T:0.46
Consensus pattern (21 bp):
ACCGGTTTTGTCATATTTGGG
Found at i:608498 original size:547 final size:545
Alignment explanation
Indices: 607328--608533 Score: 1937
Period size: 547 Copynumber: 2.2 Consensus size: 545
607318 TACATGTACT
* * * *
607328 TATTAAAGTATCGACACTTTCAACATATCCGGTATCTATTTACCAGTTTTGTCATTTTGAGACTG
1 TATTAAATTATCGACACTTTCAATATATCCGGTATCT-TTTACCGGTTTTGTCATTTTGAGACAG
* * * *
607393 GTTTTATCATATTTTTATCTGTTATATT-TTTTGGATCGATACATTTTCATAAAGTATTGACACT
65 GTTTTATCATATTTGTACCTGTTATATTGTTATGGATCGATACATTTTCATAAAGTATCGACACT
* *
607457 TTTTAAGCGCTATAACTTCTTCTCTTTTAAATTAAAAAAGTATCGATACTTATATTAAATTATCG
130 TTATAAGCGCAATAACTTCTTCTCTTTTAAATTAAAAAAGTATCGATACTTATATTAAATTATCG
* * * *
607522 ATACTTTTAACATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTTAGACTTGTTTTATCATATT
195 ACACTTTTAACATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTGAGACCTATTTTATCATATT
* *
607587 TTTACCTGTTATATCGGTAAGGATCGATACATTTTCATAAAGTGTCGACACTTTTTAGGCGCTAT
260 TTTACCTGTTATATCAGTAAGGATCGATACATTTTAATAAAGTGTCGACACTTTTTAGGCGCTAT
607652 AACTTCTTATCTTTTAAATTCAGAAAGTGTCGATACTAATATTAAATTATCGACACTTTCAATAT
325 AACTTCTTATCTTTTAAATTCAGAAAGTGTCGATACTAATATTAAATTATCGACACTTTCAATAT
* * *
607717 ATCCGGTAACTTTTTCCGGTTTTGTCATTTTTGAGACCGGTTTTATCATATTTTTACCTGTTATA
390 ATCCGGTAACTTTTACCGGTTTTGTCAATTTTGAGACAGGTTTTATCATATTTTTACCTGTTATA
607782 TTGTTGTGGATCGATATATTTTTTTAAAGTATCGACACTTTATAGGCCCTATAACTTCTTCTCTT
455 TTGTTGTGGATCGATATATTTTTTTAAAGTATCGACACTTTATAGGCCCTATAACTTCTTCTCTT
607847 TTAAATTCAGAAAGTTTCAATACTTA
520 TTAAATTCAGAAAGTTTCAATACTTA
* *
607873 TATTAAATTATCGACACTTTCAATATATCCGGTATCATTTTACTGGTTTTGTCAATTTTGTGACA
1 TATTAAATTATCGACACTTTCAATATATCCGGTATC-TTTTACCGGTTTTGTC-ATTTTGAGACA
* * *
607938 TGTTTTATCATATTTGTACCTGTTATATTGTTATAGATCGATACATTTTCATAAAGTGTCGACAC
64 GGTTTTATCATATTTGTACCTGTTATATTGTTATGGATCGATACATTTTCATAAAGTATCGACAC
* * * *
608003 TTTATAAGCGCAATAACTTTTTCTCTTTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATC
129 TTTATAAGCGCAATAACTTCTTCTCTTTTAAATTAAAAAAGTATCGATACTTATATTAAATTATC
*
608068 GACAGTTTTAACATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTGAGACCTATTTTATCATAT
194 GACACTTTTAACATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTGAGACCTATTTTATCATAT
*
608133 TTTTACCTGTTATATTAGTAAGGATCGATACATTTTAATAAAGTGTCGACACTTTTTAGGCGCTA
259 TTTTACCTGTTATATCAGTAAGGATCGATACATTTTAATAAAGTGTCGACACTTTTTAGGCGCTA
*
608198 TAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTAATATTAAATTATCGACACTTTCAATA
324 TAACTTCTTATCTTTTAAATTCAGAAAGTGTCGATACTAATATTAAATTATCGACACTTTCAATA
* * *
608263 TATCTGGTATCGTTTTACCGGTTTTGTCAATTTTGAGACATGTTTTATCATATTTTTACCTGTTA
389 TATCCGGTAAC-TTTTACCGGTTTTGTCAATTTTGAGACAGGTTTTATCATATTTTTACCTGTTA
* **
608328 TATTGTTGTGGATTGATATATTTTTTTAAAGTATCGACACTTTATAGGTGCTATAACTTCTTCTC
453 TATTGTTGTGGATCGATATATTTTTTTAAAGTATCGACACTTTATAGGCCCTATAACTTCTTCTC
*
608393 TTTTAAATTCAGAAAGTTTCGATACTTA
518 TTTTAAATTCAGAAAGTTTCAATACTTA
* * * *
608421 TATTAAATTATCGACACTTTCAATATATCGGGTAGCGTTTTACCGGTTTTGTCATTTTGGGACCG
1 TATTAAATTATCGACACTTTCAATATATCCGGTATC-TTTTACCGGTTTTGTCATTTTGAGACAG
* * * * *
608486 GTTTTGTCATATTTGTACCTGTAATATTGCTATGGAGCGATCCATTTT
65 GTTTTATCATATTTGTACCTGTTATATTGTTATGGATCGATACATTTT
608534 TCATTTGTAT
Statistics
Matches: 606, Mismatches: 51, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
545 47 0.08
546 36 0.06
547 336 0.55
548 187 0.31
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.44
Consensus pattern (545 bp):
TATTAAATTATCGACACTTTCAATATATCCGGTATCTTTTACCGGTTTTGTCATTTTGAGACAGG
TTTTATCATATTTGTACCTGTTATATTGTTATGGATCGATACATTTTCATAAAGTATCGACACTT
TATAAGCGCAATAACTTCTTCTCTTTTAAATTAAAAAAGTATCGATACTTATATTAAATTATCGA
CACTTTTAACATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTGAGACCTATTTTATCATATTT
TTACCTGTTATATCAGTAAGGATCGATACATTTTAATAAAGTGTCGACACTTTTTAGGCGCTATA
ACTTCTTATCTTTTAAATTCAGAAAGTGTCGATACTAATATTAAATTATCGACACTTTCAATATA
TCCGGTAACTTTTACCGGTTTTGTCAATTTTGAGACAGGTTTTATCATATTTTTACCTGTTATAT
TGTTGTGGATCGATATATTTTTTTAAAGTATCGACACTTTATAGGCCCTATAACTTCTTCTCTTT
TAAATTCAGAAAGTTTCAATACTTA
Found at i:609895 original size:81 final size:81
Alignment explanation
Indices: 609738--609895 Score: 201
Period size: 81 Copynumber: 2.0 Consensus size: 81
609728 AAATGGGTTA
* * * **
609738 TTTGAAATGTTAGGGAAATTGTGGGTTGTATGAAAAAATTTAATCTTTTGGCCTTGGTAGAGTCC
1 TTTGAAATGGTAGGGAAATTGTGGGTTGTATGAAAAAATTTAACCTTTTGGCCTTGATAGAAACC
609803 AAATTTAGATTTGTTG
66 AAATTTAGATTTGTTG
* * * *
609819 TTTGAATTGGTAGGGAAATTGTGGTTTTGTATG-AAAAGTTTAACCTTTTGGCCTTGATTGAAAC
1 TTTGAAATGGTAGGGAAATTGTGG-GTTGTATGAAAAAATTTAACCTTTTGGCCTTGATAGAAAC
* *
609883 CAAGTTTTGATTT
65 CAAATTTAGATTT
609896 TGGAGATATA
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
81 58 0.89
82 7 0.11
ACGTcount: A:0.27, C:0.07, G:0.24, T:0.42
Consensus pattern (81 bp):
TTTGAAATGGTAGGGAAATTGTGGGTTGTATGAAAAAATTTAACCTTTTGGCCTTGATAGAAACC
AAATTTAGATTTGTTG
Found at i:616176 original size:39 final size:39
Alignment explanation
Indices: 616132--616210 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
616122 TCTGCAAGGA
616132 GAGAGCACGGGTCCTGCAGGGCTGCACGTCTGCATGTGG
1 GAGAGCACGGGTCCTGCAGGGCTGCACGTCTGCATGTGG
616171 GAGAGCACGGGTCCTGCAGGGCTGCACGTCTGCATGTGG
1 GAGAGCACGGGTCCTGCAGGGCTGCACGTCTGCATGTGG
616210 G
1 G
616211 GGTCCTGCAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.15, C:0.25, G:0.42, T:0.18
Consensus pattern (39 bp):
GAGAGCACGGGTCCTGCAGGGCTGCACGTCTGCATGTGG
Found at i:616222 original size:23 final size:23
Alignment explanation
Indices: 616192--616235 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
616182 TCCTGCAGGG
616192 CTGCACGTCTGCATGTGGGGGTC
1 CTGCACGTCTGCATGTGGGGGTC
616215 CTGCACGTCTGCATGTGGGGG
1 CTGCACGTCTGCATGTGGGGG
616236 GCATGCAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.09, C:0.25, G:0.41, T:0.25
Consensus pattern (23 bp):
CTGCACGTCTGCATGTGGGGGTC
Found at i:616242 original size:23 final size:22
Alignment explanation
Indices: 616189--616242 Score: 81
Period size: 23 Copynumber: 2.4 Consensus size: 22
616179 GGGTCCTGCA
616189 GGGCTGCACGTCTGCATGTGGG
1 GGGCTGCACGTCTGCATGTGGG
*
616211 GGTCCTGCACGTCTGCATGTGGG
1 GG-GCTGCACGTCTGCATGTGGG
616234 GGGCATGCA
1 GGGC-TGCA
616243 ACTGTTGGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 3 0.11
23 25 0.89
ACGTcount: A:0.11, C:0.24, G:0.43, T:0.22
Consensus pattern (22 bp):
GGGCTGCACGTCTGCATGTGGG
Found at i:616969 original size:171 final size:173
Alignment explanation
Indices: 616707--617021 Score: 510
Period size: 172 Copynumber: 1.8 Consensus size: 173
616697 CGTTTTGTAA
* * *
616707 AATTTAAGGAATAAGAGTAAATTATTAAAAGTTGCTATACTATGCTGGAATTTAGTATTAGTATG
1 AATTTAAGAAATAAGAGTAAATTATAAAAAGTTGCTATACTATGCTGGAATTTAGTATTAATATG
*
616772 CTTAATTGGTTAAATTAGAAAGAATTTA-AAATTTA-TGGATTAAATTGCTAACTTTGAAAATGT
66 CTTAATTGGTTAAATTAGAAAGAATTTATAAATTTAGT-GATTAAATTGCAAACTTTGAAAATGT
616835 TGAGAACCAAATAGTAATTAGGGATCGTTTTGCAAAATTTGAGG
130 TGAGAACCAAATAGTAATTAGGGATCGTTTTGCAAAATTTGAGG
* * *
616879 AATTTAAGAAATTAGAGTAAATTATAAAAAGTTGGTATACTATGCTTGAA-TTAGTATTAATATG
1 AATTTAAGAAATAAGAGTAAATTATAAAAAGTTGCTATACTATGCTGGAATTTAGTATTAATATG
* *
616943 CTTAATTGGTTAAATTTGAAAGAATTTATAAATTTAGTGATTAAATTGCAAAGTTTGAAAATGTT
66 CTTAATTGGTTAAATTAGAAAGAATTTATAAATTTAGTGATTAAATTGCAAACTTTGAAAATGTT
*
617008 GAGAAGCAAATAGT
131 GAGAACCAAATAGT
617022 TAGGGATCAT
Statistics
Matches: 131, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
171 40 0.31
172 90 0.69
173 1 0.01
ACGTcount: A:0.41, C:0.05, G:0.18, T:0.37
Consensus pattern (173 bp):
AATTTAAGAAATAAGAGTAAATTATAAAAAGTTGCTATACTATGCTGGAATTTAGTATTAATATG
CTTAATTGGTTAAATTAGAAAGAATTTATAAATTTAGTGATTAAATTGCAAACTTTGAAAATGTT
GAGAACCAAATAGTAATTAGGGATCGTTTTGCAAAATTTGAGG
Found at i:618772 original size:6 final size:6
Alignment explanation
Indices: 618761--618797 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
618751 CAAGAAGGAC
618761 TGGGAG TGGGAG TGGGAG TGGGAG TGGGAG TGGGAG T
1 TGGGAG TGGGAG TGGGAG TGGGAG TGGGAG TGGGAG T
618798 TCTTCTCACC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.16, C:0.00, G:0.65, T:0.19
Consensus pattern (6 bp):
TGGGAG
Found at i:619295 original size:42 final size:41
Alignment explanation
Indices: 619261--619553 Score: 220
Period size: 37 Copynumber: 7.4 Consensus size: 41
619251 TTATATCAGT
619261 AAATATAAATCATTAAAGTCAAGTAAGTATTATTAATCATTA
1 AAAT-TAAATCATTAAAGTCAAGTAAGTATTATTAATCATTA
* * * *
619303 AAATTAAATCATTAAAATTAAGTAATTATTATTAAATTATTA
1 AAATTAAATCATTAAAGTCAAGTAAGTATTATT-AATCATTA
619345 AAATTAAATCATTAAAGT-AA-T---TATTATTAAATCA-TA
1 AAATTAAATCATTAAAGTCAAGTAAGTATTATT-AATCATTA
*
619381 AATCATTAAATCA-TAAAGT-AA-T---TATTATAAATCATTA
1 AA--ATTAAATCATTAAAGTCAAGTAAGTATTATTAATCATTA
* * *
619418 AAGTTAAATCATTAAA-TC-ATTAAAGTTAAATCATTAAATCATTA
1 AAATTAAATCATTAAAGTCAAGT-AAG-T--ATTATT-AATCATTA
*
619462 AAATTAAATCATTAAAGT-AA-T---TATTATTAAATCACTA
1 AAATTAAATCATTAAAGTCAAGTAAGTATTATT-AATCATTA
619499 AAATTAAATCATTAAAGT-AA-T---TATTATTAAATCATTA
1 AAATTAAATCATTAAAGTCAAGTAAGTATTATT-AATCATTA
*
619536 AAGTTAAATCATTAAAGT
1 AAATTAAATCATTAAAGT
619554 AATTATTATT
Statistics
Matches: 219, Mismatches: 15, Indels: 39
0.80 0.05 0.14
Matches are distributed among these distances:
35 10 0.05
36 14 0.06
37 97 0.44
38 9 0.04
39 1 0.00
40 1 0.00
41 29 0.13
42 28 0.13
43 4 0.02
44 24 0.11
45 2 0.01
ACGTcount: A:0.51, C:0.06, G:0.04, T:0.38
Consensus pattern (41 bp):
AAATTAAATCATTAAAGTCAAGTAAGTATTATTAATCATTA
Done.