Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006236.1 Hibiscus syriacus cultivar Beakdansim tig00014863_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110465

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
327--377
3
18.0
3
84
11
72
35
1
0
62
1.06
13418--13442
13
1.9
13
100
0
50
72
0
0
28
0.86
13409--13439
14
2.1
15
94
5
55
70
3
0
25
1.02
22086--22140
28
2.0
26
89
6
83
10
30
18
40
1.85
25259--25315
30
1.9
30
92
0
96
12
38
12
36
1.80
34537--35111
206
2.7
212
90
7
891
45
8
3
42
1.51
34526--35110
219
2.7
216
89
9
964
45
8
3
42
1.52
37024--37067
3
14.7
3
81
9
54
36
2
0
61
1.09
37023--37080
9
6.8
9
75
16
52
41
1
0
56
1.09
37023--37080
27
2.3
27
82
8
68
41
1
0
56
1.09
38730--38790
23
2.6
24
82
14
83
31
3
0
65
1.09
38730--38791
12
5.3
12
77
14
67
30
3
0
66
1.08
42958--42988
7
4.4
7
100
0
62
0
41
0
58
0.98
47983--48051
35
2.0
35
94
0
120
30
13
10
46
1.75
48393--48453
28
2.1
28
82
11
70
31
8
1
59
1.37
50471--50518
16
3.1
16
75
6
53
58
4
16
20
1.55
52049--52441
138
2.8
138
83
4
454
22
25
14
37
1.92
53413--53446
18
1.9
18
94
5
61
5
11
0
82
0.83
53413--53452
18
2.4
16
88
12
55
5
12
0
82
0.82
56124--56148
5
5.0
5
100
0
50
20
20
0
60
1.37
57216--57270
22
2.5
22
81
16
62
27
20
16
36
1.93
61536--61580
15
2.7
17
80
16
58
26
35
20
17
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61549--61596
15
3.2
15
93
0
78
31
33
18
16
1.94
61676--61758
29
2.9
29
94
1
141
19
20
14
45
1.85
61770--61815
12
3.8
12
91
0
56
39
26
6
28
1.81
61770--61816
24
2.0
24
87
8
69
38
25
6
29
1.81
61783--61816
12
2.8
12
95
0
59
41
26
2
29
1.70
62125--62301
64
2.8
64
81
5
178
25
19
22
32
1.97
62188--62333
64
2.3
64
82
7
163
26
19
18
34
1.95
67503--67550
15
3.2
15
88
5
62
31
31
22
14
1.94
67635--67712
29
2.7
29
98
2
149
17
21
15
44
1.86
67724--67769
12
3.8
12
91
0
56
39
26
6
28
1.81
67724--67770
24
2.0
24
87
8
69
38
25
6
29
1.81
67737--67770
12
2.8
12
95
0
59
41
26
2
29
1.70
68081--68259
64
2.8
63
82
5
216
25
18
22
33
1.97
68144--68305
64
2.5
64
83
6
186
25
20
20
32
1.97
72845--73115
64
4.2
64
79
10
236
26
17
19
35
1.94
78108--79176
535
2.0
535
98
0
2066
41
15
13
29
1.86
81418--81548
67
2.0
67
90
0
208
41
16
19
22
1.90
91187--91221
17
2.1
17
100
0
70
62
11
11
14
1.54
95029--95070
22
1.9
22
90
0
66
23
0
4
71
1.05
96576--96619
2
22.0
2
100
0
88
50
0
0
50
1.00
96880--97097
51
4.3
51
79
7
230
51
13
11
23
1.73
96881--97097
102
2.1
101
84
5
269
51
13
11
23
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97136--97188
2
28.5
2
76
14
51
47
1
1
49
1.23
98221--98255
2
17.5
2
100
0
70
48
0
0
51
1.00
98388--98446
30
1.9
32
86
6
86
11
15
1
71
1.23
99262--99299
20
1.9
20
100
0
76
15
28
42
13
1.85
99265--99308
20
2.2
20
87
0
61
18
31
43
6
1.76
108527--108680
71
2.2
70
84
10
197
52
7
23
16
1.69
108703--108757
8
6.6
8
78
15
58
80
1
16
1
0.90
108704--108763
26
2.3
26
85
8
77
81
1
15
1
0.85
108741--108765
13
1.9
13
100
0
50
80
0
12
8
0.92

Tables:   1

The End!