genome.fa.s6238.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006238.1 Hibiscus syriacus cultivar Beakdansim tig00014865_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70177

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1742--1793	25	2.1	25	89	7	79	61	0	3	34	1.14
3695--3821	42	3.0	41	87	4	164	12	25	33	28	1.92
7690--7742	23	2.3	23	86	0	79	26	26	28	18	1.98
7764--7969	103	2.0	103	95	0	369	37	24	12	25	1.90
9103--9134	16	2.0	16	93	0	55	31	9	12	46	1.73
9375--9497	31	4.0	31	93	2	203	20	19	21	38	1.94
13738--13891	31	5.0	31	95	1	265	19	18	22	38	1.93
15184--15311	64	2.0	67	89	7	201	27	18	19	34	1.95
15196--15356	64	2.5	63	81	5	162	27	20	17	34	1.95
16556--16701	42	3.5	42	90	5	192	34	24	20	20	1.97
16580--16720	21	6.9	20	85	10	180	31	25	21	20	1.98
16580--16712	63	2.1	61	94	2	230	31	27	21	19	1.97
16580--16720	40	3.4	41	91	5	191	31	25	21	20	1.98
16724--16776	21	2.5	21	90	0	88	18	20	30	30	1.97
16927--16990	2	32.0	2	100	0	128	50	0	0	50	1.00
18886--18995	42	2.6	42	95	0	202	11	20	39	29	1.88
21686--21760	21	3.7	21	74	12	59	50	1	0	48	1.09
24671--24722	21	2.5	21	81	3	61	38	19	25	17	1.93
24753--24805	20	2.7	20	93	0	88	24	28	20	26	1.99
25319--25386	20	3.5	19	82	6	82	47	25	16	11	1.80
25382--25452	19	3.7	19	90	3	115	12	21	21	45	1.84
25382--25547	20	9.1	19	75	16	145	12	22	21	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25435--25522	33	2.6	33	92	1	140	11	25	25	38	1.89
27570--27658	42	2.1	42	81	8	101	24	34	19	21	1.96
29022--29057	14	2.6	14	95	0	63	30	0	25	44	1.54
29236--29386	19	8.7	19	63	21	71	14	21	20	43	1.88
29240--29366	33	3.9	32	84	8	175	14	22	19	44	1.86
29233--29365	66	2.0	66	94	0	230	15	21	19	42	1.88
29570--29604	18	1.9	18	100	0	70	31	0	28	40	1.57
30730--30787	20	2.9	20	94	0	98	37	22	22	17	1.93
30810--30883	19	4.5	16	83	16	66	13	20	18	47	1.82
30806--30873	19	3.8	19	87	12	101	13	22	17	47	1.82
30990--31026	14	2.6	14	86	0	56	48	21	0	29	1.50
31389--31446	20	2.9	20	94	0	98	37	22	22	17	1.93
31473--31521	19	2.6	19	100	0	98	14	20	16	48	1.80
31638--31674	14	2.6	14	86	0	56	48	21	0	29	1.50
30542--31923	648	2.1	654	96	2	2571	35	19	12	32	1.89
33536--33602	19	3.5	19	83	4	89	37	23	23	14	1.93
33591--33694	14	6.9	14	77	16	109	48	25	17	9	1.77
33575--33680	32	3.3	32	94	1	185	46	23	18	11	1.82
33706--33800	18	5.6	17	74	20	85	11	20	23	45	1.83
33728--33784	14	3.8	14	78	17	69	8	17	26	47	1.77
33711--33800	32	2.8	32	96	1	162	11	18	23	46	1.81
33785--33839	20	2.8	19	83	8	65	16	23	23	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34320--34364	18	2.5	18	88	0	72	13	15	44	26	1.83
35985--36028	22	2.0	22	95	0	79	18	15	45	20	1.85
36216--36309	20	4.7	20	77	2	80	24	17	24	34	1.96
36236--36313	41	1.9	41	83	0	102	23	15	21	39	1.91
36196--36310	20	5.7	20	76	5	79	24	16	23	35	1.95
36299--36391	20	4.5	21	78	4	100	17	24	18	39	1.91
36299--36391	41	2.3	41	100	0	150	17	24	18	39	1.91
37776--37853	37	2.1	37	97	0	147	38	0	16	44	1.48
39225--39261	17	2.2	18	85	9	51	59	21	10	8	1.56
42628--42698	2	35.5	2	100	0	142	49	0	0	50	1.00
44521--44597	30	2.5	30	82	4	82	36	15	16	31	1.91
46574--46605	2	16.0	2	100	0	64	50	0	0	50	1.00
49162--49198	2	18.5	2	100	0	74	51	0	48	0	1.00
63435--63518	31	2.9	30	79	11	86	35	9	13	41	1.76
63394--63522	60	2.2	58	81	12	138	35	10	12	41	1.78
63617--63690	29	2.5	29	78	10	87	35	8	12	44	1.71
64070--64100	14	2.2	14	94	0	53	19	35	19	25	1.95
64833--64871	2	19.5	2	100	0	78	51	0	0	48	1.00

Tables:   1

The End!