Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000624.1 Hibiscus syriacus cultivar Beakdansim tig00001211_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111993
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Found at i:1284 original size:19 final size:19
Alignment explanation
Indices: 1262--1303 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
1252 TTATAAATAA
*
1262 CAGACAATTTTATTCATTC
1 CAGACAAATTTATTCATTC
*
1281 CAGACAAATTTATTCATTT
1 CAGACAAATTTATTCATTC
1300 CAGA
1 CAGA
1304 TTATTTTTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.36, C:0.19, G:0.07, T:0.38
Consensus pattern (19 bp):
CAGACAAATTTATTCATTC
Found at i:1974 original size:103 final size:103
Alignment explanation
Indices: 1847--2329 Score: 603
Period size: 103 Copynumber: 4.7 Consensus size: 103
1837 ATCGATACAT
* * * * * * * *
1847 ATATCGATACTGAAAACGAAAATAATAAAGCACTGTCGATATTATTGAGGCAGTACCGATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTACTGAGGCAGTACCGATACTGT
* * *
1912 CAAATCAGATTGCTAAAATGTTATCGATACCATATATA
66 CAAAACAGAATGCTAAAATGGTATCGATACCATATATA
* * * *
1950 ATATCGAGACTGAAACCCAAAATAATGAAGTAGTATCGATACTAATGAGGAAGTACCAATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTACTGAGGCAGTACCGATACTGT
* * *
2015 CAAAATATAATGCTAAAATGGTA-CTGATACCATATATG
66 CAAAACAGAATGCTAAAATGGTATC-GATACCATATATA
* * * *
2053 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGTTACTGCTGAGACATTACCGATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTACTGAGGCAGTACCGATACTGT
* *
2118 CAAAACAGAATGCTAAAATGGT-TCCGATATCATATATG
66 CAAAACAGAATGCTAAAATGGTAT-CGATACCATATATA
* * * * *
2156 ATATCGGTACTGAATCCCAAAATAATGAAGTAGTATCGATACTGCTGAGGAAGTACTGATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTACTGAGGCAGTACCGATACTGT
* *
2221 CAAAACAGAACGCTAAAATGGTAT-TATACCATATATA
66 CAAAACAGAATGCTAAAATGGTATCGATACCATATATA
* * * * *
2258 ATGTCGTTACAGAAACTCAAAATAATGAAGTAGTACCGATACTACTGAGGCAGTACCGATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTACTGAGGCAGTACCGATACTGT
2323 CAAAACA
66 CAAAACA
2330 ACGATCAAGC
Statistics
Matches: 328, Mismatches: 48, Indels: 9
0.85 0.12 0.02
Matches are distributed among these distances:
102 74 0.23
103 252 0.77
104 2 0.01
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.26
Consensus pattern (103 bp):
ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTACTGAGGCAGTACCGATACTGT
CAAAACAGAATGCTAAAATGGTATCGATACCATATATA
Found at i:3574 original size:17 final size:17
Alignment explanation
Indices: 3548--3582 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
3538 CAAGCCAACT
3548 CACGTCTGTCAGCCACC
1 CACGTCTGTCAGCCACC
*
3565 CACGTTTGTCAGCCACC
1 CACGTCTGTCAGCCACC
3582 C
1 C
3583 TCGAACAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.17, C:0.46, G:0.17, T:0.20
Consensus pattern (17 bp):
CACGTCTGTCAGCCACC
Found at i:11390 original size:27 final size:27
Alignment explanation
Indices: 11324--11391 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
11314 ACTTGTCAAA
* *
11324 TAGAAGAAGTGGCAAAGCAACAAGAAG
1 TAGATGAAGTGGGAAAGCAACAAGAAG
11351 TAGATGAAGTGGGAAAGCAACAAGAAG
1 TAGATGAAGTGGGAAAGCAACAAGAAG
11378 TAGATGAAGTGGGA
1 TAGATGAAGTGGGA
11392 CACATGACTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.47, C:0.07, G:0.34, T:0.12
Consensus pattern (27 bp):
TAGATGAAGTGGGAAAGCAACAAGAAG
Found at i:17925 original size:56 final size:56
Alignment explanation
Indices: 17843--18163 Score: 504
Period size: 56 Copynumber: 5.8 Consensus size: 56
17833 GAAGCAAAAG
*
17843 AAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCATTTGCAA
1 AAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGCAA
17899 AAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGCAA
1 AAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGCAA
*
17955 AAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGAAA
1 AAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGCAA
* *
18011 AAGATTATTCGAGTTTTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGTAA
1 AAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGCAA
* * ***
18067 AAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACACGATTGTTG
1 AAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGCAA
* *
18123 AAGATTGTTCGAG-TCTTATAC-TCTCTG-AAGAAATAGGGAGC
1 AAGATTATTCGAGTTC-TATACTTC-CTGAAAGAAAGAGGGAGC
18164 AGACACGATT
Statistics
Matches: 252, Mismatches: 11, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
55 17 0.07
56 235 0.93
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.26
Consensus pattern (56 bp):
AAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGCAA
Found at i:18235 original size:111 final size:111
Alignment explanation
Indices: 17842--18306 Score: 394
Period size: 112 Copynumber: 4.2 Consensus size: 111
17832 TGAAGCAAAA
* * * * ***
17842 GAAGATTATTCGAGT-TCTATACTTCCTGAAAGAAAGAGGGAGCGAAC-CCATTTGCAAAAGATT
1 GAAGATTGTTTGAGTCT-TATACTTCCTGAAAGAAAGAGGGAGCAAACACGA-TTGTTGAAGATT
* * * * **
17905 ATTCGAGT-TCTATACT-TCCTGAAAGAAAGAGGGAGC-GAACCCGTTTGCA
64 GTTCGAGTCT-TATACTCT-CTG-AAGAAATAGGGAGCAG-ACACGATTGTT
* * * * * * *** *
17954 AAAGATTATTCGAGT-TCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGAAAAAGATTA
1 GAAGATTGTTTGAGTCT-TATACTTCCTGAAAGAAAGAGGGAGCAAACACGATTGTTGAAGATTG
* * * * *
18018 TTCGAGTTTTATACT-TCCTGAAAGAAAGAGGGAGC-GAACCCGTTTGTA
65 TTCGAGTCTTATACTCT-CTG-AAGAAATAGGGAGCAG-ACACGATTGTT
* * * *
18066 AAAGATTATTCGAGT-TCTATACTTCCTGAAAGAAAGAGGGAGCGAACACGATTGTTGAAGATTG
1 GAAGATTGTTTGAGTCT-TATACTTCCTGAAAGAAAGAGGGAGCAAACACGATTGTTGAAGATTG
18130 TTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTT
65 TTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTT
* *
18177 GAAGATTGTTTGAGTCTTATAC-TCTCTG-AAGAAATAGGGAGCAAACATGATTGATTGAAGATT
1 GAAGATTGTTTGAGTCTTATACTTC-CTGAAAGAAAGAGGGAGCAAACACGATTG-TTGAAGATT
* * *
18240 GTTCGCGTCTTATACTCTCTGAAGAAATAGGGAGCAAACACAATTGTT
64 GTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTT
*
18288 GAAGATGGTTTGAGTCTTA
1 GAAGATTGTTTGAGTCTTA
18307 GGTGGTGTTT
Statistics
Matches: 320, Mismatches: 26, Indels: 15
0.89 0.07 0.04
Matches are distributed among these distances:
110 24 0.08
111 113 0.35
112 180 0.56
113 3 0.01
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.28
Consensus pattern (111 bp):
GAAGATTGTTTGAGTCTTATACTTCCTGAAAGAAAGAGGGAGCAAACACGATTGTTGAAGATTGT
TCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTT
Found at i:18261 original size:56 final size:55
Alignment explanation
Indices: 18011--18306 Score: 355
Period size: 56 Copynumber: 5.3 Consensus size: 55
18001 CCGTTTGAAA
* * * * * * **
18011 AAGATTATTCGAGTTTTATACT-TCCTGAAAGAAAGAGGGAGCGAACCCGTTTGTAA
1 AAGATTGTTCGAGTCTTATACTCT-CTG-AAGAAATAGGGAGCAAACACGATTGTTG
* * *
18067 AAGATTATTCGAGT-TCTATACT-TCCTGAAAGAAAGAGGGAGCGAACACGATTGTTG
1 AAGATTGTTCGAGTCT-TATACTCT-CTG-AAGAAATAGGGAGCAAACACGATTGTTG
*
18123 AAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAAACACGATTGTTG
* *
18178 AAGATTGTTTGAGTCTTATACTCTCTGAAGAAATAGGGAGCAAACATGATTGATTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAAACACGATTG-TTG
* *
18234 AAGATTGTTCGCGTCTTATACTCTCTGAAGAAATAGGGAGCAAACACAATTGTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAAACACGATTGTTG
* *
18289 AAGATGGTTTGAGTCTTA
1 AAGATTGTTCGAGTCTTA
18307 GGTGGTGTTT
Statistics
Matches: 218, Mismatches: 18, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
55 93 0.43
56 123 0.56
57 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.30
Consensus pattern (55 bp):
AAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAAACACGATTGTTG
Found at i:18527 original size:31 final size:31
Alignment explanation
Indices: 18491--18549 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
18481 AACTTAAAAG
* * *
18491 AGTTTTGCAATGCTGAGATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
18522 AGTTTTACAATACTGAAATTTAAATAAT
1 AGTTTTACAATACTGAAATTTAAATAAT
18550 CCATACAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.39, C:0.07, G:0.12, T:0.42
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:18628 original size:54 final size:54
Alignment explanation
Indices: 18564--19250 Score: 633
Period size: 54 Copynumber: 12.6 Consensus size: 54
18554 ACAACTACAA
* *
18564 TAATAAATTATTTAAAATAAATAAATCCATATTTTAAAATAAATCAATCTATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCAATAC
*** * *
18618 TAATAAATTATTTAAAATAAATCAATCCATACAACTACAAT-AATAAATCAAT-C
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAATCAATCAATAC
* ** * ** * *
18671 -CAT--A-T-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT-C
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAAT-CAATCAATAC
** ** *
18721 -AATCCA-TATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT-C
1 TAATAAATTA-TTTAAAATAAATCAATCCATA-TTTTAAA--A--T-AAATCAATCAATAC
* *
18779 T-ATACAATTA--CAATAATAAATCAATCCATATTTTAAAATAAATCAATCAATAT
1 TAATA-AATTATTTAA-AATAAATCAATCCATATTTTAAAATAAATCAATCAATAC
*
18832 TAATAAATTATTTAAAATAAATCAATCCTTATTTTAAAATAAATCAATTC-ATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAA-TCAATAC
18886 TAATAAATTATTTAAAATAAATCAATCCATATTTTTAAAA-AAATCAAT-ACATAC
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAATCAATCA-ATAC
* *
18940 TAATAAATTATTTAAAATAAAGCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCAATAC
*
18994 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCAATAC
*
19048 TAATAAATTATTTTAAAA-AAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTA-TTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCAATAC
** * ** * *
19102 TAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT-C
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAAT-CAATCAATAC
** *
19157 -AATCCA-TATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC
1 TAATAAATTA-TTTAAAATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCAATAC
19220 TAATAAATTATTTAAAATAAATCAATCCATA
1 TAATAAATTATTTAAAATAAATCAATCCATA
19251 CTAATAAATT
Statistics
Matches: 535, Mismatches: 55, Indels: 84
0.79 0.08 0.12
Matches are distributed among these distances:
48 27 0.05
49 2 0.00
50 11 0.02
52 15 0.03
53 26 0.05
54 330 0.62
55 35 0.07
56 6 0.01
57 7 0.01
58 30 0.06
59 3 0.01
60 5 0.01
62 7 0.01
63 9 0.02
64 20 0.04
65 2 0.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (54 bp):
TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCAATAC
Found at i:18705 original size:22 final size:23
Alignment explanation
Indices: 18630--18704 Score: 82
Period size: 22 Copynumber: 3.2 Consensus size: 23
18620 ATAAATTATT
18630 TAAAATAAATCAATCCATAC-AA
1 TAAAATAAATCAATCCATACTAA
**
18652 CTACAATAATAAATCAATCCATA-TTT
1 -T--AA-AATAAATCAATCCATACTAA
18678 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATACTAA
18701 TAAA
1 TAAA
18705 TTATTTAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
22 16 0.37
23 8 0.19
25 3 0.07
26 16 0.37
ACGTcount: A:0.55, C:0.17, G:0.00, T:0.28
Consensus pattern (23 bp):
TAAAATAAATCAATCCATACTAA
Found at i:18715 original size:32 final size:32
Alignment explanation
Indices: 18676--19390 Score: 575
Period size: 32 Copynumber: 25.7 Consensus size: 32
18666 CAATCCATAT
18676 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
18708 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
18730 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
18762 TTTAAAATAAATCAAT-C-TA-T-A-CAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
18789 --CAATAATAAATCAATCC--A-T-AT------
1 TTTAA-AATAAATCAATCCATACTAATAAATTA
* *
18810 TTTAAAATAAATCAATCAATATTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
18842 TTTAAAATAAATCAAT-C---CT--T--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
18864 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
18896 TTTAAAATAAATCAAT-C---C--AT--ATT-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
18919 TTTAAAA-AAATCAATACATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
18950 TTTAAAATAAAGCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
18972 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
19004 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
19026 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
19058 TTTTAAAA-AAATCAAT-C---C--AT--A-T-
1 -TTTAAAATAAATCAATCCATACTAATAAATTA
19080 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
19112 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
19144 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
19166 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
19198 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
19230 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
19262 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
19284 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
19316 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
19338 TTTAAAATAAATCAATCCATACAAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
19370 TTTAAAATCAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
19391 TTTTATAATA
Statistics
Matches: 567, Mismatches: 9, Indels: 214
0.72 0.01 0.27
Matches are distributed among these distances:
21 7 0.01
22 139 0.25
23 26 0.05
24 12 0.02
25 3 0.01
26 43 0.08
27 6 0.01
28 27 0.05
29 1 0.00
30 13 0.02
31 24 0.04
32 259 0.46
33 7 0.01
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (32 bp):
TTTAAAATAAATCAATCCATACTAATAAATTA
Found at i:18734 original size:22 final size:22
Alignment explanation
Indices: 18708--18750 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
18698 TAATAAATTA
18708 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
18730 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
18751 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:18759 original size:22 final size:22
Alignment explanation
Indices: 18710--18758 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
18700 ATAAATTATT
**
18710 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
18732 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
18755 TAAA
1 TAAA
18759 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:18839 original size:22 final size:22
Alignment explanation
Indices: 18760--18838 Score: 70
Period size: 22 Copynumber: 3.4 Consensus size: 22
18750 ACTAATAAAT
18760 TATT-TAAAATAAATCAATCTATA
1 TATTATAAAATAAATCAATC-A-A
* * *
18783 CAATTACAATAATAAATCAATCCA
1 -TATTATAA-AATAAATCAATCAA
*
18807 TATTTTAAAATAAATCAATCAA
1 TATTATAAAATAAATCAATCAA
18829 TATTAATAAA
1 TATT-ATAAA
18839 TTATTTAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 7
0.75 0.14 0.12
Matches are distributed among these distances:
22 17 0.39
23 9 0.20
24 4 0.09
25 2 0.05
26 12 0.27
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.34
Consensus pattern (22 bp):
TATTATAAAATAAATCAATCAA
Found at i:18932 original size:22 final size:23
Alignment explanation
Indices: 18896--18938 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
18886 TAATAAATTA
*
18896 TTTAAAATAAATCAATCCATATT
1 TTTAAAATAAATCAATACATATT
18919 TTTAAAA-AAATCAATACATA
1 TTTAAAATAAATCAATACATA
18939 CTAATAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (23 bp):
TTTAAAATAAATCAATACATATT
Found at i:18946 original size:22 final size:23
Alignment explanation
Indices: 18898--18946 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 23
18888 ATAAATTATT
* * **
18898 TAAAATAAATCAATCCATATTTT
1 TAAAATAAATCAATACATACTAA
18921 TAAAA-AAATCAATACATACTAA
1 TAAAATAAATCAATACATACTAA
18943 TAAA
1 TAAA
18947 TTATTTAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (23 bp):
TAAAATAAATCAATACATACTAA
Found at i:18954 original size:86 final size:86
Alignment explanation
Indices: 18864--19390 Score: 631
Period size: 86 Copynumber: 6.2 Consensus size: 86
18854 CAATCCTTAT
*
18864 TTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTTAAAA-AA
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAA
18928 ATCAATACATACTAATAAATTA
65 ATCAATACATACTAATAAATTA
* ** * *
18950 TTTAAAATAAAGCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCCATACTAATAAATTAT
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAA
* * * **
19005 TTAAAATAAAT-C-AATCCA-TA
65 AT-CAATACATACTAATAAATTA
19025 TTTTAAAATAAATCAATCCATACTAATAAATTATTTTAAAA-AAATCAATCCATATTTTAAAATA
1 -TTTAAAATAAATCAATCCATACTAATAAATTA-TTTAAAATAAATCAATCCATATTTTAAAATA
*
19089 AATCAATCCATACTAATAAATTA
64 AATCAATACATACTAATAAATTA
19112 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAA
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAA
*
19177 TCAATCCATACTAATAAATTA
66 TCAATACATACTAATAAATTA
** * *
19198 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTAT
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAA
* * * **
19263 TTAAAATAAAT-C-AATCCA-TA
65 AT-CAATACATACTAATAAATTA
19283 TTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAA
1 -TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAA
* *
19348 ATCAATCCATACAAATAAATTA
65 ATCAATACATACTAATAAATTA
*
19370 TTTAAAATCAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
19391 TTTTATAATA
Statistics
Matches: 374, Mismatches: 43, Indels: 48
0.80 0.09 0.10
Matches are distributed among these distances:
75 2 0.01
76 45 0.12
77 5 0.01
78 7 0.02
80 3 0.01
82 3 0.01
84 11 0.03
85 29 0.08
86 244 0.65
87 20 0.05
88 5 0.01
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (86 bp):
TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAA
TCAATACATACTAATAAATTA
Found at i:18976 original size:22 final size:22
Alignment explanation
Indices: 18950--18992 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
18940 TAATAAATTA
18950 TTTAAAATAAAGCAATCCATAT
1 TTTAAAATAAAGCAATCCATAT
*
18972 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAAGCAATCCATA
18993 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.51, C:0.14, G:0.02, T:0.33
Consensus pattern (22 bp):
TTTAAAATAAAGCAATCCATAT
Found at i:19001 original size:22 final size:22
Alignment explanation
Indices: 18952--19000 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
18942 ATAAATTATT
**
18952 TAAAATAAAGCAATCCATATTT
1 TAAAATAAAGCAATCCATATAA
*
18974 TAAAATAAATCAATCCATACTAA
1 TAAAATAAAGCAATCCATA-TAA
18997 TAAA
1 TAAA
19001 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.14, G:0.02, T:0.29
Consensus pattern (22 bp):
TAAAATAAAGCAATCCATATAA
Found at i:19030 original size:22 final size:22
Alignment explanation
Indices: 19004--19046 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
18994 TAATAAATTA
19004 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
19026 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
19047 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:19055 original size:22 final size:22
Alignment explanation
Indices: 19006--19054 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
18996 ATAAATTATT
**
19006 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
19028 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
19051 TAAA
1 TAAA
19055 TTATTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:19082 original size:21 final size:22
Alignment explanation
Indices: 19056--19100 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
19046 ACTAATAAAT
19056 TATTTTAAAA-AAATCAATCCA
1 TATTTTAAAATAAATCAATCCA
19077 TATTTTAAAATAAATCAATCCA
1 TATTTTAAAATAAATCAATCCA
19099 TA
1 TA
19101 CTAATAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (22 bp):
TATTTTAAAATAAATCAATCCA
Found at i:19109 original size:22 final size:21
Alignment explanation
Indices: 19061--19109 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
19051 TAAATTATTT
* **
19061 TAAAAAAATCAATCCATATTT
1 TAAATAAATCAATCCATATAA
19082 TAAAATAAATCAATCCATACTAA
1 T-AAATAAATCAATCCATA-TAA
19105 TAAAT
1 TAAAT
19110 TATTTAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 1 0.04
22 20 0.87
23 2 0.09
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (21 bp):
TAAATAAATCAATCCATATAA
Found at i:19170 original size:22 final size:22
Alignment explanation
Indices: 19144--19186 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
19134 TAATAAATTA
19144 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
19166 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
19187 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:19195 original size:22 final size:22
Alignment explanation
Indices: 19146--19194 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
19136 ATAAATTATT
**
19146 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
19168 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
19191 TAAA
1 TAAA
19195 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:19288 original size:22 final size:22
Alignment explanation
Indices: 19262--19304 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
19252 TAATAAATTA
19262 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
19284 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
19305 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:19290 original size:54 final size:54
Alignment explanation
Indices: 18659--19401 Score: 475
Period size: 54 Copynumber: 13.5 Consensus size: 54
18649 CAACTACAAT
18659 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
18713 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
* ** ** * ** *
18767 AATAAATCAATCTATACAATTACAATAATAAATCAATCCATA-TTTTAAAATAAAT-C
1 AATAAATCAATCCAT---ATTTTAA-AATAAATCAATCCATACTAATAAATTATTTAA
* ** ** * * *
18823 AATCAATATTAATAAAT-TATTTAAAATAAATCAATCCTTATTTTAAAATAAATCAATTCAT
1 AAT-AA-ATCAATCCATAT-TTTAAAATAAATCAATCC--ATACT--AATAAAT-TATTTAA
* * * ** ** * *
18884 ACT-AATAAAT---TA-TTTAAAATAAATCAATCCATATTTTTAAAAAAATCAA
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
* * ** * ** *
18933 TACATACTAATAAAT---TA-TTTAAAATAAAGCAATCCATA-TTTTAAAATAAAT-C
1 -A-ATA--AATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
** ** ** * ** *
18985 AATCCATACTAATAAAT-TATTTAAAATAAATCAATCCATA-TTTTAAAATAAAT-C
1 AATAAAT-C-AATCCATAT-TTTAAAATAAATCAATCCATACTAATAAATTATTTAA
** ** ** * ** *
19039 AATCCATACTAATAAATTATTTTAAAA-AAATCAATCCATA-TTTTAAAATAAAT-C
1 AATAAAT-C-AATCCA-TATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
** **
19093 AATCCATACTAATAAAT-TATTTAAAATAAATCAATCCATACTAATAAATTATTTAA
1 AATAAAT-C-AATCCATAT-TTTAAAATAAATCAATCCATACTAATAAATTATTTAA
19149 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
19203 AATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAA
1 AATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCCATACTAATAAATTATTTAA
19267 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
*
19321 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACAAATAAATTATTTAA
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
* *
19375 AATCAATCAATCCATATTTTATAATAA
1 AATAAATCAATCCATATTTTAAAATAA
19402 TTTATTTTAA
Statistics
Matches: 591, Mismatches: 54, Indels: 88
0.81 0.07 0.12
Matches are distributed among these distances:
48 2 0.00
49 5 0.01
50 10 0.02
51 2 0.00
52 5 0.01
53 19 0.03
54 403 0.68
55 24 0.04
56 12 0.02
57 16 0.03
58 31 0.05
59 5 0.01
60 4 0.01
61 2 0.00
62 1 0.00
63 2 0.00
64 48 0.08
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (54 bp):
AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
Found at i:19313 original size:22 final size:22
Alignment explanation
Indices: 19264--19312 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
19254 ATAAATTATT
**
19264 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
19286 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
19309 TAAA
1 TAAA
19313 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:19342 original size:22 final size:22
Alignment explanation
Indices: 19316--19358 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
19306 TAATAAATTA
19316 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
19338 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
19359 CAAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:19367 original size:22 final size:22
Alignment explanation
Indices: 19318--19366 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
19308 ATAAATTATT
***
19318 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATAAAA
19340 TAAAATAAATCAATCCATACAAA
1 TAAAATAAATCAATCCATA-AAA
19363 TAAA
1 TAAA
19367 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (22 bp):
TAAAATAAATCAATCCATAAAA
Found at i:19405 original size:86 final size:86
Alignment explanation
Indices: 18676--19401 Score: 422
Period size: 86 Copynumber: 8.7 Consensus size: 86
18666 CAATCCATAT
18676 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAA
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAA
*
18741 TCAATCCATACTAATAAATTA
66 TCAATCCATACAAATAAATTA
* *
18762 TTTAAAATAAATCAAT-C-TA-T-A-CAATTA--CAATAATAAATCAATCCATATTTTAAAATAA
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAA-AATAAATCAATCCATATTTTAAAATAA
* **
18820 ATCAATCAATATTAATAAATTA
65 ATCAATCCATACAAATAAATTA
** * * * * *
18842 TTTAAAATAAATCAATCCTTATTTTAAAATAAATCAATTCATACT-AATAAAT---TA-TTTAAA
1 TTTAAAATAAATCAATCC--ATACT--AATAAAT-TATTTAAAATAAATCAATCCATATTTTAAA
18902 ATAAATCAAT-C---C--AT--ATT-
61 ATAAATCAATCCATACAAATAAATTA
* *
18919 TTTAAAA-AAATCAATACATACTAATAAATTATTTAAAATAAAGCAATCCATATTTTAAAATAAA
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAA
*
18983 TCAATCCATACTAATAAATTA
66 TCAATCCATACAAATAAATTA
** * ** * ** **
19004 TTTAAAATAAATCAATCCATA-TTTTAAAATAAAT-CAATCCATACTAATAAATTATTTTAAAA-
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT-C-AATCCA-TATTTTAAAAT
19066 AAATCAAT-C---C--AT--A-T-
63 AAATCAATCCATACAAATAAATTA
*
19080 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATA--CT--AATAAA
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAA
* * ** * * *
19141 TTATTTAAAATAAATCAATCCATA
66 TCAATCCATACAAATAAAT---TA
19165 TTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTA
1 -TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT-C---C--AT--A-T-
*
19230 TTTAAAATAAATCAATCCATACTAATAAATTA
55 TTTAAAATAAATCAATCCATACAAATAAATTA
** * *
19262 TTTAAAATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCCATACTAATAAATTAT
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAA
* * ** **
19317 TTAAAATAAAT-C-AATCCA-TA
65 AT-CAATCCATACAAATAAATTA
* * *
19337 TTTTAAAATAAATCAATCCATACAAATAAATTATTTAAAATCAATCAATCCATATTTTATAATAA
1 -TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAA
19402 TTTATTTTAA
Statistics
Matches: 492, Mismatches: 74, Indels: 149
0.69 0.10 0.21
Matches are distributed among these distances:
71 8 0.02
72 18 0.04
73 1 0.00
74 3 0.01
75 6 0.01
76 70 0.14
77 27 0.05
78 18 0.04
79 2 0.00
80 72 0.15
81 6 0.01
82 7 0.01
83 1 0.00
84 12 0.02
85 27 0.05
86 140 0.28
87 14 0.03
88 2 0.00
89 3 0.01
90 10 0.02
91 2 0.00
92 5 0.01
94 1 0.00
95 1 0.00
96 16 0.03
97 2 0.00
98 1 0.00
100 17 0.03
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.35
Consensus pattern (86 bp):
TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAA
TCAATCCATACAAATAAATTA
Found at i:19408 original size:36 final size:33
Alignment explanation
Indices: 19163--19448 Score: 227
Period size: 32 Copynumber: 9.5 Consensus size: 33
19153 AATCAATCCA
*
19163 TATTTTAAAATAAATCAATCCATACTAATAAAT
1 TATTTTAAAATAAATCAATCCATACAAATAAAT
*
19196 TA-TTTAAAATAAATCAATCCATACTAATAAAT
1 TATTTTAAAATAAATCAATCCATACAAATAAAT
*
19228 TA-TTTAAAATAAATCAATCCATACTAATAAAT
1 TATTTTAAAATAAATCAATCCATACAAATAAAT
19260 TA-TTTAAAATAAATCAAT-C---C------A-
1 TATTTTAAAATAAATCAATCCATACAAATAAAT
*
19281 TATTTTAAAATAAATCAATCCATACTAATAAAT
1 TATTTTAAAATAAATCAATCCATACAAATAAAT
19314 TA-TTTAAAATAAATCAAT-C---C------A-
1 TATTTTAAAATAAATCAATCCATACAAATAAAT
19335 TATTTTAAAATAAATCAATCCATACAAATAAAT
1 TATTTTAAAATAAATCAATCCATACAAATAAAT
* * *
19368 TA-TTTAAAATCAATCAATCCATATTTTATAATAATT
1 TATTTTAAAATAAATCAATCCATA---CA-AATAAAT
* ** *
19404 TATTTTAAAATAAAT-TAT-TTTA-TAATAAAT
1 TATTTTAAAATAAATCAATCCATACAAATAAAT
19434 TATTTTAAAATAAAT
1 TATTTTAAAATAAAT
19449 TATTTTATAA
Statistics
Matches: 215, Mismatches: 9, Indels: 61
0.75 0.03 0.21
Matches are distributed among these distances:
21 4 0.02
22 34 0.16
23 2 0.01
26 2 0.01
28 2 0.01
30 21 0.10
31 2 0.01
32 118 0.55
33 6 0.03
35 3 0.01
36 10 0.05
37 11 0.05
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.38
Consensus pattern (33 bp):
TATTTTAAAATAAATCAATCCATACAAATAAAT
Found at i:19409 original size:15 final size:15
Alignment explanation
Indices: 19389--19478 Score: 135
Period size: 15 Copynumber: 6.0 Consensus size: 15
19379 AATCAATCCA
*
19389 TATTTTATAATAATT
1 TATTTTATAATAAAT
*
19404 TATTTTAAAATAAAT
1 TATTTTATAATAAAT
19419 TATTTTATAATAAAT
1 TATTTTATAATAAAT
*
19434 TATTTTAAAATAAAT
1 TATTTTATAATAAAT
19449 TATTTTATAATAAAT
1 TATTTTATAATAAAT
* *
19464 TATTTAAAAATAAAT
1 TATTTTATAATAAAT
19479 AACCTTATTA
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 68 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTTTATAATAAAT
Found at i:19423 original size:30 final size:30
Alignment explanation
Indices: 19389--19503 Score: 162
Period size: 30 Copynumber: 3.9 Consensus size: 30
19379 AATCAATCCA
*
19389 TATTTTATAATAATTTATTTTAAAATAAAT
1 TATTTTATAATAAATTATTTTAAAATAAAT
19419 TATTTTATAATAAATTATTTTAAAATAAAT
1 TATTTTATAATAAATTATTTTAAAATAAAT
*
19449 TATTTTATAATAAATTATTTAAAAATAAAT
1 TATTTTATAATAAATTATTTTAAAATAAAT
* ** *
19479 AACCTTAT--TAAATTATTTAAAAATA
1 TATTTTATAATAAATTATTTTAAAATA
19504 TTTTAATAAA
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
28 17 0.21
30 63 0.79
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (30 bp):
TATTTTATAATAAATTATTTTAAAATAAAT
Found at i:19921 original size:110 final size:110
Alignment explanation
Indices: 19723--20023 Score: 419
Period size: 110 Copynumber: 2.7 Consensus size: 110
19713 CAAACTAAGC
* * * * *
19723 CTTATACTCTATGAAGAAATAGGAAGCATACACGATTGTTGAAAATGGTTCGAGTCTTATACTCT
1 CTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTGAAGATTGTTCGAGTCTTATACTCT
* * *
19788 CTGAAGAAATAGGGAGCATACACGATTGTTGAAGATGGTTCGAGTA
66 CTGAAGGAATAGGGAGCAGACACGATTGTTAAAGATGGTTCGAG-A
* *
19834 -TTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTGAAGATTATTCGAGTCTTTTACTCT
1 CTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTGAAGATTGTTCGAGTCTTATACTCT
19898 CTGAAGGAATAGGGAGCAGACACGATTGTTAAAGATGGTTCGAGA
66 CTGAAGGAATAGGGAGCAGACACGATTGTTAAAGATGGTTCGAGA
* * * *
19943 CTTATACTCTCTGAAGGAATAGTGAGCAGACACGATTGTTGAAGATTGTTTGAGT-TTCTACTC-
1 CTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTGAAGATTGTTCGAGTCTTATACTCT
* *
20006 CTTGAAAGAATGGGGAGC
66 C-TGAAGGAATAGGGAGC
20024 GAAATCATTT
Statistics
Matches: 171, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
108 1 0.01
109 22 0.13
110 148 0.87
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (110 bp):
CTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTGAAGATTGTTCGAGTCTTATACTCT
CTGAAGGAATAGGGAGCAGACACGATTGTTAAAGATGGTTCGAGA
Found at i:19988 original size:55 final size:55
Alignment explanation
Indices: 19723--19988 Score: 390
Period size: 55 Copynumber: 4.8 Consensus size: 55
19713 CAAACTAAGC
* * * * *
19723 CTTATACTCTATGAAGAAATAGGAAGCATACACGATTGTTGAAAATGGTTCGAGT
1 CTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTGAAGATGGTTCGAGA
*
19778 CTTATACTCTCTGAAGAAATAGGGAGCATACACGATTGTTGAAGATGGTTCGAGTA
1 CTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTGAAGATGGTTCGAG-A
** *
19834 -TTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTGAAGATTATTCGAGT
1 CTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTGAAGATGGTTCGAGA
* * *
19888 CTTTTACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTAAAGATGGTTCGAGA
1 CTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTGAAGATGGTTCGAGA
* *
19943 CTTATACTCTCTGAAGGAATAGTGAGCAGACACGATTGTTGAAGAT
1 CTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTGAAGAT
19989 TGTTTGAGTT
Statistics
Matches: 192, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
55 192 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (55 bp):
CTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTGAAGATGGTTCGAGA
Found at i:23964 original size:17 final size:17
Alignment explanation
Indices: 23938--23971 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
23928 CATGATGATA
23938 AAAGAAGCAAC-AAAAC
1 AAAGAAGCAACTAAAAC
23954 AAAGAAAGCAACTAAAAC
1 AAAG-AAGCAACTAAAAC
23972 TGAACGAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 7 0.44
18 5 0.31
ACGTcount: A:0.68, C:0.18, G:0.12, T:0.03
Consensus pattern (17 bp):
AAAGAAGCAACTAAAAC
Found at i:24796 original size:20 final size:20
Alignment explanation
Indices: 24773--24817 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
24763 TAACAGTACC
*
24773 GATACTGTTAAATCAATATA
1 GATACTATTAAATCAATATA
* * *
24793 GATATTATTAAATCAGTATC
1 GATACTATTAAATCAATATA
24813 GATAC
1 GATAC
24818 ATATATCGAT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (20 bp):
GATACTATTAAATCAATATA
Found at i:25051 original size:53 final size:53
Alignment explanation
Indices: 24893--25052 Score: 127
Period size: 53 Copynumber: 3.1 Consensus size: 53
24883 GTCAAATCAG
* *
24893 AATGCTAAAATGTTATCGATACCATATATGATATCGATACTGAAACCCAAAAT
1 AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAACCCAAAAT
* * * * * * * * * *
24946 AAAG---AAGTAGTACCGATACTGATGAGA-AAGTACCAATACTGTCAA---AATAT
1 AATGCTAAAATGGTACCGATAC-CAT-ATATGA-TATCGATACTG-AAACCCAAAAT
24996 AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAACCCAAAAT
1 AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAACCCAAAAT
25049 AATG
1 AATG
25053 AAACTGCTGA
Statistics
Matches: 74, Mismatches: 22, Indels: 22
0.63 0.19 0.19
Matches are distributed among these distances:
50 20 0.27
51 14 0.19
52 14 0.19
53 26 0.35
ACGTcount: A:0.44, C:0.16, G:0.14, T:0.25
Consensus pattern (53 bp):
AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAACCCAAAAT
Found at i:25195 original size:195 final size:204
Alignment explanation
Indices: 24820--25365 Score: 648
Period size: 195 Copynumber: 2.7 Consensus size: 204
24810 ATCGATACAT
* * * * * *
24820 ATATCGATACTGAAACCCAAAAAAATAAAGCAGTGTCGACAATGCTGAGGCAGTACCGATACTGT
1 ATATCGATACTGAAACCC-AAATAATGAAGTAGT-AC-ATACTGCTGAGGCAGTACCGATACTGT
* *
24885 CAAATCAGAATGCTAAAAT-GTTATCGATACCATATATGATATCGATACTGAAACCCAAAATAA-
63 CAAAACAGAATGCTAAAATGGTTCT-GATACCATATATGATATCGATACTGAAACCCAAAATAAT
* * * *
24948 AGAAGTAGTACCGATACTGATGAGAAAGTACCAATACTGTCAAAATATAATGCTAAAATGGTACC
127 AGAAGTAGTACCGATACAGATGAGAAAGTAACAATACTGTCAAAACATAATGCTAAAATAGTACC
25013 GATACCATATATG
192 GATACCATATATG
*
25026 ATATCGATACTGAAACCC-AA-AAT-AA-T-G-A-A-ACTGCTGAGGCAGTACCGATACTATCAA
1 ATATCGATACTGAAACCCAAATAATGAAGTAGTACATACTGCTGAGGCAGTACCGATACTGTCAA
*
25083 AACAGAATGCTAAAATGGTTCTGATATCATATATGATATCGATACTGAAACCCAAAATAATA-AA
66 AACAGAATGCTAAAATGGTTCTGATACCATATATGATATCGATACTGAAACCCAAAATAATAGAA
** * * ** ** *
25147 GTAGTATTGTTACAGCTGAGGCAGTAATGATACTGTCAAAACATAATGCTAAAATAGTTCCGATA
131 GTAGTACCGATACAGATGAGAAAGTAACAATACTGTCAAAACATAATGCTAAAATAGTACCGATA
*
25212 TCATATATG
196 CCATATATG
* * *
25221 ATATCGGTACTGAATCCCAAAATAATGAAGTAGTATCGATACTGCTGAGGAAGTACCGATACTGT
1 ATATCGATACTGAAACCC-AAATAATGAAGTAGTA-C-ATACTGCTGAGGCAGTACCGATACTGT
* ** *
25286 CAAAACAGAATGCTAAAATGGTACTGATACCATATATGACGTCGATACTAAAACCCAAAATAAT-
63 CAAAACAGAATGCTAAAATGGTTCTGATACCATATATGATATCGATACTGAAACCCAAAATAATA
* *
25350 GATGTAGTCCCGATAC
128 GAAGTAGTACCGATAC
25366 TACTAAGGCA
Statistics
Matches: 291, Mismatches: 35, Indels: 28
0.82 0.10 0.08
Matches are distributed among these distances:
195 156 0.54
196 6 0.02
197 2 0.01
198 3 0.01
199 2 0.01
200 2 0.01
201 1 0.00
202 3 0.01
203 3 0.01
204 2 0.01
205 1 0.00
206 110 0.38
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.25
Consensus pattern (204 bp):
ATATCGATACTGAAACCCAAATAATGAAGTAGTACATACTGCTGAGGCAGTACCGATACTGTCAA
AACAGAATGCTAAAATGGTTCTGATACCATATATGATATCGATACTGAAACCCAAAATAATAGAA
GTAGTACCGATACAGATGAGAAAGTAACAATACTGTCAAAACATAATGCTAAAATAGTACCGATA
CCATATATG
Found at i:25349 original size:103 final size:103
Alignment explanation
Indices: 24820--25395 Score: 672
Period size: 103 Copynumber: 5.7 Consensus size: 103
24810 ATCGATACAT
* * * * * *
24820 ATATCGATACTGAAACCCAAAAAAATAAAGCAGTGTCGACAATGCTGAGGCAGTACCGATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
* * *
24885 CAAATCAGAATGCTAAAAT-GTTATCGATACCATATATG
66 CAAAACAGAATGCTAAAATGGTTCT-GATATCATATATG
* * * ** *
24923 ATATCGATACTGAAACCCAAAATAAAGAAGTAGTACCGATACTGATGAGAAAGTACCAATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
* * * * *
24988 CAAAATATAATGCTAAAATGGTACCGATACCATATATG
66 CAAAACAGAATGCTAAAATGGTTCTGATATCATATATG
*
25026 ATATCGATACTGAAACCC--AA-AAT-AA-T-G-A---A-ACTGCTGAGGCAGTACCGATACTAT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
25080 CAAAACAGAATGCTAAAATGGTTCTGATATCATATATG
66 CAAAACAGAATGCTAAAATGGTTCTGATATCATATATG
* * * * **
25118 ATATCGATACTGAAACCCAAAATAATAAAGTAGTATTGTTACAGCTGAGGCAGTAATGATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
* * *
25183 CAAAACATAATGCTAAAATAGTTCCGATATCATATATG
66 CAAAACAGAATGCTAAAATGGTTCTGATATCATATATG
* * *
25221 ATATCGGTACTGAATCCCAAAATAATGAAGTAGTATCGATACTGCTGAGGAAGTACCGATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
* *
25286 CAAAACAGAATGCTAAAATGGTACTGATACCATATATG
66 CAAAACAGAATGCTAAAATGGTTCTGATATCATATATG
** * * ** * *
25324 ACGTCGATACTAAAACCCAAAATAATGATGTAGTCCCGATACTACTAAGGCAGTACCGATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
25389 CAAAACA
66 CAAAACA
25396 ACAGACAAAT
Statistics
Matches: 399, Mismatches: 62, Indels: 24
0.82 0.13 0.05
Matches are distributed among these distances:
92 71 0.18
93 1 0.00
94 2 0.01
95 3 0.01
96 3 0.01
97 2 0.01
98 2 0.01
99 3 0.01
100 2 0.01
101 2 0.01
103 306 0.77
104 2 0.01
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.24
Consensus pattern (103 bp):
ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
CAAAACAGAATGCTAAAATGGTTCTGATATCATATATG
Found at i:27892 original size:20 final size:20
Alignment explanation
Indices: 27869--27913 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
27859 TAACAGTACC
*
27869 GATACTGTTAAATCAATATA
1 GATACTATTAAATCAATATA
* * *
27889 GATATTATTAAATCAGTATC
1 GATACTATTAAATCAATATA
27909 GATAC
1 GATAC
27914 ATATATCGAT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (20 bp):
GATACTATTAAATCAATATA
Found at i:28143 original size:53 final size:53
Alignment explanation
Indices: 27985--28144 Score: 129
Period size: 53 Copynumber: 3.1 Consensus size: 53
27975 GTCAAATCAG
* * *
27985 AATGCTAAAATGTTATCGATACCATATATGATATCGATACTGA-AACCCAAAAT
1 AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGATAA-ACAAAAT
* * * * * * *
28038 AATG---AAGTAGTACCGATA-C-TGATGAGGAAGTACCAATACTG-TCAA-AATAT
1 AATGCTAAAATGGTACCGATACCAT-AT-ATG-A-TATCGATACTGATAAACAAAAT
28088 AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGATAAACAAAAT
1 AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGATAAACAAAAT
28141 AATG
1 AATG
28145 AAACTGCTGA
Statistics
Matches: 78, Mismatches: 17, Indels: 24
0.66 0.14 0.20
Matches are distributed among these distances:
48 1 0.01
49 3 0.04
50 20 0.26
51 10 0.13
52 14 0.18
53 26 0.33
54 3 0.04
55 1 0.01
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (53 bp):
AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGATAAACAAAAT
Found at i:28217 original size:92 final size:93
Alignment explanation
Indices: 27954--28416 Score: 385
Period size: 103 Copynumber: 4.7 Consensus size: 93
27944 GTGTCGACAA
* * * *
27954 TGCTGAGGCAGTACCGATACTGTCAAATCAGAATGCTAAAATGTTATCGATACCATATATGATAT
1 TGCTGAGGAAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTACCGATACCATATATGATAT
*
28019 CGATACTGA-AACCCAAAATAATGAAGTAGTACCGATAC
66 CGATACTGATAA---ACAA-AAT-AA-TAG-A---A-AC
* * * *
28057 TGATGAGGAAGTACCAATACTGTCAAAATATAATGCTAAAATGGTACCGATACCATATATGATAT
1 TGCTGAGGAAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTACCGATACCATATATGATAT
28122 CGATACTGATAAACAAAATAAT-GAAAC
66 CGATACTGATAAACAAAATAATAGAAAC
* * * *
28149 TGCTGAGGCAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTTCTGATATCATATATGATAT
1 TGCTGAGGAAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTACCGATACCATATATGATAT
*
28214 CGATACTGA-AACCCAAAATAATAAAGTAGTATTGTTAC
66 CGATACTGATAA-ACAAAATAAT--AG-A--A-----AC
** ** * * *
28252 TGCTGAGGCGGTAATGATACTGTCAAAACATAATGCTAAAATGGTTCCGATATCATATATGATAT
1 TGCTGAGGAAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTACCGATACCATATATGATAT
* *
28317 CGGTACTGAATCCCAAA-ATAATGAAGTAGTATCGATAC
66 CGATACTG-AT---AAACAAAAT-AA-TAG-A---A-AC
*
28355 TGCTGAGGAAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTACTGATACCATATATGA
1 TGCTGAGGAAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTACCGATACCATATATGA
28417 CGTGGATACT
Statistics
Matches: 303, Mismatches: 36, Indels: 42
0.80 0.09 0.11
Matches are distributed among these distances:
91 2 0.01
92 77 0.25
93 1 0.00
95 1 0.00
96 2 0.01
97 1 0.00
98 2 0.01
99 2 0.01
100 3 0.01
101 3 0.01
103 192 0.63
104 3 0.01
106 8 0.03
107 3 0.01
108 3 0.01
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (93 bp):
TGCTGAGGAAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTACCGATACCATATATGATAT
CGATACTGATAAACAAAATAATAGAAAC
Found at i:28287 original size:195 final size:201
Alignment explanation
Indices: 27954--28487 Score: 686
Period size: 195 Copynumber: 2.7 Consensus size: 201
27944 GTGTCGACAA
* *
27954 TGCTGAGGCAGTACCGATACTGTCAAATCAGAATGCTAAAAT-GTTATCGATACCATATATGATA
1 TGCTGAGGCAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTTCT-GATACCATATATGATA
*
28018 TCGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGATGAGGAAGTACCAATACTGTCAA
65 TCGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGATGAGGAAGTAACAATACTGTCAA
*
28083 AATATAATGCTAAAATGGTACCGATACCATATATGATATCGATACTG-AT-AAACAA-AA-TA-A
130 AACATAATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAATCAAACAAGAAGTAGA
28143 T-GAAAC
195 TCGAAAC
*
28149 TGCTGAGGCAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTTCTGATATCATATATGATAT
1 TGCTGAGGCAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTTCTGATACCATATATGATAT
* ** * * ** **
28214 CGATACTGAAACCCAAAATAATAAAGTAGTATTGTTACTGCTGAGGCGGTAATGATACTGTCAAA
66 CGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGATGAGGAAGTAACAATACTGTCAAA
* * * *
28279 ACATAATGCTAAAATGGTTCCGATATCATATATGATATCGGTACTGAATCCCAAAATAATGAAGT
131 ACATAATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAT--C-AAACAA-GAAGT
*
28344 AGTATCGATAC
192 AG-ATCGAAAC
* * **
28355 TGCTGAGGAAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTACTGATACCATATATGACGT
1 TGCTGAGGCAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTTCTGATACCATATATGATAT
* * * * * * * *
28420 GGATACTAAAACCCAAAATAATGATGTAGTACCGATACTAATGAGGCAGTACCGATACTGCCAAA
66 CGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGATGAGGAAGTAACAATACTGTCAAA
28485 ACA
131 ACA
28488 ACGGTCAAGT
Statistics
Matches: 290, Mismatches: 37, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
195 154 0.53
196 6 0.02
200 5 0.02
202 2 0.01
203 2 0.01
205 2 0.01
206 119 0.41
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.25
Consensus pattern (201 bp):
TGCTGAGGCAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTTCTGATACCATATATGATAT
CGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGATGAGGAAGTAACAATACTGTCAAA
ACATAATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAATCAAACAAGAAGTAGAT
CGAAAC
Found at i:28326 original size:103 final size:103
Alignment explanation
Indices: 28147--28487 Score: 477
Period size: 103 Copynumber: 3.3 Consensus size: 103
28137 AAATAATGAA
28147 ACTGCTGAGGCAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTTCTGATATCATATATGAT
1 ACTGCTGAGGCAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTTCTGATATCATATATGAT
* * * *
28212 ATCGATACTGAAACCCAAAATAATAAAGTAGTATTGTT
66 ATCGGTACTGAAACCCAAAATAATGAAGTAGTATCGAT
* ** * *
28250 ACTGCTGAGGCGGTAATGATACTGTCAAAACATAATGCTAAAATGGTTCCGATATCATATATGAT
1 ACTGCTGAGGCAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTTCTGATATCATATATGAT
*
28315 ATCGGTACTGAATCCCAAAATAATGAAGTAGTATCGAT
66 ATCGGTACTGAAACCCAAAATAATGAAGTAGTATCGAT
* * * *
28353 ACTGCTGAGGAAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTACTGATACCATATATGAC
1 ACTGCTGAGGCAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTTCTGATATCATATATGAT
* * * *
28418 GT-GGATACTAAAACCCAAAATAATGATGTAGTACCGAT
66 ATCGG-TACTGAAACCCAAAATAATGAAGTAGTATCGAT
** *
28456 ACTAATGAGGCAGTACCGATACTGCCAAAACA
1 ACTGCTGAGGCAGTACCGATACTGTCAAAACA
28488 ACGGTCAAGT
Statistics
Matches: 209, Mismatches: 28, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
102 2 0.01
103 207 0.99
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.26
Consensus pattern (103 bp):
ACTGCTGAGGCAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTTCTGATATCATATATGAT
ATCGGTACTGAAACCCAAAATAATGAAGTAGTATCGAT
Found at i:30997 original size:20 final size:20
Alignment explanation
Indices: 30974--31018 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
30964 TAACAGTACC
*
30974 GATACTGTTAAATCAATATA
1 GATACTATTAAATCAATATA
* * *
30994 GATATTATTAAATCAGTATC
1 GATACTATTAAATCAATATA
31014 GATAC
1 GATAC
31019 ATATATCGAT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (20 bp):
GATACTATTAAATCAATATA
Found at i:31139 original size:103 final size:103
Alignment explanation
Indices: 31021--31595 Score: 724
Period size: 103 Copynumber: 5.7 Consensus size: 103
31011 ATCGATACAT
* * * * * *
31021 ATATCGATACTGAAACCCAAAATAATAAAGCAGTGTCGACAATGCTGAGGCAGTGCCGATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
* * *
31086 CAAATCAGAATGCTAAAATGTTATCGATACCATATATG
66 CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
* * * *
31124 ATATCGATACTGAAACCC-AAATAATGAAGTAGTACCGATACTGATGAGGAAGTACCAATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
* *
31188 CAAAATATAATGCTAAAATGGTACCGATACCATATATG
66 CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
*
31226 ATATCGATACTGAAACCC--AA-AAT-AA-T-G-A---A-ACTGCTGAGGCAGTACCGATACTAT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
* * *
31280 CAAAACAGAATGCTAAAATGGTTCTGATATCATATATG
66 CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
* * * **
31318 ATATCGATACTGAAACCCAAAATAATAAAGTAGTATTGTTACTGCTGAGGCAGTAATGATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
* * *
31383 CAAAACATAATGCTAAAATGGTTCCGATATCATATATG
66 CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
* * *
31421 ATATCGGTACTGAATCCCAAAATAATGAAGTAGTATCGATACTGCTGAGGAAGTACCGATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
*
31486 CAAAACAGAATGCTAAAATGGTACTGATACCATATATG
66 CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
** * * * * *
31524 ACGTCGATACTAAAACCCAAAATAATGATGTAGTACCGATAATACTGAGGCAGTACCGATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
31589 CAAAACA
66 CAAAACA
31596 ACGGTCAAGT
Statistics
Matches: 409, Mismatches: 52, Indels: 22
0.85 0.11 0.05
Matches are distributed among these distances:
92 72 0.18
93 1 0.00
94 2 0.00
95 3 0.01
96 3 0.01
97 2 0.00
98 2 0.00
99 3 0.01
100 3 0.01
101 2 0.00
102 87 0.21
103 229 0.56
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.25
Consensus pattern (103 bp):
ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
Found at i:31251 original size:53 final size:53
Alignment explanation
Indices: 31094--31252 Score: 129
Period size: 53 Copynumber: 3.1 Consensus size: 53
31084 GTCAAATCAG
* *
31094 AATGCTAAAATGTTATCGATACCATATATGATATCGATACTGAAACCC-AAAT
1 AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAACCCAAAAT
* * * * * * *
31146 AATG---AAGTAGTACCGATA-C-TGATGAGGAAGTACCAATACTGTCAA---AATAT
1 AATGCTAAAATGGTACCGATACCAT-AT-ATG-A-TATCGATACTG-AAACCCAAAAT
31196 AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAACCCAAAAT
1 AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAACCCAAAAT
31249 AATG
1 AATG
31253 AAACTGCTGA
Statistics
Matches: 77, Mismatches: 16, Indels: 27
0.64 0.13 0.22
Matches are distributed among these distances:
47 1 0.01
48 3 0.04
49 12 0.16
50 10 0.13
51 18 0.23
52 7 0.09
53 22 0.29
54 3 0.04
55 1 0.01
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.26
Consensus pattern (53 bp):
AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAACCCAAAAT
Found at i:34131 original size:20 final size:20
Alignment explanation
Indices: 34108--34152 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
34098 TAACAGTACC
*
34108 GATACTGTTAAATCAATATA
1 GATACTATTAAATCAATATA
* * *
34128 GATATTATTAAATCAGTATC
1 GATACTATTAAATCAATATA
34148 GATAC
1 GATAC
34153 ATATATCGAT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (20 bp):
GATACTATTAAATCAATATA
Found at i:34273 original size:103 final size:103
Alignment explanation
Indices: 34155--34730 Score: 706
Period size: 103 Copynumber: 5.7 Consensus size: 103
34145 ATCGATACAT
* * * * * *
34155 ATATCGATACTGAAACCCAAAATAATAAAGCAGTGTGGACAATGCTGAGGCAGTGCCGATACTGT
1 ATATCGATACTGAAACCCAAAATAATAAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
* * *
34220 CAAATCAGAATGCTAAAATGTTATCGATACCATATATG
66 CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
* * * * *
34258 ATATCGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGATGAGGAAGTACCAATACTGT
1 ATATCGATACTGAAACCCAAAATAATAAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
* *
34323 CAAAATATAATGCTAAAATGGTACCGATACCATATATG
66 CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
*
34361 ATATCGATACTGAAACCC--AA-AAT-AA-T-G-A---A-ACTGCTGAGGCAGTACCGATACTAT
1 ATATCGATACTGAAACCCAAAATAATAAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
* * *
34415 CAAAACAGAATGCTAAAATGGTTCTGATATCATATATG
66 CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
* * **
34453 ATATCGATACTGAAACCCAAAATAATAAAGTAGTATTGTTACTGCTGAGGCAGTAATGATACTGT
1 ATATCGATACTGAAACCCAAAATAATAAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
* * *
34518 CAAAACATAATGCTAAAATGGTTCCGATATCATATATG
66 CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
* * * *
34556 ATATCGGTACTGAATCCCAAAATAATGAAGTAGTATCGATACTGCTGAGGAAGTACCGATACTGT
1 ATATCGATACTGAAACCCAAAATAATAAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
*
34621 CAAAACAGAATGCTAAAATGGTACTGATACCATATATG
66 CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
** * * * * * **
34659 ACGTGGATACTAAAACCCAAAATAATGATGTAGTACCGATACTAATGAGGCAGTACCGATACTGT
1 ATATCGATACTGAAACCCAAAATAATAAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
34724 CAAAACA
66 CAAAACA
34731 ACGGTCAAGT
Statistics
Matches: 408, Mismatches: 54, Indels: 22
0.84 0.11 0.05
Matches are distributed among these distances:
92 72 0.18
93 1 0.00
94 2 0.00
95 3 0.01
96 3 0.01
97 2 0.00
98 2 0.00
99 3 0.01
100 3 0.01
101 2 0.00
103 315 0.77
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.25
Consensus pattern (103 bp):
ATATCGATACTGAAACCCAAAATAATAAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
Found at i:34386 original size:53 final size:53
Alignment explanation
Indices: 34228--34387 Score: 138
Period size: 53 Copynumber: 3.1 Consensus size: 53
34218 GTCAAATCAG
* *
34228 AATGCTAAAATGTTATCGATACCATATATGATATCGATACTGAAACCCAAAAT
1 AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAACCCAAAAT
* * * * * * *
34281 AATG---AAGTAGTACCGATA-C-TGATGAGGAAGTACCAATACTGTCAA---AATAT
1 AATGCTAAAATGGTACCGATACCAT-AT-ATG-A-TATCGATACTG-AAACCCAAAAT
34331 AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAACCCAAAAT
1 AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAACCCAAAAT
34384 AATG
1 AATG
34388 AAACTGCTGA
Statistics
Matches: 78, Mismatches: 16, Indels: 26
0.65 0.13 0.22
Matches are distributed among these distances:
48 1 0.01
49 3 0.04
50 22 0.28
51 10 0.13
52 10 0.13
53 28 0.36
54 3 0.04
55 1 0.01
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.26
Consensus pattern (53 bp):
AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAACCCAAAAT
Found at i:34530 original size:195 final size:203
Alignment explanation
Indices: 34155--34730 Score: 733
Period size: 195 Copynumber: 2.8 Consensus size: 203
34145 ATCGATACAT
* * *
34155 ATATCGATACTGAAACCCAAAATAATAAAGCAGTGTGGACA-A-TGCTGAGGCAGTGCCGATACT
1 ATATCGATACTGAAACCC-AAATAATGAAGTA--GT--ACATACTGCTGAGGCAGTACCGATACT
* *
34218 GTCAAATCAGAATGCTAAAAT-GTTATCGATACCATATATGATATCGATACTGAAACCCAAAATA
61 GTCAAAACAGAATGCTAAAATGGTTCT-GATACCATATATGATATCGATACTGAAACCCAAAATA
* * *
34282 ATGAAGTAGTACCGATACTGATGAGGAAGTACCAATACTGTCAAAATATAATGCTAAAATGGTAC
125 ATGAAGTAGTACCGATACTGATGAGGCAGTACCGATACTGTCAAAACATAATGCTAAAATGGTAC
34347 CGATACCATATATG
190 CGATACCATATATG
*
34361 ATATCGATACTGAAACCC-AA-AAT-AA-T-G-A-A-ACTGCTGAGGCAGTACCGATACTATCAA
1 ATATCGATACTGAAACCCAAATAATGAAGTAGTACATACTGCTGAGGCAGTACCGATACTGTCAA
* *
34418 AACAGAATGCTAAAATGGTTCTGATATCATATATGATATCGATACTGAAACCCAAAATAATAAAG
66 AACAGAATGCTAAAATGGTTCTGATACCATATATGATATCGATACTGAAACCCAAAATAATGAAG
** * * ** * *
34483 TAGTATTGTTACTGCTGAGGCAGTAATGATACTGTCAAAACATAATGCTAAAATGGTTCCGATAT
131 TAGTACCGATACTGATGAGGCAGTACCGATACTGTCAAAACATAATGCTAAAATGGTACCGATAC
34548 CATATATG
196 CATATATG
* * *
34556 ATATCGGTACTGAATCCCAAAATAATGAAGTAGTATCGATACTGCTGAGGAAGTACCGATACTGT
1 ATATCGATACTGAAACCC-AAATAATGAAGTAGTA-C-ATACTGCTGAGGCAGTACCGATACTGT
* ** * *
34621 CAAAACAGAATGCTAAAATGGTACTGATACCATATATGACGTGGATACTAAAACCCAAAATAATG
63 CAAAACAGAATGCTAAAATGGTTCTGATACCATATATGATATCGATACTGAAACCCAAAATAATG
* *
34686 ATGTAGTACCGATACTAATGAGGCAGTACCGATACTGTCAAAACA
128 AAGTAGTACCGATACTGATGAGGCAGTACCGATACTGTCAAAACA
34731 ACGGTCAAGT
Statistics
Matches: 320, Mismatches: 37, Indels: 26
0.84 0.10 0.07
Matches are distributed among these distances:
194 2 0.01
195 159 0.50
196 4 0.01
197 2 0.01
198 4 0.01
199 2 0.01
200 1 0.00
201 1 0.00
202 3 0.01
203 3 0.01
204 2 0.01
205 1 0.00
206 136 0.43
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.25
Consensus pattern (203 bp):
ATATCGATACTGAAACCCAAATAATGAAGTAGTACATACTGCTGAGGCAGTACCGATACTGTCAA
AACAGAATGCTAAAATGGTTCTGATACCATATATGATATCGATACTGAAACCCAAAATAATGAAG
TAGTACCGATACTGATGAGGCAGTACCGATACTGTCAAAACATAATGCTAAAATGGTACCGATAC
CATATATG
Found at i:37240 original size:20 final size:20
Alignment explanation
Indices: 37217--37261 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
37207 TAACAGTACC
*
37217 GATACTGTTAAATCAATATA
1 GATACTATTAAATCAATATA
* * *
37237 GATATTATTAAATCAGTATC
1 GATACTATTAAATCAATATA
37257 GATAC
1 GATAC
37262 ATATATCGAT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (20 bp):
GATACTATTAAATCAATATA
Found at i:37382 original size:103 final size:103
Alignment explanation
Indices: 37264--37839 Score: 733
Period size: 103 Copynumber: 5.7 Consensus size: 103
37254 ATCGATACAT
* * * * * *
37264 ATATCGATACTGAAACCCAAAATAATAAAGCAGTGTCGACAATGCTGAGGCAGTGCCGATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
* * *
37329 CAAATCAGAATGCTAAAATGTTATCGATACCATATATG
66 CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
* * * *
37367 ATATCGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGATGAGGAAGTACCAATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
* *
37432 CAAAATATAATGCTAAAATGGTACCGATACCATATATG
66 CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
*
37470 ATATCGATACTGAAACCC--AA-AAT-AA-T-G-A---A-ACTGCTGAGGCAGTACCGATACTAT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
* * * *
37524 TAAAACAGAATGCTAAAATGGTTCTGATATCATATATG
66 CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
* * * **
37562 ATATCGATACTGAAACCCAAAATAATAAAGTAGTATTGTTACTGCTGAGGCAGTAATGATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
* * *
37627 CAAAACATAATGCTAAAATGGTTCCGATATCATATATG
66 CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
* * *
37665 ATATCGGTACTGAATCCCAAAATAATGAAGTAGTATCGATACTGCTGAGGAAGTACCGATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
*
37730 CAAAACAGAATGCTAAAATGGTACTGATACCATATATG
66 CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
** * * * *
37768 ACGTCGATACTAAAACCCAAAATAATGATGTAGTACCGATACTACTGAGGCAGTACCGATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
37833 CAAAACA
66 CAAAACA
37840 ACGGTCAAGT
Statistics
Matches: 409, Mismatches: 53, Indels: 22
0.85 0.11 0.05
Matches are distributed among these distances:
92 71 0.17
93 1 0.00
94 2 0.00
95 3 0.01
96 3 0.01
97 2 0.00
98 2 0.00
99 3 0.01
100 3 0.01
101 2 0.00
103 317 0.78
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.25
Consensus pattern (103 bp):
ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
Found at i:37495 original size:53 final size:53
Alignment explanation
Indices: 37337--37496 Score: 138
Period size: 53 Copynumber: 3.1 Consensus size: 53
37327 GTCAAATCAG
* *
37337 AATGCTAAAATGTTATCGATACCATATATGATATCGATACTGAAACCCAAAAT
1 AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAACCCAAAAT
* * * * * * *
37390 AATG---AAGTAGTACCGATA-C-TGATGAGGAAGTACCAATACTGTCAA---AATAT
1 AATGCTAAAATGGTACCGATACCAT-AT-ATG-A-TATCGATACTG-AAACCCAAAAT
37440 AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAACCCAAAAT
1 AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAACCCAAAAT
37493 AATG
1 AATG
37497 AAACTGCTGA
Statistics
Matches: 78, Mismatches: 16, Indels: 26
0.65 0.13 0.22
Matches are distributed among these distances:
48 1 0.01
49 3 0.04
50 22 0.28
51 10 0.13
52 10 0.13
53 28 0.36
54 3 0.04
55 1 0.01
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.26
Consensus pattern (53 bp):
AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAACCCAAAAT
Found at i:37639 original size:195 final size:203
Alignment explanation
Indices: 37264--37839 Score: 738
Period size: 195 Copynumber: 2.8 Consensus size: 203
37254 ATCGATACAT
* * * * * *
37264 ATATCGATACTGAAACCCAAAATAATAAAGCAGTGTCGACAATGCTGAGGCAGTGCCGATACTGT
1 ATATCGATACTGAAACCC-AAATAATGAAGTAGT-AC-ATACTGCTGAGGCAGTACCGATACTGT
* *
37329 CAAATCAGAATGCTAAAAT-GTTATCGATACCATATATGATATCGATACTGAAACCCAAAATAAT
63 CAAAACAGAATGCTAAAATGGTTCT-GATACCATATATGATATCGATACTGAAACCCAAAATAAT
* * * *
37393 GAAGTAGTACCGATACTGATGAGGAAGTACCAATACTGTCAAAATATAATGCTAAAATGGTACCG
127 GAAGTAGTACCGATACTGCTGAGGCAGTACCGATACTGTCAAAACATAATGCTAAAATGGTACCG
37458 ATACCATATATG
192 ATACCATATATG
* *
37470 ATATCGATACTGAAACCC-AA-AAT-AA-T-G-A-A-ACTGCTGAGGCAGTACCGATACTATTAA
1 ATATCGATACTGAAACCCAAATAATGAAGTAGTACATACTGCTGAGGCAGTACCGATACTGTCAA
* *
37527 AACAGAATGCTAAAATGGTTCTGATATCATATATGATATCGATACTGAAACCCAAAATAATAAAG
66 AACAGAATGCTAAAATGGTTCTGATACCATATATGATATCGATACTGAAACCCAAAATAATGAAG
** * ** * *
37592 TAGTATTGTTACTGCTGAGGCAGTAATGATACTGTCAAAACATAATGCTAAAATGGTTCCGATAT
131 TAGTACCGATACTGCTGAGGCAGTACCGATACTGTCAAAACATAATGCTAAAATGGTACCGATAC
37657 CATATATG
196 CATATATG
* * *
37665 ATATCGGTACTGAATCCCAAAATAATGAAGTAGTATCGATACTGCTGAGGAAGTACCGATACTGT
1 ATATCGATACTGAAACCC-AAATAATGAAGTAGTA-C-ATACTGCTGAGGCAGTACCGATACTGT
* ** *
37730 CAAAACAGAATGCTAAAATGGTACTGATACCATATATGACGTCGATACTAAAACCCAAAATAATG
63 CAAAACAGAATGCTAAAATGGTTCTGATACCATATATGATATCGATACTGAAACCCAAAATAATG
* *
37795 ATGTAGTACCGATACTACTGAGGCAGTACCGATACTGTCAAAACA
128 AAGTAGTACCGATACTGCTGAGGCAGTACCGATACTGTCAAAACA
37840 ACGGTCAAGT
Statistics
Matches: 319, Mismatches: 39, Indels: 24
0.84 0.10 0.06
Matches are distributed among these distances:
195 158 0.50
196 5 0.02
197 2 0.01
198 3 0.01
199 2 0.01
200 2 0.01
201 1 0.00
202 3 0.01
203 3 0.01
204 2 0.01
205 1 0.00
206 137 0.43
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.25
Consensus pattern (203 bp):
ATATCGATACTGAAACCCAAATAATGAAGTAGTACATACTGCTGAGGCAGTACCGATACTGTCAA
AACAGAATGCTAAAATGGTTCTGATACCATATATGATATCGATACTGAAACCCAAAATAATGAAG
TAGTACCGATACTGCTGAGGCAGTACCGATACTGTCAAAACATAATGCTAAAATGGTACCGATAC
CATATATG
Found at i:40254 original size:28 final size:28
Alignment explanation
Indices: 40190--40254 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 28
40180 TATCATTTTC
*
40190 ACTAAAAAATATAAAATTTTACTATTAT
1 ACTAAAAAATATAAAATTTTACTACTAT
* * *
40218 A-AAATAAAATATAAAATTTTAGTCCTAT
1 ACTAA-AAAATATAAAATTTTACTACTAT
*
40246 ACTAGAAAA
1 ACTAAAAAA
40255 GTTTTTGAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
27 2 0.07
28 26 0.90
29 1 0.03
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (28 bp):
ACTAAAAAATATAAAATTTTACTACTAT
Found at i:40372 original size:20 final size:20
Alignment explanation
Indices: 40349--40393 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
40339 TAACAGTACC
*
40349 GATACTGTTAAATCAATATA
1 GATACTATTAAATCAATATA
* * *
40369 GATATTATTAAATCAGTATC
1 GATACTATTAAATCAATATA
40389 GATAC
1 GATAC
40394 ATATATCGAT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (20 bp):
GATACTATTAAATCAATATA
Found at i:40548 original size:103 final size:103
Alignment explanation
Indices: 40396--40971 Score: 715
Period size: 103 Copynumber: 5.7 Consensus size: 103
40386 ATCGATACAT
* * * * * *
40396 ATATCGATACTAAAACCCAAAATAATAAAGCAGTGTCGACAATGCTGAGGCAGTACCGATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
* * * *
40461 CAAATCAGAATGCTAAAATGTTATCGATACCATATATG
66 CAAAACATAATGCTAAAATGGTACCGATACCATATATG
* * * * *
40499 ATATCGATACTGAAACCCAAATTAATGAAGTAGTACCGATACTGATGAGGAAGTACCAATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
*
40564 CAAAATATAATGCTAAAATGGTACCGATACCATATATG
66 CAAAACATAATGCTAAAATGGTACCGATACCATATATG
*
40602 ATATCGATACTGAAACCC--AA-AAT-AA-T-G-A---A-ACTGCTGAGGCAGTACCGATACTAT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
* * *
40656 CAAAACATAATGCTAAAATGGTTCTGATATCATATATG
66 CAAAACATAATGCTAAAATGGTACCGATACCATATATG
* * * * **
40694 ATATTGATACTGAAACCCAAAATAATAAAGTAGTATTGTTACTGCTGAGGCAGTAATGATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
* *
40759 CAAAACATAATGCTAAAATGGTTCCGATATCATATATG
66 CAAAACATAATGCTAAAATGGTACCGATACCATATATG
* * * *
40797 ATATCGGTACAGAATCCCAAAATAATGAAGTAGTATCGATACTGCTGAGGAAGTACCGATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
* *
40862 CAAAACAGAATGCTAAAATGGTACTGATACCATATATG
66 CAAAACATAATGCTAAAATGGTACCGATACCATATATG
** * * * *
40900 ACGTCGATACTAAAACCCAAAATAATGATGTAGTACCGATACTACTGAGGCAGTACCGATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
40965 CAAAACA
66 CAAAACA
40972 ACGGTCAAGT
Statistics
Matches: 407, Mismatches: 55, Indels: 22
0.84 0.11 0.05
Matches are distributed among these distances:
92 72 0.18
93 1 0.00
94 2 0.00
95 3 0.01
96 3 0.01
97 2 0.00
98 2 0.00
99 3 0.01
100 3 0.01
101 1 0.00
103 315 0.77
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.25
Consensus pattern (103 bp):
ATATCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTGT
CAAAACATAATGCTAAAATGGTACCGATACCATATATG
Found at i:40627 original size:53 final size:53
Alignment explanation
Indices: 40469--40628 Score: 129
Period size: 53 Copynumber: 3.1 Consensus size: 53
40459 GTCAAATCAG
* * *
40469 AATGCTAAAATGTTATCGATACCATATATGATATCGATACTGAAACCCAAATT
1 AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAACCCAAAAT
* * * * * * *
40522 AATG---AAGTAGTACCGATA-C-TGATGAGGAAGTACCAATACTGTCAA---AATAT
1 AATGCTAAAATGGTACCGATACCAT-AT-ATG-A-TATCGATACTG-AAACCCAAAAT
40572 AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAACCCAAAAT
1 AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAACCCAAAAT
40625 AATG
1 AATG
40629 AAACTGCTGA
Statistics
Matches: 77, Mismatches: 17, Indels: 26
0.64 0.14 0.22
Matches are distributed among these distances:
48 1 0.01
49 3 0.04
50 21 0.27
51 10 0.13
52 10 0.13
53 28 0.36
54 3 0.04
55 1 0.01
ACGTcount: A:0.42, C:0.16, G:0.15, T:0.26
Consensus pattern (53 bp):
AATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAACCCAAAAT
Found at i:40771 original size:195 final size:203
Alignment explanation
Indices: 40438--40971 Score: 708
Period size: 195 Copynumber: 2.7 Consensus size: 203
40428 GTGTCGACAA
* *
40438 TGCTGAGGCAGTACCGATACTGTCAAATCAGAATGCTAAAAT-GTTATCGATACCATATATGATA
1 TGCTGAGGCAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTTCT-GATACCATATATGATA
* * * *
40502 TCGATACTGAAACCCAAATTAATGAAGTAGTACCGATACTGATGAGGAAGTACCAATACTGTCAA
65 TCGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGCTGAGGCAGTACCGATACTGTCAA
* *
40567 AATATAATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAACCC-AA-AAT-AA-T
130 AACATAATGCTAAAATGGTACCGATACCATATATGATATCGATACAGAAACCCAAATAATGAAGT
40628 -G-A-A-AC
195 AGTACATAC
* * *
40633 TGCTGAGGCAGTACCGATACTATCAAAACATAATGCTAAAATGGTTCTGATATCATATATGATAT
1 TGCTGAGGCAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTTCTGATACCATATATGATAT
* * ** * **
40698 TGATACTGAAACCCAAAATAATAAAGTAGTATTGTTACTGCTGAGGCAGTAATGATACTGTCAAA
66 CGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGCTGAGGCAGTACCGATACTGTCAAA
* * * *
40763 ACATAATGCTAAAATGGTTCCGATATCATATATGATATCGGTACAGAATCCCAAAATAATGAAGT
131 ACATAATGCTAAAATGGTACCGATACCATATATGATATCGATACAGAAACCC-AAATAATGAAGT
40828 AGTATCGATAC
195 AGTA-C-ATAC
* * **
40839 TGCTGAGGAAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTACTGATACCATATATGACGT
1 TGCTGAGGCAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTTCTGATACCATATATGATAT
* * *
40904 CGATACTAAAACCCAAAATAATGATGTAGTACCGATACTACTGAGGCAGTACCGATACTGTCAAA
66 CGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGCTGAGGCAGTACCGATACTGTCAAA
40969 ACA
131 ACA
40972 ACGGTCAAGT
Statistics
Matches: 288, Mismatches: 39, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
195 155 0.54
196 4 0.01
197 2 0.01
198 3 0.01
199 2 0.01
200 1 0.00
201 1 0.00
202 1 0.00
205 1 0.00
206 118 0.41
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (203 bp):
TGCTGAGGCAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTTCTGATACCATATATGATAT
CGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGCTGAGGCAGTACCGATACTGTCAAA
ACATAATGCTAAAATGGTACCGATACCATATATGATATCGATACAGAAACCCAAATAATGAAGTA
GTACATAC
Found at i:43309 original size:20 final size:20
Alignment explanation
Indices: 43286--43330 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
43276 TAACAGTACC
*
43286 GATACTGTTAAATCAATATA
1 GATACTATTAAATCAATATA
* * *
43306 GATATTATTAAATCAGTATC
1 GATACTATTAAATCAATATA
43326 GATAC
1 GATAC
43331 ATATATCGAT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (20 bp):
GATACTATTAAATCAATATA
Found at i:43457 original size:103 final size:103
Alignment explanation
Indices: 43333--43809 Score: 626
Period size: 100 Copynumber: 4.7 Consensus size: 103
43323 ATCGATACAT
* * * *
43333 ATATCGATACTGAAACCCAAAATAATAAAGCAGTACCAATACTGCTGAGGCAGTACCGATACTGC
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGCTGAGGCAGTACCGATACTGT
* *
43398 CAAAACAGAATGCTAAAATAGTATCGATACCATATATG
66 CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
* * * * *
43436 ATATCGATACTGAAACCCAAAATAATGAAGTAGTACCGATATTGATGAGGAAGTATCAATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGCTGAGGCAGTACCGATACTGT
* * * * *
43501 CAAAATATAATGTTAAAACGGTACCGATATCATATATG
66 CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
* * * *
43539 ATATCGATACTGAAACCCAAAATAAT---GTAGTATCGTTACTGCTGAGACAGTACCGATACTAT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGCTGAGGCAGTACCGATACTGT
*
43601 CAAAACAGAATGCTAAAATGGTACCGATACCATATGTG
66 CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
* * * *
43639 ATATGGATAC-GAAACCCAAAATAATGAAGTAGTATCGATACTGCTTAGGAAGTACCGATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGCTGAGGCAGTACCGATACTGT
*
43703 CAAAACAGAATGTTAAAATGGTACCGATACC--ATAT-
66 CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
* * * * *
43738 ATATCGATACTGAAACCCAAAATAATGAAGTAGTAACGATACTACTGAGACAGTACTGCTACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGCTGAGGCAGTACCGATACTGT
43803 CAAAACA
66 CAAAACA
43810 ACGATCAAGC
Statistics
Matches: 323, Mismatches: 47, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
99 24 0.07
100 125 0.39
102 61 0.19
103 113 0.35
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.24
Consensus pattern (103 bp):
ATATCGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGCTGAGGCAGTACCGATACTGT
CAAAACAGAATGCTAAAATGGTACCGATACCATATATG
Found at i:43719 original size:202 final size:201
Alignment explanation
Indices: 43331--43809 Score: 656
Period size: 202 Copynumber: 2.4 Consensus size: 201
43321 GTATCGATAC
* * * *
43331 ATATATCGATACTGAAACCCAAAATAATAAAGCAGTACCAATACTGCTGAGGCAGTACCGATACT
1 ATATATCGATACTGAAACCCAAAATAAT--AGTAGTAACGATACTGCTGAGACAGTACCGATACT
* *
43396 GCCAAAACAGAATGCTAAAATAGTATCGATACCATATATGATATCGATACTGAAACCCAAAATAA
64 GTCAAAACAGAATGCTAAAATAGTACCGATACCATATATGATATCGATACTGAAACCCAAAATAA
* * * *
43461 TGAAGTAGTACCGATATTGATGAGGAAGTATCAATACTGTCAAAATATAATGTTAAAACGGTACC
129 TGAAGTAGTACCGATACTGATGAGGAAGTACCAATACTGTCAAAACAGAATGTTAAAACGGTACC
*
43526 GATATCATAT
194 GATA-C-CAT
* * *
43536 ATGATATCGATACTGAAACCCAAAATAAT-GTAGTATCGTTACTGCTGAGACAGTACCGATACTA
1 AT-ATATCGATACTGAAACCCAAAATAATAGTAGTAACGATACTGCTGAGACAGTACCGATACTG
* * *
43600 TCAAAACAGAATGCTAAAATGGTACCGATACCATATGTGATATGGATAC-GAAACCCAAAATAAT
65 TCAAAACAGAATGCTAAAATAGTACCGATACCATATATGATATCGATACTGAAACCCAAAATAAT
* * * * *
43664 GAAGTAGTATCGATACTGCTTAGGAAGTACCGATACTGTCAAAACAGAATGTTAAAATGGTACCG
130 GAAGTAGTACCGATACTGATGAGGAAGTACCAATACTGTCAAAACAGAATGTTAAAACGGTACCG
43729 ATACCAT
195 ATACCAT
* * *
43736 ATATATCGATACTGAAACCCAAAATAATGAAGTAGTAACGATACTACTGAGACAGTACTGCTACT
1 ATATATCGATACTGAAACCCAAAATAAT--AGTAGTAACGATACTGCTGAGACAGTACCGATACT
43801 GTCAAAACA
64 GTCAAAACA
43810 ACGATCAAGC
Statistics
Matches: 243, Mismatches: 27, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
199 26 0.11
200 4 0.02
201 1 0.00
202 111 0.46
203 73 0.30
205 2 0.01
206 26 0.11
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (201 bp):
ATATATCGATACTGAAACCCAAAATAATAGTAGTAACGATACTGCTGAGACAGTACCGATACTGT
CAAAACAGAATGCTAAAATAGTACCGATACCATATATGATATCGATACTGAAACCCAAAATAATG
AAGTAGTACCGATACTGATGAGGAAGTACCAATACTGTCAAAACAGAATGTTAAAACGGTACCGA
TACCAT
Found at i:46553 original size:19 final size:19
Alignment explanation
Indices: 46529--46566 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
46519 CCGATTTTGA
*
46529 AAAATGTGTTGCGATAGTT
1 AAAATGTGTTGCGAGAGTT
46548 AAAATGTGTTGCGAGAGTT
1 AAAATGTGTTGCGAGAGTT
46567 TGAAAAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.34
Consensus pattern (19 bp):
AAAATGTGTTGCGAGAGTT
Found at i:47073 original size:19 final size:19
Alignment explanation
Indices: 47051--47437 Score: 165
Period size: 21 Copynumber: 19.5 Consensus size: 19
47041 AACTTCTACT
*
47051 ATCGTAACGAATTTGGAAA
1 ATCGCAACGAATTTGGAAA
47070 ATCGCAACGAATTTGGAAA
1 ATCGCAACGAATTTGGAAA
* * **
47089 ATCGCAACGCAAACTTCGACT
1 ATCGCAACG--AATTTGGAAA
* * **
47110 ATCGCAACGCGAACTTCGACT
1 ATCGCAA--CGAATTTGGAAA
* *
47131 ATCGCAACGTGAAATT-GAACT
1 ATCGCAAC--GAATTTGGAA-A
*
47152 ATCGGAACGAATTTGGAAA
1 ATCGCAACGAATTTGGAAA
* * **
47171 ATCGCAACGCGAACTTCGACT
1 ATCGCAA--CGAATTTGGAAA
* **
47192 ATCGCAACGTGAACTTGGACT
1 ATCGCAAC--GAATTTGGAAA
47213 ATCGCAACGAATTTGGAAA
1 ATCGCAACGAATTTGGAAA
* * **
47232 ATCGCAACGCGAACTTCGACT
1 ATCGCAA--CGAATTTGGAAA
* * * **
47253 ATCTCAACGCGAACTTCGACT
1 ATCGCAA--CGAATTTGGAAA
47274 ATCGCAACGAATTTGGAAA
1 ATCGCAACGAATTTGGAAA
* **
47293 ATCGCAACGTGAACTTGGACT
1 ATCGCAAC--GAATTTGGAAA
47314 ATCGCAACGAATTTGGAAA
1 ATCGCAACGAATTTGGAAA
* * **
47333 ATCGCAACGCGAACTTCGACT
1 ATCGCAA--CGAATTTGGAAA
* *
47354 ATCGCAACGTGAACTT-GAACT
1 ATCGCAAC--GAATTTGGAA-A
*
47375 ATCGCAACGAATTTGGACTA
1 ATCGCAACGAATTTGGA-AA
**
47395 A--GGTA--AATTTGGAAA
1 ATCGCAACGAATTTGGAAA
47410 ATCGCAACGAATTTGGAAA
1 ATCGCAACGAATTTGGAAA
47429 ATCGCAACG
1 ATCGCAACG
47438 CGAACTTAGA
Statistics
Matches: 293, Mismatches: 48, Indels: 54
0.74 0.12 0.14
Matches are distributed among these distances:
15 2 0.01
16 8 0.03
17 2 0.01
18 2 0.01
19 111 0.38
20 10 0.03
21 156 0.53
23 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.22
Consensus pattern (19 bp):
ATCGCAACGAATTTGGAAA
Found at i:47114 original size:40 final size:40
Alignment explanation
Indices: 47070--47362 Score: 304
Period size: 40 Copynumber: 7.2 Consensus size: 40
47060 AATTTGGAAA
*
47070 ATCGCAACGAATTTGGAAAATCGCAACGCAAACTTCGACT
1 ATCGCAACGAATTTGGAAAATCGCAACGCGAACTTCGACT
* * ** * *
47110 ATCGCAACGCGAACTTCGACTATCGCAACGTGAAATT-GAACT
1 ATCGCAA--CGAATTTGGAAAATCGCAACGCGAACTTCG-ACT
*
47152 ATCGGAACGAATTTGGAAAATCGCAACGCGAACTTCGACT
1 ATCGCAACGAATTTGGAAAATCGCAACGCGAACTTCGACT
* ** * * **
47192 ATCGCAACGTGAACTTGGACTATCGCAA--CGAATTTGGAAA
1 ATCGCAAC--GAATTTGGAAAATCGCAACGCGAACTTCGACT
* * ** *
47232 ATCGCAACGCGAACTTCGACTATCTCAACGCGAACTTCGACT
1 ATCGCAA--CGAATTTGGAAAATCGCAACGCGAACTTCGACT
* *
47274 ATCGCAACGAATTTGGAAAATCGCAACGTGAACTTGGACT
1 ATCGCAACGAATTTGGAAAATCGCAACGCGAACTTCGACT
47314 ATCGCAACGAATTTGGAAAATCGCAACGCGAACTTCGACT
1 ATCGCAACGAATTTGGAAAATCGCAACGCGAACTTCGACT
47354 ATCGCAACG
1 ATCGCAACG
47363 TGAACTTGAA
Statistics
Matches: 206, Mismatches: 37, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
40 143 0.69
41 2 0.01
42 61 0.30
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (40 bp):
ATCGCAACGAATTTGGAAAATCGCAACGCGAACTTCGACT
Found at i:47115 original size:21 final size:21
Alignment explanation
Indices: 47030--47383 Score: 268
Period size: 21 Copynumber: 17.4 Consensus size: 21
47020 ATTTTCCAAA
*
47030 ATCGCAACGCGAACTTCTACT
1 ATCGCAACGCGAACTTCGACT
* * * **
47051 ATCGTAA--CGAATTTGGAAA
1 ATCGCAACGCGAACTTCGACT
* * **
47070 ATCGCAA--CGAATTTGGAAA
1 ATCGCAACGCGAACTTCGACT
*
47089 ATCGCAACGCAAACTTCGACT
1 ATCGCAACGCGAACTTCGACT
47110 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTCGACT
* *
47131 ATCGCAACGTGAAATT-GAACT
1 ATCGCAACGCGAACTTCG-ACT
* * * **
47152 ATCGGAA--CGAATTTGGAAA
1 ATCGCAACGCGAACTTCGACT
47171 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTCGACT
* *
47192 ATCGCAACGTGAACTTGGACT
1 ATCGCAACGCGAACTTCGACT
* * **
47213 ATCGCAA--CGAATTTGGAAA
1 ATCGCAACGCGAACTTCGACT
47232 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTCGACT
*
47253 ATCTCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTCGACT
* * **
47274 ATCGCAA--CGAATTTGGAAA
1 ATCGCAACGCGAACTTCGACT
* *
47293 ATCGCAACGTGAACTTGGACT
1 ATCGCAACGCGAACTTCGACT
* * **
47314 ATCGCAA--CGAATTTGGAAA
1 ATCGCAACGCGAACTTCGACT
47333 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTCGACT
*
47354 ATCGCAACGTGAACTT-GAACT
1 ATCGCAACGCGAACTTCG-ACT
47375 ATCGCAACG
1 ATCGCAACG
47384 AATTTGGACT
Statistics
Matches: 266, Mismatches: 54, Indels: 26
0.77 0.16 0.08
Matches are distributed among these distances:
19 89 0.33
20 3 0.01
21 174 0.65
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (21 bp):
ATCGCAACGCGAACTTCGACT
Found at i:47181 original size:61 final size:60
Alignment explanation
Indices: 47110--47322 Score: 345
Period size: 61 Copynumber: 3.5 Consensus size: 60
47100 AACTTCGACT
* *
47110 ATCGCAACGCGAACTTCGACTATCGCAACGTGAAATTGAACTATCGGAACGAATTTGGAAA
1 ATCGCAACGCGAACTTCGACTATCGCAACGTGAACTTG-ACTATCGCAACGAATTTGGAAA
47171 ATCGCAACGCGAACTTCGACTATCGCAACGTGAACTTGGACTATCGCAACGAATTTGGAAA
1 ATCGCAACGCGAACTTCGACTATCGCAACGTGAACTT-GACTATCGCAACGAATTTGGAAA
* *
47232 ATCGCAACGCGAACTTCGACTATCTCAACGCGAACTTCGACTATCGCAACGAATTTGGAAA
1 ATCGCAACGCGAACTTCGACTATCGCAACGTGAACTT-GACTATCGCAACGAATTTGGAAA
* *
47293 ATCGCAACGTGAACTTGGACTATCGCAACG
1 ATCGCAACGCGAACTTCGACTATCGCAACG
47323 AATTTGGAAA
Statistics
Matches: 143, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
61 142 0.99
62 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (60 bp):
ATCGCAACGCGAACTTCGACTATCGCAACGTGAACTTGACTATCGCAACGAATTTGGAAA
Found at i:47323 original size:101 final size:99
Alignment explanation
Indices: 47027--47456 Score: 451
Period size: 101 Copynumber: 4.3 Consensus size: 99
47017 GCGATTTTCC
* * *
47027 AAAATCGCAACGCGAACTTCTACTATCGTAACGAATTTGGAAAATCGCAACGAATTTGGAAAATC
1 AAAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAAAATCGCAACGAATTTGGAAAATC
* * * *
47092 GCAACGCAAACTTCGACTATCGCAACGCGAACTTCG
66 GCAACGTAAACTTGGACTATCGCAA--CGAATTTGG
** * * * * * * **
47128 ACTATCGCAACGTGAAATT-GAACTATCGGAACGAATTTGGAAAATCGCAACGCGAACTTCGACT
1 AAAATCGCAACGCGAACTTCG-ACTATCGCAACGAACTTGGAAAATCGCAA--CGAATTTGGAAA
*
47192 ATCGCAACGTGAACTTGGACTATCGCAACGAATTTGG
63 ATCGCAACGTAAACTTGGACTATCGCAACGAATTTGG
* * **
47229 AAAATCGCAACGCGAACTTCGACTATCTCAACGCGAACTTCGACTATCGCAACGAATTTGGAAAA
1 AAAATCGCAACGCGAACTTCGACTATCGCAA--CGAACTTGGAAAATCGCAACGAATTTGGAAAA
*
47294 TCGCAACGTGAACTTGGACTATCGCAACGAATTTGG
64 TCGCAACGTAAACTTGGACTATCGCAACGAATTTGG
*
47330 AAAATCGCAACGCGAACTTCGACTATCGCAACGTGAACTT-GAACTATCGCAACGAATTTGG---
1 AAAATCGCAACGCGAACTTCGACTATCGCAAC--GAACTTGGAA-AATCGCAACGAATTTGGAAA
* * * **
47391 A-C-TAAGGTAAATTTGGAAAATCGCAACGAATTTGG
63 ATCGCAACGTAAACTTGGACTATCGCAACGAATTTGG
*
47426 AAAATCGCAACGCGAACTTAGACTATCGCAA
1 AAAATCGCAACGCGAACTTCGACTATCGCAA
47457 AATCGCGTTG
Statistics
Matches: 282, Mismatches: 38, Indels: 23
0.82 0.11 0.07
Matches are distributed among these distances:
96 57 0.20
97 1 0.00
98 1 0.00
99 1 0.00
100 2 0.01
101 171 0.61
102 1 0.00
103 48 0.17
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.22
Consensus pattern (99 bp):
AAAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAAAATCGCAACGAATTTGGAAAATC
GCAACGTAAACTTGGACTATCGCAACGAATTTGG
Found at i:47358 original size:61 final size:59
Alignment explanation
Indices: 47070--47391 Score: 306
Period size: 61 Copynumber: 5.3 Consensus size: 59
47060 AATTTGGAAA
**
47070 ATCGCAACGAATTTGGAAAATCGCAACGCAAACTTCGACTATCGCAACGCGAACTTCGACT
1 ATCGCAACGAATTTGGAAAATCGCAACG--AACTTCGAAAATCGCAACGCGAACTTCGACT
* * * * *
47131 ATCGCAACGTGAAATT-GAACTATCGGAACGAATTTGGAAAATCGCAACGCGAACTTCGACT
1 ATCGCAAC--GAATTTGGAA-AATCGCAACGAACTTCGAAAATCGCAACGCGAACTTCGACT
* ** * *
47192 ATCGCAACGTGAACTTGGACTATCGCAACGAATTTGGAAAATCGCAACGCGAACTTCGACT
1 ATCGCAAC--GAATTTGGAAAATCGCAACGAACTTCGAAAATCGCAACGCGAACTTCGACT
* * * ** * * * *
47253 ATCTCAACGCGAACTTCGACTATCGCAACGAATTTGGAAAATCGCAACGTGAACTTGGACT
1 ATCGCAA--CGAATTTGGAAAATCGCAACGAACTTCGAAAATCGCAACGCGAACTTCGACT
** *
47314 ATCGCAACGAATTTGGAAAATCGCAACGCGAACTTCGACTATCGCAACGTGAACTT-GAACT
1 ATCGCAACGAATTTGGAAAATCGCAA--CGAACTTCGAAAATCGCAACGCGAACTTCG-ACT
47375 ATCGCAACGAATTTGGA
1 ATCGCAACGAATTTGGA
47392 CTAAGGTAAA
Statistics
Matches: 229, Mismatches: 23, Indels: 18
0.85 0.09 0.07
Matches are distributed among these distances:
59 15 0.07
60 1 0.00
61 194 0.85
62 5 0.02
63 14 0.06
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.21
Consensus pattern (59 bp):
ATCGCAACGAATTTGGAAAATCGCAACGAACTTCGAAAATCGCAACGCGAACTTCGACT
Found at i:47763 original size:103 final size:102
Alignment explanation
Indices: 47640--48017 Score: 528
Period size: 103 Copynumber: 3.7 Consensus size: 102
47630 ATCAATACAT
* * * * *
47640 ATATCGATACTGAAACCCAAAATAATAAAGCAATACCAATACTGTTGAGGCAGTATCGATACTGT
1 ATATCGATACTGAAACCCAAAATAATAAAGTAGTACCGATACTGCTGAGGAAGTATCGATACTGT
*
47705 CAAAACAGATTGCTAAAATGGTATCGATACCATATATG
66 CAAAACAGAATGCTAAAATGGTA-CGATACCATATATG
* * *
47743 ATATCGATACTGAAACCCAAAATAATAAAGTAGTACCGATACTGATGAGGAAGTACCAATACTGT
1 ATATCGATACTGAAACCCAAAATAATAAAGTAGTACCGATACTGCTGAGGAAGTATCGATACTGT
* *
47808 CAAAATATAATGCTAAAATGGTACTGATACCATATATG
66 CAAAACAGAATGCTAAAATGGTAC-GATACCATATATG
* * * *
47846 ATGTCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGAAGTATCGATACTAT
1 ATATCGATACTGAAACCCAAAATAATAAAGTAGTACCGATACTGCTGAGGAAGTATCGATACTGT
47911 CAAAACAGAATGCTAAAATGGTACGTATACC--ATAT-
66 CAAAACAGAATGCTAAAATGGTACG-ATACCATATATG
** * * *
47946 ATATCGATACTGAAACATAAAATAATGAAGTAGTATCGATACTGCTGAGGTAGTATCGATACTGT
1 ATATCGATACTGAAACCCAAAATAATAAAGTAGTACCGATACTGCTGAGGAAGTATCGATACTGT
48011 CAAAACA
66 CAAAACA
48018 ACGGTCAAGC
Statistics
Matches: 249, Mismatches: 24, Indels: 7
0.89 0.09 0.03
Matches are distributed among these distances:
100 67 0.27
101 4 0.02
102 2 0.01
103 176 0.71
ACGTcount: A:0.42, C:0.16, G:0.17, T:0.25
Consensus pattern (102 bp):
ATATCGATACTGAAACCCAAAATAATAAAGTAGTACCGATACTGCTGAGGAAGTATCGATACTGT
CAAAACAGAATGCTAAAATGGTACGATACCATATATG
Found at i:47907 original size:52 final size:52
Alignment explanation
Indices: 47849--48009 Score: 140
Period size: 52 Copynumber: 3.2 Consensus size: 52
47839 ATATATGATG
* *
47849 TCGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGAAGTA
1 TCGATACTGAAACACAAAATAATGAAGTAGTATCGATACTGCTGAGGTAGTA
* * ** * * *
47901 TCGATACT-ATCAAAACAGAATGCTAAAATGGTA-CGTATAC--CAT-A--TA-TA
1 TCGATACTGA--AACACAAAATAATGAAGTAGTATCG-ATACTGC-TGAGGTAGTA
*
47949 TCGATACTGAAACATAAAATAATGAAGTAGTATCGATACTGCTGAGGTAGTA
1 TCGATACTGAAACACAAAATAATGAAGTAGTATCGATACTGCTGAGGTAGTA
48001 TCGATACTG
1 TCGATACTG
48010 TCAAAACAAC
Statistics
Matches: 80, Mismatches: 17, Indels: 24
0.66 0.14 0.20
Matches are distributed among these distances:
47 18 0.22
48 13 0.16
49 4 0.05
51 5 0.06
52 22 0.28
53 18 0.22
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.26
Consensus pattern (52 bp):
TCGATACTGAAACACAAAATAATGAAGTAGTATCGATACTGCTGAGGTAGTA
Found at i:52886 original size:19 final size:19
Alignment explanation
Indices: 52864--52901 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
52854 TTATAAATAA
52864 CAGACAATTTTATTCATTT
1 CAGACAATTTTATTCATTT
52883 CAGACAATTTTATTCATTT
1 CAGACAATTTTATTCATTT
52902 AAGATTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.05, T:0.47
Consensus pattern (19 bp):
CAGACAATTTTATTCATTT
Found at i:54203 original size:58 final size:58
Alignment explanation
Indices: 54115--54240 Score: 193
Period size: 58 Copynumber: 2.2 Consensus size: 58
54105 GTTTGAAAAC
* **
54115 TTTA-GGGC-AAACATCTTAAAAGTATTTTAGGGAGTTATTCGGTAAAAACAGTATAG
1 TTTAGGGGCAAAACATCTTAAAAGTAATTTAGGGAGCAATTCGGTAAAAACAGTATAG
* *
54171 TTTAGGGGCAAAACATCTTGAAAGTAATTTAGGGAGCAATTCGGTAAAAAGAGTATAG
1 TTTAGGGGCAAAACATCTTAAAAGTAATTTAGGGAGCAATTCGGTAAAAACAGTATAG
54229 TTTAGGGGCAAA
1 TTTAGGGGCAAA
54241 TCTACATTTA
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
56 4 0.06
57 4 0.06
58 55 0.87
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.29
Consensus pattern (58 bp):
TTTAGGGGCAAAACATCTTAAAAGTAATTTAGGGAGCAATTCGGTAAAAACAGTATAG
Found at i:57511 original size:25 final size:27
Alignment explanation
Indices: 57460--57513 Score: 76
Period size: 25 Copynumber: 2.0 Consensus size: 27
57450 TTGCACCCGA
57460 AAAAAGTAAGGAAAAGTTAACATTTTAAG
1 AAAAAGTAAGGAAAA--TAACATTTTAAG
57489 AAAAAGTAA-GAAAA-AACATTTTAAG
1 AAAAAGTAAGGAAAATAACATTTTAAG
57514 TTCTACGTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 11 0.44
28 5 0.20
29 9 0.36
ACGTcount: A:0.59, C:0.04, G:0.15, T:0.22
Consensus pattern (27 bp):
AAAAAGTAAGGAAAATAACATTTTAAG
Found at i:59222 original size:20 final size:20
Alignment explanation
Indices: 59188--59244 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
59178 CCCAAAAAAA
* *
59188 TGAAGTAGTATCGATACTGC
1 TGAAGAAGTATCGATACTAC
* *
59208 TGAGGAAGTACCGATACTAC
1 TGAAGAAGTATCGATACTAC
59228 TGAAGAAGTATCGATAC
1 TGAAGAAGTATCGATAC
59245 GGTCAAAACA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.25
Consensus pattern (20 bp):
TGAAGAAGTATCGATACTAC
Found at i:59264 original size:123 final size:123
Alignment explanation
Indices: 59091--59315 Score: 326
Period size: 123 Copynumber: 1.8 Consensus size: 123
59081 ATAATGAAGC
* * * ** *
59091 AGTACCGATACTGCTGAGGCAGTACCGATATTGTCAAAACATAATACTAAAATGGTACCAATACT
1 AGTACCGATACTACTGAAGAAGTACCGATACGGTCAAAACATAATACTAAAATGGTACCAATACC
*
59156 ATATATGATATCGGTACTGAAACCCAAAAA-AATGAAGTAGTATCGATACTGCTGAGGA
66 ATATATGATATCGATACTGAAA-CCAAAAATAATGAAGTAGTATCGATACTGCTGAGGA
* * * *
59214 AGTACCGATACTACTGAAGAAGTATCGATACGGTCAAAACATAATGCTAAAATGGTATCGATACC
1 AGTACCGATACTACTGAAGAAGTACCGATACGGTCAAAACATAATACTAAAATGGTACCAATACC
*
59279 ATATATGATATCGATATTGAAACCAAAAATAATGAAG
66 ATATATGATATCGATACTGAAACCAAAAATAATGAAG
59316 CAATACCGGG
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
122 7 0.08
123 82 0.92
ACGTcount: A:0.42, C:0.16, G:0.18, T:0.24
Consensus pattern (123 bp):
AGTACCGATACTACTGAAGAAGTACCGATACGGTCAAAACATAATACTAAAATGGTACCAATACC
ATATATGATATCGATACTGAAACCAAAAATAATGAAGTAGTATCGATACTGCTGAGGA
Found at i:59311 original size:53 final size:54
Alignment explanation
Indices: 59248--59518 Score: 139
Period size: 53 Copynumber: 5.2 Consensus size: 54
59238 TCGATACGGT
* *
59248 CAAAACATAATGCTAAAATGGTATCGATACCATATATGATATCGATATTGAAAC
1 CAAAACATAATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAAC
** * * * *
59302 CAAAA-ATAATG--AAGCAA---TACCGGGACAAT-TGAGGCAGTACCGATACTG---T
1 CAAAACATAATGCTAA--AATGGTACCGATACCATAT-ATG-A-TATCGATACTGAAAC
* *
59351 CAAAACAGAATGCTAAAATGGTACCGATACCAAATATGATATCGATACTGAAAC
1 CAAAACATAATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAAC
* * * ** * *
59405 CAAAA-ATAATG---AAGTAGTATCGATACTGT-TGAGGAAGTATCGATACTG---T
1 CAAAACATAATGCTAAAATGGTACCGATACCATAT-ATG-A-TATCGATACTGAAAC
* * * *
59454 CAAAATATAATGCTAAAATGGTACCAATACCATACATGATATCGATATTGAAAC
1 CAAAACATAATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAAC
*
59508 CCAAA-ATAATG
1 CAAAACATAATG
59519 AAGTAGTATC
Statistics
Matches: 155, Mismatches: 36, Indels: 53
0.64 0.15 0.22
Matches are distributed among these distances:
49 12 0.08
50 37 0.24
51 24 0.15
52 24 0.15
53 43 0.28
54 15 0.10
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24
Consensus pattern (54 bp):
CAAAACATAATGCTAAAATGGTACCGATACCATATATGATATCGATACTGAAAC
Found at i:59335 original size:123 final size:123
Alignment explanation
Indices: 59091--59348 Score: 311
Period size: 123 Copynumber: 2.1 Consensus size: 123
59081 ATAATGAAGC
* * * ** *
59091 AGTACCGATACTGCTGAGGCAGTACCGATATTGTCAAAACATAATACTAAAATGGTACCAATACT
1 AGTACCGATACTACTGAAGAAGTACCGATACGGTCAAAACATAATACTAAAATGGTACCAATACC
* * * * * **
59156 ATATATGATATCGGTACTGAAACCCAAAAAAATGAAGTAGTATCGATACTGCTGAGGA
66 ATATATGATATCGATACTGAAACCCAAAAAAATGAAGCAATACCGAGACAACTGAGGA
* * * *
59214 AGTACCGATACTACTGAAGAAGTATCGATACGGTCAAAACATAATGCTAAAATGGTATCGATACC
1 AGTACCGATACTACTGAAGAAGTACCGATACGGTCAAAACATAATACTAAAATGGTACCAATACC
* * * *
59279 ATATATGATATCGATATTGAAA-CCAAAAATAATGAAGCAATACCGGGACAATTGAGGC
66 ATATATGATATCGATACTGAAACCCAAAAA-AATGAAGCAATACCGAGACAACTGAGGA
59337 AGTACCGATACT
1 AGTACCGATACT
59349 GTCAAAACAG
Statistics
Matches: 113, Mismatches: 21, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
122 7 0.06
123 106 0.94
ACGTcount: A:0.41, C:0.17, G:0.19, T:0.24
Consensus pattern (123 bp):
AGTACCGATACTACTGAAGAAGTACCGATACGGTCAAAACATAATACTAAAATGGTACCAATACC
ATATATGATATCGATACTGAAACCCAAAAAAATGAAGCAATACCGAGACAACTGAGGA
Found at i:59522 original size:103 final size:103
Alignment explanation
Indices: 59214--59541 Score: 440
Period size: 103 Copynumber: 3.2 Consensus size: 103
59204 CTGCTGAGGA
* * *
59214 AGTACCGATACTACTGAAGAAGTATCGATACGGTCAAAACATAATGCTAAAATGGTATCGATACC
1 AGTACCGATACTACTGAGGAAGTATCGATACTGTCAAAACATAATGCTAAAATGGTACCGATACC
*
59279 ATATATGATATCGATATTGAAACCAAAAATAATGAAGC
66 ATATATGATATCGATATTGAAACCAAAAATAATGAAGT
* ** * * * * *
59317 AATACCGGGACAATTGAGGCAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTACCGATACC
1 AGTACCGATACTACTGAGGAAGTATCGATACTGTCAAAACATAATGCTAAAATGGTACCGATACC
* *
59382 AAATATGATATCGATACTGAAACCAAAAATAATGAAGT
66 ATATATGATATCGATATTGAAACCAAAAATAATGAAGT
* ** * *
59420 AGTATCGATACTGTTGAGGAAGTATCGATACTGTCAAAATATAATGCTAAAATGGTACCAATACC
1 AGTACCGATACTACTGAGGAAGTATCGATACTGTCAAAACATAATGCTAAAATGGTACCGATACC
* *
59485 ATACATGATATCGATATTGAAACCCAAAATAATGAAGT
66 ATATATGATATCGATATTGAAACCAAAAATAATGAAGT
* * *
59523 AGTATCGTTACTGCTGAGG
1 AGTACCGATACTACTGAGG
59542 CAGAAACGAT
Statistics
Matches: 194, Mismatches: 31, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
103 194 1.00
ACGTcount: A:0.42, C:0.16, G:0.18, T:0.24
Consensus pattern (103 bp):
AGTACCGATACTACTGAGGAAGTATCGATACTGTCAAAACATAATGCTAAAATGGTACCGATACC
ATATATGATATCGATATTGAAACCAAAAATAATGAAGT
Found at i:63921 original size:27 final size:28
Alignment explanation
Indices: 63878--63933 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
63868 GTATCAAAAA
*
63878 TTAATTATTAAGTAATAAA-TTTATTTT
1 TTAATTATTAAGTAATAAAGTGTATTTT
*
63905 TTAATTA-TAATTAAATAAAGTGTATTTT
1 TTAATTATTAAGT-AATAAAGTGTATTTT
63933 T
1 T
63934 GAAAAATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 4 0.16
27 13 0.52
28 8 0.32
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (28 bp):
TTAATTATTAAGTAATAAAGTGTATTTT
Found at i:66269 original size:20 final size:20
Alignment explanation
Indices: 66227--66278 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
66217 AAATATTGTT
*
66227 GTACCGATATTGCTACAATA
1 GTACCGATACTGCTACAATA
*
66247 GTACCGATACTGTTA-AATCA
1 GTACCGATACTGCTACAAT-A
*
66267 GTATCGATACTG
1 GTACCGATACTG
66279 AAACCCAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 3 0.11
20 25 0.89
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (20 bp):
GTACCGATACTGCTACAATA
Found at i:66306 original size:32 final size:32
Alignment explanation
Indices: 66265--66339 Score: 150
Period size: 32 Copynumber: 2.3 Consensus size: 32
66255 ACTGTTAAAT
66265 CAGTATCGATACTGAAACCCAAAATAATGAAG
1 CAGTATCGATACTGAAACCCAAAATAATGAAG
66297 CAGTATCGATACTGAAACCCAAAATAATGAAG
1 CAGTATCGATACTGAAACCCAAAATAATGAAG
66329 CAGTATCGATA
1 CAGTATCGATA
66340 TTGCTGAGGC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.45, C:0.19, G:0.16, T:0.20
Consensus pattern (32 bp):
CAGTATCGATACTGAAACCCAAAATAATGAAG
Found at i:66450 original size:103 final size:103
Alignment explanation
Indices: 66300--66781 Score: 569
Period size: 103 Copynumber: 4.7 Consensus size: 103
66290 AATGAAGCAG
* * * *
66300 TATCGATACTGAAACCCAAAATAATGAAGCAGTATCGATATTGCTGAGGCAGTACCGATACTGTC
1 TATCGATACTGAAAACCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTATC
* * *
66365 AAAACAGAATACTAAAATGGTA-TCGATACCATATAAGA
66 AAAACAGAATGCTAAAATGATACT-GATACCATATATGA
* * * * * * * *
66403 TATCGATA-TTAAAACAAAATATAATGAAGTATTACCGATACTACTGAGGAAGTACCGATATTGT
1 TATCGATACTGAAAACCAAA-ATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTAT
*
66467 CAAAACAGAATGCTAAAAAGATACTGATACCATATATGA
65 CAAAACAGAATGCTAAAATGATACTGATACCATATATGA
* * * * * *
66506 TATCGACACTGAAACCCAAAATAACGAAGCAGTATC-ACTACTGTTGAGGCAGTACCAATACTAT
1 TATCGATACTGAAAACCAAAATAATGAAGTAGTATCGA-TACTGCTGAGGCAGTACCGATACTAT
* **
66570 CAAAACAGAATGCTAAAATGGTACCAATACCATATATGA
65 CAAAACAGAATGCTAAAATGATACTGATACCATATATGA
* * * *
66609 TATTGATACTGAAACCCAAAATAATGAAGTAGTATCGATACTGC-AAGGAAGTACCGATACTATC
1 TATCGATACTGAAAACCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTATC
* *
66673 AAAACAGAATGCTAAAATAATACTGATACCATTTATGA
66 AAAACAGAATGCTAAAATGATACTGATACCATATATGA
* * * * *
66711 TATTGATACT-AAAACCCAAAATAATGAAGTAGTACCGATATTGCCGAGGCAGTACCAATACTAT
1 TATCGATACTGAAAA-CCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTAT
66775 CAAAACA
65 CAAAACA
66782 ACGGTCAAGC
Statistics
Matches: 321, Mismatches: 51, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
101 3 0.01
102 96 0.30
103 212 0.66
104 10 0.03
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.24
Consensus pattern (103 bp):
TATCGATACTGAAAACCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCGATACTATC
AAAACAGAATGCTAAAATGATACTGATACCATATATGA
Found at i:66762 original size:205 final size:206
Alignment explanation
Indices: 66300--66781 Score: 675
Period size: 206 Copynumber: 2.3 Consensus size: 206
66290 AATGAAGCAG
* *
66300 TATCGATACTGAAACCCAAAATAATGAAGCAGTATCGATATTGCTGAGGCAGTACCGATACTGTC
1 TATCGATACTGAAACCCAAAATAATGAAGCAGTATCGATATTGCTGAGGCAGTACCAATACTATC
* * *
66365 AAAACAGAATACTAAAATGGTATCGATACCATATAAGATATCGATATTAAAACAAAATATAATGA
66 AAAACAGAATACTAAAATGGTACCAATACCATATAAGATATCGATATGAAAACAAAATATAATGA
* * * *
66430 AGTATTACCGATACTACTGAGGAAGTACCGATATTGTCAAAACAGAATGCTAAAAAGATACTGAT
131 AGTAGTACCGATACTACTAAGGAAGTACCGATACTATCAAAACAGAATGCTAAAAAGATACTGAT
66495 ACCATATATGA
196 ACCATATATGA
* * * *
66506 TATCGACACTGAAACCCAAAATAACGAAGCAGTATC-ACTACTGTTGAGGCAGTACCAATACTAT
1 TATCGATACTGAAACCCAAAATAATGAAGCAGTATCGA-TATTGCTGAGGCAGTACCAATACTAT
* * * * *
66570 CAAAACAGAATGCTAAAATGGTACCAATACCATATATGATATTGATACTGAAACCCAAA-ATAAT
65 CAAAACAGAATACTAAAATGGTACCAATACCATATAAGATATCGATA-TGAAAACAAAATATAAT
* *
66634 GAAGTAGTATCGATACTGC-AAGGAAGTACCGATACTATCAAAACAGAATGCTAAAATA-ATACT
129 GAAGTAGTACCGATACTACTAAGGAAGTACCGATACTATCAAAACAGAATGCTAAAA-AGATACT
*
66697 GATACCATTTATGA
193 GATACCATATATGA
* * * * *
66711 TATTGATACTAAAACCCAAAATAATGAAGTAGTACCGATATTGCCGAGGCAGTACCAATACTATC
1 TATCGATACTGAAACCCAAAATAATGAAGCAGTATCGATATTGCTGAGGCAGTACCAATACTATC
66776 AAAACA
66 AAAACA
66782 ACGGTCAAGC
Statistics
Matches: 242, Mismatches: 30, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
205 113 0.47
206 121 0.50
207 8 0.03
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.24
Consensus pattern (206 bp):
TATCGATACTGAAACCCAAAATAATGAAGCAGTATCGATATTGCTGAGGCAGTACCAATACTATC
AAAACAGAATACTAAAATGGTACCAATACCATATAAGATATCGATATGAAAACAAAATATAATGA
AGTAGTACCGATACTACTAAGGAAGTACCGATACTATCAAAACAGAATGCTAAAAAGATACTGAT
ACCATATATGA
Found at i:67879 original size:20 final size:20
Alignment explanation
Indices: 67815--67880 Score: 71
Period size: 20 Copynumber: 3.3 Consensus size: 20
67805 ATTATTGTAC
* *
67815 CGATACTGCTATAA-CAGTAC
1 CGATACTGTTA-AATCAGTAT
* *
67835 CGATACTGTTAAATCAATCT
1 CGATACTGTTAAATCAGTAT
*
67855 AGATACTGTTAAATCAGTAT
1 CGATACTGTTAAATCAGTAT
67875 CGATAC
1 CGATAC
67881 ATATATCGAT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
19 2 0.05
20 35 0.95
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.30
Consensus pattern (20 bp):
CGATACTGTTAAATCAGTAT
Found at i:68004 original size:103 final size:103
Alignment explanation
Indices: 67883--68362 Score: 529
Period size: 103 Copynumber: 4.7 Consensus size: 103
67873 ATCGATACAT
* * * *
67883 ATATCGATATTGAAACCCAAAATAATGAAGCAGCATCGATACTACTGAGGCAGTACCAATACTCT
1 ATATCGATATTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCAATACTGT
* *
67948 CAAAACAGAATTCAAAAATGGTATCGATACCCTATATG
66 CAAAACAGAATTCTAAAATGGTATCGATACCATATATG
* * * * * * **
67986 ATATCGATATTGAAACCCAAAACAATGAAGTGGTACCAATACTGATAAGAAAGTACCAATACTGT
1 ATATCGATATTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCAATACTGT
* *
68051 CAAAACATAATACTAAAATGGTA-CTGATACCATATATG
66 CAAAACAGAATTCTAAAATGGTATC-GATACCATATATG
* * ** * * *
68089 ATATCGATACTGAAATCCAAAATAATGAAACAGTATCGATACTGTTGTGGCAGTACTGAA-ACTG
1 ATATCGATATTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTAC-CAATACTG
* * *
68153 TCAAAACAGAATGCTAAAATGGTATCGATACCACAAATG
65 TCAAAACAGAATTCTAAAATGGTATCGATACCATATATG
* * * * * *
68192 ATATCGACACT-AAACCCAAAATAATTAAGTAGTATCGATACTGCTGAGGAAGTACCGATAATGT
1 ATATCGATATTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCAATACTGT
* * * *
68256 CAACACAAAATTCTAAAATGGTACCAATACCATATATG
66 CAAAACAGAATTCTAAAATGGTATCGATACCATATATG
* * * *
68294 ATATCGAT-TCTAAAACCCAAAATAATGAAGTAGTA-CACATACTGGTGAGGCAGTACCAATAGT
1 ATATCGATAT-TGAAACCCAAAATAATGAAGTAGTATC-GATACTGCTGAGGCAGTACCAATACT
68357 GTCAAA
64 GTCAAA
68363 CAACGATCAA
Statistics
Matches: 309, Mismatches: 61, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
101 1 0.00
102 82 0.27
103 223 0.72
104 3 0.01
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.24
Consensus pattern (103 bp):
ATATCGATATTGAAACCCAAAATAATGAAGTAGTATCGATACTGCTGAGGCAGTACCAATACTGT
CAAAACAGAATTCTAAAATGGTATCGATACCATATATG
Found at i:68362 original size:205 final size:206
Alignment explanation
Indices: 67883--68362 Score: 558
Period size: 205 Copynumber: 2.3 Consensus size: 206
67873 ATCGATACAT
* * *
67883 ATATCGATATTGAAACCCAAAATAATGAAGCAG--CATCGATACTACTGAGGCAGTACCAATACT
1 ATATCGATACTAAAACCCAAAATAATGAAGCAGTACA-C-ATACTGCTGAGGCAGTACCAATACT
* * * * *
67946 CTCAAAACAGAATTCAAAAATGGTATCGATACCCTATATGATATCGATATTGAAACCCAAAACAA
64 GTCAAAACAGAATGCAAAAATGGTATCGATACCCTAAATGATATCGACACTGAAACCCAAAACAA
* * * *
68011 TGAAGTGGTACCAATACTGATAAGAAAGTACCAATACTGTCAAAACATAATACTAAAATGGTACT
129 TGAAGTAGTACCAATACTGATAAGAAAGTACCAATAATGTCAAAACAAAATACTAAAATGGTACC
*
68076 GATACCATATATG
194 AATACCATATATG
* * * * * * *
68089 ATATCGATACTGAAATCCAAAATAATGAAACAGTATC-GATACTGTTGTGGCAGTACTGAA-ACT
1 ATATCGATACTAAAACCCAAAATAATGAAGCAGTA-CACATACTGCTGAGGCAGTAC-CAATACT
* *
68152 GTCAAAACAGAATGCTAAAATGGTATCGATACCAC-AAATGATATCGACACT-AAACCCAAAATA
64 GTCAAAACAGAATGCAAAAATGGTATCGATACC-CTAAATGATATCGACACTGAAACCCAAAACA
* * * * * * * * *
68215 ATTAAGTAGTATCGATACTGCTGAGGAAGTACCGATAATGTCAACACAAAATTCTAAAATGGTAC
128 ATGAAGTAGTACCAATACTGATAAGAAAGTACCAATAATGTCAAAACAAAATACTAAAATGGTAC
68280 CAATACCATATATG
193 CAATACCATATATG
* * * *
68294 ATATCGATTCTAAAACCCAAAATAATGAAGTAGTACACATACTGGTGAGGCAGTACCAATAGTGT
1 ATATCGATACTAAAACCCAAAATAATGAAGCAGTACACATACTGCTGAGGCAGTACCAATACTGT
68359 CAAA
66 CAAA
68363 CAACGATCAA
Statistics
Matches: 228, Mismatches: 39, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
204 3 0.01
205 130 0.57
206 91 0.40
207 3 0.01
209 1 0.00
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.24
Consensus pattern (206 bp):
ATATCGATACTAAAACCCAAAATAATGAAGCAGTACACATACTGCTGAGGCAGTACCAATACTGT
CAAAACAGAATGCAAAAATGGTATCGATACCCTAAATGATATCGACACTGAAACCCAAAACAATG
AAGTAGTACCAATACTGATAAGAAAGTACCAATAATGTCAAAACAAAATACTAAAATGGTACCAA
TACCATATATG
Found at i:69592 original size:103 final size:103
Alignment explanation
Indices: 69460--69900 Score: 496
Period size: 103 Copynumber: 4.3 Consensus size: 103
69450 ATCGATACAT
* * * * *
69460 ATATCGATATTGAAATCCAAAATAATGAAGCAGTATCTATACTACTGAGGCAGTACCGATACTCT
1 ATATCGATACTGAAACCCAAAATAATGAAGCAGTATCGATACTACTGAGGAAGTACCGATACTGT
*
69525 CAAAACAGAAT-TTAAAAATGGTATCGATACCATATATG
66 CAAAACAGAATGCT-AAAATGGTATCGATACCATATATG
* ** * * * *
69563 ATATCGATACTGAAACCCAAAACAATGAAGTGGTACCAATACTGA-TAAGGAAGTACCAATACTG
1 ATATCGATACTGAAACCCAAAATAATGAAGCAGTATCGATACT-ACTGAGGAAGTACCGATACTG
* *
69627 TCAAAACATAATACTAAAATGGTATCGATACCATATATG
65 TCAAAACAGAATGCTAAAATGGTATCGATACCATATATG
* * * * * *
69666 ATATCGATACTGAAATCAAAAATAATGAAGCAGTATCGATACTGCT-ATGGCAGTACTGAAACTG
1 ATATCGATACTGAAACCCAAAATAATGAAGCAGTATCGATACTACTGA-GGAAGTACCGATACTG
* *
69730 TCAAAACAGAATGCTAAAATGGTATCGATACCACAAATG
65 TCAAAACAGAATGCTAAAATGGTATCGATACCATATATG
* * * ** * * *
69769 ATATCGACACT-AAACCCAAAATAATGAAGTATTATCGATACTGTTGAGTAAGTACAGATAATGT
1 ATATCGATACTGAAACCCAAAATAATGAAGCAGTATCGATACTACTGAGGAAGTACCGATACTGT
* *
69833 CAACACAAAATGCTAAAATGGTA-CGAATACCATATATG
66 CAAAACAGAATGCTAAAATGGTATCG-ATACCATATATG
* *
69871 ATATCGATTCTAAAACCCAAAATAATGAAG
1 ATATCGATACTGAAACCCAAAATAATGAAG
69901 TTGTACAGAT
Statistics
Matches: 285, Mismatches: 46, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
101 2 0.01
102 82 0.29
103 199 0.70
104 2 0.01
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.25
Consensus pattern (103 bp):
ATATCGATACTGAAACCCAAAATAATGAAGCAGTATCGATACTACTGAGGAAGTACCGATACTGT
CAAAACAGAATGCTAAAATGGTATCGATACCATATATG
Found at i:69925 original size:205 final size:206
Alignment explanation
Indices: 69460--69927 Score: 563
Period size: 205 Copynumber: 2.3 Consensus size: 206
69450 ATCGATACAT
* * * * *
69460 ATATCGATATTGAAATCC-AAAATAATGAAGCAGTATCTATACTACTGAGGCAGTACCGATACTC
1 ATATCGATACT-AAAACCAAAAATAATGAAGCAGTATCGATACTGCTGAGGCAGTACCGAAACTC
* * * *
69524 TCAAAACAGAATTTAAAAATGGTATCGATACCATATATGATATCGATACTGAAACCCAAAACAAT
65 TCAAAACAGAATCTAAAAATGGTATCGATACCACAAATGATATCGACACTGAAACCCAAAACAAT
* * *
69589 GAAGTGGTACCAATACTGATAAGGAAGTACCAATACTGTCAAAACATAATACTAAAATGGTATCG
130 GAAGTAGTACCAATACTGATAAGGAAGTACCAATAATGTCAAAACAAAATACTAAAATGGTATCG
69654 ATACCATATATG
195 ATACCATATATG
* * * *
69666 ATATCGATACTGAAATCAAAAATAATGAAGCAGTATCGATACTGCT-ATGGCAGTACTGAAACTG
1 ATATCGATACTAAAACCAAAAATAATGAAGCAGTATCGATACTGCTGA-GGCAGTACCGAAACTC
*
69730 TCAAAACAGAATGCT-AAAATGGTATCGATACCACAAATGATATCGACACT-AAACCCAAAATAA
65 TCAAAACAGAAT-CTAAAAATGGTATCGATACCACAAATGATATCGACACTGAAACCCAAAACAA
* * * * * * * *
69793 TGAAGTATTATCGATACTGTTGAGTAAGTA-CAGATAATGTCAACACAAAATGCTAAAATGGTA-
129 TGAAGTAGTACCAATACTGATAAGGAAGTACCA-ATAATGTCAAAACAAAATACTAAAATGGTAT
69856 CGAATACCATATATG
193 CG-ATACCATATATG
* * ** *
69871 ATATCGATTCTAAAACCCAAAATAATGAAGTTGTA-CAGATACTGGTGAGGCAGTACC
1 ATATCGATACTAAAACCAAAAATAATGAAGCAGTATC-GATACTGCTGAGGCAGTACC
69928 AATAGTGTCA
Statistics
Matches: 222, Mismatches: 33, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
204 5 0.02
205 122 0.55
206 94 0.42
207 1 0.00
ACGTcount: A:0.43, C:0.17, G:0.16, T:0.25
Consensus pattern (206 bp):
ATATCGATACTAAAACCAAAAATAATGAAGCAGTATCGATACTGCTGAGGCAGTACCGAAACTCT
CAAAACAGAATCTAAAAATGGTATCGATACCACAAATGATATCGACACTGAAACCCAAAACAATG
AAGTAGTACCAATACTGATAAGGAAGTACCAATAATGTCAAAACAAAATACTAAAATGGTATCGA
TACCATATATG
Found at i:71173 original size:103 final size:103
Alignment explanation
Indices: 71050--71496 Score: 472
Period size: 103 Copynumber: 4.4 Consensus size: 103
71040 ATCAGTATTG
* * * *
71050 ATATAT-ATATCGATATTGAAATCCAAAATAATGAAGCAGTATTGATACTACTGAGGCAGTACCG
1 ATATATGATATCGATACTGAAACCCAAAATAATGAAGCAGTATCGATACTACTGAGGAAGTACCG
* * *
71114 ATACTCTCAAAACAAAATTCAAAAATGGTATCGATACC
66 ATACTGTCAAAACAAAATGCTAAAATGGTATCGATACC
* ** * * * *
71152 ATATATGATATCGATACTGAAACCCAAAACAATGAAGTGGTACCAATACTGA-TAACGAAGTACC
1 ATATATGATATCGATACTGAAACCCAAAATAATGAAGCAGTATCGATACT-ACTGAGGAAGTACC
* * * * *
71216 AATGCTGTCAAAACATAATACTAAAATGGTACCGATACC
65 GATACTGTCAAAACAAAATGCTAAAATGGTATCGATACC
* * * * * *
71255 ATATATGATATCGATACTGAAATCCAAAATAATGAAGCAGTATTGATACTGCTGTGGCAGTACTG
1 ATATATGATATCGATACTGAAACCCAAAATAATGAAGCAGTATCGATACTACTGAGGAAGTACCG
* *
71320 AAACTGTCAAAACAGAATGCTAAAATGGTATCGATACC
66 ATACTGTCAAAACAAAATGCTAAAATGGTATCGATACC
* * * * * **
71358 ACAAATGATATCGACACT-AAACCCAAAATAATGAAGTAGTATCGATATTGTTGAGGAAGTACCG
1 ATATATGATATCGATACTGAAACCCAAAATAATGAAGCAGTATCGATACTACTGAGGAAGTACCG
* * *
71422 ATGA-TGTCAACACAAAATGCTAAAATGATA-CAAATACC
66 AT-ACTGTCAAAACAAAATGCTAAAATGGTATC-GATACC
* * *
71460 ATATATGATATCGATTCTAAAACCCAAAATATTGAAG
1 ATATATGATATCGATACTGAAACCCAAAATAATGAAG
71497 TTGTACAGAT
Statistics
Matches: 281, Mismatches: 58, Indels: 11
0.80 0.17 0.03
Matches are distributed among these distances:
101 1 0.00
102 87 0.31
103 192 0.68
104 1 0.00
ACGTcount: A:0.43, C:0.17, G:0.15, T:0.25
Consensus pattern (103 bp):
ATATATGATATCGATACTGAAACCCAAAATAATGAAGCAGTATCGATACTACTGAGGAAGTACCG
ATACTGTCAAAACAAAATGCTAAAATGGTATCGATACC
Found at i:71510 original size:205 final size:206
Alignment explanation
Indices: 71050--71523 Score: 585
Period size: 205 Copynumber: 2.3 Consensus size: 206
71040 ATCAGTATTG
*
71050 ATATAT-ATATCGATAT-TGAAATCCAAAATAATGAAGCAGTATTGATACTACTGAGGCAGTACC
1 ATATATGATATCGAT-TCTGAAATCCAAAATAATGAAGCAGTATTGATACTGCTGAGGCAGTACC
* * * * *
71113 GATACTCTCAAAACAAAATTCAAAAATGGTATCGATACCATATATGATATCGATACTGAAACCCA
65 GAAACTCTCAAAACAAAATGCAAAAATGGTATCGATACCACAAATGATATCGACACTGAAACCCA
* * *
71178 AAACAATGAAGTGGTACCAATACTGATAACGAAGTACCAATGCTGTCAAAACATAATACTAAAAT
130 AAACAATGAAGTAGTACCAATACTGATAACGAAGTACCAATGATGTCAAAACAAAATACTAAAAT
* **
71243 GGTACCGATACC
195 GATACAAATACC
* * *
71255 ATATATGATATCGATACTGAAATCCAAAATAATGAAGCAGTATTGATACTGCTGTGGCAGTACTG
1 ATATATGATATCGATTCTGAAATCCAAAATAATGAAGCAGTATTGATACTGCTGAGGCAGTACCG
* * *
71320 AAACTGTCAAAACAGAATGCTAAAATGGTATCGATACCACAAATGATATCGACACT-AAACCCAA
66 AAACTCTCAAAACAAAATGCAAAAATGGTATCGATACCACAAATGATATCGACACTGAAACCCAA
* * * * * * * * * *
71384 AATAATGAAGTAGTATCGATATTGTTGAGGAAGTACCGATGATGTCAACACAAAATGCTAAAATG
131 AACAATGAAGTAGTACCAATACTGATAACGAAGTACCAATGATGTCAAAACAAAATACTAAAATG
71449 ATACAAATACC
196 ATACAAATACC
* * * ** ** * *
71460 ATATATGATATCGATTCTAAAACCCAAAATATTGAAGTTGTACAGATACTGGTGAGGTAGTACC
1 ATATATGATATCGATTCTGAAATCCAAAATAATGAAGCAGTATTGATACTGCTGAGGCAGTACC
71524 AATAGTGTCA
Statistics
Matches: 227, Mismatches: 40, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
205 126 0.56
206 101 0.44
ACGTcount: A:0.42, C:0.17, G:0.16, T:0.25
Consensus pattern (206 bp):
ATATATGATATCGATTCTGAAATCCAAAATAATGAAGCAGTATTGATACTGCTGAGGCAGTACCG
AAACTCTCAAAACAAAATGCAAAAATGGTATCGATACCACAAATGATATCGACACTGAAACCCAA
AACAATGAAGTAGTACCAATACTGATAACGAAGTACCAATGATGTCAAAACAAAATACTAAAATG
ATACAAATACC
Found at i:72525 original size:20 final size:20
Alignment explanation
Indices: 72509--72553 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
72499 TAACAGTACT
*
72509 GATATTGTTAAATCAGTATA
1 GATACTGTTAAATCAGTATA
*
72529 GATACTGTTAAATCAGTATC
1 GATACTGTTAAATCAGTATA
72549 GATAC
1 GATAC
72554 ATATATCGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (20 bp):
GATACTGTTAAATCAGTATA
Found at i:72649 original size:86 final size:85
Alignment explanation
Indices: 72557--72736 Score: 243
Period size: 86 Copynumber: 2.1 Consensus size: 85
72547 TCGATACATA
* * * * * * *
72557 TATCGATATTGAAACCCAAAATAATGAAGTAGTACCGATATTGCTGAGGCAGTTACCGATACTCT
1 TATCGATACTGAAACCCAAAACAATGAAGTAGTACCAATAGTGATGAGGAAG-TACCAATACTCT
*
72622 CAAAACAGAATGCAAAAATGG
65 CAAAACAGAATACAAAAATGG
* *
72643 TATCGATACTGAAACCCAAAACAATGAAGTGGTACCAATAGTGATGAGGAAGTACCAATACTGTC
1 TATCGATACTGAAACCCAAAACAATGAAGTAGTACCAATAGTGATGAGGAAGTACCAATACTCTC
* *
72708 AAAACATAATACTAAAATGG
66 AAAACAGAATACAAAAATGG
72728 TATCGATAC
1 TATCGATAC
72737 CATATATGGT
Statistics
Matches: 82, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
85 37 0.45
86 45 0.55
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (85 bp):
TATCGATACTGAAACCCAAAACAATGAAGTAGTACCAATAGTGATGAGGAAGTACCAATACTCTC
AAAACAGAATACAAAAATGG
Found at i:72826 original size:103 final size:102
Alignment explanation
Indices: 72639--72919 Score: 339
Period size: 103 Copynumber: 2.7 Consensus size: 102
72629 GAATGCAAAA
* * * * **
72639 ATGGTATCGATACTGAAACCCAAAACAATGAAGTGGTACCAATAGTGATGAGGAAGTACCAATAC
1 ATGGTATCGATACTGAAACCCAAAATAATGAAGTAGTA-CAGTACTGATGAGGAAGTACTGATAC
* * *
72704 TGTCAAAACATAATACTAAAATGGTATCGATACCATAT
65 TGTCAAAACAGAATACTAAAATGGTACCAATACCATAT
* * * *
72742 ATGGTATCGATACTGAAATCCAAAATAATGAAGCAGTATCAGTACTGCTGAGAAAGTACTGATAC
1 ATGGTATCGATACTGAAACCCAAAATAATGAAGTAGTA-CAGTACTGATGAGGAAGTACTGATAC
* *
72807 TATCAAAACAGAATGCTAAAATGGTACCAATACCATAT
65 TGTCAAAACAGAATACTAAAATGGTACCAATACCATAT
* * * * *
72845 ATGTTATCGATACT-ATAACCCAAAATAATGAAGTAGTACCGATACTGGTTAGGCAGTACTGATA
1 ATGGTATCGATACTGA-AACCCAAAATAATGAAGTAGTACAG-TACTGATGAGGAAGTACTGATA
72909 CTGTCAAAACA
64 CTGTCAAAACA
72920 ACGGTCAAGC
Statistics
Matches: 151, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
102 3 0.02
103 148 0.98
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.25
Consensus pattern (102 bp):
ATGGTATCGATACTGAAACCCAAAATAATGAAGTAGTACAGTACTGATGAGGAAGTACTGATACT
GTCAAAACAGAATACTAAAATGGTACCAATACCATAT
Found at i:73668 original size:20 final size:20
Alignment explanation
Indices: 73654--73696 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
73644 GCAGTACTGG
73654 TACTGTTAAATCAGTATAGA
1 TACTGTTAAATCAGTATAGA
*
73674 TACTGTTAAATCAGTATTGA
1 TACTGTTAAATCAGTATAGA
73694 TAC
1 TAC
73697 ATATATCGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (20 bp):
TACTGTTAAATCAGTATAGA
Found at i:73819 original size:103 final size:103
Alignment explanation
Indices: 73699--73934 Score: 312
Period size: 103 Copynumber: 2.3 Consensus size: 103
73689 ATTGATACAT
* * * *
73699 ATATCGATATTGAAACCCAAAATAATGAAGCAGTATCGATACT-ACTGAGGTAGTACCAATACTC
1 ATATCGATACTGAAACCCAAAATAATGAAGCAGTACCAATACTGA-TGAGGAAGTACCAATACTC
* * *
73763 TCAAAACAAAATGCAAAAATGGTATCGATGCCATATATG
65 TCAAAACAAAATACAAAAATGGTACCGATACCATATATG
* ** * *
73802 ATATCGATACTGAAACCCAAAACAATGAAGTGGTGCCAATACTGATGAGGAAGTACCAATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGCAGTACCAATACTGATGAGGAAGTACCAATACTCT
* *
73867 CAAAACATAATACTAAAATGGTACCGATACCATATATG
66 CAAAACAAAATACAAAAATGGTACCGATACCATATATG
* *
73905 ATATCGATACTAAAATCCAAAATAATGAAG
1 ATATCGATACTGAAACCCAAAATAATGAAG
73935 AGGTAGTAGC
Statistics
Matches: 115, Mismatches: 17, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
103 114 0.99
104 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.23
Consensus pattern (103 bp):
ATATCGATACTGAAACCCAAAATAATGAAGCAGTACCAATACTGATGAGGAAGTACCAATACTCT
CAAAACAAAATACAAAAATGGTACCGATACCATATATG
Found at i:74011 original size:86 final size:86
Alignment explanation
Indices: 73860--74020 Score: 241
Period size: 86 Copynumber: 1.9 Consensus size: 86
73850 GGAAGTACCA
* * *
73860 ATACTGTCAAAACATAATACTAAAATGGTACCGATACCATATATGATATCGATACTAAAATCCAA
1 ATACTGTCAAAACAGAATACTAAAATGGTACCGATACCATAAATGATATCGATACTAAAACCCAA
73925 AATAATGAAGAGGTAGTAGCG
66 AATAATGAAGAGGTAGTAGCG
* * ** *
73946 ATACTGTCAAAACAGAATGCTAAAATGGTATCGATACCATAAATGATATCGATTGTGAAACCCAA
1 ATACTGTCAAAACAGAATACTAAAATGGTACCGATACCATAAATGATATCGATACTAAAACCCAA
*
74011 ACTAATGAAG
66 AATAATGAAG
74021 TAGTATCGAT
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
86 66 1.00
ACGTcount: A:0.45, C:0.16, G:0.16, T:0.24
Consensus pattern (86 bp):
ATACTGTCAAAACAGAATACTAAAATGGTACCGATACCATAAATGATATCGATACTAAAACCCAA
AATAATGAAGAGGTAGTAGCG
Found at i:74121 original size:102 final size:103
Alignment explanation
Indices: 73934--74164 Score: 306
Period size: 102 Copynumber: 2.3 Consensus size: 103
73924 AAATAATGAA
* * * * *
73934 GAGGTAGTAGCGATACTGTCAAAACAGAATGCTAAAATGGTATCGATACCATAAATGATATCGAT
1 GAGGAAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTACCAATACCATAAATGATATCGAC
** * *
73999 TGTGAAACCCAAACTAATGAAGTAGTATCGATACTGCC
66 ACTGAAACCCAAAATAATGAAGTAGTACCGATACTGCC
*
74037 GAGGAAGTACCGATACTGTCAAAACAGAATGCT-AAATGGTACCAATACCATATATGATATCGAC
1 GAGGAAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTACCAATACCATAAATGATATCGAC
*
74101 ACT-ATAACCCAAAATAATGAAGTAGTACCGATACTGCT
66 ACTGA-AACCCAAAATAATGAAGTAGTACCGATACTGCC
* *
74139 GAGGCAA-TATCGATACTTTCAAAACA
1 GAGG-AAGTACCGATACTGTCAAAACA
74165 ACAGTCAAGC
Statistics
Matches: 113, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
101 1 0.01
102 79 0.70
103 33 0.29
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.23
Consensus pattern (103 bp):
GAGGAAGTACCGATACTGTCAAAACAGAATGCTAAAATGGTACCAATACCATAAATGATATCGAC
ACTGAAACCCAAAATAATGAAGTAGTACCGATACTGCC
Found at i:75966 original size:31 final size:31
Alignment explanation
Indices: 75928--76176 Score: 437
Period size: 31 Copynumber: 8.0 Consensus size: 31
75918 CCCGAAGGAC
* * *
75928 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
*
75959 CAGTCCATATGTCCCGAAGGACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
*
75990 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
76021 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
76052 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
76083 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
76114 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
76145 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
76176 C
1 C
76177 CCTCGACCCT
Statistics
Matches: 210, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
31 209 1.00
32 1 0.00
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:76940 original size:21 final size:21
Alignment explanation
Indices: 76914--76959 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
76904 AATTCTGTCG
* *
76914 CTTGAAGGGGTATCGGTTCCC
1 CTTGAAGGGGTACCGATTCCC
*
76935 CTTGAATGGGTACCGATTCCC
1 CTTGAAGGGGTACCGATTCCC
76956 CTTG
1 CTTG
76960 CCCAGAACTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.15, C:0.26, G:0.28, T:0.30
Consensus pattern (21 bp):
CTTGAAGGGGTACCGATTCCC
Found at i:80325 original size:31 final size:31
Alignment explanation
Indices: 80287--80534 Score: 428
Period size: 31 Copynumber: 8.0 Consensus size: 31
80277 CCCGAAGGAC
* * *
80287 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
*
80318 CAGTCCATATGTCCCGAAGGACATAGGT-AA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
*
80348 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
80379 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
80410 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
80441 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
80472 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
80503 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
80534 C
1 C
80535 CCTCGACCCT
Statistics
Matches: 208, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
30 27 0.13
31 180 0.87
32 1 0.00
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.20
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:81299 original size:21 final size:21
Alignment explanation
Indices: 81273--81318 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
81263 AATTCTGTCG
* *
81273 CTTGAAGGGGTATCGGTTCCC
1 CTTGAAGGGGTACCGATTCCC
*
81294 CTTGAATGGGTACCGATTCCC
1 CTTGAAGGGGTACCGATTCCC
81315 CTTG
1 CTTG
81319 CCCAGAACTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.15, C:0.26, G:0.28, T:0.30
Consensus pattern (21 bp):
CTTGAAGGGGTACCGATTCCC
Found at i:82378 original size:103 final size:102
Alignment explanation
Indices: 82250--82593 Score: 440
Period size: 103 Copynumber: 3.3 Consensus size: 102
82240 ATCGATACAT
* ** *
82250 ATATCGATATTGAAA-CACAAAATAATGAAGTAGTATCGTTACTGCTGAGGCAGTACCGATACTG
1 ATATCGATACTGAAATC-CAAAATAATGAAGTAGTATCAATACTGCTGAGGAAGTACCGATACTG
* *
82314 TCAAAATATAATGCTAAAATGGTGTCGATACCATATATG
65 TCAAAATATAATGATAAAATGGT-ACGATACCATATATG
* * * *
82353 ATATCGATACTGGAATCCAAAATAATGAAGT-GATACCAATACTGATGAGGAAGTACCAATACTG
1 ATATCGATACTGAAATCCAAAATAATGAAGTAG-TATCAATACTGCTGAGGAAGTACCGATACTG
* * *
82417 TAAAAACATAATAATAAAATGGTACTGATACCATATATG
65 TCAAAATATAATGATAAAATGGTAC-GATACCATATATG
* *
82456 ATATCGATACTGAAATCCAAAATAATGAAGCAGTATCAATACTGCTGAGGTAGTACCGATACTGT
1 ATATCGATACTGAAATCCAAAATAATGAAGTAGTATCAATACTGCTGAGGAAGTACCGATACTGT
* * * *
82521 CAAAATAGAATGATAAAATGATACCGATACCACAAATG
66 CAAAATATAATGATAAAATGGTA-CGATACCATATATG
* *
82559 ATATCGATACTCAAACCCAAAATAATGAAGTAGTA
1 ATATCGATACTGAAATCCAAAATAATGAAGTAGTA
82594 CCGAAACTAT
Statistics
Matches: 207, Mismatches: 29, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
102 2 0.01
103 202 0.98
104 3 0.01
ACGTcount: A:0.43, C:0.15, G:0.16, T:0.25
Consensus pattern (102 bp):
ATATCGATACTGAAATCCAAAATAATGAAGTAGTATCAATACTGCTGAGGAAGTACCGATACTGT
CAAAATATAATGATAAAATGGTACGATACCATATATG
Found at i:83657 original size:20 final size:20
Alignment explanation
Indices: 83634--83678 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
83624 ATTTCTATAA
*
83634 CAGTACCGATACTGTTAAAT
1 CAGTACAGATACTGTTAAAT
*
83654 CAGTATAGATACTGTTAAAT
1 CAGTACAGATACTGTTAAAT
83674 CAGTA
1 CAGTA
83679 TCAATACATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31
Consensus pattern (20 bp):
CAGTACAGATACTGTTAAAT
Found at i:83685 original size:20 final size:20
Alignment explanation
Indices: 83641--83679 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
83631 TAACAGTACC
83641 GATACTGTTAAATCAGTATA
1 GATACTGTTAAATCAGTATA
83661 GATACTGTTAAATCAGTAT
1 GATACTGTTAAATCAGTAT
83680 CAATACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (20 bp):
GATACTGTTAAATCAGTATA
Found at i:83833 original size:103 final size:103
Alignment explanation
Indices: 83691--84033 Score: 416
Period size: 103 Copynumber: 3.3 Consensus size: 103
83681 AATACATATT
* * * * * *
83691 TCGATATTGAAACACAAAATAATGAAGCAGTATCGATACTGCTGAGGCAGTACCGATACTGTCAA
1 TCGATACTGAAACCCAAAATAATGAAGTAGTACCAATACTGCTGAGGAAGTACCGATACTGTCAA
*
83756 AATATAATGCTAAAATGGTGTCGATACCATATATGATA
66 AATATAATGCTAAAATGGTATCGATACCATATATGATA
* * * * *
83794 TCGATACTGGAACCCAAAACAATGAAGTGGTACCAATACTGATGAGGAAGTACCAATACTGTCAA
1 TCGATACTGAAACCCAAAATAATGAAGTAGTACCAATACTGCTGAGGAAGTACCGATACTGTCAA
* * * *
83859 AACATAATACTAAAATGGTATTGATACCATATATGGTA
66 AATATAATGCTAAAATGGTATCGATACCATATATGATA
* * * * * *
83897 TCGATACTGAAATCCAAAATAATGAAGCAGTATCAATACTACTGAGGTAGTATCGATACTGTCAA
1 TCGATACTGAAACCCAAAATAATGAAGTAGTACCAATACTGCTGAGGAAGTACCGATACTGTCAA
* * * * * * *
83962 AATAGAATGTTAAAATGATACCGATACCACAAATGACA
66 AATATAATGCTAAAATGGTATCGATACCATATATGATA
*
84000 TCGATACTCAAACCCAAAATAATGAAGTAGTACC
1 TCGATACTGAAACCCAAAATAATGAAGTAGTACC
84034 GAAACTATCA
Statistics
Matches: 198, Mismatches: 42, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
103 198 1.00
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.24
Consensus pattern (103 bp):
TCGATACTGAAACCCAAAATAATGAAGTAGTACCAATACTGCTGAGGAAGTACCGATACTGTCAA
AATATAATGCTAAAATGGTATCGATACCATATATGATA
Found at i:87098 original size:17 final size:18
Alignment explanation
Indices: 87073--87106 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
87063 TATATTATAA
*
87073 AAAATATTGAATTAAATT
1 AAAATATTGAAATAAATT
87091 AAAA-ATTGAAATAAAT
1 AAAATATTGAAATAAAT
87107 AAGGGCTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (18 bp):
AAAATATTGAAATAAATT
Found at i:90453 original size:2 final size:2
Alignment explanation
Indices: 90446--90487 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
90436 TGAATTTGAG
*
90446 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
90487 T
1 T
90488 TATGAATAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:92783 original size:20 final size:19
Alignment explanation
Indices: 92736--92783 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
92726 AAAATTTTTG
* *
92736 TACCGATACTGCTATACAG
1 TACCGATACTGCTAAACAA
92755 TACCGATACTGCTAAAACAA
1 TACCGATACTGCT-AAACAA
*
92775 TATCGATAC
1 TACCGATAC
92784 GTATATCGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (19 bp):
TACCGATACTGCTAAACAA
Found at i:92924 original size:103 final size:102
Alignment explanation
Indices: 92786--93268 Score: 557
Period size: 103 Copynumber: 4.7 Consensus size: 102
92776 ATCGATACGT
* * * * *
92786 ATATCGATACTGAAACCCAAAATAATGAAGCAGTACCGATATTGCAGAGACAATACCGATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGCTGAGA-AGTACCAATACTGT
* *
92851 CAAAACAATATACTAAAATAGTATCGATACCATATATG
65 CAAAACAATATGCTAAAATGGTATCGATACCATATATG
* *
92889 ATATCGATACTGAAACCCAAAATAATAAAGTAGTACCGATACTGATGAGGAAGTACCAATACTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGCTGA-GAAGTACCAATACTGT
* *
92954 CAAAACAGA-ATGCTAGAATGGTGTCGAATACCATATATG
65 CAAAACA-ATATGCTAAAATGGTATCG-ATACCATATATG
* * * * * * *
92993 ATATCGATATTGAAACCTAAAATAATGAAGCAGTATCGATACTGCTGAGGCAGCACCAATACTAT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGCTGA-GAAGTACCAATACTGT
*
93058 CAAAAC-ATAATGCTAAAATGGTATCGATATCATATATG
65 CAAAACAAT-ATGCTAAAATGGTATCGATACCATATATG
* * * *
93096 ACATCGATACTGAAACCCAAAATAAT---GTAGTATCGATACTGCTGAGGAAGTACCTATATTGT
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGCTGA-GAAGTACCAATACTGT
* *
93158 CAAAACAAAATGCTAAAATGGTA-CAAATACCATATATG
65 CAAAACAATATGCTAAAATGGTATC-GATACCATATATG
* ** * *
93196 ATATCGGTGTTGAAACCCAAAATAATGAAGTAGTACCGATACTGCTGAGGTAA-TACCGATAATG
1 ATATCGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGCTGA-G-AAGTACCAATACTG
93260 TCAAAACAA
64 TCAAAACAA
93269 CGGTCAAGCC
Statistics
Matches: 327, Mismatches: 42, Indels: 22
0.84 0.11 0.06
Matches are distributed among these distances:
99 1 0.00
100 83 0.25
101 1 0.00
102 1 0.00
103 147 0.45
104 94 0.29
ACGTcount: A:0.43, C:0.17, G:0.16, T:0.24
Consensus pattern (102 bp):
ATATCGATACTGAAACCCAAAATAATGAAGTAGTACCGATACTGCTGAGAAGTACCAATACTGTC
AAAACAATATGCTAAAATGGTATCGATACCATATATG
Found at i:92929 original size:50 final size:50
Alignment explanation
Indices: 92786--92930 Score: 130
Period size: 50 Copynumber: 2.8 Consensus size: 50
92776 ATCGATACGT
* * *
92786 ATATCGATACTGAAACCCAAAATAATGAAGCAGTACCGATATTGCAGAGACA
1 ATATCGATACTGAAACCCAAAATAATAAAGTAGTACCGATA--CCAGAGACA
* * * * * * * * **
92838 ATACCGATACTGTCAAA-ACAATATACTAAAATAGTATCGATACCATATATG
1 ATATCGATACTG--AAACCCAAAATAATAAAGTAGTACCGATACCAGAGACA
92889 ATATCGATACTGAAACCCAAAATAATAAAGTAGTACCGATAC
1 ATATCGATACTGAAACCCAAAATAATAAAGTAGTACCGATAC
92931 TGATGAGGAA
Statistics
Matches: 71, Mismatches: 19, Indels: 8
0.72 0.19 0.08
Matches are distributed among these distances:
49 3 0.04
50 21 0.30
51 15 0.21
52 11 0.15
53 18 0.25
54 3 0.04
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.23
Consensus pattern (50 bp):
ATATCGATACTGAAACCCAAAATAATAAAGTAGTACCGATACCAGAGACA
Found at i:94160 original size:19 final size:19
Alignment explanation
Indices: 94113--94150 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
94103 TTATAAATAA
94113 CAGACAATTTTATTCATTT
1 CAGACAATTTTATTCATTT
94132 CAGACAATTTTATTCATTT
1 CAGACAATTTTATTCATTT
94151 TAGATTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.05, T:0.47
Consensus pattern (19 bp):
CAGACAATTTTATTCATTT
Found at i:95417 original size:58 final size:58
Alignment explanation
Indices: 95349--95475 Score: 177
Period size: 58 Copynumber: 2.2 Consensus size: 58
95339 GTTTGAAAAC
* * **
95349 TTTA-GGGCAAAACATCTTAAAAGTATTTTAGGGAG-TTATTCGGAAAAAATTGTATAG
1 TTTAGGGGCAAAACATCTTAAAAGTAATTTAGGGAGCAT-TTCGGAAAAAAGAGTATAG
* *
95406 TTTAGGGGCAAAACATCTTGAAAGTAATTTAGGGAGCATTTCGGTAAAAAGAGTATAG
1 TTTAGGGGCAAAACATCTTAAAAGTAATTTAGGGAGCATTTCGGAAAAAAGAGTATAG
95464 TTTAGGGGCAAA
1 TTTAGGGGCAAA
95476 TCTACATTTA
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
57 4 0.06
58 57 0.92
59 1 0.02
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (58 bp):
TTTAGGGGCAAAACATCTTAAAAGTAATTTAGGGAGCATTTCGGAAAAAAGAGTATAG
Found at i:96196 original size:3 final size:3
Alignment explanation
Indices: 96190--96219 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
96180 CAAGGGGCAT
*
96190 TAA TAA TAA TAA TAA CAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
96220 AGGATGGGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:105178 original size:20 final size:21
Alignment explanation
Indices: 105147--105185 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
105137 TACAGTCGTT
*
105147 TTAAACCTAAAATGTTATATG
1 TTAAACCTAAAAAGTTATATG
105168 TTAAA-CTAAAAAGTTATA
1 TTAAACCTAAAAAGTTATA
105186 CAAATTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.36
Consensus pattern (21 bp):
TTAAACCTAAAAAGTTATATG
Found at i:111713 original size:29 final size:27
Alignment explanation
Indices: 111679--111737 Score: 100
Period size: 29 Copynumber: 2.1 Consensus size: 27
111669 TTCAGGAATA
111679 TGAGGAGGATTTGGAGGTGGGAATTAGGT
1 TGAGGAGGATTTGGAGGT-GG-ATTAGGT
111708 TGAGGAGGATTTGGAGGTGGATTAGGT
1 TGAGGAGGATTTGGAGGTGGATTAGGT
111735 TGA
1 TGA
111738 CGGTTTGAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 10 0.33
28 2 0.07
29 18 0.60
ACGTcount: A:0.24, C:0.00, G:0.47, T:0.29
Consensus pattern (27 bp):
TGAGGAGGATTTGGAGGTGGATTAGGT
Done.