Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006240.1 Hibiscus syriacus cultivar Beakdansim tig00014868_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79291

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1776--1822
20
2.3
20
82
7
60
46
2
2
48
1.25
11083--11128
19
2.4
19
96
0
83
15
26
6
52
1.67
16475--16596
32
3.8
32
78
9
108
27
30
26
16
1.97
23620--23708
29
3.0
29
74
8
81
37
16
5
40
1.73
24999--25028
15
2.0
15
100
0
60
26
13
26
33
1.93
30453--30759
65
4.7
65
85
1
373
29
14
23
33
1.94
30979--31057
18
4.5
18
81
10
101
67
6
12
13
1.41
36244--36271
2
14.0
2
100
0
56
50
0
0
50
1.00
40858--40921
31
2.1
31
96
0
119
9
12
40
37
1.75
61003--61079
32
2.4
32
84
0
91
15
12
28
42
1.84
63624--63674
20
2.5
21
90
6
86
23
27
23
25
2.00
64245--64479
43
5.4
43
72
14
135
24
17
5
53
1.64
64244--64410
89
1.9
89
82
7
214
25
14
5
54
1.62
64363--64537
43
4.1
43
80
10
173
22
21
6
49
1.72
64407--64535
41
3.1
40
81
10
152
23
22
6
48
1.73
64363--64622
43
6.0
44
74
12
148
24
20
6
48
1.74
64407--64568
84
1.9
84
81
6
193
25
20
7
46
1.76
75685--75739
12
4.6
12
80
6
58
76
0
3
20
0.94
75686--75733
17
2.7
18
74
9
53
77
0
4
18
0.93
75794--76081
35
8.3
35
80
5
307
42
12
3
42
1.58

Tables:   1

The End!