genome.fa.s6242.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006242.1 Hibiscus syriacus cultivar Beakdansim tig00014879_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78523

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3711--3759	22	2.2	22	88	0	71	34	18	24	22	1.96
5844--6061	103	2.1	103	96	0	400	25	11	24	38	1.89
6078--6140	23	2.7	23	85	0	81	20	25	26	26	1.99
12213--12250	20	1.9	20	88	0	58	23	34	31	10	1.89
12732--12951	103	2.1	104	95	1	397	24	12	25	38	1.90
12968--13030	23	2.7	23	87	4	92	20	26	26	25	1.99
16757--16789	6	5.5	6	100	0	66	36	15	18	30	1.91
17169--17194	5	5.2	5	100	0	52	23	57	19	0	1.40
17375--17461	26	3.0	28	78	19	106	45	27	6	19	1.75
17537--17588	27	1.9	27	92	0	86	50	25	5	19	1.69
17536--17599	27	2.4	27	83	0	83	46	29	6	17	1.72
26764--26849	33	2.5	35	90	3	131	38	13	15	32	1.87
27586--27641	15	3.6	15	79	9	67	42	12	12	32	1.80
27589--27639	17	3.1	17	77	11	61	43	11	9	35	1.75
27810--27862	21	2.5	21	93	0	88	28	28	22	20	1.99
28058--28112	13	4.2	13	75	13	58	49	12	3	34	1.59
28098--28196	33	3.0	33	92	1	164	45	14	7	33	1.71
28191--28230	21	1.9	21	94	0	71	47	2	15	35	1.58
30509--30540	16	2.0	16	93	0	55	3	25	25	46	1.67
34884--34922	20	1.9	21	85	15	55	38	0	25	35	1.56
34966--35003	20	2.0	20	89	5	60	36	2	34	26	1.71
35086--35208	63	2.0	63	85	0	165	37	18	20	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35779--35831	18	2.9	18	77	0	52	18	15	32	33	1.92
39463--39831	54	6.8	54	86	1	499	33	17	18	31	1.94
40164--40222	22	2.9	21	90	7	86	32	18	15	33	1.92
41647--41845	42	4.7	42	76	9	149	25	15	4	54	1.58
41648--42168	43	12.0	43	74	12	277	26	18	6	48	1.71
41915--42162	87	2.9	86	82	8	297	25	20	6	47	1.74
41854--42144	130	2.2	129	83	8	367	26	20	7	45	1.78
41844--42179	43	7.8	43	77	9	292	26	19	7	46	1.76
41854--42185	87	3.8	86	76	12	261	26	19	7	46	1.76
42712--42767	21	2.7	19	79	15	67	21	19	23	35	1.96
42853--42888	10	3.3	11	92	7	56	27	55	16	0	1.42
42857--42891	5	6.6	5	96	3	52	25	54	20	0	1.45
42921--42987	21	3.2	21	95	0	116	22	22	28	26	1.99
44155--44180	2	13.0	2	100	0	52	50	0	0	50	1.00
45984--46141	21	7.8	20	72	7	86	38	25	17	18	1.92
46108--46357	20	12.5	20	81	6	229	37	24	17	20	1.93
47036--47082	24	2.0	24	87	8	69	25	14	21	38	1.92
49590--49705	19	6.6	19	77	19	128	13	22	18	45	1.84
49590--49705	51	2.2	52	93	3	198	13	22	18	45	1.84
49764--49925	33	4.7	33	75	16	159	45	17	22	14	1.85
49764--49931	19	9.6	19	76	18	177	44	17	23	14	1.86
49764--49931	52	3.2	52	97	0	309	44	17	23	14	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49938--50037	19	5.5	19	81	12	129	15	22	18	45	1.85
49921--50037	53	2.2	53	92	1	191	14	23	17	43	1.87
50144--50180	14	2.6	14	91	0	65	45	21	0	32	1.52
52096--52195	19	5.9	18	69	27	67	9	19	24	48	1.77
52098--52193	33	2.9	34	90	4	151	9	19	25	45	1.80
52132--52211	19	4.4	19	74	19	73	10	17	27	45	1.80
52250--52630	93	4.1	93	98	0	744	45	18	12	22	1.83
54333--54422	14	5.7	14	74	23	81	42	23	25	8	1.83
54325--54439	33	3.5	33	95	0	212	45	20	24	9	1.81
54332--54444	19	6.8	18	72	23	88	43	22	24	9	1.83
54456--54512	14	3.7	14	75	20	60	8	24	22	43	1.81
54440--54520	33	2.5	33	93	0	135	8	22	23	45	1.79
54497--54572	21	3.7	21	85	3	109	10	25	18	46	1.81
54496--54573	41	1.9	41	94	0	138	11	25	17	44	1.83
54652--54722	33	2.2	33	89	0	106	47	16	23	11	1.79
54904--54958	22	2.5	22	81	0	74	20	16	40	23	1.91
55081--55198	40	3.0	40	85	3	114	22	16	22	37	1.94
55103--55296	20	9.7	20	84	2	210	18	19	24	37	1.94
55283--55365	21	4.0	21	73	6	78	25	16	24	33	1.96
55263--55361	42	2.4	43	77	11	100	21	18	23	37	1.94
55517--55561	19	2.3	19	78	17	56	80	0	6	13	0.91
55578--55602	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55813--55841	2	14.5	2	100	0	58	51	0	0	48	1.00
55938--55966	2	14.5	2	100	0	58	51	0	0	48	1.00
57431--58158	106	6.9	106	94	0	1255	22	17	25	34	1.96
58907--58955	23	2.1	23	85	7	64	0	16	2	81	0.78
58907--58952	18	2.5	19	82	13	60	0	17	2	80	0.81
58907--58955	24	2.1	24	88	3	73	0	16	2	81	0.78
58907--58955	11	4.3	11	80	10	53	0	16	2	81	0.78
59000--59044	8	5.6	8	83	0	63	0	6	11	82	0.84
58992--59044	16	3.3	17	85	15	69	0	9	9	81	0.89
65754--65831	39	2.0	39	89	0	120	19	21	28	30	1.97
66174--66216	22	1.9	21	90	9	59	74	4	9	11	1.20
69494--69520	2	13.5	2	100	0	54	51	0	0	48	1.00
69836--69902	9	7.0	10	82	16	56	64	1	0	34	1.03
69856--69902	3	15.7	3	91	8	78	65	0	0	34	0.93
77123--77187	27	2.5	26	85	9	87	44	1	0	53	1.09
77118--77191	27	2.6	27	76	22	71	43	1	0	55	1.08
77138--77192	27	2.1	27	93	3	94	41	0	0	58	0.98
77578--77646	26	2.7	25	77	14	61	59	1	2	36	1.21
78155--78220	31	2.2	30	94	2	114	53	19	7	19	1.69

Tables:   1

The End!