genome.fa.s6244.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006244.1 Hibiscus syriacus cultivar Beakdansim tig00014886_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57665

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5155--5323	54	3.1	53	85	5	162	25	18	20	35	1.95
5194--5492	54	5.5	54	89	3	343	27	18	21	33	1.96
11410--11468	25	2.4	25	94	2	102	49	10	18	22	1.77
16087--16126	21	1.9	21	89	0	62	25	40	25	10	1.86
16817--16856	21	1.9	21	84	0	53	37	30	0	32	1.58
20808--21171	54	6.6	53	80	11	279	29	15	21	33	1.94
20883--21111	116	2.0	114	85	3	307	28	14	22	34	1.94
23934--23978	21	2.1	21	87	0	63	31	28	24	15	1.96
25802--25846	23	2.0	23	86	0	63	20	26	26	26	1.99
29285--29335	26	2.0	26	84	0	66	29	5	7	56	1.51
30539--30596	21	2.8	20	79	10	64	17	3	1	77	0.99
32297--32321	11	2.3	11	100	0	50	24	0	0	76	0.80
34684--34879	95	2.1	94	88	3	295	32	17	18	31	1.94
36198--36277	42	1.9	41	92	2	133	23	20	11	45	1.83
36320--36521	36	5.4	36	80	9	201	25	20	11	42	1.86
36436--36505	21	3.6	21	67	21	62	27	20	12	40	1.88
36185--36695	216	2.4	209	85	8	722	26	19	12	41	1.87
36534--36695	36	4.5	36	86	4	218	24	20	14	40	1.90
36415--36839	174	2.4	173	95	1	760	25	20	13	40	1.89
36534--36858	73	4.6	73	77	8	271	24	21	14	40	1.90
36592--36839	138	1.8	136	89	3	390	25	20	14	39	1.90
36608--36797	102	1.9	102	88	2	292	26	19	13	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36710--36868	37	4.4	36	81	3	176	23	23	14	37	1.92
36854--36941	36	2.5	35	89	8	128	40	20	10	28	1.85
36938--37383	80	5.5	83	79	6	414	30	25	19	24	1.98
37318--37432	55	2.1	55	88	0	167	31	20	19	29	1.97
37662--37700	9	4.2	9	83	3	51	28	0	0	71	0.86
37647--37694	18	2.7	18	83	3	62	33	0	2	64	1.05
39212--39248	8	4.5	8	96	3	65	10	0	0	89	0.49
39211--39252	16	2.7	16	82	17	61	14	0	0	85	0.59
39212--39263	25	2.1	25	85	7	70	17	0	0	82	0.66
40838--40880	20	2.2	20	83	8	52	55	0	0	44	0.99
47386--47430	19	2.2	21	88	7	67	20	0	17	62	1.33
47957--48022	27	2.4	28	80	7	82	12	34	21	31	1.90
52762--52809	23	2.1	23	84	0	60	39	6	16	37	1.74
52725--52887	87	1.9	87	94	0	290	41	11	14	33	1.81
52882--53606	199	3.6	197	82	7	878	30	14	14	40	1.86

Tables:   1

The End!