Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006245.1 Hibiscus syriacus cultivar Beakdansim tig00014887_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131671

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6267--6296
13
2.3
13
100
0
60
63
0
23
13
1.29
11539--11587
18
2.5
20
93
6
84
40
4
30
24
1.74
16729--16784
21
2.7
21
91
0
94
25
23
19
32
1.98
28316--28360
21
2.1
21
87
0
63
31
28
24
15
1.96
29159--29312
31
5.0
31
93
1
256
22
20
20
37
1.95
32277--32321
21
2.1
21
87
0
63
31
28
24
15
1.96
33122--33275
31
5.0
31
93
1
256
22
20
20
37
1.95
36625--36676
22
2.4
22
80
0
59
38
15
23
23
1.92
41276--41316
21
2.0
21
90
0
64
21
31
24
21
1.98
45322--45393
30
2.4
30
95
0
126
13
25
29
31
1.94
46509--46595
14
6.2
14
71
10
61
39
6
5
48
1.54
46509--46606
28
3.5
27
78
8
81
38
6
6
48
1.53
46509--46615
42
2.5
42
93
3
180
41
5
5
47
1.50
49041--49103
32
2.0
31
84
3
81
44
11
6
38
1.66
49536--49600
31
2.2
29
82
15
73
21
47
18
12
1.81
50200--50244
21
2.1
21
87
0
63
42
0
0
57
0.98
50200--50251
21
2.5
20
75
12
50
46
0
0
53
1.00
50348--50396
18
2.7
18
81
9
64
65
8
4
22
1.37
51764--51793
15
2.0
15
93
0
51
33
20
16
30
1.94
57422--57497
22
3.5
22
94
0
116
19
34
26
19
1.96
57493--57539
22
2.1
22
88
0
67
23
36
29
10
1.89
57503--57566
22
2.9
22
88
2
92
18
37
31
12
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60535--60582
19
2.5
19
100
0
96
31
22
29
16
1.96
66360--66446
38
2.3
38
91
0
147
31
3
16
49
1.62
72941--73067
3
43.0
3
87
3
186
63
0
2
33
1.07
73320--74126
119
6.9
119
94
2
1348
28
20
13
37
1.90
74755--75323
52
10.9
53
94
1
906
40
22
14
23
1.90
76303--76368
6
11.7
6
74
19
54
0
16
0
83
0.65
76300--76365
14
4.6
14
78
17
73
0
18
0
81
0.68
76299--76371
29
2.6
29
81
16
91
0
19
0
80
0.71
76305--76372
26
2.7
26
82
11
88
0
19
0
80
0.70
76311--76371
19
3.3
18
80
14
63
0
18
0
81
0.68
76311--76371
10
6.2
10
75
11
63
0
18
0
81
0.68
76304--76371
20
3.6
19
81
14
70
0
17
0
82
0.67
76301--76371
15
4.7
15
71
10
63
0
16
0
83
0.66
87635--87683
19
2.4
19
83
10
53
57
4
2
36
1.30
89079--89221
3
48.0
3
88
1
207
64
0
2
33
1.05
96483--96541
31
1.9
31
92
0
100
40
6
10
42
1.65
96556--96618
32
2.0
32
100
0
126
53
11
0
34
1.36
96598--96640
22
2.0
22
100
0
86
51
13
0
34
1.42
96566--96685
54
2.2
54
95
0
213
51
10
0
38
1.35
96600--96648
22
2.2
22
88
3
71
55
14
0
30
1.40
96671--96754
15
6.0
15
80
16
108
52
0
0
47
1.00
96642--96737
39
2.6
36
88
8
131
53
1
0
45
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108931--108964
18
1.9
18
88
5
52
26
32
26
14
1.95
109241--109321
40
2.0
40
100
0
162
38
12
22
27
1.90
117211--117238
3
9.3
3
100
0
56
67
32
0
0
0.91
122757--122794
20
2.0
19
90
10
60
47
10
23
18
1.79
122756--122800
20
2.6
16
80
19
54
44
11
22
22
1.84

Tables:   1

The End!