genome.fa.s6246.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006246.1 Hibiscus syriacus cultivar Beakdansim tig00014889_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91082

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10533--10559	13	2.1	13	100	0	54	55	22	0	22	1.44
12310--12370	21	3.2	21	65	29	64	31	4	21	42	1.74
12302--12420	35	3.3	37	88	8	174	31	5	19	43	1.72
16906--16966	21	3.2	20	65	29	53	31	3	21	44	1.68
16898--17016	35	3.3	37	84	8	156	31	4	19	44	1.70
21422--21506	37	2.3	37	93	0	152	17	25	8	48	1.75
33507--33556	22	2.3	22	96	0	91	24	24	24	28	2.00
33681--33758	39	2.0	40	94	2	140	19	15	16	48	1.81
33910--33971	20	3.1	19	80	19	72	38	1	1	58	1.18
36771--36800	2	15.0	2	92	0	51	0	46	0	53	1.00
36800--36840	2	20.5	2	100	0	82	48	0	0	51	1.00
46438--46511	21	3.6	21	72	3	78	22	17	24	35	1.95
46437--46657	41	5.4	41	89	4	297	18	19	23	38	1.93
46523--46593	21	3.4	21	70	18	76	15	21	26	36	1.93
46725--46776	6	8.7	6	91	0	86	34	46	17	1	1.59
47287--47319	6	5.5	6	100	0	66	0	15	51	33	1.43
47316--47376	6	10.2	6	100	0	122	32	0	32	34	1.58
47287--47325	18	2.2	18	90	0	60	5	12	48	33	1.63
47463--47510	19	2.5	19	100	0	96	41	18	20	18	1.90
47501--47569	21	3.3	21	67	18	63	37	27	18	15	1.92
47495--47784	41	6.9	41	75	11	246	36	24	20	18	1.95
47542--47612	21	3.4	21	69	18	67	35	25	19	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47560--47833	62	4.3	62	77	10	275	35	24	19	20	1.96
47583--47723	69	2.0	70	90	2	221	34	24	18	21	1.96
47694--47763	20	3.5	20	70	18	72	40	24	22	12	1.89
47714--47805	21	4.4	21	78	13	118	35	27	20	16	1.94
47692--47833	21	6.9	21	71	17	77	35	26	20	17	1.95
48820--48879	30	2.0	30	100	0	120	26	16	13	43	1.85
52101--52411	53	5.9	53	82	2	299	24	25	19	30	1.98
52163--52412	106	2.4	103	86	4	331	23	26	20	30	1.98
53014--53075	20	3.0	21	68	17	65	30	24	19	25	1.98
52816--53204	164	2.4	164	87	3	570	30	20	19	29	1.97
53000--53417	122	3.4	121	92	1	701	29	20	20	29	1.98
52816--53325	42	12.5	42	68	13	258	29	20	19	30	1.97
52956--53419	42	11.4	42	68	14	238	30	20	19	29	1.97
60036--60070	8	4.1	8	86	13	52	88	0	11	0	0.51
60038--60070	10	3.5	10	84	16	52	90	0	9	0	0.44
60036--60070	18	1.9	18	100	0	70	88	0	11	0	0.51
64251--64284	13	2.6	13	100	0	68	55	5	8	29	1.54
70606--70631	2	13.0	2	100	0	52	50	0	0	50	1.00
73601--74114	257	2.0	257	100	0	1028	42	20	17	20	1.90
77918--78035	59	2.0	58	80	11	134	43	12	10	33	1.77
90343--90379	2	19.0	2	88	5	58	48	0	0	51	1.00
90693--90717	13	1.9	13	100	0	50	44	16	16	24	1.86

Tables:   1

The End!