genome.fa.s6248.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006248.1 Hibiscus syriacus cultivar Beakdansim tig00014891_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137724

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8948--9005	24	2.5	23	80	2	62	58	3	1	36	1.25
13665--13712	22	2.2	23	85	7	64	50	2	4	43	1.33
18503--18550	20	2.4	20	96	0	87	56	2	8	33	1.41
21838--21928	16	5.6	16	68	11	53	56	25	8	9	1.61
22218--22280	30	2.1	31	90	3	101	50	9	7	31	1.64
25107--25201	15	6.3	15	95	0	154	22	22	9	46	1.80
25107--25201	45	2.1	45	96	0	172	22	22	9	46	1.80
32858--32947	16	5.6	16	67	10	51	54	25	10	10	1.64
32919--33001	32	2.6	32	79	11	91	48	19	13	19	1.81
33236--33303	30	2.2	32	89	7	113	54	8	7	29	1.58
34715--34883	60	2.8	59	78	7	173	38	4	23	33	1.74
34965--35151	60	3.1	58	78	14	186	33	21	4	40	1.75
34976--35151	59	3.0	56	77	15	178	32	22	4	40	1.74
35279--35462	61	3.0	61	79	6	212	38	5	24	31	1.80
35279--35456	60	2.9	59	81	7	198	38	6	23	32	1.79
40255--40324	10	7.3	9	72	12	50	18	24	28	28	1.98
40272--40317	9	4.8	10	76	10	51	17	23	32	26	1.97
40272--40324	19	2.8	19	91	0	88	16	24	32	26	1.97
40318--40375	17	3.4	17	95	0	98	18	43	22	15	1.88
40365--40407	7	6.4	7	89	10	72	16	30	30	23	1.96
40365--40403	13	3.0	13	100	0	78	15	30	30	23	1.95
40365--40407	20	2.2	20	91	8	70	16	30	30	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41276--41399	63	2.0	63	82	6	153	16	28	29	25	1.97
47602--47696	10	9.6	10	77	10	97	18	23	30	27	1.98
47618--47696	39	2.0	40	87	7	117	16	22	32	27	1.96
47618--47696	20	4.0	19	87	8	113	16	22	32	27	1.96
47701--47754	17	3.2	17	100	0	108	18	48	22	11	1.79
47744--47773	7	4.4	7	91	8	53	16	30	30	23	1.96
47744--47769	13	2.0	13	100	0	52	15	30	30	23	1.95
48642--48718	31	2.5	31	78	2	82	14	25	31	28	1.95
49573--49610	17	2.2	18	86	9	53	26	39	0	34	1.57
55019--55096	40	2.0	40	92	0	129	48	39	0	11	1.39
55748--55843	45	2.2	42	82	14	106	43	5	4	46	1.45
57271--57427	72	2.2	72	93	4	264	29	24	22	23	1.99
57560--57765	72	2.9	72	90	2	310	28	25	22	23	1.99
58692--58766	10	7.8	10	75	14	68	54	22	18	4	1.60
58684--58772	19	4.7	19	90	0	133	52	24	19	3	1.61
58684--58772	4	22.0	4	69	26	55	52	24	19	3	1.61
58898--59005	10	10.1	10	76	13	99	60	17	9	12	1.58
58941--58971	14	2.2	14	94	0	53	58	25	12	3	1.50
59275--59319	14	3.1	14	93	6	72	53	15	15	15	1.74
59350--59429	40	1.9	41	90	7	126	36	13	11	38	1.81
78492--78544	26	2.1	25	82	10	63	41	0	7	50	1.30
82498--82524	13	2.1	13	100	0	54	22	0	14	62	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84252--84332	17	4.6	18	84	7	96	43	12	11	33	1.78
85776--85800	13	1.9	13	100	0	50	16	52	24	8	1.70
85800--85903	28	3.6	28	84	3	136	26	7	20	45	1.78
89976--90038	3	20.0	3	84	9	65	60	0	0	39	0.97
89976--90038	24	2.7	21	81	18	72	60	0	0	39	0.97
90166--90822	76	8.6	76	96	0	1197	33	20	22	22	1.97
90613--91009	199	2.0	200	97	0	760	32	20	22	23	1.98
90764--90869	47	2.3	47	91	0	185	28	19	25	26	1.99
90688--90945	123	2.1	123	96	0	489	31	21	23	23	1.98
90813--91009	76	2.6	76	96	0	358	32	20	22	23	1.98
91684--91763	22	3.6	22	72	0	79	40	12	12	35	1.81
91806--92143	169	2.0	169	98	0	658	33	19	15	31	1.93
92284--92395	54	2.1	54	89	0	170	22	23	16	38	1.93
94533--94963	114	3.8	114	95	0	729	33	21	13	30	1.92
94874--95052	93	1.9	92	88	3	270	36	20	13	29	1.91
97149--97180	16	2.1	15	94	5	55	0	21	0	78	0.76
103784--103838	2	28.5	2	89	7	87	50	0	0	49	1.00
103780--103844	10	5.6	12	84	14	75	53	0	0	46	1.00
103768--103855	22	4.4	20	84	13	87	52	0	0	47	1.00
114691--114733	20	2.2	20	83	8	52	41	4	0	53	1.21
115920--115972	26	2.1	25	82	10	63	41	0	7	50	1.30
117689--117714	4	6.5	4	100	0	52	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120019--120064	19	2.4	19	81	0	56	21	28	23	26	1.99
120089--120193	29	3.6	29	84	6	140	26	5	19	48	1.71
121780--121861	18	4.6	18	82	8	87	43	12	10	32	1.77
121774--121864	35	2.6	35	78	5	103	41	14	10	32	1.81
123353--123456	28	3.6	28	82	3	127	27	7	20	44	1.79

Tables:   1

The End!