genome.fa.s6249.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006249.1 Hibiscus syriacus cultivar Beakdansim tig00014894_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69479

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17439--17488	24	2.1	24	92	7	84	30	30	14	26	1.94
21739--21827	43	2.1	43	97	0	169	32	11	19	37	1.87
27661--27731	24	2.9	24	91	2	97	39	14	18	28	1.89
27676--27731	24	2.3	24	100	0	112	37	16	17	28	1.91
28678--28885	80	2.6	79	85	3	274	45	9	9	36	1.69
29117--29202	11	8.2	10	74	12	50	43	1	1	54	1.15
29117--29202	5	16.4	5	68	17	50	43	1	1	54	1.15
29117--29156	17	2.4	18	80	16	50	45	2	0	52	1.14
30064--30180	21	5.6	21	84	8	141	30	24	22	22	1.99
30203--30256	21	2.6	21	87	0	81	27	20	24	27	1.99
30972--31005	5	7.0	5	96	3	61	0	41	20	38	1.53
31008--31043	10	3.3	11	92	7	56	0	16	55	27	1.42
31069--31106	19	2.0	19	94	0	67	31	23	21	23	1.98
35140--35182	17	2.6	17	85	3	52	6	23	2	67	1.27
35670--35726	22	2.7	21	78	7	71	19	21	35	24	1.96
35688--35731	22	2.0	23	86	4	63	18	22	34	25	1.96
43419--43453	18	1.9	18	94	0	61	71	0	2	25	1.00
43416--43458	18	2.6	16	82	13	59	69	0	2	27	1.00
43665--43702	20	1.9	19	89	5	58	52	0	5	42	1.24
43760--43821	29	2.1	30	90	3	99	48	3	3	45	1.34
47770--47925	78	2.0	79	88	3	235	34	16	13	35	1.87
48910--49359	182	2.5	182	92	2	735	26	15	14	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49275--49323	20	2.5	20	86	0	71	14	16	16	53	1.74
52114--52545	199	2.2	199	91	0	677	27	14	16	41	1.87
52536--54334	199	9.1	198	94	1	3100	28	15	15	41	1.87
52114--54334	398	5.6	397	91	3	3594	27	15	15	41	1.87
52114--54334	597	3.8	597	92	2	3620	27	15	15	41	1.87
54677--54726	19	2.7	19	90	3	75	56	10	2	32	1.44
56193--56231	18	2.2	18	95	0	69	5	41	0	53	1.23
56901--56950	24	2.2	23	86	13	68	46	6	2	46	1.39
57912--57950	18	2.2	18	90	9	62	43	7	2	46	1.46
58019--58068	21	2.4	21	96	0	91	12	32	4	52	1.57
58222--58270	19	2.6	20	87	12	77	38	18	0	42	1.50
58653--59296	182	3.5	180	87	3	864	27	15	13	43	1.84
59501--59533	2	16.5	2	100	0	66	48	0	0	51	1.00
59811--59876	31	2.1	31	88	0	96	21	27	22	28	1.99
61879--61938	13	4.5	13	77	10	50	63	23	8	5	1.42
62186--62227	14	3.0	14	89	0	66	61	16	9	11	1.55
62504--62560	30	1.9	30	88	0	87	31	8	29	29	1.87

Tables:   1

The End!