genome.fa.s625.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000625.1 Hibiscus syriacus cultivar Beakdansim tig00001213_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57603

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1190--1269	15	5.1	16	74	14	78	83	2	12	1	0.80
1192--1271	5	16.2	5	76	14	53	82	2	13	1	0.83
1188--1279	39	2.4	39	80	8	100	82	2	14	1	0.82
1188--1298	28	4.0	27	71	24	63	81	2	13	2	0.92
2174--2221	12	3.9	12	76	15	53	41	6	0	52	1.27
2196--2222	13	2.1	13	100	0	54	37	7	0	55	1.28
2348--2432	45	1.9	45	87	2	127	32	15	18	32	1.92
5320--5434	34	3.4	34	95	2	205	33	9	17	40	1.82
5417--5592	65	2.7	65	84	6	212	37	12	21	28	1.90
5598--5907	66	4.6	64	80	10	350	40	12	19	27	1.87
5420--5806	167	2.3	168	84	5	512	39	12	19	27	1.88
5716--5935	36	6.2	37	74	12	201	39	13	19	28	1.89
5656--5925	139	1.9	139	97	0	513	41	13	19	25	1.88
7215--7439	94	2.6	85	77	17	262	31	21	19	28	1.97
7272--7452	94	1.9	95	89	3	285	28	20	19	31	1.97
10359--10402	21	2.2	19	84	8	52	70	0	11	18	1.16
12655--12736	42	2.0	42	90	0	128	28	20	17	34	1.95
12926--13816	267	3.3	266	85	2	1079	32	19	18	29	1.96
12896--13818	134	6.9	134	82	2	957	32	19	18	29	1.96
13728--13888	87	1.9	87	89	0	250	32	18	18	30	1.95
13592--14021	220	2.0	221	85	0	592	32	19	18	29	1.96
16041--16271	127	1.8	128	83	5	315	32	19	14	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19897--19941	2	22.5	2	100	0	90	48	0	0	51	1.00
21851--21894	2	22.0	2	100	0	88	50	0	0	50	1.00
24872--24915	22	2.0	22	82	8	54	31	0	6	61	1.22
24888--24975	19	4.9	19	66	27	59	34	0	2	63	1.07
24886--24945	31	1.9	30	87	12	86	38	0	1	60	1.07
24900--24968	20	3.2	21	80	15	79	36	0	1	62	1.04
24962--25018	21	2.7	21	80	2	60	24	1	5	68	1.20
27766--27816	23	2.2	24	86	6	70	64	1	1	31	1.15
28221--28277	26	2.1	27	84	9	73	26	1	5	66	1.22
31709--31742	17	2.0	17	88	11	52	8	26	0	64	1.22
36585--36635	15	3.5	15	78	10	70	11	31	7	49	1.68
36598--36640	13	3.1	14	74	12	52	13	27	6	51	1.67
36584--36640	28	2.0	28	100	0	114	14	28	7	50	1.68
37826--37910	16	5.3	16	88	0	125	20	27	12	40	1.89
38180--38226	14	3.7	14	71	26	50	44	0	4	51	1.21
38179--38227	23	2.1	24	96	3	91	46	0	4	48	1.20
38534--38570	15	2.4	15	95	4	65	40	2	5	51	1.39
38934--39003	14	5.1	14	77	5	63	21	0	28	50	1.49
38932--39003	20	3.5	20	70	9	56	23	0	27	48	1.51
39457--39522	21	3.2	20	76	8	69	21	0	25	53	1.46
39612--39681	2	34.0	2	91	5	113	47	1	1	50	1.19
40103--40197	49	2.0	49	87	2	138	34	7	7	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40190--40225	2	18.0	2	100	0	72	50	0	0	50	1.00
38313--40585	523	4.1	541	78	13	2524	36	9	12	42	1.74
39133--40225	591	1.9	586	93	2	1842	36	8	11	43	1.71
44082--44421	176	1.9	173	88	2	502	36	15	11	37	1.83
44687--44778	42	2.2	41	80	3	112	33	20	20	25	1.97
44943--45036	43	2.2	41	78	9	100	32	23	19	24	1.97
44258--45166	260	3.5	256	88	2	1279	34	16	14	34	1.89
55380--55464	5	18.2	5	70	20	60	77	0	21	1	0.83
55367--55462	9	10.6	8	77	16	66	77	0	20	2	0.88
55367--55464	14	7.2	13	76	15	83	76	0	21	2	0.89
55381--55461	18	4.4	18	76	16	76	77	0	20	1	0.83
57209--57598	131	2.9	135	82	4	454	33	21	15	30	1.94
57243--57598	134	2.7	133	83	4	434	33	20	15	30	1.93

Tables:   1

The End!