genome.fa.s6250.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006250.1 Hibiscus syriacus cultivar Beakdansim tig00014897_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70563

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102--149	21	2.3	20	82	10	60	52	14	25	8	1.69
682--816	51	2.7	50	80	4	157	17	31	28	21	1.96
1067--1285	108	2.0	110	87	4	318	35	7	10	46	1.66
9606--9664	23	2.5	23	81	15	68	40	0	16	42	1.49
13548--13661	20	5.7	20	80	6	104	32	24	18	24	1.97
13545--13661	61	1.9	61	83	0	153	34	23	17	23	1.96
14233--14344	19	6.1	19	79	12	126	12	23	19	44	1.84
14255--14319	33	2.0	33	93	0	112	10	24	23	41	1.86
16475--16541	21	3.2	21	66	6	55	23	35	20	19	1.95
16423--16541	42	2.8	42	81	5	107	22	36	18	22	1.95
17895--17929	14	2.6	14	90	4	54	28	0	25	45	1.54
17882--17930	14	3.7	14	76	10	50	26	0	22	51	1.49
18035--18123	32	2.7	33	89	1	126	44	20	21	13	1.85
18119--18269	19	8.7	19	64	21	80	15	21	20	41	1.90
18118--18249	33	4.1	31	84	10	183	15	21	19	42	1.89
18116--18248	66	2.0	66	95	0	239	17	21	19	41	1.90
20533--20557	12	2.1	12	100	0	50	0	28	0	72	0.86
20732--20778	24	2.0	24	91	0	76	36	21	17	25	1.94
21842--21899	20	2.9	20	97	0	107	37	24	22	15	1.93
21922--21995	19	4.5	16	83	16	66	13	20	18	47	1.82
21918--21985	19	3.8	19	87	12	101	13	22	17	47	1.82
22102--22138	14	2.6	14	86	0	56	48	21	0	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24004--24059	20	2.9	19	86	5	85	35	23	25	16	1.94
24059--24116	14	3.9	14	77	16	62	48	24	17	10	1.78
24043--24121	32	2.4	33	93	2	133	46	22	18	11	1.81
24144--24207	14	4.4	14	80	16	76	10	15	23	50	1.76
24133--24223	32	2.8	33	93	3	157	12	17	21	48	1.80
24208--24251	20	2.3	19	84	11	54	20	25	18	36	1.95
24744--24788	18	2.5	18	88	0	72	13	15	44	26	1.83
26108--26160	20	2.7	20	79	2	63	49	20	16	13	1.79
26395--26438	22	2.0	22	95	0	79	18	15	45	20	1.85
26626--26698	20	3.7	20	92	0	119	26	19	28	26	1.98
26612--26729	40	2.9	41	78	7	141	24	16	25	33	1.95
26609--26741	41	3.3	41	76	10	137	24	16	25	33	1.96
26733--26821	41	2.2	41	95	0	124	20	22	16	40	1.91
26734--26804	21	3.4	21	74	3	81	18	22	16	42	1.89
26755--26821	20	3.3	20	70	12	64	20	20	16	41	1.90
28399--28457	22	2.7	21	81	5	55	50	0	5	44	1.24
34294--34392	31	3.2	30	76	11	92	44	11	5	39	1.62
35410--35742	111	3.0	111	92	0	549	35	7	10	46	1.67
36314--36341	14	2.0	14	100	0	56	14	14	28	42	1.84
37613--37652	21	1.9	21	90	10	64	27	22	37	12	1.90
37746--37838	50	1.9	46	85	8	123	24	4	4	66	1.28
37769--37870	54	2.0	50	83	11	125	25	5	5	62	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60299--60341	20	2.2	20	91	0	68	34	20	11	32	1.89
67505--67530	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1

The End!