genome.fa.s6251.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006251.1 Hibiscus syriacus cultivar Beakdansim tig00014898_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53319

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3645--3702	19	3.1	19	84	0	71	46	6	18	27	1.75
3655--3727	19	3.8	19	80	3	67	45	8	20	26	1.79
10963--11052	44	2.0	44	100	0	180	45	11	8	34	1.71
11269--11361	41	2.3	41	79	7	100	24	22	18	34	1.96
11207--11361	21	7.5	21	70	9	79	25	22	18	33	1.96
11351--11455	20	5.6	20	75	19	100	38	20	20	21	1.94
11361--11390	13	2.2	14	94	5	53	46	16	13	23	1.82
11662--11714	27	1.9	27	84	3	70	39	32	7	20	1.81
11963--12066	19	5.7	19	77	16	112	46	23	20	10	1.81
12062--12193	19	7.1	19	78	11	121	13	21	19	44	1.85
12067--12168	52	1.9	53	86	2	143	12	21	21	44	1.85
14338--14404	21	3.2	21	66	6	55	23	35	20	19	1.95
14286--14404	42	2.8	42	81	5	107	22	36	18	22	1.95
15758--15793	14	2.6	14	95	0	63	30	0	25	44	1.54
15900--15982	19	4.6	19	78	17	88	44	21	21	12	1.84
15979--16098	33	3.6	33	79	10	154	14	20	18	46	1.83
18341--18377	12	3.1	12	92	0	65	0	24	0	75	0.80
18345--18377	15	2.2	15	94	0	57	0	24	0	75	0.80
18552--18605	24	2.2	24	90	0	81	40	20	16	22	1.91
19429--19507	20	3.9	20	77	9	70	35	22	18	22	1.96
19823--19890	19	3.9	18	83	12	81	13	20	17	48	1.80
19827--19900	19	4.5	16	83	16	66	13	20	18	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21443--21533	42	2.2	41	84	5	121	24	16	38	20	1.93
21922--21967	20	2.3	20	92	0	74	15	23	26	34	1.94
22502--22549	18	2.7	18	93	0	87	14	12	45	27	1.81
23868--23926	20	3.0	20	87	0	73	44	22	18	15	1.87
24180--24223	22	2.0	22	100	0	88	18	13	45	22	1.84
24410--24502	20	4.7	20	84	0	114	25	17	27	29	1.97
24497--24544	21	2.3	21	100	0	96	22	22	16	37	1.94
24534--24586	21	2.5	20	76	8	61	35	18	24	20	1.95
24753--25402	183	3.6	182	87	2	876	47	11	14	26	1.78
25232--25568	161	2.1	162	84	2	428	45	10	13	29	1.77
26582--26717	36	3.8	36	90	1	211	15	29	32	22	1.95
31991--32312	162	2.0	160	93	1	554	39	28	6	25	1.81
32705--32740	14	2.5	15	90	4	56	66	0	11	22	1.22
33039--33081	18	2.4	18	84	0	59	69	0	9	20	1.15
35218--35256	18	2.2	18	85	0	51	7	25	30	35	1.84
36834--36923	23	4.1	21	73	9	81	21	25	26	26	1.99
36835--36917	22	3.8	22	77	4	87	20	24	28	26	1.99
40570--40621	21	2.5	21	96	0	95	23	15	9	51	1.72
40583--40628	21	2.2	21	88	0	65	19	15	13	52	1.75
43799--44367	270	2.1	270	89	3	869	26	17	21	34	1.95
44340--44581	123	2.0	123	83	1	306	26	12	21	39	1.89
45581--45671	25	3.6	25	67	14	62	21	8	12	57	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51526--51568	19	2.3	19	95	0	77	37	11	11	39	1.78
51754--51819	13	4.9	13	73	15	55	77	1	3	18	0.98
52014--52056	18	2.4	18	84	0	59	69	0	6	23	1.12

Tables:   1

The End!