genome.fa.s6252.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006252.1 Hibiscus syriacus cultivar Beakdansim tig00014922_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90477

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11362--11400	7	5.9	7	88	8	55	41	0	0	58	0.98
11362--11400	20	2.0	20	89	0	60	41	0	0	58	0.98
11472--11545	31	2.4	31	84	6	96	25	22	12	39	1.89
13517--13582	31	2.1	31	88	0	96	37	9	27	25	1.86
19532--19602	18	3.8	17	75	14	61	22	18	28	30	1.97
29843--29882	21	1.9	21	94	0	71	27	40	25	7	1.82
31839--31879	16	2.7	15	85	7	55	17	0	26	56	1.41
34911--34950	22	1.9	20	85	10	53	42	2	20	35	1.65
35218--35357	64	2.2	63	82	7	158	33	20	17	28	1.95
35928--35985	18	3.1	19	80	9	82	20	22	29	27	1.99
35928--35986	20	3.0	20	82	7	86	22	22	28	27	1.99
36236--36260	2	12.5	2	100	0	50	48	0	0	52	1.00
37897--37948	19	2.6	20	78	9	61	34	26	13	25	1.93
37982--38250	20	13.4	20	76	7	163	42	22	14	21	1.88
38025--38255	81	2.9	80	78	3	239	43	22	13	20	1.87
38032--38256	20	11.1	20	78	3	191	42	22	14	20	1.88
38013--38256	101	2.4	100	82	2	317	43	22	13	20	1.87
38359--38401	22	2.0	22	90	0	68	23	44	11	20	1.84
38762--38810	20	2.5	20	89	0	71	46	28	16	8	1.75
38819--38856	20	1.9	20	94	0	67	10	21	18	50	1.76
38837--38884	14	3.4	14	82	0	60	10	16	22	50	1.76
41062--41101	21	1.9	21	89	0	62	27	27	15	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41087--41157	21	3.4	21	84	7	74	22	33	22	21	1.97
42479--42654	66	2.6	66	88	7	248	28	2	17	51	1.57
42702--42816	20	5.7	21	88	4	141	42	20	19	17	1.89
43176--43211	18	2.0	18	94	0	63	16	2	25	55	1.55
45268--45318	24	2.1	24	81	0	57	37	17	19	25	1.94
45765--45877	19	5.9	19	88	2	156	32	10	20	36	1.87
45765--45891	38	3.3	39	86	5	159	30	11	19	37	1.88
45765--45877	58	2.0	58	85	5	158	32	10	20	36	1.87
45861--46068	20	10.4	20	77	6	188	19	15	23	41	1.89
45883--46068	40	4.7	40	80	5	232	18	15	24	41	1.89
45861--46068	60	3.5	60	82	7	269	19	15	23	41	1.89
46062--46104	20	2.2	20	91	0	68	20	16	23	39	1.92
45897--46088	60	3.2	59	84	5	269	19	15	23	41	1.89
45823--46068	40	6.2	41	78	7	231	21	14	23	41	1.90
47913--47973	32	1.9	32	96	0	113	52	18	4	24	1.65
48059--48327	68	4.0	68	83	7	363	47	11	13	28	1.77
48460--48496	14	2.6	14	91	0	56	10	18	48	21	1.78
49692--50016	137	2.4	137	83	1	382	35	26	15	22	1.94
50384--50426	3	13.3	3	81	13	50	37	0	2	60	1.10
50381--50426	13	3.8	13	83	11	62	36	0	2	60	1.09
50384--50426	16	2.7	16	85	0	59	37	0	2	60	1.10
55660--55692	2	16.5	2	100	0	66	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56631--56677	21	2.2	21	100	0	94	14	8	25	51	1.71
71135--71169	18	1.9	18	94	0	61	34	5	31	28	1.81
83065--83145	26	3.3	26	62	19	66	44	11	4	39	1.62
83053--83146	46	2.0	46	100	0	188	42	12	4	40	1.63
85582--85613	17	1.9	16	93	6	55	40	0	0	59	0.97

Tables:   1

The End!