genome.fa.s6253.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006253.1 Hibiscus syriacus cultivar Beakdansim tig00014923_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111122

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11636--11690	26	2.3	22	80	17	65	40	3	21	34	1.71
15566--15621	27	1.9	28	86	13	78	39	0	1	58	1.08
15571--15632	30	2.2	27	82	8	70	43	0	1	54	1.09
15877--15970	37	2.5	39	83	13	126	46	2	0	51	1.13
15877--15938	17	3.5	17	70	25	56	46	0	0	53	1.00
15880--15942	21	3.2	21	66	25	57	50	0	0	49	1.00
20484--20583	44	2.3	44	92	3	166	12	26	14	48	1.78
21283--21344	31	2.0	31	93	0	106	24	14	37	24	1.93
21349--21399	22	2.4	22	96	3	95	21	29	35	13	1.92
21446--21533	29	3.0	30	81	6	117	18	31	32	17	1.94
23285--23343	32	1.9	31	93	6	102	66	6	18	8	1.41
26498--26545	24	2.0	25	83	4	62	43	0	14	41	1.45
27142--27187	20	2.2	20	84	11	56	45	0	0	54	0.99
27521--27572	3	17.3	3	100	0	104	32	0	0	67	0.91
31059--31110	19	2.7	19	81	3	59	26	30	23	19	1.98
38061--38112	21	2.5	21	81	3	61	38	19	25	17	1.93
38098--38235	41	3.4	41	78	6	136	34	23	18	23	1.96
38101--38215	20	5.7	20	80	6	115	32	26	18	23	1.97
38369--38403	12	2.9	12	86	0	52	17	40	5	37	1.73
38957--39010	24	2.2	24	90	0	81	22	16	20	40	1.91
39185--39209	12	2.1	12	100	0	50	72	0	28	0	0.86
41474--41531	20	2.9	20	97	0	107	37	24	22	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41550--41614	19	3.7	19	86	13	95	13	21	18	46	1.84
41754--41790	14	2.6	14	86	0	56	48	21	0	29	1.50
43658--43711	20	2.7	20	88	0	81	37	22	24	16	1.94
43747--43805	14	3.9	14	72	20	55	50	23	15	10	1.74
43698--43810	33	3.4	33	92	0	190	50	22	15	11	1.76
43817--43899	19	4.6	19	79	14	104	14	19	20	45	1.85
43884--43927	20	2.2	20	84	4	54	20	22	20	36	1.95
43893--43938	20	2.3	20	88	0	65	15	21	26	36	1.93
44479--44526	18	2.7	18	93	0	87	14	12	45	27	1.81
45846--45911	20	3.3	20	82	0	78	45	19	18	16	1.86
46181--46224	22	2.0	22	95	0	79	18	15	45	20	1.85
46412--46484	20	3.7	20	94	0	119	24	20	27	27	1.99
46495--46546	20	2.5	20	81	3	59	17	25	19	38	1.93
46574--46617	21	2.1	21	86	0	61	34	29	15	20	1.94
48424--48467	21	2.1	21	82	0	52	18	27	31	22	1.97
50539--50712	70	2.5	70	98	0	330	16	13	15	54	1.71
51822--51899	40	1.9	41	97	2	149	30	11	5	52	1.59
53412--53475	32	2.0	32	90	0	101	43	14	21	20	1.87
56248--56323	31	2.5	31	88	0	116	31	21	14	32	1.93
58740--58905	49	3.3	49	84	5	174	25	12	15	46	1.80
58767--58919	49	3.1	49	84	6	195	25	12	13	49	1.76
59352--59388	2	18.5	2	100	0	74	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62102--62203	2	54.5	2	70	13	65	48	0	0	51	1.00
62703--62785	37	2.2	38	80	4	98	40	4	13	40	1.65
67494--67570	28	2.8	27	74	5	73	29	15	5	49	1.66
67528--67760	117	2.0	120	86	2	328	29	13	3	53	1.57
71818--71884	14	4.6	14	92	3	80	49	8	0	41	1.34
71821--71884	4	16.0	4	93	0	83	50	7	0	42	1.31
71821--71881	18	3.4	18	93	0	95	50	8	0	40	1.32
79159--79206	20	2.4	20	96	0	87	41	0	14	43	1.45
81184--81237	24	2.2	24	80	9	65	53	7	7	31	1.56
87766--87797	11	3.1	11	86	13	50	59	0	0	40	0.97
87798--87868	21	3.4	21	88	0	97	49	0	1	49	1.09
88007--88065	24	2.4	24	81	16	75	59	0	0	40	0.97
88044--88075	16	2.0	16	93	0	55	59	0	0	40	0.97
87969--88081	24	4.6	24	67	25	67	56	0	0	43	0.99
89120--89173	24	2.2	25	80	3	65	62	14	0	22	1.31
89760--89807	24	2.0	24	95	0	87	41	14	0	43	1.45
94480--94517	21	1.9	20	89	10	60	39	31	10	18	1.85
94547--94633	2	46.5	2	82	13	105	51	0	0	48	1.00
94511--94629	32	3.5	33	85	8	132	54	0	0	45	0.99
96330--96512	95	2.0	90	88	5	267	44	15	15	24	1.86
99210--99558	181	1.9	184	89	5	548	47	7	3	42	1.46
99672--99727	31	1.9	30	82	13	73	44	7	19	28	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100414--100504	32	2.9	32	91	6	150	16	16	8	58	1.62
101048--101234	94	2.0	95	89	4	288	22	20	6	50	1.72
100931--101462	43	12.2	44	74	12	316	25	18	6	49	1.71
101144--101462	87	3.7	84	78	7	309	25	20	7	47	1.75
101148--101462	131	2.4	129	87	4	438	25	20	7	46	1.76
105362--105390	14	2.0	15	93	6	51	13	10	27	48	1.75
109632--109694	26	2.4	26	100	0	126	44	20	11	23	1.83

Tables:   1

The End!