Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006254.1 Hibiscus syriacus cultivar Beakdansim tig00014925_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96214

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2226--2260
12
3.0
12
87
4
54
11
14
8
65
1.46
5047--5136
3
30.3
3
97
2
173
34
0
0
65
0.93
18264--18321
11
5.3
11
82
10
66
81
0
5
13
0.86
18264--18337
5
12.7
6
70
20
50
79
0
6
13
0.91
18265--18313
24
2.1
24
92
3
82
79
0
4
16
0.88
18262--18337
30
2.6
30
82
14
95
77
0
7
14
0.98
18265--18326
12
5.3
12
84
3
65
80
0
6
12
0.89
19503--19952
110
4.1
110
88
0
648
31
22
16
29
1.96
20163--20230
3
22.7
3
100
0
136
33
0
0
66
0.92
21297--21321
2
12.5
2
100
0
50
48
0
0
52
1.00
21822--21896
2
39.5
2
74
15
70
45
2
2
49
1.30
21952--22014
2
31.5
2
100
0
126
50
0
0
49
1.00
22241--22274
2
17.0
2
100
0
68
50
0
0
50
1.00
26370--26524
62
2.5
60
85
6
197
34
15
18
31
1.92
26370--26541
60
2.8
60
80
5
193
35
15
17
31
1.91
26370--26565
60
3.2
59
76
11
182
32
15
18
32
1.93
30688--30775
24
3.7
24
80
6
97
48
17
14
19
1.81
30688--30752
12
5.4
13
73
15
59
52
16
13
16
1.75
30688--30789
24
4.2
24
76
9
84
49
16
15
18
1.81
33203--33231
13
2.2
13
100
0
58
13
24
44
17
1.85
35301--35348
12
4.0
12
83
0
69
50
18
16
14
1.79
35303--35385
24
3.5
24
77
9
80
44
18
18
19
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42682--42743
23
2.9
21
78
7
63
24
33
25
16
1.95
47305--47334
13
2.3
13
94
0
51
13
23
43
20
1.86
48187--48236
21
2.4
21
75
0
55
32
24
16
28
1.96
48364--48433
15
4.7
15
74
15
56
67
4
0
28
1.10
48377--48442
29
2.4
27
76
20
73
68
4
0
27
1.09
50117--50202
25
3.1
28
74
17
90
55
0
0
44
0.99
50128--50236
24
4.3
24
77
17
105
57
0
0
41
1.05
50118--50236
52
2.3
53
84
11
133
56
0
0
42
1.05
50181--50252
25
3.0
22
77
15
81
55
0
1
43
1.08
50146--50236
25
3.6
26
81
12
109
57
0
1
41
1.06
50623--50679
2
28.5
2
100
0
114
50
0
0
49
1.00
51023--51087
31
2.1
32
91
2
105
53
7
7
30
1.57
51143--51231
2
44.5
2
100
0
178
50
0
0
49
1.00
51451--51526
23
3.3
23
100
0
152
32
7
35
23
1.84
53043--53067
1
25.0
1
100
0
50
0
0
0
100
0.00
55256--55899
322
2.0
322
97
0
1216
33
17
18
30
1.94
57036--57086
20
2.6
20
90
3
77
33
13
7
45
1.73
71720--71757
15
2.5
15
100
0
76
31
23
7
36
1.84
72956--73020
25
2.7
26
90
7
93
32
18
20
29
1.96
89756--89789
13
2.8
12
86
8
50
82
0
2
14
0.79
89761--89789
13
2.2
13
100
0
58
86
0
0
13
0.58

Tables:   1

The End!