Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006255.1 Hibiscus syriacus cultivar Beakdansim tig00014927_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146525

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17337--17367
14
2.2
14
100
0
62
48
12
12
25
1.77
19158--19196
19
2.1
19
85
0
51
23
25
20
30
1.98
21106--21145
21
1.9
21
89
0
62
55
7
7
30
1.56
23059--23142
42
2.0
42
95
0
150
29
16
17
35
1.93
28019--28057
19
2.1
19
85
0
51
23
25
20
30
1.98
32672--32718
23
2.0
23
87
0
67
36
17
19
27
1.93
33021--33093
31
2.4
31
81
4
85
28
10
9
50
1.69
34173--34210
2
19.0
2
100
0
76
50
0
0
50
1.00
41926--42837
300
3.0
300
91
1
1445
33
17
15
33
1.91
55839--55868
2
15.0
2
100
0
60
50
0
0
50
1.00
60507--60541
2
17.5
2
100
0
70
51
0
0
48
1.00
60769--60798
8
3.6
8
95
4
51
0
63
0
36
0.95
69652--69698
23
2.0
23
88
8
69
40
0
2
57
1.11
71127--71176
5
9.6
5
80
8
55
78
6
2
14
1.03
76914--76971
17
3.4
17
77
18
57
44
3
5
46
1.42
79209--79267
31
1.9
31
92
0
100
30
28
8
32
1.87
86567--86618
17
3.1
17
72
13
54
42
3
3
50
1.39
86849--86902
19
2.8
20
83
11
67
14
20
38
25
1.91
86849--86902
10
5.5
10
82
8
67
14
20
38
25
1.91
94584--94619
18
2.0
18
100
0
72
16
27
16
38
1.90
96228--96264
7
5.4
7
93
6
67
24
29
29
16
1.96
96228--96264
13
2.7
14
91
8
67
24
29
29
16
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96285--96334
10
5.2
10
80
9
59
22
34
26
18
1.96
96290--96372
19
4.3
19
86
7
114
26
28
25
19
1.98
96290--96372
9
8.6
10
75
12
84
26
28
25
19
1.98
103540--103576
7
5.4
7
93
6
67
24
29
29
16
1.96
103540--103576
13
2.7
14
91
8
67
24
29
29
16
1.96
103566--103606
17
2.4
17
95
0
73
17
24
41
17
1.89
103602--103651
9
5.1
10
74
13
50
28
30
22
20
1.98
103600--103651
20
2.7
19
87
3
68
26
28
25
19
1.98
105128--105188
2
30.5
2
100
0
122
49
0
0
50
1.00
113203--113280
30
2.6
29
80
6
102
21
28
21
28
1.99
114498--114541
21
2.1
21
83
8
54
34
18
0
47
1.49
114790--114856
21
3.2
21
100
0
134
34
26
10
28
1.90
120100--120135
18
2.0
18
100
0
72
16
27
16
38
1.90
122856--122931
29
2.6
28
81
10
82
30
14
27
27
1.95
125757--125792
18
2.0
18
100
0
72
16
27
16
38
1.90
126468--126514
2
23.5
2
100
0
94
51
0
0
48
1.00
127110--127145
2
18.0
2
100
0
72
50
0
0
50
1.00
128091--128136
21
2.1
22
96
4
85
45
4
0
50
1.21
128098--128148
21
2.5
21
87
9
70
49
7
0
43
1.32
128177--128223
23
2.0
23
88
8
69
40
0
2
57
1.11
129183--129449
134
2.0
134
97
0
507
22
20
23
32
1.98
136140--136189
24
2.1
24
100
0
100
30
12
12
46
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
139514--139623
53
2.1
53
100
0
220
12
27
13
46
1.80
141330--141365
18
2.0
18
100
0
72
16
27
16
38
1.90
142030--142063
2
16.5
2
93
6
59
50
2
0
47
1.16

Tables:   1

The End!