Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006256.1 Hibiscus syriacus cultivar Beakdansim tig00014931_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57878

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3203--3247
22
2.0
22
83
8
56
55
28
4
11
1.54
3956--4310
135
2.6
134
83
4
446
33
20
16
29
1.95
5669--5720
21
2.5
22
90
6
81
5
9
0
84
0.77
5669--5711
12
3.8
12
79
14
56
6
9
0
83
0.80
5677--5719
18
2.4
18
88
7
61
4
9
0
86
0.71
22464--22515
3
17.3
3
76
7
52
61
3
3
30
1.32
22935--23004
28
2.5
29
81
6
90
48
12
12
25
1.77
22955--23030
28
2.6
28
85
10
100
48
11
13
26
1.76
23696--23762
30
2.2
30
75
0
71
49
10
11
28
1.73
23621--23933
96
3.4
91
77
13
282
39
14
12
32
1.84
23783--23845
30
2.1
30
94
2
110
38
14
9
38
1.78
23893--23965
30
2.5
29
79
14
78
42
16
6
34
1.75
23988--24094
28
3.8
25
74
16
70
45
15
9
28
1.78
23794--24113
118
2.7
119
91
4
495
43
15
11
28
1.82
24348--24409
21
3.1
21
62
17
51
35
12
20
30
1.91
24342--24450
38
2.9
36
82
6
119
34
12
19
33
1.90
31816--31867
3
17.3
3
76
7
52
61
3
3
30
1.32
32340--32374
13
2.7
13
95
0
61
51
0
37
11
1.38
42678--42726
21
2.3
21
100
0
98
55
14
14
16
1.70
43941--44032
38
2.4
38
85
1
112
38
17
16
28
1.91
43974--44056
38
2.4
36
82
11
102
39
15
15
28
1.88
44089--44171
20
4.2
20
73
11
80
26
20
21
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47920--50165
748
3.0
749
99
0
4403
37
11
18
31
1.88
51144--51245
24
4.2
24
68
5
71
24
8
15
50
1.72
51179--51250
24
3.0
24
76
8
74
23
8
16
51
1.71
52036--52071
18
2.1
17
89
5
54
30
2
5
61
1.33
52542--52581
21
1.9
21
100
0
80
45
10
5
40
1.60
54004--54228
54
4.2
54
86
1
301
30
12
18
37
1.89

Tables:   1

The End!