genome.fa.s6257.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006257.1 Hibiscus syriacus cultivar Beakdansim tig00014932_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58234

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7259--7346	24	3.7	23	83	6	104	18	15	18	47	1.83
7259--7341	12	6.9	12	74	10	80	18	16	18	46	1.84
7245--7348	48	2.2	48	84	6	131	17	17	17	48	1.82
10785--10813	14	2.1	14	100	0	58	79	0	6	13	0.93
11518--11580	25	2.4	26	76	5	65	65	3	0	31	1.09
11576--11629	28	1.9	28	85	7	74	46	11	0	42	1.39
11698--11863	33	5.1	30	79	13	161	42	9	3	45	1.51
11646--11893	35	7.3	33	83	8	268	41	10	3	44	1.57
11847--11928	23	3.5	23	75	3	83	37	13	6	42	1.69
11869--11905	12	3.1	12	100	0	74	32	16	8	43	1.77
11834--11928	47	2.0	47	91	0	154	36	14	6	42	1.71
11936--11983	23	2.0	24	88	4	71	52	2	0	45	1.12
17841--17893	24	2.2	24	83	12	65	54	3	11	30	1.53
17840--17895	23	2.4	25	82	17	75	51	3	10	33	1.54
22571--22609	2	19.5	2	100	0	78	51	0	0	48	1.00
22607--23285	340	2.0	341	98	0	1315	31	18	17	32	1.94
24077--24135	2	29.5	2	100	0	118	49	0	0	50	1.00
25188--25871	340	2.0	339	99	0	1341	31	13	17	38	1.87
26177--26249	38	1.9	38	94	2	130	13	8	34	43	1.74
35046--35203	21	7.8	20	72	7	86	38	25	17	18	1.92
35170--35363	20	9.6	20	81	5	221	35	25	19	19	1.95
35170--35363	60	3.2	60	83	0	253	35	25	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35746--35816	33	2.2	33	92	0	115	11	22	18	47	1.80
35896--36000	20	5.6	19	72	19	87	44	19	24	11	1.83
35895--36004	33	2.9	41	83	14	139	44	18	25	11	1.83
35955--36011	14	3.7	14	75	20	60	43	22	24	8	1.81
35947--36027	33	2.5	33	93	0	135	46	20	22	9	1.80
36023--36128	19	6.1	19	72	20	106	10	23	20	45	1.82
36045--36101	14	3.7	14	75	20	60	8	24	22	43	1.81
36028--36120	33	2.8	33	98	0	177	9	22	22	45	1.81
37827--38387	93	6.1	93	98	0	1090	22	12	19	45	1.83
38435--38563	19	7.3	19	75	17	125	45	28	17	8	1.77
38471--38563	33	2.8	32	91	4	150	46	27	18	7	1.76
38435--38563	52	2.5	52	74	14	140	45	28	17	8	1.77
38559--38693	19	7.6	19	75	16	128	11	19	23	45	1.82
38581--38637	14	3.7	14	77	20	60	10	21	22	45	1.82
38564--38656	33	2.8	33	95	0	168	10	20	21	47	1.80
40616--40651	14	2.6	14	95	0	63	33	0	22	44	1.53
40758--40855	19	5.4	19	84	13	143	45	17	22	14	1.84
40758--40873	53	2.2	53	98	1	225	43	18	24	13	1.86
40902--41136	19	13.4	19	79	16	278	14	21	17	46	1.83
40880--41150	33	7.9	33	90	7	384	13	22	18	45	1.84
43630--43676	24	2.0	24	87	8	69	38	21	14	25	1.92
44359--44588	20	11.5	20	85	3	230	20	18	24	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44555--44652	21	4.8	20	75	15	83	22	17	22	37	1.94
44555--44653	42	2.4	43	78	8	107	22	17	23	37	1.94
49295--49373	23	3.4	23	78	0	95	27	12	16	43	1.84

Tables:   1

The End!