genome.fa.s6258.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006258.1 Hibiscus syriacus cultivar Beakdansim tig00014933_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64303

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1234--1281	23	2.0	24	84	4	62	70	12	10	6	1.32
3389--3721	113	3.0	112	91	2	517	33	16	20	29	1.94
5030--5188	73	2.2	74	82	3	187	30	15	22	32	1.94
6047--6197	54	2.9	53	87	6	211	38	15	21	23	1.92
6559--6613	22	2.5	22	85	5	76	34	12	14	38	1.84
7277--8121	74	11.4	76	94	3	1417	22	20	23	34	1.97
8277--8341	3	21.7	3	79	6	69	40	1	0	58	1.07
8277--8341	21	3.1	22	89	6	91	40	1	0	58	1.07
8351--8402	26	2.0	26	92	0	86	42	30	17	9	1.81
8525--8559	17	2.1	17	100	0	70	17	40	31	11	1.85
8725--8770	22	2.1	22	84	8	58	69	6	23	0	1.11
15015--15089	38	1.9	38	86	2	105	42	2	4	50	1.35
21349--21492	60	2.4	60	78	9	157	40	5	17	36	1.73
21681--21707	4	6.8	4	100	0	54	25	0	25	48	1.52
21696--21768	33	2.2	32	85	7	94	36	5	12	45	1.65
21873--21919	23	2.0	24	84	12	62	38	19	10	31	1.86
24178--24274	46	2.1	46	100	0	194	25	4	24	45	1.71
24697--24745	20	2.6	19	78	9	55	36	2	24	36	1.67
25574--25635	2	31.0	2	100	0	124	50	0	0	50	1.00
25924--25967	22	2.0	22	90	0	70	36	0	15	47	1.46
26134--26220	39	2.2	39	83	0	111	24	18	28	28	1.98
26420--26519	43	2.4	41	82	12	123	30	13	9	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26447--26535	43	2.1	43	95	0	160	32	14	7	44	1.74
28435--28684	20	12.2	20	75	8	182	40	24	18	16	1.91
28497--28675	42	4.3	42	88	6	226	36	27	17	17	1.93
28784--28851	5	12.6	5	98	1	91	26	54	19	0	1.44
29334--29406	5	13.6	5	98	1	101	0	26	54	19	1.44
29515--29633	22	5.6	22	80	7	156	16	19	27	36	1.93
29506--29695	20	9.2	20	73	9	150	15	19	24	40	1.90
29506--29693	84	2.3	82	87	4	254	15	19	24	39	1.91
29506--29639	42	3.2	42	98	0	259	16	19	24	39	1.91
31757--32237	130	3.7	131	88	1	698	32	14	12	40	1.84
35363--36145	200	4.0	199	82	8	941	33	13	13	39	1.84
35376--36141	376	2.0	378	87	3	1096	33	13	13	39	1.84
36131--36204	21	3.6	21	94	1	123	44	17	13	24	1.85
37042--37135	49	1.9	49	97	0	179	37	17	7	38	1.77
38994--39026	12	2.8	12	95	0	57	0	45	0	54	0.99
38999--39050	18	3.1	16	78	13	52	3	40	1	53	1.30
41199--41754	197	2.8	198	82	3	680	32	16	12	38	1.87
42250--42352	52	2.0	52	90	3	163	33	8	6	50	1.60
46927--46964	17	2.2	17	86	9	51	63	13	13	10	1.53
47328--47391	17	3.2	20	69	20	62	39	10	21	28	1.87
47306--47546	116	2.1	116	85	3	324	36	16	20	26	1.93
47519--47601	46	1.9	43	83	13	109	28	26	14	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47649--47766	37	3.2	35	76	16	105	33	16	7	42	1.76
47707--47777	36	2.0	36	86	5	99	32	19	5	42	1.75
50328--50391	23	2.7	24	85	9	78	50	14	7	28	1.70
50958--51013	24	2.4	24	87	3	78	51	17	5	25	1.66
53166--53205	18	2.2	18	90	0	62	52	5	15	27	1.63
63869--64046	54	3.4	54	82	6	240	38	19	11	30	1.86
63869--64046	51	3.4	53	84	6	238	38	19	11	30	1.86
63852--64047	105	1.9	102	88	4	295	39	18	10	31	1.85

Tables:   1

The End!