Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006259.1 Hibiscus syriacus cultivar Beakdansim tig00014934_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123613

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102--143
22
1.9
22
90
9
68
59
2
0
38
1.10
761--804
23
1.9
23
85
0
61
38
29
20
11
1.87
1145--1196
21
2.5
21
96
0
95
19
32
26
21
1.97
3632--3823
67
2.9
67
80
3
215
28
21
17
32
1.96
3710--3876
67
2.5
67
82
2
183
30
19
14
35
1.92
3871--4863
81
12.3
81
83
1
1100
38
22
17
21
1.93
7851--7993
74
1.9
74
100
0
286
23
17
13
45
1.84
11340--11398
29
2.1
29
90
6
95
42
11
5
40
1.64
11751--11825
2
37.5
2
97
0
141
50
1
0
48
1.09
16271--16346
36
2.1
36
97
0
143
31
10
14
43
1.79
23938--23976
20
2.0
20
84
0
51
23
20
20
35
1.96
27532--27618
22
4.0
22
87
0
129
42
19
11
26
1.85
27559--27621
10
5.9
10
75
14
54
39
17
15
26
1.90
27956--28080
45
2.8
45
85
3
153
31
24
6
38
1.80
35000--35029
13
2.3
13
94
0
51
60
23
10
6
1.52
39782--39866
22
3.9
22
100
0
170
45
18
12
22
1.83
39782--39875
10
8.8
10
78
13
98
45
19
12
22
1.83
40209--40333
45
2.8
45
85
3
153
31
21
8
39
1.82
46298--46379
40
2.0
40
95
0
146
24
15
25
34
1.95
47095--47172
40
2.0
40
87
5
113
35
23
19
21
1.96
47692--47773
40
2.0
40
92
0
137
32
28
15
23
1.95
51439--51493
21
2.6
21
88
0
74
27
18
21
32
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56536--56623
44
2.0
44
100
0
176
52
22
2
22
1.58
58690--58753
26
2.5
26
82
2
85
17
10
6
65
1.43
62342--62412
36
2.0
36
97
0
133
35
12
29
22
1.91
64814--64846
6
5.7
6
92
7
59
18
0
0
81
0.68
64814--64846
11
2.8
12
90
9
59
18
0
0
81
0.68
64814--64846
17
1.9
17
100
0
66
18
0
0
81
0.68
66824--66873
12
4.2
12
82
10
66
4
18
48
30
1.66
81816--81840
13
1.9
13
100
0
50
16
24
28
32
1.96
86748--86777
6
4.8
6
92
8
51
16
0
0
83
0.65
98175--98221
24
2.0
24
83
8
60
57
12
2
27
1.47
101522--101565
20
2.2
20
84
4
63
65
0
15
18
1.27
108259--108305
24
2.0
24
83
8
60
57
12
2
27
1.47
111138--111178
21
2.0
21
90
0
64
36
14
14
34
1.87
113878--113952
3
25.0
3
84
0
96
40
1
0
58
1.06
121883--122058
75
2.4
75
88
0
246
30
13
24
31
1.94
123402--123591
41
4.5
43
86
4
273
28
23
21
27
1.99
123401--123591
83
2.3
84
87
4
271
28
23
21
27
1.99

Tables:   1

The End!