Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000626.1 Hibiscus syriacus cultivar Beakdansim tig00001214_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70215

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3099--3136
19
2.0
19
89
0
58
28
21
31
18
1.97
8812--8860
24
2.1
23
84
3
62
75
2
0
22
0.90
8797--8861
27
2.4
28
73
17
64
70
1
3
24
1.10
11093--12489
80
17.2
80
82
4
1527
24
18
23
33
1.97
11093--12489
321
4.3
325
85
4
1709
24
18
23
33
1.97
11157--12489
483
2.8
485
86
3
1785
24
18
23
33
1.97
13267--13529
95
2.7
95
85
3
339
33
18
15
33
1.92
18231--18262
15
2.1
15
94
0
55
71
3
0
25
1.00
18922--19096
90
2.0
89
91
1
287
37
11
6
44
1.67
24968--25145
90
2.0
90
91
2
286
36
11
6
45
1.66
30795--30901
54
2.0
55
86
1
153
38
17
11
32
1.85
32469--32502
17
2.0
17
100
0
68
35
0
17
47
1.48
33424--33488
30
2.2
30
88
5
96
35
1
32
30
1.67
33409--33466
15
3.9
15
72
22
59
31
1
36
31
1.68
33435--33503
15
4.6
15
76
7
68
37
1
27
33
1.66
33408--33504
45
2.2
45
83
7
117
34
2
31
31
1.70
36433--37220
111
7.1
111
91
0
1209
28
16
24
30
1.96
38394--38442
10
5.1
10
75
24
52
10
10
0
79
0.93
38394--38434
18
2.2
19
83
12
50
9
12
0
78
0.98
38394--38442
19
2.6
19
78
18
57
10
10
0
79
0.93
41084--41124
11
3.9
11
78
12
50
41
9
29
19
1.83
41085--41125
20
2.0
20
100
0
82
41
9
29
19
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41143--41175
16
2.1
16
88
11
50
75
0
9
15
1.03
41650--41699
24
2.1
24
85
7
66
56
14
4
26
1.56
51154--51257
37
2.8
37
85
0
136
41
14
13
30
1.84
51962--52010
13
3.3
15
80
16
57
22
0
6
71
1.08
51939--52023
30
2.9
28
71
15
73
25
3
4
65
1.28
56692--56751
8
7.5
8
71
14
52
81
3
13
1
0.89
57355--57440
22
3.9
22
84
1
109
39
27
11
20
1.88
58270--59313
106
9.9
106
88
3
1446
33
23
18
23
1.97
60044--60148
37
2.8
37
85
0
147
40
15
14
30
1.87
60639--60679
22
1.9
21
85
14
57
24
0
7
68
1.15
60968--60996
2
14.5
2
100
0
58
48
0
0
51
1.00
61563--61595
16
2.1
16
88
11
50
75
0
9
15
1.03
62035--62084
24
2.1
24
88
7
75
58
14
2
26
1.47
67328--67388
21
2.9
21
97
0
113
39
14
21
24
1.91

Tables:   1

The End!