genome.fa.s6260.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006260.1 Hibiscus syriacus cultivar Beakdansim tig00014935_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  167683

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11103--11132	14	2.2	14	94	5	53	86	0	0	13	0.57
24825--24867	15	2.9	15	92	0	68	23	25	25	25	2.00
44151--44188	14	2.7	14	84	11	51	21	10	28	39	1.86
44452--44478	2	13.5	2	100	0	54	48	0	0	51	1.00
44693--44730	5	7.4	5	91	8	51	23	0	0	76	0.79
44990--45048	3	19.3	3	75	16	50	25	3	1	69	1.13
45806--45853	21	2.3	21	78	7	53	60	6	25	8	1.49
48821--49564	85	8.7	85	84	2	868	34	20	19	25	1.96
48824--49489	171	3.9	171	87	2	865	34	21	19	24	1.96
48824--49507	256	2.7	254	85	4	894	34	21	19	25	1.96
49911--49987	3	26.3	3	78	10	79	38	3	0	57	1.17
49911--49985	36	2.1	34	90	4	114	38	4	0	57	1.18
53638--54001	178	2.0	178	89	2	570	39	15	22	21	1.91
58499--58550	7	6.7	7	91	8	59	76	0	11	11	1.01
58489--58557	17	4.1	17	83	10	97	75	0	13	11	1.05
58488--58562	10	8.6	9	83	16	88	76	0	12	12	1.04
58482--58557	25	3.0	24	85	12	100	75	0	14	10	1.06
58482--58551	8	8.5	8	83	14	81	75	0	14	10	1.04
59564--60142	55	10.7	55	83	4	698	28	14	26	30	1.95
59564--60142	106	5.4	106	84	5	664	28	14	26	30	1.95
59564--60091	161	3.3	161	86	3	740	29	14	26	29	1.95
60318--60373	11	4.5	12	77	18	53	46	1	0	51	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60334--60414	3	27.3	3	83	7	103	38	2	0	59	1.11
64679--64809	12	11.0	11	69	17	59	20	3	3	71	1.17
64761--64789	15	1.9	15	100	0	58	10	0	6	82	0.83
65364--65442	9	10.0	8	70	17	58	18	1	2	77	0.96
65395--65441	6	7.5	6	77	17	51	19	0	2	78	0.85
65367--65440	26	3.0	24	79	16	71	18	1	2	77	0.97
65353--65444	14	6.4	14	74	20	73	21	1	2	75	0.98
65364--65441	42	2.0	42	85	10	110	19	1	2	76	0.96
66727--66773	22	2.2	21	85	11	60	27	8	2	61	1.36
68067--68463	137	2.9	136	87	3	580	25	16	25	32	1.96
68405--68560	43	3.4	43	75	17	168	25	17	23	33	1.96
68347--68560	97	2.2	97	91	1	349	26	16	23	34	1.95
68217--68680	234	2.0	234	90	0	721	26	15	24	33	1.95
68822--68881	25	2.4	25	94	2	104	35	15	18	31	1.91
68889--69356	108	4.3	108	95	1	814	23	18	24	33	1.97
69281--69399	43	2.8	42	84	6	134	24	16	26	31	1.96
69423--69628	103	2.0	103	89	0	313	26	12	19	41	1.87
69610--69734	58	2.2	58	94	0	214	29	13	22	34	1.92
71138--71283	51	2.8	51	85	7	197	21	19	19	38	1.94
72667--72798	1	132.0	1	74	0	102	6	6	0	86	0.71
72669--72800	8	17.1	8	83	9	114	6	7	0	85	0.74
72669--72788	15	7.9	15	84	12	113	6	7	0	85	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72667--72797	16	8.4	16	84	9	130	6	6	0	86	0.71
75212--75288	20	3.9	19	75	14	68	51	5	19	23	1.66
77116--77162	22	2.2	21	88	11	69	27	6	2	63	1.30
78735--78770	18	2.0	18	94	0	63	33	13	16	36	1.89
82247--82281	16	2.2	16	94	0	61	17	25	17	40	1.90
83832--83878	2	23.5	2	95	0	85	51	0	0	48	1.00
85842--85866	13	1.9	13	100	0	50	40	0	0	60	0.97
90586--90628	19	2.3	19	95	0	77	46	20	6	25	1.76
94270--94327	25	2.5	22	78	13	62	48	0	1	50	1.11
94284--94327	22	2.0	22	86	4	61	54	0	2	43	1.12
95670--96045	186	2.0	186	97	1	709	29	17	10	42	1.83
98423--98656	125	1.9	127	84	4	321	39	13	20	27	1.89
100327--100414	31	2.9	29	84	6	104	53	9	17	20	1.70
100520--100580	27	2.2	29	88	11	92	49	21	9	19	1.77
101386--101532	52	2.8	52	82	0	177	39	12	12	36	1.80
101884--101985	39	2.5	43	84	12	158	40	24	7	27	1.83
108715--108926	60	3.5	60	79	7	241	16	21	27	34	1.95
108715--108981	120	2.2	120	79	6	276	16	22	27	34	1.95
109429--109468	16	2.5	16	100	0	80	37	27	17	17	1.92
110019--110102	43	1.9	44	90	2	134	44	3	0	52	1.18
114635--114680	2	23.0	2	100	0	92	50	0	0	50	1.00
117072--117145	32	2.4	30	80	10	87	35	32	20	12	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118160--118382	28	7.9	28	88	3	313	41	13	4	40	1.64
118377--118481	30	3.7	29	83	5	142	39	13	3	43	1.62
123640--123666	10	2.7	10	100	0	54	40	22	7	29	1.81
126847--126886	21	1.9	21	85	10	55	35	10	2	52	1.48
128760--128801	21	2.0	21	100	0	84	42	9	9	38	1.70
128883--128941	20	2.9	21	87	10	86	13	25	37	23	1.92
138607--138761	77	2.0	77	93	2	267	32	9	23	34	1.86
139027--139097	35	2.0	35	91	0	115	23	5	33	36	1.79
140655--140691	18	2.1	18	94	0	65	18	45	21	13	1.84
143201--143263	12	5.2	12	70	21	51	25	14	22	38	1.92
143185--143300	24	4.8	24	86	6	155	24	16	18	40	1.91
143237--143310	24	3.1	24	84	3	87	22	14	18	43	1.87
145387--145414	13	2.2	13	100	0	56	17	46	21	14	1.84
145404--145437	15	2.3	15	89	0	50	17	32	23	26	1.97
147937--147999	12	5.2	12	72	14	58	26	12	22	38	1.90
147921--148036	24	4.8	24	87	6	164	25	14	18	40	1.89
149613--149686	3	25.0	3	91	2	123	63	0	0	36	0.95
158256--158296	16	2.5	17	92	4	66	24	29	31	14	1.95
162186--162224	17	2.3	17	95	0	69	48	0	7	43	1.31
162194--162290	51	1.9	51	97	0	185	43	4	4	48	1.41
163140--163175	18	2.0	18	94	0	63	52	5	8	33	1.55
165772--165913	61	2.3	61	81	0	158	38	8	4	47	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165944--166140	58	3.2	59	77	12	182	41	6	7	44	1.57
165995--166043	25	2.0	25	87	0	71	40	8	8	42	1.64
166020--166116	18	5.4	18	69	11	74	40	7	8	44	1.62
165968--166102	60	2.2	60	89	5	202	40	7	8	43	1.62
166284--166339	27	2.1	27	93	0	94	41	7	10	41	1.67
166318--166407	18	4.8	18	74	17	85	38	5	11	44	1.63
166281--166345	27	2.5	27	83	14	91	40	7	10	41	1.69
166318--166412	35	2.6	38	86	9	126	38	6	10	44	1.64
166489--167683	6	205.5	6	84	13	1566	65	0	0	33	0.99
166442--166530	32	2.9	31	81	15	105	46	4	6	42	1.50
166488--167678	29	38.7	32	79	14	713	65	0	0	33	0.99
166489--167683	23	51.9	23	84	14	1389	65	0	0	33	0.99

Tables:   1

The End!