genome.fa.s6261.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006261.1 Hibiscus syriacus cultivar Beakdansim tig00014936_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108801

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8966--9417	225	2.0	220	90	3	708	40	17	13	28	1.87
8966--9481	225	2.3	222	86	7	679	41	18	12	28	1.86
11718--11752	18	2.0	18	88	5	54	45	0	28	25	1.54
13602--13639	20	1.9	20	94	0	67	26	23	26	23	2.00
28250--28330	12	6.8	12	94	0	63	24	41	0	33	1.55
28264--28330	4	16.8	4	96	0	125	25	47	0	26	1.52
29508--31233	4	432.5	4	97	0	3230	49	25	0	24	1.55
32404--32597	82	2.4	83	85	4	259	45	10	4	38	1.60
40468--40517	13	4.2	12	71	19	50	20	6	2	72	1.16
59786--59839	22	2.5	22	96	0	99	37	14	25	22	1.93
60305--60354	20	2.5	21	78	9	61	32	22	14	32	1.93
61805--61834	15	1.9	16	93	6	53	43	0	0	56	0.99
63709--63858	40	3.8	40	92	0	246	22	15	29	32	1.95
64777--64841	29	2.2	30	86	5	89	36	20	6	36	1.77
68645--69556	311	2.9	311	98	0	1763	38	10	18	32	1.84
72143--72177	8	4.2	8	96	3	61	22	14	0	62	1.31
72971--73015	19	2.3	20	92	3	74	44	22	15	17	1.86
78548--78586	11	3.6	11	79	6	53	12	12	0	74	1.08
78548--78587	21	1.9	21	94	0	71	12	15	0	72	1.12
85294--85541	63	4.0	61	80	6	207	36	10	11	41	1.76
85713--85777	31	2.1	31	94	0	112	52	7	18	21	1.70
87191--87220	13	2.2	14	94	5	53	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88419--88491	3	24.7	3	80	13	80	68	1	2	27	1.11
88553--88641	29	3.0	28	86	8	106	47	5	5	41	1.50
88562--88648	29	3.0	30	83	11	110	47	4	6	41	1.51
88620--88848	75	3.1	72	81	9	246	43	6	4	45	1.51
88621--88849	37	6.1	38	78	10	188	42	6	4	45	1.51
88949--89007	24	2.5	24	94	0	100	37	23	32	6	1.81
90481--90530	21	2.5	19	76	17	57	40	4	2	54	1.31
90513--90553	12	3.4	12	89	0	64	48	2	0	48	1.14
90610--90653	23	1.9	23	85	0	61	34	2	9	54	1.44
107767--108389	46	13.5	46	83	5	790	25	20	13	41	1.88
107905--108010	55	1.9	56	92	1	178	26	21	13	38	1.90

Tables:   1

The End!