genome.fa.s6262.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006262.1 Hibiscus syriacus cultivar Beakdansim tig00014938_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  164353

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5401--6031	46	13.5	46	84	4	821	25	19	12	41	1.87
5538--5648	57	1.9	57	92	0	186	28	20	12	37	1.90
7082--7111	14	2.1	14	93	0	51	36	16	26	20	1.93
13302--13431	51	2.5	51	93	1	224	60	4	5	30	1.40
18066--18147	20	4.0	21	73	19	75	29	13	26	30	1.94
18563--18595	17	2.0	17	88	5	50	39	6	18	36	1.75
21811--21862	20	2.6	21	78	6	63	26	15	28	28	1.96
23345--23450	21	5.0	21	83	4	115	30	14	24	31	1.94
25666--25693	12	2.3	12	100	0	56	53	7	32	7	1.55
26137--26271	43	3.1	42	87	4	189	31	22	17	28	1.96
29368--29474	31	3.4	32	75	8	103	36	17	15	29	1.92
33254--33361	31	3.5	31	74	3	92	32	18	16	32	1.94
34117--34172	20	2.6	20	86	11	67	26	25	17	30	1.97
34160--34301	64	2.2	62	79	14	148	26	19	19	35	1.95
36418--36472	24	2.2	25	87	3	76	20	1	14	63	1.39
36418--36472	25	2.2	24	84	9	67	20	1	14	63	1.39
39180--39220	16	2.7	16	85	7	50	14	9	17	58	1.62
45950--46020	33	2.2	33	84	0	88	11	26	28	33	1.91
47910--47958	20	2.5	20	83	9	64	26	10	18	44	1.81
47907--47959	12	4.8	12	80	15	60	26	9	18	45	1.80
51930--51982	23	2.3	23	93	0	88	52	15	20	11	1.72
55588--55873	131	2.2	131	83	3	371	29	16	19	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55648--55923	131	2.1	132	78	7	296	32	16	17	33	1.92
57178--57225	25	1.9	25	87	8	71	8	22	0	68	1.16
59378--59406	4	7.2	4	100	0	58	75	0	0	24	0.80
60761--60822	30	2.0	31	93	3	108	22	3	33	40	1.70
70560--70600	22	1.9	21	90	5	64	36	36	2	24	1.69
86719--86749	13	2.4	13	94	0	53	25	22	29	22	1.99
95760--96431	335	2.0	334	95	0	1218	35	5	21	37	1.78
96895--97022	59	2.2	59	81	0	139	29	16	21	32	1.95
98369--98412	23	1.9	23	81	9	54	50	18	27	4	1.66
100190--100245	18	3.1	18	84	10	69	0	23	0	76	0.78
100193--100240	19	2.6	19	83	12	64	0	20	0	79	0.74
102406--102464	20	3.0	20	77	7	75	8	15	0	76	1.01
102422--102464	19	2.5	17	79	17	52	6	13	0	79	0.93
102408--102451	21	2.1	22	87	8	65	6	11	0	81	0.86
104518--104580	21	3.0	21	97	0	117	42	22	4	30	1.74
105614--105639	11	2.4	11	100	0	52	53	0	19	26	1.45
105812--105850	13	3.0	13	96	0	69	41	7	28	23	1.82
106260--106381	21	5.6	21	81	16	133	25	8	25	40	1.83
106257--106389	44	3.0	44	92	2	205	27	8	25	39	1.84
107796--107833	18	2.1	18	90	5	58	55	2	0	42	1.14
108727--108761	10	3.6	10	92	3	54	62	0	5	31	1.18
121206--121454	5	49.8	5	99	0	471	21	0	38	40	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121584--121721	60	2.2	61	82	8	156	33	7	13	46	1.70
122229--122268	20	2.0	21	90	5	64	40	27	15	17	1.89
127049--127112	25	2.4	27	82	10	96	42	1	9	46	1.45
127051--127104	25	2.2	25	96	0	99	40	1	11	46	1.50
127076--127182	37	2.8	38	84	9	132	42	3	7	45	1.50
128371--128405	15	2.3	15	85	0	52	22	2	2	71	1.13
128357--128411	26	2.1	27	83	10	69	21	3	1	72	1.09
131746--131800	21	2.6	21	97	0	101	40	29	10	20	1.86
139847--140002	72	2.2	72	78	2	161	35	23	13	28	1.92
140532--140715	38	4.9	38	80	10	166	45	4	5	44	1.48
140687--140716	14	2.1	14	93	0	51	40	3	6	50	1.45
140746--140780	4	8.2	4	90	9	52	22	2	0	74	0.95
140748--140780	13	2.5	13	95	0	57	21	3	0	75	0.93
140746--140784	17	2.2	18	95	4	71	23	2	0	74	0.94
140752--140815	17	3.9	16	78	15	60	17	7	0	75	1.04
141880--141932	11	4.7	11	84	9	54	24	3	0	71	1.02
141900--141933	4	8.8	4	93	6	61	26	0	0	73	0.83
157547--157723	60	3.0	59	76	10	171	35	15	4	44	1.67
157638--157728	29	3.1	29	66	20	71	34	20	4	40	1.73
158216--158336	43	2.8	43	97	0	224	39	13	5	41	1.68
161251--161936	134	5.1	134	87	0	960	29	16	23	31	1.96
162528--162680	77	2.0	79	82	7	188	42	7	5	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163746--163793	20	2.6	18	83	6	51	29	10	31	29	1.90

Tables:   1

The End!