Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006264.1 Hibiscus syriacus cultivar Beakdansim tig00014940_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90478

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1958--2051
37
2.6
37
98
1
181
36
28
13
21
1.92
4178--4285
14
7.8
14
74
9
78
47
30
0
21
1.57
4187--4296
35
3.1
34
74
6
96
47
29
0
22
1.58
5864--5908
21
2.1
21
91
0
72
33
28
22
15
1.95
6580--6623
22
2.0
22
86
4
63
45
0
22
31
1.53
7333--7782
149
3.0
148
97
1
850
27
17
20
34
1.95
7761--7805
23
2.0
23
82
8
56
20
22
28
28
1.98
11061--11105
21
2.1
21
87
0
63
31
28
24
15
1.96
11779--11822
22
2.0
22
86
4
63
45
0
22
31
1.53
12537--12989
149
3.0
149
99
0
879
28
16
20
34
1.95
12968--13012
23
2.0
23
86
0
63
20
24
28
26
1.99
13770--14140
185
2.0
184
92
1
609
46
8
3
41
1.51
14610--14683
23
3.3
22
74
12
71
47
1
0
51
1.09
14610--14683
22
3.3
21
75
16
69
47
1
0
51
1.09
15300--15338
21
1.9
19
90
10
60
53
0
0
46
1.00
15303--15341
16
2.3
17
86
8
53
53
0
0
46
1.00
16838--17072
120
2.0
119
82
5
287
37
8
9
44
1.66
19916--19951
17
2.2
16
90
5
54
16
8
8
66
1.42
23542--23586
21
2.1
21
87
0
63
31
28
24
15
1.96
24733--24810
31
2.5
31
85
4
95
21
20
23
34
1.97
24783--24882
30
3.3
30
91
2
148
21
22
26
31
1.98
27555--27599
21
2.1
21
91
0
72
33
28
22
15
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28744--28810
31
2.2
31
86
5
91
22
19
22
35
1.96
28769--28923
30
5.1
31
89
1
192
20
21
25
32
1.98
28794--28923
30
4.3
30
93
1
199
21
21
25
31
1.98
29693--29760
1
68.0
1
76
0
55
86
0
13
0
0.56
29692--29760
9
7.7
9
87
6
95
85
0
14
0
0.60
31411--31443
17
1.9
17
100
0
66
27
24
18
30
1.98
33430--33585
54
2.9
54
94
0
258
38
17
21
22
1.93
33950--34029
22
3.7
21
70
6
61
33
11
15
40
1.82
34544--34870
167
2.0
164
90
3
512
35
14
12
37
1.83
34915--35108
36
5.3
36
72
3
163
31
22
12
34
1.91
34869--35101
73
3.2
73
95
0
412
29
22
12
35
1.90
35108--35440
113
2.9
113
97
0
612
37
17
19
26
1.93
35108--35520
226
1.8
223
84
8
555
38
17
18
25
1.92
35665--35703
3
13.0
3
94
0
60
38
0
0
61
0.96
37233--37467
120
2.0
119
81
5
278
36
8
9
45
1.67
39034--39101
2
34.0
2
100
0
136
50
0
0
50
1.00
45588--45619
15
2.1
16
94
5
57
40
0
0
59
0.97
46002--46026
2
12.5
2
100
0
50
52
0
0
48
1.00
46629--46666
13
2.9
13
84
0
58
52
5
0
42
1.24
51705--51743
2
19.5
2
100
0
78
51
0
0
48
1.00
51765--51876
38
2.9
38
98
0
215
38
12
17
31
1.87
53651--53680
15
2.0
15
100
0
60
26
26
6
40
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55527--55621
5
19.8
5
75
18
69
35
2
4
57
1.30
55526--55617
48
1.9
48
84
8
125
35
3
4
56
1.35
59223--59281
31
1.9
31
86
6
84
37
15
25
22
1.93
61017--61057
7
5.9
7
100
0
82
56
0
0
43
0.99
61710--62015
118
2.6
118
93
2
505
31
28
18
21
1.97
61980--62056
39
2.0
38
95
5
138
31
28
12
27
1.93
61862--62148
155
1.9
155
93
0
502
31
27
19
21
1.97
64555--64613
21
2.8
21
89
5
84
50
8
0
40
1.33
65159--65293
66
2.0
66
89
4
207
28
17
21
31
1.96
65962--66188
118
2.0
112
84
8
296
34
13
12
39
1.82
66747--66792
16
2.9
16
93
0
74
19
19
17
43
1.88
71456--71537
28
2.9
29
81
5
105
29
15
39
15
1.89
87661--87711
3
17.0
3
100
0
102
66
33
0
0
0.92
87711--87836
3
43.3
3
92
6
197
68
2
0
29
1.02
90033--90067
17
2.1
17
100
0
70
42
5
17
34
1.73

Tables:   1

The End!