genome.fa.s6265.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006265.1 Hibiscus syriacus cultivar Beakdansim tig00014941_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110273

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7353--7378	2	13.0	2	100	0	52	50	50	0	0	1.00
11968--12005	20	1.9	20	89	10	60	34	10	0	55	1.34
12948--13174	87	2.6	87	92	0	373	41	12	13	32	1.82
13192--13692	200	2.5	197	81	6	584	31	14	13	40	1.85
14567--14608	2	20.0	2	85	9	57	45	2	2	50	1.27
14956--15013	29	2.0	29	89	0	89	37	22	12	27	1.89
15965--15994	3	10.0	3	100	0	60	33	0	0	66	0.92
26224--26282	21	2.8	20	80	10	73	20	25	16	37	1.93
26315--26444	20	6.4	20	78	5	100	30	25	18	25	1.98
26603--26636	12	2.9	12	86	4	52	17	41	5	35	1.74
29705--29798	20	4.7	20	71	13	68	35	23	20	21	1.96
29771--29888	33	3.4	33	88	8	148	46	23	19	10	1.80
29751--29888	19	7.7	19	77	17	120	44	23	20	10	1.83
29803--29899	19	5.4	19	84	14	134	46	25	16	11	1.80
29900--29991	33	2.8	33	94	0	157	13	23	17	45	1.83
29894--29991	19	5.7	19	67	22	81	13	24	17	44	1.84
30098--30134	14	2.6	14	91	0	65	45	21	0	32	1.52
31483--31605	42	2.9	41	79	7	113	22	17	36	23	1.94
32002--32058	19	2.8	21	73	10	64	49	21	17	12	1.79
32026--32064	19	2.1	19	90	0	60	48	25	17	7	1.74
32158--32413	94	2.7	94	95	0	460	48	18	11	21	1.79
32753--32827	21	3.7	21	68	19	52	14	14	40	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34082--34189	20	5.8	19	76	14	118	48	16	21	13	1.81
34082--34175	33	2.6	34	77	11	91	46	17	22	13	1.83
34786--34875	20	4.4	20	81	2	108	21	20	16	42	1.89
34786--34875	41	2.2	40	84	2	108	21	20	16	42	1.89
34877--34931	20	2.7	21	80	5	67	43	16	20	20	1.88
34877--34941	21	3.1	21	80	4	69	40	16	21	21	1.92
34992--35044	21	2.5	22	75	6	65	35	18	24	20	1.95
48744--48778	18	1.9	18	88	0	52	28	17	0	54	1.43
50066--50096	13	2.4	13	94	0	53	16	19	48	16	1.81
51011--51088	38	2.1	38	100	0	156	44	0	5	50	1.24
52019--52055	17	2.2	17	86	13	51	37	5	2	54	1.38
52064--52110	16	3.1	15	76	14	51	59	0	2	38	1.09
65483--65530	21	2.3	21	96	0	87	47	27	0	25	1.52
66652--66773	41	3.0	41	82	2	129	38	21	17	22	1.93
67152--67281	42	3.1	42	84	0	170	36	16	15	32	1.90
67398--67589	83	2.3	82	81	3	222	31	15	17	34	1.92
69021--69058	20	1.9	20	100	0	76	34	21	21	23	1.97
70052--70112	23	2.7	23	86	0	95	18	26	26	29	1.98
76247--76289	15	2.9	15	85	0	68	37	20	16	25	1.93
76701--76750	2	25.0	2	100	0	100	50	0	0	50	1.00
78897--78958	24	2.6	24	86	0	88	12	11	22	53	1.71
80081--80147	16	4.3	16	88	3	93	10	8	19	61	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80079--80139	32	1.9	32	93	0	104	8	11	22	57	1.60
80933--81014	27	3.1	27	65	16	64	25	14	1	58	1.44
89337--89392	29	2.0	29	82	10	71	60	1	3	33	1.24
91888--91933	2	24.0	2	83	16	62	47	2	0	50	1.13
93154--93178	13	1.9	13	100	0	50	20	0	0	80	0.72
98236--99176	165	5.7	164	89	2	1151	29	24	20	24	1.99
98437--99242	411	2.0	412	91	0	1328	30	25	19	24	1.98
98449--99248	164	4.8	165	88	2	580	30	24	20	24	1.98
98273--99261	411	2.4	412	86	2	1313	30	24	20	24	1.99
101074--101098	13	1.9	13	100	0	50	20	0	0	80	0.72
101352--101379	6	4.7	6	100	0	56	28	0	0	71	0.86
107070--107106	17	2.3	16	90	9	58	51	0	0	48	1.00
109133--109157	13	1.9	13	100	0	50	24	16	16	44	1.86
109481--109524	2	23.0	2	86	9	65	50	0	0	50	1.00
109787--109811	12	2.1	12	100	0	50	68	0	8	24	1.16

Tables:   1

The End!