genome.fa.s6266.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006266.1 Hibiscus syriacus cultivar Beakdansim tig00014942_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58403

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3173--3352	95	1.9	94	86	5	256	31	18	17	32	1.94
4703--5060	36	10.1	36	78	8	308	25	20	13	41	1.88
4960--5067	37	2.9	37	94	0	180	27	19	11	41	1.85
5056--5140	31	2.8	29	74	12	80	35	21	8	35	1.83
5076--5140	31	2.1	31	85	0	85	36	20	7	35	1.81
6807--6872	9	7.2	9	75	21	66	31	1	1	65	1.11
12518--12609	36	2.5	36	89	1	139	29	21	9	39	1.86
12585--12634	21	2.4	21	93	0	82	30	20	6	44	1.75
12549--12670	57	2.1	57	86	0	163	27	21	9	41	1.84
12527--12895	102	3.7	99	82	8	403	26	19	12	40	1.88
12704--13098	36	11.2	36	73	9	233	24	19	13	42	1.87
12704--13094	174	2.2	175	86	4	522	25	19	13	42	1.87
12806--13094	72	4.1	72	77	10	308	24	19	13	42	1.87
12980--13101	37	3.3	37	82	3	149	23	19	13	43	1.86
13090--13174	31	2.8	31	85	1	109	34	22	8	35	1.84
13509--13547	20	2.0	19	85	5	51	38	0	5	56	1.22
14715--14767	25	2.2	24	83	10	63	20	5	0	73	1.03
14787--14855	14	5.1	14	71	23	51	31	2	1	63	1.18
16723--16804	37	2.2	37	91	0	128	35	14	18	31	1.91
19635--19681	24	2.0	24	100	0	94	17	14	25	42	1.87
21864--22049	92	2.0	92	91	2	302	41	5	9	44	1.59
22751--22790	12	3.3	12	96	0	71	42	25	2	30	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22956--23046	2	46.0	2	97	2	175	50	0	0	49	1.00
25342--25378	3	12.7	3	83	16	51	32	0	0	67	0.91
27530--27557	2	14.0	2	100	0	56	50	0	0	50	1.00
30861--30892	15	2.1	15	94	0	55	25	18	9	46	1.79
34727--35765	124	8.4	124	94	0	1719	41	15	17	25	1.89
36004--36040	3	12.7	3	83	16	51	32	0	0	67	0.91
37357--37402	2	24.5	2	79	20	55	45	2	0	52	1.13
38226--38383	77	2.0	78	81	3	185	36	10	17	36	1.83
42553--42597	18	2.6	18	82	10	58	35	11	11	42	1.76
47850--48073	42	5.2	43	74	8	143	24	14	24	36	1.93
48505--48544	21	1.9	21	89	0	62	2	37	22	37	1.68
48502--48554	21	2.5	21	75	0	61	3	39	16	39	1.67
56290--56341	17	3.0	17	77	2	59	17	15	44	23	1.86
57351--57543	39	4.9	40	76	9	152	32	18	13	35	1.90
57358--57523	39	4.2	41	78	6	173	31	19	13	34	1.91
57351--57523	80	2.2	79	81	7	190	34	19	12	34	1.89
57600--57741	41	3.5	39	72	15	110	23	17	18	40	1.91
57634--57778	42	3.5	41	76	13	143	23	18	18	39	1.92
57581--57783	83	2.4	83	86	1	300	24	20	17	37	1.93
57634--57763	41	3.1	41	75	14	140	24	15	18	41	1.89

Tables:   1

The End!