Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006267.1 Hibiscus syriacus cultivar Beakdansim tig00014946_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75045

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
562--604
22
2.0
22
90
0
68
58
16
13
11
1.64
609--640
16
2.1
16
94
5
57
81
0
12
6
0.87
8579--8617
21
1.9
20
94
5
69
64
5
12
17
1.46
10888--10919
3
10.7
3
100
0
64
68
0
0
31
0.90
12122--12269
5
30.0
5
74
11
94
74
4
4
16
1.15
12122--12182
22
2.6
24
82
10
81
77
3
3
16
1.04
12129--12275
31
4.5
31
69
20
88
75
4
4
15
1.12
12206--12316
23
4.8
23
71
13
86
73
4
2
18
1.12
12428--12463
17
2.1
17
89
0
54
83
0
5
11
0.80
12428--12472
20
2.2
20
81
11
56
82
0
4
13
0.82
12416--12472
23
2.5
22
80
8
53
78
1
5
14
0.99
14192--14263
31
2.4
31
88
9
105
18
16
23
41
1.89
18532--18591
29
2.0
31
90
6
97
35
6
16
41
1.75
18656--18722
19
3.5
19
75
6
64
37
10
13
38
1.79
18828--18869
21
2.0
21
90
0
66
26
21
26
26
1.99
18898--18937
20
1.9
21
85
10
55
37
37
10
15
1.80
22015--22074
29
2.0
31
90
6
97
35
6
16
41
1.75
22139--22205
19
3.5
19
75
6
64
37
10
13
38
1.79
22236--22275
21
1.9
21
94
0
71
20
40
27
12
1.88
22300--22339
20
1.9
21
85
10
55
37
37
10
15
1.80
22555--22624
34
2.1
32
89
5
104
31
15
31
21
1.95
27614--27739
32
3.9
32
78
4
137
29
18
16
35
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27613--27740
64
2.0
64
84
3
168
30
17
16
35
1.93
31057--31278
44
4.9
45
90
3
324
40
7
20
31
1.80
31881--31905
11
2.3
11
100
0
50
52
8
0
40
1.31
37619--37692
19
3.8
19
84
13
105
31
9
18
40
1.83
40909--41130
45
4.9
45
75
6
225
39
14
19
26
1.90
40909--41128
90
2.4
90
87
1
298
39
14
20
26
1.90
47128--47505
179
2.1
178
81
5
435
40
10
10
38
1.74
47329--48117
419
1.9
412
84
8
1062
38
9
7
44
1.65
53166--53346
2
92.5
2
66
18
60
38
1
6
53
1.34
53165--53266
29
3.5
30
80
12
90
38
0
5
54
1.31
53196--53429
7
31.9
7
67
17
59
38
1
6
53
1.37
53196--53341
27
5.5
27
74
17
94
39
0
6
54
1.31
53251--53422
69
2.4
69
75
15
156
38
2
6
52
1.41
54300--54826
263
2.0
263
91
2
844
35
13
19
32
1.90
55501--55533
14
2.4
14
94
0
57
48
6
0
45
1.27
56005--56361
65
5.7
59
83
6
215
30
23
14
30
1.94
56040--56470
195
2.2
195
85
3
564
31
22
14
30
1.94
56042--56470
65
6.6
65
83
3
468
31
22
14
31
1.94
56366--56746
189
2.0
189
95
0
681
33
17
10
38
1.84
56784--56818
17
2.1
17
94
0
61
37
17
5
40
1.73
59926--59974
21
2.2
24
85
10
68
18
8
8
65
1.44
63959--64002
23
1.9
23
85
0
61
22
27
20
29
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63968--64017
23
2.2
23
82
7
57
20
28
22
30
1.98
67219--67271
13
4.1
13
80
0
61
24
16
22
35
1.95
67219--67271
26
2.0
26
88
0
79
24
16
22
35
1.95

Tables:   1

The End!