genome.fa.s6268.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006268.1 Hibiscus syriacus cultivar Beakdansim tig00014947_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105218

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43--275	20	12.1	19	77	13	167	39	24	15	20	1.91
55--227	20	8.9	20	83	7	205	39	24	15	20	1.91
43--227	76	2.4	78	88	3	275	40	24	15	19	1.91
55--275	58	3.8	58	82	10	222	39	23	15	21	1.91
2903--3000	21	4.7	21	74	10	85	25	34	18	21	1.96
2899--3019	42	3.0	42	77	13	119	23	36	18	21	1.95
4358--4500	65	2.2	65	90	3	218	30	0	17	51	1.50
4557--4594	20	1.9	20	88	0	58	39	23	21	15	1.92
4655--4693	20	2.0	20	94	0	69	17	20	23	38	1.93
4905--4993	39	2.3	39	92	0	142	19	13	20	47	1.82
5302--5338	18	2.1	18	89	0	56	51	10	5	32	1.60
5763--5804	20	2.1	20	90	0	66	40	19	21	19	1.92
5813--5855	20	2.2	20	95	0	77	13	16	25	44	1.85
6141--6176	18	2.0	18	94	0	63	16	2	25	55	1.55
8438--8497	24	2.5	24	77	0	66	36	21	16	25	1.94
9185--9222	16	2.5	15	84	12	51	65	0	5	28	1.14
9385--9489	19	5.4	19	80	7	104	25	12	21	40	1.89
9385--9489	40	2.7	39	82	7	115	25	12	21	40	1.89
9398--9568	60	2.9	60	80	12	169	21	15	23	39	1.92
9398--9511	20	5.8	20	84	9	128	21	14	23	39	1.91
9436--9511	39	1.9	40	91	2	127	18	15	26	39	1.91
9517--9560	20	2.2	20	95	0	79	20	18	25	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14843--14925	3	27.7	3	80	4	51	31	45	1	21	1.60
14861--14922	6	10.8	6	83	10	58	32	50	0	17	1.47
14843--14925	12	6.7	12	76	12	69	31	45	1	21	1.60
15899--16019	52	2.3	52	83	4	138	28	2	32	36	1.71
17336--17384	26	1.9	25	83	4	62	67	6	0	26	1.14
17842--17988	4	36.8	4	73	10	122	67	3	2	27	1.18
17842--18009	23	7.7	23	77	15	146	67	4	1	26	1.19
17846--17982	39	3.4	38	79	8	132	67	3	2	27	1.19
18592--18759	86	2.0	86	86	2	239	33	22	14	29	1.93
27419--27464	24	1.9	24	100	0	92	36	15	8	39	1.78
28384--28431	23	2.0	24	96	4	89	33	12	10	43	1.77
34177--34651	251	1.9	251	95	0	869	38	7	19	35	1.79
37325--37413	45	2.0	45	95	0	160	34	10	19	35	1.85
46457--46501	18	2.5	18	81	0	54	17	6	11	64	1.46
49375--49427	16	3.1	16	75	15	52	39	9	0	50	1.35
59062--59209	74	2.0	75	81	4	174	35	12	10	42	1.76
59418--59516	21	4.8	20	72	6	72	36	23	19	21	1.95
59484--59712	20	11.4	20	82	5	239	37	25	17	19	1.94
60625--60649	12	2.1	12	100	0	50	72	0	28	0	0.86
62945--63173	53	4.2	53	84	9	241	45	17	22	14	1.85
62945--63173	19	12.7	19	79	15	272	45	17	22	14	1.85
62945--63173	72	3.2	73	80	14	294	45	17	22	14	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62931--63151	91	2.5	87	86	9	320	46	17	22	14	1.84
63182--63227	19	2.3	20	96	3	85	15	21	17	45	1.85
63191--63235	20	2.3	19	88	3	63	17	22	15	44	1.86
63334--63370	14	2.6	14	91	0	65	45	21	0	32	1.52
65294--65485	19	10.6	19	80	11	179	45	24	19	9	1.81
65310--65480	33	4.8	35	83	9	197	47	23	19	8	1.78
65407--65463	14	3.7	14	75	20	51	43	22	22	10	1.84
65497--65555	14	3.9	14	76	20	64	6	16	28	47	1.72
65481--65575	33	2.9	33	93	0	163	7	16	28	47	1.74
65481--65609	19	7.3	19	76	17	134	8	16	28	46	1.76
65558--65615	20	3.0	20	82	2	55	15	13	25	44	1.83
67535--67631	20	5.2	20	75	18	109	47	17	23	11	1.80
67533--67597	21	3.1	21	86	4	105	49	15	24	10	1.76
67582--67638	14	3.7	14	75	20	60	43	22	24	8	1.81
67533--67655	33	3.5	33	90	8	165	47	18	23	10	1.80
67672--67728	14	3.7	14	75	20	60	8	24	22	43	1.81
67656--67736	33	2.5	33	95	0	144	8	22	22	46	1.78
67713--67789	21	3.7	21	80	13	104	11	23	16	48	1.79
67869--67939	33	2.2	33	97	0	133	47	18	23	9	1.78
67891--67939	14	2.8	19	65	28	54	46	20	24	8	1.77
67873--67929	14	3.7	14	70	20	51	45	21	24	8	1.80
68308--68500	20	9.6	20	84	5	237	17	19	27	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68308--68500	60	3.2	60	87	2	271	17	19	27	35	1.94
70353--70390	15	2.5	15	87	8	51	52	2	7	36	1.45
71164--71261	45	2.2	45	90	0	151	23	15	38	22	1.92
71507--71800	39	7.7	39	85	3	384	21	26	12	40	1.88
71507--71800	78	3.8	78	87	4	429	21	26	12	40	1.88
71507--71800	114	2.6	114	88	1	417	21	26	12	40	1.88
71805--72064	73	3.6	72	87	3	387	40	11	14	33	1.82
71931--72057	36	3.5	35	72	11	112	43	11	14	29	1.82
73167--73270	54	1.9	54	94	0	181	25	25	14	34	1.94
77178--77212	18	1.9	18	94	0	61	71	5	5	17	1.25
80659--80753	45	2.1	45	96	0	172	23	15	37	23	1.93
85971--86039	23	3.0	23	86	0	93	27	26	24	21	1.99
87080--87129	2	25.0	2	100	0	100	50	0	0	50	1.00
91125--91185	23	2.7	23	89	0	95	31	26	21	21	1.98
92234--92263	2	15.0	2	100	0	60	50	0	0	50	1.00
92420--92462	18	2.4	18	84	7	52	51	11	2	34	1.51
96724--96764	21	2.0	21	85	9	57	41	12	4	41	1.64
98309--98361	20	2.7	20	87	0	70	33	15	28	22	1.94
98773--98886	55	2.0	57	90	6	180	35	14	21	28	1.92
98788--98916	55	2.3	55	86	4	170	41	11	17	29	1.84
99097--99293	68	2.9	68	93	2	324	32	16	23	27	1.96
104291--104337	14	3.4	14	88	11	62	0	19	2	78	0.85

Tables:   1

The End!