Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006269.1 Hibiscus syriacus cultivar Beakdansim tig00014948_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80758

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
531--630
28
3.4
28
68
14
76
70
5
8
17
1.30
2350--2419
31
2.4
29
79
13
81
65
1
1
31
1.10
2419--2544
34
3.8
33
76
18
102
44
6
3
46
1.45
2529--2554
2
13.0
2
100
0
52
50
0
0
50
1.00
2581--2694
37
3.1
37
87
8
160
48
7
1
42
1.42
2585--2776
75
2.6
74
75
16
175
45
7
2
43
1.46
2656--2719
26
2.5
26
86
0
92
46
7
1
43
1.42
2627--2752
63
2.0
64
86
10
177
46
7
1
44
1.40
2696--2791
47
2.0
48
87
2
140
44
6
4
44
1.48
4830--4899
30
2.2
30
85
12
88
65
4
8
21
1.37
7640--7673
17
2.0
17
100
0
68
35
23
23
17
1.95
13566--13618
23
2.3
24
81
12
67
56
9
16
16
1.65
18930--18976
21
2.2
21
96
0
85
34
0
0
65
0.93
19282--19327
24
2.0
24
82
4
58
34
10
2
52
1.49
20542--20572
16
1.9
16
100
0
62
58
22
12
6
1.58
20637--20679
10
4.7
10
78
21
58
58
20
11
9
1.61
20641--20673
16
2.1
16
100
0
66
57
24
12
6
1.57
21902--21968
33
2.2
29
78
19
75
29
17
26
25
1.98
22193--22254
24
2.6
24
86
0
88
53
22
11
12
1.71
23790--23865
2
38.0
2
100
0
152
50
0
0
50
1.00
29121--29194
2
38.5
2
76
12
66
44
2
0
52
1.15
30437--30488
20
2.5
21
78
12
54
13
11
5
69
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30504--30551
25
2.0
25
91
4
80
18
8
4
68
1.31
30625--30651
12
2.2
12
100
0
54
7
14
0
77
0.97
31655--31700
21
2.2
20
84
3
56
19
6
0
73
1.04
33942--33970
13
2.2
13
100
0
58
20
6
6
65
1.40
41158--41197
7
5.7
7
81
0
53
80
0
15
5
0.88
43076--43146
16
4.2
16
73
10
61
40
5
0
53
1.24
45743--45799
19
2.9
21
68
24
52
19
3
3
73
1.12
47124--47173
24
2.1
24
85
7
66
60
12
2
26
1.43
56884--56917
17
2.1
16
88
5
50
76
0
8
14
1.01
57392--57441
24
2.1
24
88
7
75
60
10
2
28
1.40
61140--61165
8
3.2
8
100
0
52
76
0
11
11
1.01
68913--69069
37
4.0
38
87
8
226
25
15
17
41
1.89
68912--69071
42
4.0
42
89
10
255
25
15
18
40
1.89
68917--69069
79
2.0
76
94
3
270
25
15
17
41
1.88
75042--75093
26
2.0
27
88
3
79
38
9
13
38
1.77
75129--75204
31
2.5
31
72
12
75
42
10
9
38
1.71
77604--77908
168
1.8
167
94
2
540
45
11
16
27
1.81
80589--80635
20
2.4
19
89
10
76
55
10
17
17
1.69
80382--80754
181
2.1
176
84
5
475
42
13
16
27
1.86

Tables:   1

The End!