Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000627.1 Hibiscus syriacus cultivar Beakdansim tig00001216_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50480

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1108--1160
4
12.8
4
79
15
54
75
3
1
18
1.05
1270--1310
22
1.9
22
85
14
59
48
7
14
29
1.71
1265--1316
22
2.5
20
76
14
52
51
5
11
30
1.61
1414--1616
106
1.9
107
85
5
284
43
14
16
25
1.86
2286--2346
26
2.3
26
88
0
86
22
21
26
29
1.99
6679--6717
20
2.0
20
85
10
53
30
5
7
56
1.49
13037--13092
26
2.2
26
83
0
67
55
3
12
28
1.54
15217--15328
29
3.9
29
92
0
188
19
41
27
10
1.85
15342--15434
10
9.3
10
70
17
68
22
47
19
10
1.80
15352--15454
30
3.4
30
89
0
170
23
47
18
10
1.79
16069--16112
21
2.1
21
91
0
70
29
0
15
54
1.42
16089--16142
28
1.9
28
96
0
99
29
0
12
57
1.36
19255--19402
11
12.6
11
69
20
52
39
0
14
45
1.46
19202--19684
60
8.2
60
90
7
762
39
0
14
45
1.46
19315--19403
21
4.4
20
64
17
58
40
0
14
44
1.45
19435--19582
10
14.7
10
68
21
51
39
0
15
43
1.52
19631--19700
25
3.1
22
79
16
63
38
0
11
50
1.39
19566--19680
48
2.3
49
92
2
187
40
0
11
47
1.39
19652--19699
14
3.6
14
81
16
66
35
0
16
47
1.47
19772--19798
7
3.9
7
100
0
54
55
14
14
14
1.70
19907--19971
14
5.2
13
75
17
50
38
7
7
46
1.61
19918--19951
11
3.2
11
83
8
52
38
8
5
47
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19918--19961
21
2.1
21
86
0
61
40
9
4
45
1.56
19956--19988
17
1.9
17
100
0
66
36
6
9
48
1.60
22135--22165
15
2.1
14
94
5
53
54
6
0
38
1.26
22140--22186
16
3.0
16
84
9
53
59
10
0
29
1.31
22221--22302
34
2.5
34
84
9
100
48
12
0
39
1.41
22283--22335
12
4.3
12
84
11
63
52
16
0
30
1.44
22362--22452
44
2.0
48
85
12
129
48
10
0
40
1.38
22433--22521
41
2.2
40
78
8
90
46
10
1
42
1.45
22557--22595
16
2.3
18
86
8
55
56
5
0
38
1.22
22807--22913
49
2.2
48
91
6
173
22
18
38
20
1.94
22934--23010
29
2.7
29
100
0
154
23
32
31
12
1.92
23034--23150
52
2.2
52
86
3
155
11
20
34
33
1.89
23092--23129
19
2.0
19
100
0
76
10
21
36
31
1.87
32833--32880
18
2.7
17
81
9
60
47
2
2
47
1.25
41789--41830
15
2.7
16
81
3
50
47
2
2
47
1.28
45968--46007
21
1.9
21
90
10
64
35
20
17
27
1.95
45996--46050
27
2.0
27
100
0
110
23
14
10
50
1.74
48255--48339
24
3.7
23
81
4
100
22
24
23
29
1.99

Tables:   1

The End!