Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006270.1 Hibiscus syriacus cultivar Beakdansim tig00014949_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 949592
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
File 4 of 5
Found at i:685484 original size:21 final size:22
Alignment explanation
Indices: 685460--685501 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 22
685450 CATACCCCGA
685460 GCTAGTTAAGTAGAGT-ATCCC
1 GCTAGTTAAGTAGAGTCATCCC
685481 GCTAGTTAAGTAGAGTCATCC
1 GCTAGTTAAGTAGAGTCATCC
685502 GTGACTACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (22 bp):
GCTAGTTAAGTAGAGTCATCCC
Found at i:687223 original size:20 final size:18
Alignment explanation
Indices: 687193--687247 Score: 56
Period size: 20 Copynumber: 2.9 Consensus size: 18
687183 TGAGAGATAA
*
687193 AAAGTAAAAGTTAAAAATG
1 AAAGAAAAAGTTAAAAA-G
* *
687212 AAATAGAAAAGTTAAGGAAG
1 AAAGA-AAAAGTTAA-AAAG
687232 AAAGAAAAAGTTAAAA
1 AAAGAAAAAGTTAAAA
687248 GTTTAAGAGG
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
18 1 0.03
19 12 0.41
20 14 0.48
21 2 0.07
ACGTcount: A:0.65, C:0.00, G:0.18, T:0.16
Consensus pattern (18 bp):
AAAGAAAAAGTTAAAAAG
Found at i:693501 original size:11 final size:11
Alignment explanation
Indices: 693485--693509 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
693475 AGAATGGTAA
693485 AAACAGTAAAT
1 AAACAGTAAAT
693496 AAACAGTAAAT
1 AAACAGTAAAT
693507 AAA
1 AAA
693510 ATGAAAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.08, G:0.08, T:0.16
Consensus pattern (11 bp):
AAACAGTAAAT
Found at i:694027 original size:23 final size:23
Alignment explanation
Indices: 694001--694050 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
693991 ATAAAGAACC
*
694001 AAAATAAACT-TAAATATACCATT
1 AAAATAAACTCTAAACAT-CCATT
*
694024 AAAATAAAGTCTAAACATCCATT
1 AAAATAAACTCTAAACATCCATT
694047 AAAA
1 AAAA
694051 CCAACTACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 18 0.75
24 6 0.25
ACGTcount: A:0.58, C:0.14, G:0.02, T:0.26
Consensus pattern (23 bp):
AAAATAAACTCTAAACATCCATT
Found at i:695413 original size:2 final size:2
Alignment explanation
Indices: 695367--695404 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
695357 CAATATTAAA
695367 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
695405 CCTTATATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:695634 original size:13 final size:13
Alignment explanation
Indices: 695616--695658 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
695606 ATTTCAGAAC
695616 TTTCATATTTCAT
1 TTTCATATTTCAT
* *
695629 TTTCATCTTTCAC
1 TTTCATATTTCAT
*
695642 TTTCACA-TTCAT
1 TTTCATATTTCAT
695654 TTTCA
1 TTTCA
695659 CATCTCTTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
12 9 0.36
13 16 0.64
ACGTcount: A:0.21, C:0.23, G:0.00, T:0.56
Consensus pattern (13 bp):
TTTCATATTTCAT
Found at i:695748 original size:19 final size:19
Alignment explanation
Indices: 695706--695789 Score: 80
Period size: 19 Copynumber: 4.4 Consensus size: 19
695696 ATTCATTCTC
* * *
695706 GATTCAAAACTTATATCCA
1 GATTCATAACTTATTTTCA
*
695725 AATTCATAACTTATTTTCA
1 GATTCATAACTTATTTTCA
*
695744 GATTCATAGCTTACTTTT-A
1 GATTCATAACTTA-TTTTCA
* *
695763 GATTCATATCTTAATTTCA
1 GATTCATAACTTATTTTCA
*
695782 AATTCATA
1 GATTCATA
695790 TCCCAATGCA
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
18 3 0.06
19 47 0.87
20 4 0.07
ACGTcount: A:0.36, C:0.17, G:0.05, T:0.43
Consensus pattern (19 bp):
GATTCATAACTTATTTTCA
Found at i:701618 original size:112 final size:111
Alignment explanation
Indices: 701419--701634 Score: 317
Period size: 112 Copynumber: 1.9 Consensus size: 111
701409 ACCGAAGTGC
* *
701419 CGAAATGGTAATTCACCTCATTATGAATACCATGGGTGGCACCATTTATTCAGAAAATGCACCGT
1 CGAAATAGTAATTCACCTCATTATGAATACCATGGGTGGCACCATTTATTCAGAAAATGCACCAT
* * * *
701484 TATACATTTAGCAAAATTGATCGATAACTTTCATACACAATGTATAT
66 TATACATTAAACAAAATCGATCGAT-ACTATCATACACAATGTATAT
* * *
701531 CGAAATAGTAATTCACCTCATTATGAATACCATGTGTGGCATCTTTTATGTC-GAAAATGCACCA
1 CGAAATAGTAATTCACCTCATTATGAATACCATGGGTGGCACCATTTAT-TCAGAAAATGCACCA
*
701595 TTATGCATTAAACAAAATCGATCGATACTATCATACACAA
65 TTATACATTAAACAAAATCGATCGATACTATCATACACAA
701635 AGTTTGTCGA
Statistics
Matches: 93, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
111 13 0.14
112 78 0.84
113 2 0.02
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (111 bp):
CGAAATAGTAATTCACCTCATTATGAATACCATGGGTGGCACCATTTATTCAGAAAATGCACCAT
TATACATTAAACAAAATCGATCGATACTATCATACACAATGTATAT
Found at i:703038 original size:24 final size:24
Alignment explanation
Indices: 702985--703039 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
702975 CATTCATATT
* *
702985 CATTTATGTTCATTCTTTTTTGTT
1 CATTTATGTTCATTCGTTTTTGTC
** *
703009 TGTTTATGTTCGTTCGTTTTTGTC
1 CATTTATGTTCATTCGTTTTTGTC
703033 CATTTAT
1 CATTTAT
703040 CATTTTAACA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.11, C:0.13, G:0.13, T:0.64
Consensus pattern (24 bp):
CATTTATGTTCATTCGTTTTTGTC
Found at i:704326 original size:13 final size:13
Alignment explanation
Indices: 704308--704332 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
704298 TTACAACCCG
704308 ACCCGACCCGTTT
1 ACCCGACCCGTTT
704321 ACCCGACCCGTT
1 ACCCGACCCGTT
704333 GATCGTTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.48, G:0.16, T:0.20
Consensus pattern (13 bp):
ACCCGACCCGTTT
Found at i:704411 original size:49 final size:49
Alignment explanation
Indices: 704339--704433 Score: 181
Period size: 49 Copynumber: 1.9 Consensus size: 49
704329 CGTTGATCGT
*
704339 TGATCGGTGTTGACTAATGTTGACCAAAACTTTGACCGGCTTTGACCGG
1 TGATCGGCGTTGACTAATGTTGACCAAAACTTTGACCGGCTTTGACCGG
704388 TGATCGGCGTTGACTAATGTTGACCAAAACTTTGACCGGCTTTGAC
1 TGATCGGCGTTGACTAATGTTGACCAAAACTTTGACCGGCTTTGAC
704434 TGGGCATTCA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (49 bp):
TGATCGGCGTTGACTAATGTTGACCAAAACTTTGACCGGCTTTGACCGG
Found at i:707241 original size:42 final size:42
Alignment explanation
Indices: 707176--707337 Score: 200
Period size: 42 Copynumber: 3.8 Consensus size: 42
707166 ACCGTTACAG
* *
707176 CAGGTCCCTTTGCTGTGAGCAAGGGTAAGCCTTATAGTTTCC
1 CAGGTTCCTTTGCTGTGTGCAAGGGTAAGCCTTATAGTTTCC
* *
707218 TAGGTTCCTTTGTTGTGTGCAAGGGTAAGCCTTATAGTTTCC
1 CAGGTTCCTTTGCTGTGTGCAAGGGTAAGCCTTATAGTTTCC
* * *
707260 CCGGTTCCTTTGTTGTGTGCAAGGGTAAGCCTTA-GGTTTCCC
1 CAGGTTCCTTTGCTGTGTGCAAGGGTAAGCCTTATAGTTT-CC
* * * *
707302 CAGGCTCTTTTGCTATGTGCAAGGATAAGACCTTAT
1 CAGGTTCCTTTGCTGTGTGCAAGGGTAAG-CCTTAT
707338 CATTTTTGCA
Statistics
Matches: 104, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
41 4 0.04
42 95 0.91
43 5 0.05
ACGTcount: A:0.18, C:0.21, G:0.26, T:0.35
Consensus pattern (42 bp):
CAGGTTCCTTTGCTGTGTGCAAGGGTAAGCCTTATAGTTTCC
Found at i:712142 original size:42 final size:42
Alignment explanation
Indices: 712083--712244 Score: 209
Period size: 42 Copynumber: 3.8 Consensus size: 42
712073 ACCGTTACAG
* *
712083 CAGGTCCCTTTGTTGTGTGCAAGGGTAAGCCTTATAGTTTCC
1 CAGGTCCCTTTGCTGTGTGCAAGGGTAAGCCTTACAGTTTCC
* *
712125 CAGGTTCCTTTGTTGTGTGCAAGGGTAAGCCTTACAGTTTCC
1 CAGGTCCCTTTGCTGTGTGCAAGGGTAAGCCTTACAGTTTCC
* *
712167 TAGGTCCCTTTGCTGTGTGCAAGGGTAAGTCTTACAGTTTCCC
1 CAGGTCCCTTTGCTGTGTGCAAGGGTAAGCCTTACAGTTT-CC
* * *
712210 CAGG-CTCTTTTGCTATGTGCAAGGATAAGACCTTA
1 CAGGTC-CCTTTGCTGTGTGCAAGGGTAAG-CCTTA
712245 TCATTTTTGC
Statistics
Matches: 106, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
42 77 0.73
43 25 0.24
44 4 0.04
ACGTcount: A:0.19, C:0.22, G:0.25, T:0.35
Consensus pattern (42 bp):
CAGGTCCCTTTGCTGTGTGCAAGGGTAAGCCTTACAGTTTCC
Found at i:713808 original size:29 final size:29
Alignment explanation
Indices: 713736--713955 Score: 201
Period size: 29 Copynumber: 7.6 Consensus size: 29
713726 TCTATTTTTA
* * * *
713736 TAAATATTACAATAAAGACTAAAACTTTTT
1 TAAAAATTACAATAAATACCAAAAC-TTTC
* *
713766 TATAAATTACAATAAATACCCAAACTTTC
1 TAAAAATTACAATAAATACCAAAACTTTC
* * * * *
713795 TATAAATTATAATAGATACCAAACCTTTT
1 TAAAAATTACAATAAATACCAAAACTTTC
** * *
713824 TATTAGTTAAAATAAATACCAAAACTTTC
1 TAAAAATTACAATAAATACCAAAACTTTC
* * *
713853 CAAAAATTACAATAAATATCAAAACTTTT
1 TAAAAATTACAATAAATACCAAAACTTTC
*
713882 TAAAAATTATAATAAATACCAAAACTTTC
1 TAAAAATTACAATAAATACCAAAACTTTC
* * *
713911 TAAAAACTACAATAAACACCAAAAAGCTTAC
1 TAAAAATTACAATAAATACC-AAAA-CTTTC
713942 T--AAATTACAATAAA
1 TAAAAATTACAATAAA
713956 AAAACTTATC
Statistics
Matches: 155, Mismatches: 33, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
29 126 0.81
30 24 0.15
31 5 0.03
ACGTcount: A:0.52, C:0.15, G:0.02, T:0.31
Consensus pattern (29 bp):
TAAAAATTACAATAAATACCAAAACTTTC
Found at i:713934 original size:58 final size:58
Alignment explanation
Indices: 713736--713934 Score: 236
Period size: 58 Copynumber: 3.4 Consensus size: 58
713726 TCTATTTTTA
* * * * *
713736 TAAATATTACAATAAAGACTAAAACTTTTTTATAAATTACAATAAATACCCAAACTTTC
1 TAAAAATTACAATAAATACCAAAAC-TTTTTATAAATTAAAATAAATACCAAAACTTTC
* * * * * *
713795 TATAAATTATAATAGATACCAAACCTTTTTATTAGTTAAAATAAATACCAAAACTTTC
1 TAAAAATTACAATAAATACCAAAACTTTTTATAAATTAAAATAAATACCAAAACTTTC
* * * *
713853 CAAAAATTACAATAAATATCAAAACTTTTTAAAAATTATAATAAATACCAAAACTTTC
1 TAAAAATTACAATAAATACCAAAACTTTTTATAAATTAAAATAAATACCAAAACTTTC
* *
713911 TAAAAACTACAATAAACACCAAAA
1 TAAAAATTACAATAAATACCAAAA
713935 AGCTTACTAA
Statistics
Matches: 115, Mismatches: 25, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
58 97 0.84
59 18 0.16
ACGTcount: A:0.52, C:0.15, G:0.02, T:0.31
Consensus pattern (58 bp):
TAAAAATTACAATAAATACCAAAACTTTTTATAAATTAAAATAAATACCAAAACTTTC
Found at i:716617 original size:22 final size:22
Alignment explanation
Indices: 716569--716623 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
716559 ACTATATAAC
* *
716569 ATATATTATATTTTCAAAAACT
1 ATATAATATATTTTCAAAAAAT
*
716591 ATATAATATGTTTTCAACAAAAT
1 ATATAATATATTTTCAA-AAAAT
716614 -TAT-ATATATT
1 ATATAATATATT
716624 ATATATGCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
21 6 0.21
22 18 0.64
23 4 0.14
ACGTcount: A:0.45, C:0.07, G:0.02, T:0.45
Consensus pattern (22 bp):
ATATAATATATTTTCAAAAAAT
Found at i:716688 original size:25 final size:26
Alignment explanation
Indices: 716643--716707 Score: 80
Period size: 25 Copynumber: 2.5 Consensus size: 26
716633 TTCAAAAGTC
* *
716643 GTTTTTAAAACTATATATATATATAT
1 GTTTTCAAAACTATATATATATACAT
*
716669 GTTTTCAAAACTATAT-TATATACGT
1 GTTTTCAAAACTATATATATATACAT
716694 -TTTTCAAAAACTAT
1 GTTTTC-AAAACTAT
716708 TTTTTAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
24 5 0.14
25 15 0.43
26 15 0.43
ACGTcount: A:0.40, C:0.09, G:0.05, T:0.46
Consensus pattern (26 bp):
GTTTTCAAAACTATATATATATACAT
Found at i:716735 original size:39 final size:38
Alignment explanation
Indices: 716670--716764 Score: 106
Period size: 37 Copynumber: 2.5 Consensus size: 38
716660 TATATATATG
* *
716670 TTTTCAAAACTATAT-TATATACGTTTTTCAAAAACTAT-T
1 TTTTAAAAACTATATATATATACG-TTTT-AAAAA-AATGT
*
716709 TTTTAAAAACTATATAT-TATATGTTTTAAAAAAATGT
1 TTTTAAAAACTATATATATATACGTTTTAAAAAAATGT
*
716746 TTTAAAAAACTATATATAT
1 TTTTAAAAACTATATATAT
716765 TTTTAAAAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
36 2 0.04
37 22 0.45
38 5 0.10
39 19 0.39
40 1 0.02
ACGTcount: A:0.44, C:0.07, G:0.03, T:0.45
Consensus pattern (38 bp):
TTTTAAAAACTATATATATATACGTTTTAAAAAAATGT
Found at i:716754 original size:12 final size:13
Alignment explanation
Indices: 716729--716754 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
716719 TATATATTAT
716729 ATGTTTTAAAAAA
1 ATGTTTTAAAAAA
716742 ATGTTTTAAAAAA
1 ATGTTTTAAAAAA
716755 CTATATATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (13 bp):
ATGTTTTAAAAAA
Found at i:726692 original size:12 final size:12
Alignment explanation
Indices: 726675--726705 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
726665 GTAAGATACA
726675 AAAATAATAATC
1 AAAATAATAATC
*
726687 AAAATAATAATG
1 AAAATAATAATC
726699 AAAATAA
1 AAAATAA
726706 AATTTCCTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.23
Consensus pattern (12 bp):
AAAATAATAATC
Found at i:730391 original size:90 final size:90
Alignment explanation
Indices: 730281--730445 Score: 296
Period size: 90 Copynumber: 1.8 Consensus size: 90
730271 TTAATTTCAT
*
730281 TTAATTAAATATAGATTTAATTATTTTGAAATAATA-AAATCCCTAATATGATTAGGGTAACTTG
1 TTAATTAAATATAGATTTAATTAATTTGAAATAATAGAAA-CCCTAATATGATTAGGGTAACTTG
730345 GATATAAAAGGATTACAAAATTCCAA
65 GATATAAAAGGATTACAAAATTCCAA
730371 TTAATTAAATATAGATTTAATTAATTTGAAATAATAGAAACCCTAATATGATTAGGGTAACTTGG
1 TTAATTAAATATAGATTTAATTAATTTGAAATAATAGAAACCCTAATATGATTAGGGTAACTTGG
*
730436 CTATAAAAGG
66 ATATAAAAGG
730446 GTGTGTTAGG
Statistics
Matches: 72, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
90 69 0.96
91 3 0.04
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.35
Consensus pattern (90 bp):
TTAATTAAATATAGATTTAATTAATTTGAAATAATAGAAACCCTAATATGATTAGGGTAACTTGG
ATATAAAAGGATTACAAAATTCCAA
Found at i:736384 original size:21 final size:21
Alignment explanation
Indices: 736358--736399 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
736348 GCATTAAGGT
736358 TTTTGTAGACGCCATGAATTC
1 TTTTGTAGACGCCATGAATTC
* *
736379 TTTTGTCGAGGCCATGAATTC
1 TTTTGTAGACGCCATGAATTC
736400 CTACAAGGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.38
Consensus pattern (21 bp):
TTTTGTAGACGCCATGAATTC
Found at i:747248 original size:58 final size:59
Alignment explanation
Indices: 747158--747273 Score: 171
Period size: 58 Copynumber: 2.0 Consensus size: 59
747148 GATAGATAAG
* * * *
747158 TGTCCTATCAAACCCTCTTAGTCATAATGAAAA-GAAAACTCGATAATATGGGTCTAAA
1 TGTCCTATCAAACCCTCCTAGTCACAATGAAAAGGAAAACTCAATAATATGGATCTAAA
* *
747216 TGTCCTATCGAACCCTCCTAGTCACAATGAAAAGGTAAACTCAATAATATGGATCTAA
1 TGTCCTATCAAACCCTCCTAGTCACAATGAAAAGGAAAACTCAATAATATGGATCTAA
747274 CCAACCCTTC
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
58 30 0.59
59 21 0.41
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.27
Consensus pattern (59 bp):
TGTCCTATCAAACCCTCCTAGTCACAATGAAAAGGAAAACTCAATAATATGGATCTAAA
Found at i:751006 original size:18 final size:18
Alignment explanation
Indices: 750994--751047 Score: 108
Period size: 18 Copynumber: 3.0 Consensus size: 18
750984 TTTTTTGAAT
750994 TTTTTCATCTTTTTTGGC
1 TTTTTCATCTTTTTTGGC
751012 TTTTTCATCTTTTTTGGC
1 TTTTTCATCTTTTTTGGC
751030 TTTTTCATCTTTTTTGGC
1 TTTTTCATCTTTTTTGGC
751048 AAAAAAATAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.06, C:0.17, G:0.11, T:0.67
Consensus pattern (18 bp):
TTTTTCATCTTTTTTGGC
Found at i:763377 original size:29 final size:29
Alignment explanation
Indices: 763343--763418 Score: 102
Period size: 29 Copynumber: 2.6 Consensus size: 29
763333 ACATTCGTTG
763343 TAAAGAAAAAAAATGAAACAAATGT-AAAAA
1 TAAAGAAAAAAAA-GAAA-AAATGTGAAAAA
763373 -AAAGAAAAAAAAGAAAAAATGTGAAAAA
1 TAAAGAAAAAAAAGAAAAAATGTGAAAAA
*
763401 TAAAGAAAGAGAAAGAAA
1 TAAAGAAA-AAAAAGAAA
763419 TGAAAAAGAA
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
27 6 0.14
28 9 0.21
29 19 0.45
30 8 0.19
ACGTcount: A:0.75, C:0.01, G:0.14, T:0.09
Consensus pattern (29 bp):
TAAAGAAAAAAAAGAAAAAATGTGAAAAA
Found at i:763382 original size:8 final size:9
Alignment explanation
Indices: 763344--763430 Score: 66
Period size: 10 Copynumber: 8.9 Consensus size: 9
763334 CATTCGTTGT
763344 AAAGAAAAA
1 AAAGAAAAA
*
763353 AAATGAAACA
1 AAA-GAAAAA
*
763363 AATGTAAAAA
1 AAAG-AAAAA
763373 AAAGAAAAA
1 AAAGAAAAA
763382 AAAGAAAAA
1 AAAGAAAAA
**
763391 ATGTGAAAAA
1 A-AAGAAAAA
*
763401 TAAAGAAAGAG
1 -AAAGAAA-AA
763412 AAAGAAATGAA
1 AAAGAAA--AA
763423 AAAGAAAA
1 AAAGAAAA
763431 GGACCCAATG
Statistics
Matches: 62, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
9 20 0.32
10 31 0.50
11 11 0.18
ACGTcount: A:0.76, C:0.01, G:0.15, T:0.08
Consensus pattern (9 bp):
AAAGAAAAA
Found at i:764120 original size:118 final size:116
Alignment explanation
Indices: 763939--764256 Score: 266
Period size: 117 Copynumber: 2.7 Consensus size: 116
763929 TCGTCCGATA
* * * ** * * *
763939 AGGGAGAAAAAGTTCATAATGAGAAAGACTTTTTCAACCTTTATTCAAATTCATTATAGAATGAG
1 AGGGAG-AAAAGTTTAAAATGAGAAA-ACTTGTTCAACCTTTGCTCAAATCCATCATATAATGAG
* * ** * *
764004 GTTGATTAACATTTCCAA-AGACAGGGTTCATAATGAGAATAACTAATAAGTTG
64 GTCGATTAACATTTCCAATA-AAAGGGTTCATAACAAGAAAAACTAATAAGATG
* * *
764057 AGGGAGAAGAAGTTTAAAATAAGAAGAACTTGTTCAACCTTTGCTCAAATCCATCACATAATGAA
1 AGGGAGAA-AAGTTTAAAATGAGAA-AACTTGTTCAACCTTTGCTCAAATCCATCATATAATGAG
* * * * **
764122 ATGGATCAACAGTTT--AATAAAAGGGTTCATAACAAGAAAAACTCATCTGATG
64 GTCGATTAACA-TTTCCAATAAAAGGGTTCATAACAAGAAAAACTAATAAGATG
* * * *
764174 ATGGAGAAAAGTTTGTAAA-GAGAAAAACTTGTTCAACCTTTCGCTCAGATCCATCATATAAGGA
1 AGGGAGAAAAGTTT-AAAATGAG-AAAACTTGTTCAACCTTT-GCTCAAATCCATCATATAATGA
* *
764238 GGTCGATTAGCACTTCCAA
63 GGTCGATTAACATTTCCAA
764257 CAGGGTTCAA
Statistics
Matches: 157, Mismatches: 34, Indels: 18
0.75 0.16 0.09
Matches are distributed among these distances:
116 26 0.17
117 67 0.43
118 60 0.38
119 4 0.03
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (116 bp):
AGGGAGAAAAGTTTAAAATGAGAAAACTTGTTCAACCTTTGCTCAAATCCATCATATAATGAGGT
CGATTAACATTTCCAATAAAAGGGTTCATAACAAGAAAAACTAATAAGATG
Found at i:764845 original size:19 final size:20
Alignment explanation
Indices: 764809--764846 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
764799 AAAAAATGAG
*
764809 TTGTAAATAAACCAAAAAAA
1 TTGTAAATAAAACAAAAAAA
764829 TTGTAAA-AAAACAAAAAA
1 TTGTAAATAAAACAAAAAA
764847 TATTCTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.68, C:0.08, G:0.05, T:0.18
Consensus pattern (20 bp):
TTGTAAATAAAACAAAAAAA
Found at i:765687 original size:66 final size:66
Alignment explanation
Indices: 765581--765742 Score: 270
Period size: 66 Copynumber: 2.5 Consensus size: 66
765571 GTTCACGTGG
* *
765581 TTCTTGGTTTTTGTCCTCAGCAGGTGTGGAGCAGGATTGGAATGGGCACAAAGAATTCTATTTTA
1 TTCTTGGTTTTTGTCCTCAACAGGCGTGGAGCAGGATTGGAATGGGCACAAAGAATTCTATTTTA
765646 T
66 T
* *
765647 TTCTTGGTTTTTGTCCTCAACATGCGTGGAGCAGGCTTGGAATGGGCACAAAGAATTCTATTTTA
1 TTCTTGGTTTTTGTCCTCAACAGGCGTGGAGCAGGATTGGAATGGGCACAAAGAATTCTATTTTA
765712 T
66 T
* *
765713 TTCTTGGTTTTTGTCCTCAGCAGGCTTGGA
1 TTCTTGGTTTTTGTCCTCAACAGGCGTGGA
765743 ATGGGCACAT
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 89 1.00
ACGTcount: A:0.20, C:0.16, G:0.26, T:0.38
Consensus pattern (66 bp):
TTCTTGGTTTTTGTCCTCAACAGGCGTGGAGCAGGATTGGAATGGGCACAAAGAATTCTATTTTA
T
Found at i:767143 original size:28 final size:31
Alignment explanation
Indices: 767084--767143 Score: 72
Period size: 29 Copynumber: 2.0 Consensus size: 31
767074 ATTACAGTAT
* *
767084 TTATTTTCATGCATTTTTTTTAATTTATGTC
1 TTATTTTCATGCATTTCTTTCAATTTATGTC
*
767115 TTATTTTC-TGC-TTTCTTTCATTTTA-GTC
1 TTATTTTCATGCATTTCTTTCAATTTATGTC
767143 T
1 T
767144 CATGAAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 4 0.15
29 11 0.42
30 3 0.12
31 8 0.31
ACGTcount: A:0.15, C:0.13, G:0.07, T:0.65
Consensus pattern (31 bp):
TTATTTTCATGCATTTCTTTCAATTTATGTC
Found at i:767669 original size:136 final size:136
Alignment explanation
Indices: 767326--767672 Score: 401
Period size: 137 Copynumber: 2.5 Consensus size: 136
767316 TCGGTCTCGC
* *
767326 TTTTGTCCGAGGTTCCATTTTTGGTTATTTGATTCAATAATTTGCTAAAATTGATTAGGTTTTAA
1 TTTTG-CCGAGGTTCCA-TTTTGGTTATTTGATTCAATAATTGGCTAAAATTAATTAGGTTTTAA
* * * * * *
767391 TACTAGAGCCTTCATTCTAGATTAATTTTACTTTCGACCTTTAATTTAGAACAATTTCTAATTTG
64 TATTAGAGCCTTCATTCTAGATAAATTTCACATTAGACCTTAAATTTAGAACAATTTCTAATTTG
*
767456 GTCCTCAC
129 GTCCTCAA
* ** *
767464 TTTTGCCCGAGGTTCCATTTTGGTTATTCGATTCAATAATTGGCTAAAATTAATTATTTTTTAAA
1 TTTTG-CCGAGGTTCCATTTTGGTTATTTGATTCAATAATTGGCTAAAATTAATTAGGTTTTAAT
* * * * * * *
767529 ATTAGAGCC-TCTATTTTATATAAATTTCACATTAGTCCTTAAATTTAGGAC-ATTTGTGATTTT
65 ATTAGAGCCTTC-ATTCTAGATAAATTTCACATTAGACCTTAAATTTAGAACAATTTCTAATTTG
*
767592 GTCCTTAA
129 GTCCTCAA
* * ** *
767600 TTTTGCCTGAGGTTCCATTTTGGTTGTTTGATTTAATAATTGGCTAAAATTTCTTAGGTGTTAAT
1 TTTTGCC-GAGGTTCCATTTTGGTTATTTGATTCAATAATTGGCTAAAATTAATTAGGTTTTAAT
767665 ATTAGAGC
65 ATTAGAGC
767673 TTCCATTTAG
Statistics
Matches: 176, Mismatches: 31, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
135 2 0.01
136 78 0.44
137 80 0.45
138 16 0.09
ACGTcount: A:0.27, C:0.13, G:0.14, T:0.46
Consensus pattern (136 bp):
TTTTGCCGAGGTTCCATTTTGGTTATTTGATTCAATAATTGGCTAAAATTAATTAGGTTTTAATA
TTAGAGCCTTCATTCTAGATAAATTTCACATTAGACCTTAAATTTAGAACAATTTCTAATTTGGT
CCTCAA
Found at i:781494 original size:26 final size:26
Alignment explanation
Indices: 781465--781515 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
781455 AAATTGCCCT
**
781465 TGAACCCAAAAATGGTCAGAATAACA
1 TGAACCCAAAAATGACCAGAATAACA
*
781491 TGAACTCAAAAATGACCAGAATAAC
1 TGAACCCAAAAATGACCAGAATAAC
781516 CCTTAGTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.51, C:0.20, G:0.14, T:0.16
Consensus pattern (26 bp):
TGAACCCAAAAATGACCAGAATAACA
Found at i:782867 original size:18 final size:18
Alignment explanation
Indices: 782823--782867 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
782813 GAATATTTTT
782823 TTTGAAATTGTGTTTATA
1 TTTGAAATTGTGTTTATA
*
782841 TTTATAAATTGT-TTTATA
1 TTT-GAAATTGTGTTTATA
782859 GTTTGAAAT
1 -TTTGAAAT
782868 AATTCAACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 13 0.57
19 10 0.43
ACGTcount: A:0.31, C:0.00, G:0.13, T:0.56
Consensus pattern (18 bp):
TTTGAAATTGTGTTTATA
Found at i:785940 original size:14 final size:15
Alignment explanation
Indices: 785904--785944 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
785894 AAAATACATC
* *
785904 AAATCATAT-TTTTT
1 AAATCATATATATCT
785918 AAATCATATATATCT
1 AAATCATATATATCT
785933 AAAT-ATATATAT
1 AAATCATATATAT
785945 ATTCATGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 17 0.71
15 7 0.29
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.46
Consensus pattern (15 bp):
AAATCATATATATCT
Found at i:790055 original size:143 final size:138
Alignment explanation
Indices: 789785--790072 Score: 522
Period size: 143 Copynumber: 2.0 Consensus size: 138
789775 GTGTGGGAGT
789785 GTTGTTCCTCCAGTTGAACAAATTGTAAACATTTTTAGGGGTCTTCCTCGTGAATATCATTCATG
1 GTTGTTCCTCCAGTTGAACAAATTGTAAACATTTTTAGGGGTCTTCCTCGTGAATATCATTCATG
789850 GTTGTGTCTCAACAATGAAAGAAGCTCTCTCCATAGACAACTTACATACAATGTTGATGGATGTA
66 GTTGTGTCTCAACAATGAAAGAAGCTCTCTCCATAGACAACTTACATACAATGTTGATGGATGTA
789915 GAGGTACA
131 GAGGTACA
789923 GTTGTTCCTCCAGTTGAACAAATTGTAAACATTTTTAGGGGTCTTCCTCGTGAATATCAGTCATT
1 GTTGTTCCTCCAGTTGAACAAATTGTAAACATTTTTAGGGGTCTTCCTCGTG-A-AT-A-TCATT
789988 CATGGTTGTTGTCTCAACAATGAAAGAAGCTCTCTCCATAGACAACTTACATACAATGTTGATGG
62 CATGGTTG-TGTCTCAACAATGAAAGAAGCTCTCTCCATAGACAACTTACATACAATGTTGATGG
790053 ATGTAGAGGTACA
126 ATGTAGAGGTACA
790066 GCTTGTT
1 G-TTGTT
790073 GGATTTGATG
Statistics
Matches: 144, Mismatches: 0, Indels: 6
0.96 0.00 0.04
Matches are distributed among these distances:
138 52 0.36
139 1 0.01
140 2 0.01
141 1 0.01
142 13 0.09
143 70 0.49
144 5 0.03
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (138 bp):
GTTGTTCCTCCAGTTGAACAAATTGTAAACATTTTTAGGGGTCTTCCTCGTGAATATCATTCATG
GTTGTGTCTCAACAATGAAAGAAGCTCTCTCCATAGACAACTTACATACAATGTTGATGGATGTA
GAGGTACA
Found at i:796053 original size:21 final size:21
Alignment explanation
Indices: 796009--796054 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
795999 GTTTACGGTG
* * * *
796009 ATTGTGGCCGTCTCGTGCGTT
1 ATTGCGGCCGTCGCGGGCGCT
796030 ATTGCGGCCGTCGCGGGCGCT
1 ATTGCGGCCGTCGCGGGCGCT
796051 ATTG
1 ATTG
796055 GGTGCTATTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.07, C:0.26, G:0.37, T:0.30
Consensus pattern (21 bp):
ATTGCGGCCGTCGCGGGCGCT
Found at i:801910 original size:46 final size:46
Alignment explanation
Indices: 801832--802080 Score: 345
Period size: 46 Copynumber: 5.4 Consensus size: 46
801822 ATTATACCGT
* * **
801832 TAATACACCGTTATGTATTTTCATTTGGGGCATCCTTTCATGCCGA
1 TAATGCACCGTTATGCATTTTCATTTATGGCATCCTTTCATGCCGA
* * *
801878 TTATGCACCGTTATGCATTTTCATTTATGGCATCATTTCATGTCGA
1 TAATGCACCGTTATGCATTTTCATTTATGGCATCCTTTCATGCCGA
*
801924 TAATGCACCGTTATGAATTTTCATTTATGGCATCCTTTCATGCCGA
1 TAATGCACCGTTATGCATTTTCATTTATGGCATCCTTTCATGCCGA
* ** *
801970 TAATGCACCGTTATGCATTTTCATTTCTGATATTCTTTCATGCCGA
1 TAATGCACCGTTATGCATTTTCATTTATGGCATCCTTTCATGCCGA
* * **
802016 TAATGCACTGTTATGCATTTTCATTTATGACATAATTTCATGCCGA
1 TAATGCACCGTTATGCATTTTCATTTATGGCATCCTTTCATGCCGA
*
802062 TAATGTACCGTTATGCATT
1 TAATGCACCGTTATGCATT
802081 AGTGGCACAT
Statistics
Matches: 180, Mismatches: 23, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 180 1.00
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.41
Consensus pattern (46 bp):
TAATGCACCGTTATGCATTTTCATTTATGGCATCCTTTCATGCCGA
Found at i:802135 original size:49 final size:49
Alignment explanation
Indices: 802075--802297 Score: 232
Period size: 49 Copynumber: 4.6 Consensus size: 49
802065 TGTACCGTTA
* * * *
802075 TGCATTAGTGGCACATTTCTGCCAAAAATGCACCATTTGTCATCTAACT
1 TGCATTAGTGGCACCTTTCTACCAAAAATGCACCATTAGGCATCTAACT
* * ** *
802124 TGTATTAGTGGCACCTTTCTACCAAAATTGCACCGCTAGGCATTTAACT
1 TGCATTAGTGGCACCTTTCTACCAAAAATGCACCATTAGGCATCTAACT
* ** * *
802173 TGCATTAATAACACCTTTCTACCAAAAATGCACCGTTAGGCATTTAACT
1 TGCATTAGTGGCACCTTTCTACCAAAAATGCACCATTAGGCATCTAACT
** * * *
802222 TGCATTAGTGTG-ACCTTTCTATAAAAAATGTACCATTTGTCATCTAACT
1 TGCATTAGTG-GCACCTTTCTACCAAAAATGCACCATTAGGCATCTAACT
* * *
802271 TGTATTAGTGGCACCTTTATGCCAAAA
1 TGCATTAGTGGCACCTTTCTACCAAAA
802298 TACACCTTTA
Statistics
Matches: 142, Mismatches: 30, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
48 1 0.01
49 141 0.99
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (49 bp):
TGCATTAGTGGCACCTTTCTACCAAAAATGCACCATTAGGCATCTAACT
Found at i:802322 original size:19 final size:18
Alignment explanation
Indices: 802281--802322 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
802271 TGTATTAGTG
*
802281 GCACCTTTATGCCAAAAT
1 GCACCTTTATGCAAAAAT
*
802299 ACACCTTTATGCTAAAAAT
1 GCACCTTTATGC-AAAAAT
802318 GCACC
1 GCACC
802323 GTTAGGCATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.36, C:0.29, G:0.10, T:0.26
Consensus pattern (18 bp):
GCACCTTTATGCAAAAAT
Found at i:808988 original size:21 final size:21
Alignment explanation
Indices: 808962--809029 Score: 75
Period size: 22 Copynumber: 3.2 Consensus size: 21
808952 AGGGAATTGA
808962 TCCCCCCATGAGGGAACCGAT
1 TCCCCCCATGAGGGAACCGAT
**
808983 TCCCCCTTTGAGGGGAACCGAT
1 TCCCCCCATGA-GGGAACCGAT
* *
809005 TCCCCCCA-CAGGGAATCGAT
1 TCCCCCCATGAGGGAACCGAT
*
809025 ACCCC
1 TCCCC
809030 TTGGGGTTCT
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
20 13 0.33
21 10 0.26
22 16 0.41
ACGTcount: A:0.22, C:0.40, G:0.22, T:0.16
Consensus pattern (21 bp):
TCCCCCCATGAGGGAACCGAT
Found at i:813561 original size:27 final size:28
Alignment explanation
Indices: 813516--813573 Score: 109
Period size: 27 Copynumber: 2.1 Consensus size: 28
813506 TGGTTAGATT
813516 AACCTTAAAAAGATGATTCATTTATAGA
1 AACCTTAAAAAGATGATTCATTTATAGA
813544 AACCTTAAAAA-ATGATTCATTTATAGA
1 AACCTTAAAAAGATGATTCATTTATAGA
813571 AAC
1 AAC
813574 AAAATCCACG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 19 0.63
28 11 0.37
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.31
Consensus pattern (28 bp):
AACCTTAAAAAGATGATTCATTTATAGA
Found at i:822382 original size:12 final size:12
Alignment explanation
Indices: 822365--822389 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
822355 GTTACAGTCG
822365 GAGGAGATGAGC
1 GAGGAGATGAGC
822377 GAGGAGATGAGC
1 GAGGAGATGAGC
822389 G
1 G
822390 GAAGAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.52, T:0.08
Consensus pattern (12 bp):
GAGGAGATGAGC
Found at i:824824 original size:172 final size:172
Alignment explanation
Indices: 824241--825425 Score: 1009
Period size: 172 Copynumber: 6.9 Consensus size: 172
824231 AAATGCCAAC
* * * * * *
824241 TACGATTGTCAAAAATTGAGGGGAA-ATTTTAAAAAGAAAAACGAATAGTGTATACATGTTGTTC
1 TACGATTGTAAAAAATTAAGGGAAATATTTTGAAAAGTAAAACGAATAGTGTATACGTGTTGTTC
* * * * * * *
824305 TTGATTATGTGAAATGAATAGTGTAAAAAAGAAGCGTTTGTAGTCCAACAATTATGTTAATTTCC
66 TTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCC
* * * * *
824370 TTCTAAGCAATAGATCTGGGTTCGACTCCCAGCAAACACAAT
131 TTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAATACAAT
** * ** * * *
824412 TACGACAGTAAAAAATTAAGGGGAAAT-TTTT-TAAAGTAAAACGCTTGGTCTATACGTGTTTTT
1 TACGATTGTAAAAAATTAA-GGGAAATATTTTGAAAAGTAAAACGAATAGTGTATACGTGTTGTT
* * * * * * * * * *
824475 ATTGGTTATGTGGAACAAATAGTTTAAAGAATAGGCTTTTGTAGTCCAATGGTTTGGATAATTGC
65 CTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTGC
* * * * * * **
824540 CTTCCATGCAATGGACTCGAGTTCGACTCTCGGTAAATGTAAT
130 CTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAATACAAT
* * * * * * *
824583 TATGATAT-T-AAAATTTAAGGGGAA-ATTTTGAAAAGTAAAAAGAATAGTGTATACCTTTTATT
1 TACGAT-TGTAAAAAATTAAGGGAAATATTTTGAAAAGTAAAACGAATAGTGTATACGTGTTGTT
* * * * * *
824645 TTTGATTATGTAAAACGAATAGTGTAAATAAGTGGCGTTTGTACTCCAACGATTAGGATAATTAC
65 CTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTGC
*
824710 CTTACAAGCAATAGACCCGGGTTCGACTCCCGGCAAATACAAT
130 CTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAATACAAT
* * *
824753 TAAGATTGTAAAAAATTAAGGGAAATATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTC
1 TACGATTGTAAAAAATTAAGGGAAATATTTTGAAAAGTAAAACGAATAGTGTATACGTGTTGTTC
* * * * *
824818 TTGATTATGTGAAAGGAATAGTGTAAAAAATAGGCGTTTGTAGTCCAACGATTATGATAATTTCC
66 TTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCC
* * * * * * *
824883 TTCCAAGCAATACACCCAGGTTCTAATCCC-GAAAAAAAAAT
131 TTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAATACAAT
* * * * * * * * * *
824924 TAGGATAGT-AAAACTTAATGGAAAAAATTTGAAAATTGAAACGAGTAGTGTATACATGTTGTTC
1 TACGATTGTAAAAAATTAAGGGAAATATTTTGAAAAGTAAAACGAATAGTGTATACGTGTTGTTC
* * * * * * * *
824988 TTGATTATTTGAAACAAATAGT-T-TA-AAGAGGCCTTTGTATTGCAACGGTTTGGATAATTGCC
66 TTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCC
* * * ** * * * *
825050 TTCCATGTAATGGACTGGGGTTTGACTCTCGGTAAATATAAT
131 TTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAATACAAT
* * * * * **
825092 TACGATAT-TAAAAAATTAA-GGAAATGTTTTTGAAAAGTAAAACAAATAGTATATACTTTTTAC
1 TACGAT-TGTAAAAAATTAAGGGAAAT-ATTTTGAAAAGTAAAACGAATAGTGTATACGTGTTGT
* * * * * * *
825155 GCTTGATTATGTGAAACGAATTGTTTAAAGAAGAGACGTTAGTAGTCTAATTG-TTAGGATAATT
64 TCTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAA-CGATTAGGATAATT
* * * *
825219 GCCTTCCAGGCAATAGACTCGGGTTTGACTACCGG-AAA-ACGTAAT
128 GCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAATAC--AAT
* * *
825264 TACGA-TGTTAAAAAATTAAGGGAAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTT
1 TACGATTG-TAAAAAATTAAGGGAAATATTTTGAAAAGTAAAACGAATAGTGTATACGTGTTGTT
* * *
825328 CTTGATTATGTGAAACAAATAGTGTAAAGATGAGGCATTTGTAGTCCAACGATTAGGATAATAAT
65 CTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGG---ATAAT
* * *
825393 TGCCTTCCAATCAAAAGACCCGGGTTTGACTCC
127 TGCCTTCCAAGCAATAGACCCGGGTTCGACTCC
825426 ATACAAATGC
Statistics
Matches: 786, Mismatches: 203, Indels: 46
0.76 0.20 0.04
Matches are distributed among these distances:
167 48 0.06
168 20 0.03
169 65 0.08
170 190 0.24
171 155 0.20
172 269 0.34
173 6 0.01
175 33 0.04
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.32
Consensus pattern (172 bp):
TACGATTGTAAAAAATTAAGGGAAATATTTTGAAAAGTAAAACGAATAGTGTATACGTGTTGTTC
TTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCC
TTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAATACAAT
Found at i:825307 original size:511 final size:510
Alignment explanation
Indices: 824244--827877 Score: 1830
Period size: 516 Copynumber: 7.1 Consensus size: 510
824234 TGCCAACTAC
* * * * * * **
824244 GATTGTCAAAAATTGAGGG-GAAATTTTAAAAAGAAAAACGAATAGTGTATACATGTTGTTCTTG
1 GATTGTAAAAAATTAAGGGAAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCTTG
* * * * *
824308 ATTATGTGAAATGAATAGTGTAAAAAAGAAGCGTTTGTAGTCCAACAATTATGTTAATTTCCTTC
66 ATTATGTGAAACGAATAGTGTAAAAAATAGGCGTTTGTAGTCCAACGATTATGATAATTTCCTTC
* * * ** * * * * **
824373 TAAGCAATAGATCTGGGTTCGACTCCCAGCAAACACAATTACGACAGTAAAAAATTAAGGGGAAA
131 CAAGCAATACACCCAGGTTCGAATCCCAGAAAAAAAAATTACGACAGTAAAAAATTAAGGAAAAA
* ** ** * * * * *
824438 TTTTTTAAAGTAAAACGCTTGGTCTATACGTGTTTTTATTGGTTATGTGGAACAAATAGTTTAAA
196 ATTTGAAAAGTAAAACGAGTAGTCTATACATGTTGTTATTGATTATGTGAAACAAATAGTTTAAA
* *
824503 GAATAGGCTTTTGTAGTCCAATGGTTTGGATAATTGCCTTCCATGCAATGGACTCGAGTTCGACT
261 G-A-AGGCCTTTGTAGTCCAACGGTTTGGATAATTGCCTTCCATGCAATGGACTCGAGTTCGACT
* * * *
824568 CTCGGTAAATGTAATTATGATATTAAAATTTAAGGGGAAATTTTGAAAAGTAAAAAGAATAGTGT
324 CTCGGTAAATATAATTACGATATTAAAAATTAA-GGGAAATTTTGAAAAGTAAAAAGAATAGTAT
*** * * * *
824633 ATACCTTTTATTTTTGATTATGTAAAACGAATAGTGTAAATAAGTGGCGTTTGTACTCCAACGAT
388 ATACCTTTTACGCTTGATTATGTAAAACGAATAGTGTAAAGAAGAGACGTTAGTACTCCAACGAT
*
824698 TAGGATAATTACCTTACAAGCAATAGACCCGGGTTCGACTCCCGGCAAATACAATTAA
453 TAGGATAATTACCTTACAAGCAATAGACCCGGGTTCGACTACCGGCAAATACAATTAA
*
824756 GATTGTAAAAAATTAAGGGAAATATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCTTG
1 GATTGTAAAAAATTAAGGGAAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCTTG
*
824821 ATTATGTGAAAGGAATAGTGTAAAAAATAGGCGTTTGTAGTCCAACGATTATGATAATTTCCTTC
66 ATTATGTGAAACGAATAGTGTAAAAAATAGGCGTTTGTAGTCCAACGATTATGATAATTTCCTTC
* * * *
824886 CAAGCAATACACCCAGGTTCTAATCCC-GAAAAAAAAATTAGGATAGT-AAAACTTAATGGAAAA
131 CAAGCAATACACCCAGGTTCGAATCCCAGAAAAAAAAATTACGACAGTAAAAAATTAA-GGAAAA
* * * * *
824949 AATTTGAAAATTGAAACGAGTAGTGTATACATGTTGTTCTTGATTATTTGAAACAAATAGTTTAA
195 AATTTGAAAAGTAAAACGAGTAGTCTATACATGTTGTTATTGATTATGTGAAACAAATAGTTTAA
* * * * * *
825014 AG-AGGCCTTTGTATTGCAACGGTTTGGATAATTGCCTTCCATGTAATGGACTGGGGTTTGACTC
260 AGAAGGCCTTTGTAGTCCAACGGTTTGGATAATTGCCTTCCATGCAATGGACTCGAGTTCGACTC
825078 TCGGTAAATATAATTACGATATTAAAAAATTAA-GGAAATGTTTTTGAAAAGTAAAACA-AATAG
325 TCGGTAAATATAATTACGATATT-AAAAATTAAGGGAAA---TTTTGAAAAGTAAAA-AGAATAG
* * * * * *
825141 TATATACTTTTTACGCTTGATTATGTGAAACGAATTGTTTAAAGAAGAGACGTTAGTAGTCTAAT
385 TATATACCTTTTACGCTTGATTATGTAAAACGAATAGTGTAAAGAAGAGACGTTAGTACTCCAA-
* * * * * * *
825206 TG-TTAGGATAATTGCCTTCCAGGCAATAGACTCGGGTTTGACTACCGG-AAA-ACGTAATTAC
449 CGATTAGGATAATTACCTTACAAGCAATAGACCCGGGTTCGACTACCGGCAAATAC--AATTAA
825267 GA-TGTTAAAAAATTAAGGGAAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCTT
1 GATTG-TAAAAAATTAAGGGAAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCTT
* * * *
825331 GATTATGTGAAACAAATAGTGT-AAAGATGAGGCATTTGTAGTCCAACGATTAGGATAATAATTG
65 GATTATGTGAAACGAATAGTGTAAAAAAT-AGGCGTTTGTAGTCCAACGATTATGATAAT--TT-
* * * * * * * *
825395 CCTTCCAATCAAAAGACCCGGGTTTGACT-CC----ATACAAA-T--G-C-------AA-T---G
126 CCTTCCAAGCAATACACCCAGGTTCGAATCCCAGAAAAAAAAATTACGACAGTAAAAAATTAAGG
* * * * * * *
825440 -------TTGAATAGTAAAACGAGTGGTGTATACGTGTTGGTCTTGATTATGAGAAACAAATAGT
191 AAAAAATTTGAAAAGTAAAACGAGTAGTCTATACATGTTGTTATTGATTATGTGAAACAAATAGT
* * ** * * * **
825498 TTAAATAAGAGGCGTTTGTAGTCCAACAATTAGGATAATTTCCTTCCAAGCAATAAACTCGAGTT
256 TTAAA-GA-AGGCCTTTGTAGTCCAACGGTTTGGATAATTGCCTTCCATGCAATGGACTCGAGTT
* * * * * * * *
825563 CGACTCCCGGTAAACACAATTACTATAGTAAAAAAATTAAGGGGAGTTATTGAAAAGTAAAATGA
319 CGACTCTCGGTAAATATAATTACGATA-T-TAAAAATTAAGGGAAATT-TTGAAAAGTAAAAAGA
* * ** * *** * * * * * ** * *
825628 GTAGTGTATATGTGTTATTATCGATTATGTGAAACAAATAGTTTAAGGAAGAGGTGTTTGTAGTC
381 ATAGTATATACCTTTTACGCTTGATTATGTAAAACGAATAGTGTAAAGAAGAGACGTTAGTACTC
* * *
825693 CAAC-AGTTAGGATAATTACCTTCCAAGCAATATG-CCCGGGTTCAACT-CCTGCAAATACAATT
446 CAACGA-TTAGGATAATTACCTTACAAGCAATA-GACCCGGGTTCGACTACCGGCAAATACAATT
*
825755 AC
509 AA
** * * * *
825757 GATAATAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGCATAGGTGTTGTTCTTG
1 GATTGTAAAAAATTAAGGGAAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCTTG
* * * * * * *
825822 ATTATGTGAAACAAATAGTGT-AAAGATGAGGCATTTGTAGTCCAACCATTAGGATAATTGCCAC
66 ATTATGTGAAACGAATAGTGTAAAAAAT-AGGCGTTTGTAGTCCAACGATTATGATAATTTCC-T
* ** ** * * * * ** * * *
825886 TCCAAACTGTAGTCTCGGGTTCGACTCTC-GAAAAATTTAATTTCGATAGT-AAAAA--AAGTGG
129 TCCAAGCAATACACCCAGGTTCGAATCCCAGAAAAA-AAAATTACGACAGTAAAAAATTAAG-GA
* * * * * * * ** *
825947 TAAATTTTGAATAGTAAAACGAATAGT-TTTACCTTTTGTGCTTGATTATGTGAAACTAATACTG
192 AAAAATTTGAAAAGTAAAACGAGTAGTCTATACATGTTGTTATTGATTATGTGAAACAAATA--G
** * * * * ** * * * * * *
826011 TAAAAAGGAGGCATTTGTAATCCTATTGTTAGGATAATTACCTTGCAAGCAATAGAC-CCAGGTT
255 TTTAAAGAAGGCCTTTGTAGTCCAACGGTTTGGATAATTGCCTTCCATGCAATGGACTCGA-GTT
* * * * * *
826075 TGAGTCCCGGCAAACGA-AATTACGAT-TGTAAAAAATTAAGGGGAAACTTTTGAAAAATAAAAC
319 CGACTCTCGGTAAA-TATAATTACGATAT-T-AAAAATTAA-GGGAAA-TTTTGAAAAGTAAAA-
** * * * *
826138 A-AATAGTATATATATACCTTTTGTGCTTGATAATATGAAACAAATAGTGTAAAG-AG-GA-GTT
378 AGAATAG----TATATACCTTTTACGCTTGATTATGTAAAACGAATAGTGTAAAGAAGAGACGTT
** * * * * * * * * * *
826199 TTTAGTCCAACTG-TTAGGTTGATTGCCTTCCAAGAAATAGACTCTGGTTCGACTTA-CAGTAAA
439 AGTACTCCAAC-GATTAGGATAATTACCTTACAAGCAATAGACCCGGGTTCGAC-TACCGGCAAA
*
826262 TGCAATTACA
502 TACAATTA-A
* * * * * *** *
826272 -ATAGTACAAAATTAAGGG-GAAATTTTGGAAAAGTAAAACGATTAGCGTATGCCTTTTGTTCTT
1 GATTGTAAAAAATTAAGGGAAAAATTTT-GAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCTT
* * * * * * * *
826335 GATTATGTGAAATGAATACTATAAAGAAGAGGCATTTGTAGTCCAAC-AGTTAGGATAATTGCCT
65 GATTATGTGAAACGAATAGTGTAAAAAATAGGCGTTTGTAGTCCAACGA-TTATGATAATTTCCT
**** * * * ** * * * * *
826399 TCCAAGCAATAGGGTC-GGATTTGACTTCTGGCAAACACAATCACGATAGT-AAAAATTAAAGG-
129 TCCAAGCAATACACCCAGG-TTCGAATCCCAGAAAAAAAAATTACGACAGTAAAAAATT-AAGGA
* * * ** ** * **
826461 -AAAA-TTGAAAAGTAAAA--AAT-GTGTATACCT-TTCGTGCTCAATTATGTTAAAGGAATAGT
192 AAAAATTTGAAAAGTAAAACGAGTAGTCTATACATGTT-GTTATTGATTATGTGAAACAAATAGT
* ** * * * * * * * * ** * *
826520 GTAAAGAAGAGGTGTTTATGGTCCAACAGTTAGGATAATTACATTTCAGGCAATAAACCCGGGTT
256 TTAAAG-A-AGGCCTTTGTAGTCCAACGGTTTGGATAATTGCCTTCCATGCAATGGACTCGAGTT
* *** * * * * *
826585 CGACTCCCAACAAATGTAACTACGATAGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAAGGA
319 CGACTCTCGGTAAATATAATTACGATA-TTAAAAATTAA-GGG-AAATTTTGAAAAGTAAAAAGA
* * * * *** * * * * * *
826650 GTAG-AGTAAACATATTGTTCTTGATTATCTAAAATGAATAGTGTAAGGAAGAGGCGTTTGTAGT
381 ATAGTA-TATACCTTTTACGCTTGATTATGTAAAACGAATAGTGTAAAGAAGAGACGTTAGTACT
* ** * * *
826714 CCAACGATTATGATAATTTTCTTCCAAGCAATAGATCCGGGTTCGACT-CCAGGAAAACT-CAAT
445 CCAACGATTAGGATAATTACCTTACAAGCAATAGACCCGGGTTCGACTACC-GGCAAA-TACAAT
*
826777 TAC
508 TAA
* * * *
826780 GATAGTTAAAAATTAAGGGAAAAATTTTGAAAAGTAAAATGAATAGTGTATATGTGTTGTTCTTG
1 GATTGTAAAAAATTAAGGGAAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCTTG
* * * * * * * *
826845 ATTATGTGAAACAAATAGTTTAAAGAAGAGTCGTTTGTAGTCCAACTATTAGGATAATTACCTTC
66 ATTATGTGAAACGAATAGTGTAAAAAATAGGCGTTTGTAGTCCAACGATTATGATAATTTCCTTC
* ** *** * * * *** * * * * *
826910 CAAACAATAGTCTTGGGTTCGACTCCCGGCAAACGCAATCACAATAATAAAATAATTAAGGGGAA
131 CAAGCAATACACCCAGGTTCGAATCCCAGAAAAAAAAATTACGACAGTAAAA-AATTAA-GGAAA
** * * * * ** ** * *
826975 ACTTTTAAAAAGTAAAACGAATAG-CGTAAACATTTTGTGCTTGATTATGTGAAATTAATAATGT
194 AAATTTGAAAAGTAAAACGAGTAGTC-TATACATGTTGTTATTGATTATGTGAAACAAATAGTTT
* * * * * * * *
827039 AAAGAAGATG-GTTTGTAGTCCAATGGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGATT-
258 AAAGAAG--GCCTTTGTAGTCCAACGGTTTGGATAATTGCCTTCCATGCAATGGACTCGAG-TTC
* * * * * *
827102 GACCCT-GG-ATAATGTAATTACGATAGTAAAAACTTAAGGGGAATTTTTTGTAAAGTAAAACGA
320 GACTCTCGGTA-AATATAATTACGATATTAAAAA-TTAA-GGGAA-ATTTTGAAAAGTAAAAAGA
* * * * *** * * * * * * *
827165 GTAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAAAATAGGCGTTTGTAGTC
381 ATAGTATATACCTTTTACGCTTGATTATGTAAAACGAATAGTGTAAAGAAGAGACGTTAGTACTC
* * * * * * * * * *
827230 TAACGATTAGAATAATCT-CTTTCCAAGTAATAGGCCCGGGTTCTACTCCCGAACAAAAACAATT
446 CAACGATTAGGATAAT-TACCTTACAAGCAATAGACCCGGGTTCGACTACCG-GCAAATACAATT
*
827294 AG
509 AA
** * * *
827296 GATAATAAAGAAA-TAAGGGAAAAATTTTGAAATGTAAAACGAGTAGTGTGTACGTGTTGTTCTT
1 GATTGTAAA-AAATTAAGGGAAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCTT
* * * * * * * *
827360 GATTATTTGAAACAAATAGTGTAAAGAAGAGGCCTTTGTAGTCCAATGGTT-TGGATAATTGCCT
65 GATTATGTGAAACGAATAGTGTAAAAAATAGGCGTTTGTAGTCCAACGATTAT-GATAATTTCCT
* ** *** * * * *** * *
827424 TCCATGCAATGGACTGGGGTTCGACTCTC-GTAAATGTAATTACGATATTAAAAAA-TAAGGAGA
129 TCCAAGCAATACACCCAGGTTCGAATCCCAGAAAAAAAAATTACGACAGTAAAAAATTAAGGA-A
** * * * ** * *
827487 AATTTTTGAAAAGTAAAATGAGTAGTATATTCGGGTTGTTCTTGATTATGTGAAATAAATAGTGT
193 AAAATTTGAAAAGTAAAACGAGTAGTCTATACATGTTGTTATTGATTATGTGAAACAAATAGT-T
* * * * * * * * * *
827552 GAGTAAG-AGGCGC-TTGTAGTTCAATGGTTAGGATAATTGCCTTCTAAGCAATAGTCCCGGGTT
257 TA--AAGAAGGC-CTTTGTAGTCCAACGGTTTGGATAATTGCCTTCCATGCAATGGACTCGAGTT
* * * *** * * * * *
827615 TGACTCCCGGCAAACGCAATCACAATAATAAAATAATTAAGGGGAAAATTTTAAAAAGTAAAACG
319 CGACTCTCGGTAAATATAATTACGAT-ATTAAA-AATTAA-GGG-AAATTTTGAAAAGTAAAAAG
* * ** ** * * * * *
827680 AATAGTGTAAATGTTTTGTGCTTGATTATGTTAAATGAATAATGTAAAGAAGATG-CGTTTGTAG
380 AATAGTATATACCTTTTACGCTTGATTATGTAAAACGAATAGTGTAAAGAAGA-GACGTTAGTAC
* * * * *
827744 TCCAATGGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGACT-CCTGGCTAATGA-AA
444 TCCAACGATTAGGATAATTACCTTACAAGCAATAGACCCGGGTTCGACTACC-GGCAAAT-ACAA
*
827807 TTAC
507 TTAA
* *
827811 GATAGTAAAAAATTAAGGG-GAAATTTTGAAAAGTAAAACGAGTAGTG--TATGTGTTGTTCTTG
1 GATTGTAAAAAATTAAGGGAAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCTTG
827873 ATTAT
66 ATTAT
827878 TTTAAATAAA
Statistics
Matches: 2483, Mismatches: 493, Indels: 292
0.76 0.15 0.09
Matches are distributed among these distances:
487 2 0.00
488 75 0.03
489 1 0.00
490 126 0.05
491 168 0.07
492 15 0.01
493 5 0.00
494 1 0.00
495 1 0.00
496 1 0.00
499 1 0.00
500 1 0.00
503 2 0.00
505 1 0.00
506 33 0.01
507 3 0.00
508 15 0.01
509 273 0.11
510 156 0.06
511 252 0.10
512 236 0.10
513 289 0.12
514 240 0.10
515 193 0.08
516 348 0.14
517 43 0.02
518 2 0.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (510 bp):
GATTGTAAAAAATTAAGGGAAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCTTG
ATTATGTGAAACGAATAGTGTAAAAAATAGGCGTTTGTAGTCCAACGATTATGATAATTTCCTTC
CAAGCAATACACCCAGGTTCGAATCCCAGAAAAAAAAATTACGACAGTAAAAAATTAAGGAAAAA
ATTTGAAAAGTAAAACGAGTAGTCTATACATGTTGTTATTGATTATGTGAAACAAATAGTTTAAA
GAAGGCCTTTGTAGTCCAACGGTTTGGATAATTGCCTTCCATGCAATGGACTCGAGTTCGACTCT
CGGTAAATATAATTACGATATTAAAAATTAAGGGAAATTTTGAAAAGTAAAAAGAATAGTATATA
CCTTTTACGCTTGATTATGTAAAACGAATAGTGTAAAGAAGAGACGTTAGTACTCCAACGATTAG
GATAATTACCTTACAAGCAATAGACCCGGGTTCGACTACCGGCAAATACAATTAA
Found at i:827044 original size:173 final size:172
Alignment explanation
Indices: 825440--827916 Score: 2093
Period size: 172 Copynumber: 14.5 Consensus size: 172
825430 AAATGCAATG
* * * * * * *
825440 TTGAATAGTAAAACGAGTGGTGTATACGTGTTGGTCTTGATTATGAGAAACAAATAGTTTAAATA
1 TTGAAAAGTAAAACGAATAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* * * * *
825505 AGAGGCGTTTGTAGTCCAACAATTAGGATAATTTCCTTCCAAGCAATAAACTCGAGTTCGACTCC
66 AGAGGCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTCGACTCC
* ** * *
825570 CGGTAAACACAATTACTATAGTAAAAAAATTAAGGGG--AGTT
131 CGGCAAATGCAATTACGATAGT-AAAAAATTAAGGGGAAAATT
* * * * * * * *
825611 ATTGAAAAGTAAAATGAGTAGTGTATATGTGTTATTATCGATTATGTGAAACAAATAGTTTAAGG
1 -TTGAAAAGTAAAACGAATAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* *
825676 AAGAGGTGTTTGTAGTCCAAC-AGTTAGGATAATTACCTTCCAAGCAATATG-CCCGGGTTCAAC
65 AAGAGGCGTTTGTAGTCCAACTA-TTAGGATAATTACCTTCCAAGCAATA-GACCCGGGTTCGAC
* * *
825739 T-CCTGCAAATACAATTACGATAATAAAAAATTAAGGGGAAAATT
128 TCCCGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
* *
825783 TTGAAAAGTAAAACGAATAGTGCATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
1 TTGAAAAGTAAAACGAATAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* * * * * * ** * *
825848 TGAGGCATTTGTAGTCCAACCATTAGGATAATTGCCACTCCAAACTGTAGTCTCGGGTTCGACTC
66 AGAGGCGTTTGTAGTCCAACTATTAGGATAATTACC-TTCCAAGCAATAGACCCGGGTTCGACTC
* ** ** * * *
825913 TCGAAAAATTTAATTTCGATAGT-AAAAA--AAGTGGTAAATT
130 CCGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
* * * * * * *
825953 TTGAATAGTAAAACGAATAGT-TTTACCTTTTGTGCTTGATTATGTGAAACTAATACTGTAAA-A
1 TTGAAAAGTAAAACGAATAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* * * * * * * * *
826016 AGGAGGCATTTGTAATCCTATTGTTAGGATAATTACCTTGCAAGCAATAGACCCAGGTTTGAGTC
66 A-GAGGCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTCGACTC
* * * *
826081 CCGGCAAACGAAATTACGATTGTAAAAAATTAAGGGGAAACTT
130 CCGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
* * * * * * * *
826124 TTGAAAAATAAAACAAATAGTATATATATACCTTTTGTGCTTGATAATATGAAACAAATAGTGT-
1 TTGAAAAGTAAAACGAATAG----TGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTA
* * * * * * * * *
826188 -A-AAGAGGAGTTTTTAGTCCAACTGTTAGGTTGATTGCCTTCCAAGAAATAGACTCTGGTTCGA
62 AAGAAGAGGCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTCGA
** * * * *
826251 CTTACAGTAAATGCAATTACAATAGTACAAAATTAAGGGG-AAATT
127 CTCCCGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
* * * * * ** * *
826296 TTGGAAAAGTAAAACGATTAGCGTATGCCTTTTGTTCTTGATTATGTGAAATGAATACTATAAAG
1 TT-GAAAAGTAAAACGAATAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * *** * *
826361 AAGAGGCATTTGTAGTCCAAC-AGTTAGGATAATTGCCTTCCAAGCAATAGGGTCGGATTTGACT
65 AAGAGGCGTTTGTAGTCCAACTA-TTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTCGACT
* * ** * *
826425 TCTGGCAAACACAATCACGATAGT-AAAAATTAA-AGGAAAA--
129 CCCGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
* * ** * **
826465 TTGAAAAGTAAAA--AAT-GTGTATACCT-TTCGTGCTCAATTATGTTAAAGGAATAGTGTAAAG
1 TTGAAAAGTAAAACGAATAGTGTATACGTGTT-GTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * * * * * *
826526 AAGAGGTGTTTATGGTCCAAC-AGTTAGGATAATTACATTTCAGGCAATAAACCCGGGTTCGACT
65 AAGAGGCGTTTGTAGTCCAACTA-TTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTCGACT
** * *
826590 CCCAACAAATGTAACTACGATAGTAAAAAATTAAGGGGAAAATT
129 CCCGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
* * * * * * * * * ** *
826634 TTAAAAAGTAAAAGGAGTAGAGTAAACATATTGTTCTTGATTATCTAAAATGAATAGTGTAAGGA
1 TTGAAAAGTAAAACGAATAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* * ** *
826699 AGAGGCGTTTGTAGTCCAACGATTATGATAATTTTCTTCCAAGCAATAGATCCGGGTTCGACTCC
66 AGAGGCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTCGACTCC
* * * *
826764 AGGAAAACT-CAATTACGATAGTTAAAAATTAAGGGAAAAATT
131 CGGCAAA-TGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
* * *
826806 TTGAAAAGTAAAATGAATAGTGTATATGTGTTGTTCTTGATTATGTGAAACAAATAGTTTAAAGA
1 TTGAAAAGTAAAACGAATAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* * * **
826871 AGAGTCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAACAATAGTCTTGGGTTCGACTCC
66 AGAGGCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTCGACTCC
* * * * *
826936 CGGCAAACGCAATCACAATAATAAAATAATTAAGGGGAAACTT
131 CGGCAAATGCAATTACGATAGTAAAA-AATTAAGGGGAAAATT
* * * * * * ** *
826979 TTAAAAAGTAAAACGAATAGCGTAAACATTTTGTGCTTGATTATGTGAAATTAATAATGTAAAGA
1 TTGAAAAGTAAAACGAATAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* *
827044 AGATG-GTTTGTAGTCCAA-TGGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGATT-GAC-
66 AGAGGCGTTTGTAGTCCAACT-ATTAGGATAATTACCTTCCAAGCAATAGACCCGGG-TTCGACT
* * * **
827105 CCTGG-ATAATGTAATTACGATAGTAAAAACTTAAGGGGAATTTT
129 CCCGGCA-AATGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
* * * *
827149 TTGTAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAAA
1 TTGAAAAGTAAAACGAATAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* * * * * * * *
827214 ATAGGCGTTTGTAGTCTAACGATTAGAATAATCT-CTTTCCAAGTAATAGGCCCGGGTTCTACTC
66 AGAGGCGTTTGTAGTCCAACTATTAGGATAAT-TACCTTCCAAGCAATAGACCCGGGTTCGACTC
* ** * * *
827278 CCGAACAAAAACAATTAGGATAATAAAGAAA-TAAGGGAAAAATT
130 CCG-GCAAATGCAATTACGATAGTAAA-AAATTAAGGGGAAAATT
* * * *
827322 TTGAAATGTAAAACGAGTAGTGTGTACGTGTTGTTCTTGATTATTTGAAACAAATAGTGTAAAGA
1 TTGAAAAGTAAAACGAATAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* * * * * * **
827387 AGAGGCCTTTGTAGTCCAA-TGGTTTGGATAATTGCCTTCCATGCAATGGACTGGGGTTCGACTC
66 AGAGGCGTTTGTAGTCCAACT-ATTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTCGACTC
* * * * * *
827451 TC-GTAAATGTAATTACGATATTAAAAAA-TAAGGAGAAATTT
130 CCGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
* * * * * * *
827492 TTGAAAAGTAAAATGAGTAGTATATTCGGGTTGTTCTTGATTATGTGAAATAAATAGTGT-GAGT
1 TTGAAAAGTAAAACGAATAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG-
* * * * * * *
827556 AAGAGGCGCTTGTAGTTCAA-TGGTTAGGATAATTGCCTTCTAAGCAATAGTCCCGGGTTTGACT
65 AAGAGGCGTTTGTAGTCCAACT-ATTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTCGACT
* * * *
827620 CCCGGCAAACGCAATCACAATAATAAAATAATTAAGGGGAAAATT
129 CCCGGCAAATGCAATTACGATAGTAAAA-AATTAAGGGGAAAATT
* * * * * * ** *
827665 TTAAAAAGTAAAACGAATAGTGTAAATGTTTTGTGCTTGATTATGTTAAATGAATAATGTAAAGA
1 TTGAAAAGTAAAACGAATAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* * *
827730 AGATGCGTTTGTAGTCCAA-TGGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGACTC
66 AGAGGCGTTTGTAGTCCAACT-ATTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTCGACTC
* * *
827794 CTGGCTAATGAAATTACGATAGTAAAAAATTAAGGGG-AAATT
130 CCGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
* * * * * *
827836 TTGAAAAGTAAAACGAGTAGTGTAT--GTGTTGTTCTTGATTATTTTAAATAAATAGTTTAAGGA
1 TTGAAAAGTAAAACGAATAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
*
827899 AGAGGCCTTTGTAGTCCA
66 AGAGGCGTTTGTAGTCCA
827917 GTTATTTGGA
Statistics
Matches: 1836, Mismatches: 415, Indels: 111
0.78 0.18 0.05
Matches are distributed among these distances:
164 2 0.00
165 98 0.05
166 11 0.01
167 6 0.00
168 45 0.02
169 160 0.09
170 239 0.13
171 270 0.15
172 513 0.28
173 450 0.25
174 8 0.00
175 1 0.00
176 33 0.02
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.30
Consensus pattern (172 bp):
TTGAAAAGTAAAACGAATAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
AGAGGCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTCGACTCC
CGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
Found at i:827225 original size:343 final size:342
Alignment explanation
Indices: 825440--835243 Score: 2887
Period size: 343 Copynumber: 28.6 Consensus size: 342
825430 AAATGCAATG
* * * * * *
825440 TTGAATAGTAAAACGAGTGGTGTATACGTGTTGGTCTTGATTATGAGAAACAAATAGTTTAAATA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAAA
* * * *
825505 AGAGGCGTTTGTAGTCCAACAATTAGGATAATTTCCTTCCAAGCAATAAACTCGAGTTCGACTCC
66 AGAGGCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAGCAATAGACTCGGGTTCGACTCC
* ** * * * *
825570 CGGTAAACACAATTACTATAGTAAAAAAATTAAGGGG--AGTTATTGAAAAGTAAAATGAGTAGT
131 CGGCAAATGCAATTACGATAGT-AAAAAATTAAGGGGAAAATT-TTGAAAAGTAAAACGAATAGT
** * * ** * * * * * * *
825633 GTATATGTGTTATTATCGATTATGTGAAACAAATAGTTTAAGGAAGAGGTGTTTGTAGTCCAACA
194 GTATACATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGA-GCGTTTGTAGTCCAACG
** *
825698 GTTAGGATAATTACCTTCCAAGCAATATG-CCCGGGTTCAACTCCTGCAAAT-ACAATTACGATA
258 GTTAGGATAATTACCTTCCAAGCAATA-GACCCGGGTTTGACTCCTGGAAATGA-AATTACGATA
*
825761 ATAAAAAATTAAGGGGAAAATT
321 GTAAAAAATTAAGGGGAAAATT
* * * *
825783 TTGAAAAGTAAAACGAATAGTGCATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAAA
* * * * * * ** *
825848 TGAGGCATTTGTAGTCCAACCATTAGGATAATTGCCACTCCAAACTGTAGTCTCGGGTTCGACTC
66 AGAGGCGTTTGTAGTCCAACTATTAGGATAATTACC-TTCCAAGCAATAGACTCGGGTTCGACTC
* ** ** * * * *
825913 TCGAAAAATTTAATTTCGATAGT-AAAAA--AAGTGGTAAATTTTGAATAGTAAAACGAATAGT-
130 CCGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTG
* * * * * * **
825974 TTTACCTTTTGTGCTTGATTATGTGAAACTAATACTGTAAA-AAGGAGGCATTTGTAATCCTATT
195 TATACATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAA-GA-GCGTTTGTAGTCCAACG
* * * * * *
826038 GTTAGGATAATTACCTTGCAAGCAATAGACCCAGGTTTGAGTCCCGGCAAACGAAATTACGATTG
258 GTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGACTCCTGG-AAATGAAATTACGATAG
*
826103 TAAAAAATTAAGGGGAAACTT
322 TAAAAAATTAAGGGGAAAATT
* * * * * * * * *
826124 TTGAAAAATAAAACAAATAGTATATATATACCTTTTGTGCTTGATAATATGAAACAAATAGTGT-
1 TTGAAAAGTAAAAC---GAGTA-GTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTA
* * * * * * * *
826188 --AAAGAGGAGTTTTTAGTCCAACTGTTAGGTTGATTGCCTTCCAAGAAATAGACTCTGGTTCGA
62 AAAAAGAGGCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAGCAATAGACTCGGGTTCGA
** * * * * *
826251 CTTACAGTAAATGCAATTACAATAGTACAAAATTAAGGGG-AAATTTTGGAAAAGTAAAACGATT
127 CTCCCGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTT-GAAAAGTAAAACGAAT
* * * * * * *
826315 AGCGTATGCCTTTTGTTCTTGATTATGTGAAATGAATACTATAAAGAAGAGGCATTTGTAGTCCA
191 AGTGTATACATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGA-GCGTTTGTAGTCCA
* * *** * * * *
826380 ACAGTTAGGATAATTGCCTTCCAAGCAATAGGGTCGGATTTGACTTCTGGCAAA-CACAATCACG
255 ACGGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGACTCCTGG-AAATGA-AATTACG
*
826444 ATAGT-AAAAATTAA-AGGAAAA--
318 ATAGTAAAAAATTAAGGGGAAAATT
* * * ** * ** *
826465 TTGAAAAGTAAAA--AAT-GTGTATACCT-TTCGTGCTCAATTATGTTAAAGGAATAGTGTAAAG
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTT-GTTCTTGATTATGTGAAACAAATAGTGTAAAA
* * * * * * * *
826526 AAGAGGTGTTTATGGTCCAAC-AGTTAGGATAATTACATTTCAGGCAATAAACCCGGGTTCGACT
65 AAGAGGCGTTTGTAGTCCAACTA-TTAGGATAATTACCTTCCAAGCAATAGACTCGGGTTCGACT
** * * * * * *
826590 CCCAACAAATGTAACTACGATAGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAAGGAGTAGA
129 CCCGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGT
* * * * * * * *
826655 GTAAACATATTGTTCTTGATTATCTAAAATGAATAGTGTAAGGAAGAGGCGTTTGTAGTCCAACG
194 GTATACATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGA-GCGTTTGTAGTCCAACG
* * ** * * * *
826720 ATTATGATAATTTTCTTCCAAGCAATAGATCCGGGTTCGACTCCAGGAAAACT-CAATTACGATA
258 GTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGACTCCTGG-AAA-TGAAATTACGATA
* *
826784 GTTAAAAATTAAGGGAAAAATT
321 GTAAAAAATTAAGGGGAAAATT
* * * * *
826806 TTGAAAAGTAAAATGAATAGTGTATATGTGTTGTTCTTGATTATGTGAAACAAATAGTTTAAAGA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAAA
* * * *
826871 AGAGTCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAACAATAGTCTTGGGTTCGACTCC
66 AGAGGCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAGCAATAGACTCGGGTTCGACTCC
* * * * * * *
826936 CGGCAAACGCAATCACAATAATAAAATAATTAAGGGGAAACTTTTAAAAAGTAAAACGAATAGCG
131 CGGCAAATGCAATTACGATAGTAAAA-AATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTG
* ** * *
827001 TAAACATTTTGTGCTTGATTATGTGAAATTAATAATGTAAAGAAGATG-GTTTGTAGTCCAATGG
195 TATACATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGA-GCGTTTGTAGTCCAACGG
* *
827065 TTAGGATAATTACCTTCCAAGCAATAGACCCGGGATTGAC-CCTGGATAATGTAATTACGATAGT
259 TTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGACTCCTGGA-AATGAAATTACGATAGT
* **
827129 AAAAACTTAAGGGGAATTTT
323 AAAAAATTAAGGGGAAAATT
* *
827149 TTGTAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAAA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAAA
* * * * * * * * *
827214 ATAGGCGTTTGTAGTCTAACGATTAGAATAATCT-CTTTCCAAGTAATAGGCCCGGGTTCTACTC
66 AGAGGCGTTTGTAGTCCAACTATTAGGATAAT-TACCTTCCAAGCAATAGACTCGGGTTCGACTC
* ** * * * * *
827278 CCGAACAAAAACAATTAGGATAATAAAGAAA-TAAGGGAAAAATTTTGAAATGTAAAACGAGTAG
130 CCG-GCAAATGCAATTACGATAGTAAA-AAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAG
* * * * * * * * *
827342 TGTGTACGTGTTGTTCTTGATTATTTGAAACAAATAGTGTAAAGAAGAGGCCTTTGTAGTCCAAT
193 TGTATACATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGA-GCGTTTGTAGTCCAAC
* * * * ** * * *
827407 GGTTTGGATAATTGCCTTCCATGCAATGGACTGGGGTTCGACT-CTCGTAAATGTAATTACGATA
257 GGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGACTCCT-GGAAATGAAATTACGATA
* * *
827471 TTAAAAAA-TAAGGAGAAATTT
321 GTAAAAAATTAAGGGGAAAATT
* * * * * * **
827492 TTGAAAAGTAAAATGAGTAGTATATTCGGGTTGTTCTTGATTATGTGAAATAAATAGTGTGAGTA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAAA
* * * * * * * *
827557 AGAGGCGCTTGTAGTTCAA-TGGTTAGGATAATTGCCTTCTAAGCAATAGTCCCGGGTTTGACTC
66 AGAGGCGTTTGTAGTCCAACT-ATTAGGATAATTACCTTCCAAGCAATAGACTCGGGTTCGACTC
* * * * *
827621 CCGGCAAACGCAATCACAATAATAAAATAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATAGT
130 CCGGCAAATGCAATTACGATAGTAAAA-AATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGT
* ** * * * *
827686 GTAAATGTTTTGTGCTTGATTATGTTAAATGAATAATGTAAAGAAGATGCGTTTGTAGTCCAATG
194 GTATACATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGA-GCGTTTGTAGTCCAACG
*
827751 GTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGACTCCTGGCTAATGAAATTACGATAG
258 GTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGACTCCTGG-AAATGAAATTACGATAG
827816 TAAAAAATTAAGGGG-AAATT
322 TAAAAAATTAAGGGGAAAATT
* * * * **
827836 TTGAAAAGTAAAACGAGTAGTGTAT--GTGTTGTTCTTGATTATTTTAAATAAATAGTTTAAGGA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAAA
* * *
827899 AGAGGCCTTTGTAGT-C--C----A-G----TTA--TT--------TGGA-T--GGTTCGACTCT
66 AGAGGCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAGCAATAGACTCGGGTTCGACTCC
* * * * *** * * *
827939 AGGTAAATGTAATTACGATATTAAAAAATTAAGGGGATTTTTTTGAAAATTAAAATGAATATTGT
131 CGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGT
* * * ** * *
828004 ATACCTTTCGTGCTTGATTATGTGAAACAAATTGTGTAAAGAAGAGGCGTTAGTAGTCTAACGGT
196 ATACATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGA-GCGTTTGTAGTCCAACGGT
* * * * * * * * *
828069 TATGATAATTGCCTTCCAATCAATAGACTCGTG-TCGACTCCCGGAAAATGTAATTACAATAGTA
260 TAGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGACTCCTGG-AAATGAAATTACGATAGTA
*
828133 AAAAATTAAGGGGAAAATA
324 AAAAATTAAGGGGAAAATT
* * *
828152 TTGAAAAGTAAAACGAGTAGTGTATAGGTGTTGTTCTTGATTATGTGAAATAAATAGTGTAAAGA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAAA
* * * * ** * * **
828217 AGAGGCATTTGTAGTCCAACCATTAGGATAATTGCATCATTCAAAATAGTAGACCCAAGTTCGAC
66 AGAGGCGTTTGTAGTCCAACTATTAGGATAATT--A-CCTTCCAAGCAATAGACTCGGGTTCGAC
* * * * * * *
828282 TCGCGGAAAATGCAATTTCGATAGTGAGAAATTAA-GTG-AAATTTTGAAAAGTAAAATGAATAG
128 TCCCGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAG
* * * * * * * *
828345 TTTTTACAGTTTGTGCTTGATTATGTCAAACTAATACTGTAAAGAAGAGGCATTTGTAGTCCTAT
193 TGTATACATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGA-GCGTTTGTAGTCCAAC
* * * * * * * * * * *
828410 TGTTAGGATAATTGCCTTACAAGCAATCGACCTGGGTTTGAGTCCCGATAAACGAAATTATGATT
257 GGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGACTCCTG-GAAATGAAATTACGATA
828475 GTAAAAAATTAAGGGGAAAATT
321 GTAAAAAATTAAGGGGAAAATT
* * * * * * * * * *
828497 TTGAAAAATAAAACCAATAGTATATATATACCTTTTGTGCTTGATAATATGAAATAAATAGTGT-
1 TTGAAAAGTAAAA-C--GAGTA-GTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTA
* * ** * * ** *
828561 --AAAGAGGAGTTTTTAGTCCAACGGTTAGGATGATTGCCTTCCAAGCAATAGACTCTAGTTTGA
62 AAAAAGAGGCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAGCAATAGACTCGGGTTCGA
**** * * * * *
828624 CTTGATGCAAATGTAATTACAATAGTAAAATAA-TAAGGGGAAAATTTGGAAAAGTAAAATGATT
127 CTCCCGGCAAATGCAATTACGATAGTAAAA-AATTAAGGGGAAAATTTTGAAAAGTAAAACGAAT
* * * * * *
828688 AGCGTATATATATTTTATTCTTAATTATGTGAAACGAATACTGTAAAGAATAGGCGTTTGTAGTC
191 A--GTGTATACATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGA-GCGTTTGTAGTC
* * ** * *
828753 CAACAGTTAGGATAAATT-CCTTCCAAGCAATAGGCCCGGGTTTGACTTTTGGCAAACGGAATTA
253 CAACGGTTAGGAT-AATTACCTTCCAAGCAATAGACCCGGGTTTGACTCCTGG-AAATGAAATTA
* *
828817 CGATTGTAAAAAGTTAAGGGGAAAATT
316 CGATAGTAAAAAATTAAGGGGAAAATT
* * * * * * *
828844 TTGAAAAGAAAAACAAATAGTATATACCTTTTGTGCTTGATTATGTGAAACAAATAGTGTAAAAA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAAA
** * * ** * *
828909 ATG-GGTTTTTTTAGTTCAACGGTTAGG---ATGA--TT----GC-CT-GA--C----TC-ACT-
66 A-GAGGCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAGCAATAGACTCGGGTTCGACTC
* * * * * ** * *
828954 ---GCAAATGTAATTACAATAGTAAAATATTAAAGGGAGAATTTTGAAATTTAAAATGAATAATA
130 CCGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGT-
* * * * ***** * ** ** * *
829016 TTAAATAGATTTCT-TTCTTTATT-T-TTTTTGGCAT-CT-TAATCATTA----AT-TAAT--AA
194 GT--ATACATTT-TGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGAGCGTTTGTAGTCCAA
** * ** * * * * ** **** *
829069 -TTTTA--AT-ATTA--ATAAAAG--GTA-A---TGGTTGGGCTTGGTGG-AAT-AGTCGAGCCA
256 CGGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGAC-TCCTGGAAATGAAATTA-CGA
* * *** *
829120 -AGAAAAATATATATTAGATATAAAATGAG
319 TAGTAAAA-A-AT-TAAG-GGGAAAAT--T
* * * * * * * *** * * *
829149 TTGAAACG--AAAGGAG-AATAGTATACATTTTAAATATCACCTGATTCCATCAATATACATAGT
1 TTGAAAAGTAAAACGAGTAGT-GTATACGTGTT--GT-T--CTTGATTATGTGAA-ACAAATAGT
* ** * ** * * **
829211 GTAATCAAA-TTG-ATTCCTA--CCTTAAGC-ATT-GGAT--CT-CTTGTCTC-AGTTA-AGA--
59 GTAA-AAAAGAGGCGTTTGTAGTCC--AA-CTATTAGGATAATTACCT-TC-CAAGCAATAGACT
* * * * **
829263 -GGGGTCG--T---GGAAAGAACGTGTAGTT-CTTGATTATGTGAAACAAATAGTATA-AAGATA
118 CGGGTTCGACTCCCGG-CA-AA--TGCAATTAC--GA-TA-GT-AAA-AAAT--TA-AGGGGA-A
** * ** ** *
829320 AGGCGTTTG--TAGTCCAACGGTTAG-G-ATAC-TTGCTTCCAAGGAATAGAACCAGGTTTGACT
169 A--ATTTTGAAAAGTAAAACGAATAGTGTATACATT--TT-----G--T-G---C----TTGATT
* ** * * * * * * ***
829380 CTCCGCAAACACAATTACGATAGTAAAAAATTAAGGGAAAATTTTGAAAAGT-AAATCGAAAAGT
215 ATGTG-AAAC-GAA-TAC--T-GTAAAGAA--GAGCG-----TTTG--TAGTCCAA-CGGTTAG-
* * * ***** * ** * **
829444 G-T-A-TACCTTTCATGCTCAAGTAAATAAAAG---GAATAGTGTAAA-GAAGA-GGCGTTTATA
263 GATAATTACCTTCCAAG--CAA-TAGACCCGGGTTTGACTCCTGGAAATGAA-ATTACG---ATA
* *** *
829501 GTCCAATGGTT-A--GGATAATT
321 GT-AAAAAATTAAGGGGAAAATT
* ** * * * ** * ** ** ** *
829521 ACCTTCCAAGCAA-TAGACCCGGGCTCGACTCCCAGCAAATACAAGAATGATAGTAAAAAATTTA
1 ---TT-GAA--AAGTA-AAACGAG-T--AGT----G--TATACGTG-TTG-TTCTTGATTATGT-
** ** * * * * * * ** * ** * * **
829585 GGGGA-AAATTTTGAAAAGAAAAATGAGTAGTGTA-TACATGTTGTTCTTGATTATGTGAAACGA
47 -GAAACAAATAGTGTAAA-AAAGAGGCGT-TTGTAGTCCA-ACTATT-AGGATAAT-T--ACCTT
** * * * * ** * ** * * * ** * * * *
829648 ATAGTGTAA-AGAATAGGCGTTAATAGTCCAATG-ATTATGATAATTTCCTTCCAAGCAATAGAC
104 CCA-AGCAATAGACTCGG-GTT-CGACTCC-CGGCA-AATG-CAATTACGAT---AGTAAAAAAT
*** **** * *** * * * * * * ** * ****
829711 CCCGGTTTGACTCCCGGCAAACA-CAATTAC-TATAGT-AAAAAATTAAGGGGAAAATT-T-TGA
160 TAAGGGGAAAAT-TTTG-AAA-AGTAA-AACGAATAGTGTATACATTTTGTGCTTGATTATGTGA
* * * ** * * ** * * * **
829771 AAAGTAAAACGAGTAGTGTATAG-GTGTTGT--T-C-TTGATTATGTGAAACAATTA-GTTTAAA
221 AACG-AATAC-TGTAAAGAAGAGCGT-TTGTAGTCCAACGGTTA-G-G--ATAATTACCTTCCAA
* * * * *** * * *** ***
829830 G-AAGAGGCGCTAGTAGTCCAACAAT-TTGGATAATTG-CATT-CGAT-GTAATGGA-CCCGGGT
279 GCAATAGAC-C-CG-GGTTTGAC--TCCTGGA-AA-TGAAATTACGATAGTAAAAAATTAAGGG-
*** *
829889 TCGACTCT
336 GAAAAT-T
** * * * ** * * * * * **
829897 CGGTAAATGTAATTACGA-TATTAAAAAATTAAGGGGAATT-TT-TTGA-AAAGTAAAATGAATA
1 TTG-AAAAGTAA-AACGAGTAGT---GTA-T-ACGTG--TTGTTCTTGATTATGTGAAACAAATA
**** ** * * * * ***
829958 GTGTAAATATTTTGTGCTTGATTATGTGAAACGAA-TAATGTAAAAAAGACACTTTTGTAGTCCA
57 GTGTAAA-AAAGAG-GC--G-TT-TGT-AGTCCAACT-AT-T----AGGATAATTACCT--TCCA
* ** * **** * ***
830022 ATGGTTAGGAGAATTACCTTCCAAGCAATAGACCCGGGTTTGACTCCTGGCTAATGTA--ATTAC
107 A--G-CAATAGACTCGGGTT-C--G-ACT---CCC--G---G-CAAAT-GC-AAT-TACGA-TA-
** * * * *
830085 GATAGTAAAAAATTAAGGCGG-ATTTTTTGAAAAGTAAAACGAGTGGTGTATACATGTTGTTCTT
151 G-TA--AAAA-ATTAAGG-GGAAAATTTTGAAAAGTAAAACGAATAGTGTATACATTTTGTGCTT
* * * * * * * * *
830149 TATTATGTGAAACGAATAGTGTACACAATAGGCGTTTGTAGTCTAACGATTAGGATAATTTCTTT
211 GATTATGTGAAACGAATACTGTAAAGAAGA-GCGTTTGTAGTCCAACGGTTAGGATAATTACCTT
* * * * * ** * *
830214 CAAAGCAATA-AGCCAGAGTTCT-ACTCCCGACAAAAAAAATTAGGATAGTAAAGAATTAA-GGG
275 CCAAGCAATAGA-CCCGGGTT-TGACTCCTG-GAAATGAAATTACGATAGTAAAAAATTAAGGGG
830276 AAAATT
337 AAAATT
* * * * * * *
830282 TTGAAAAGCAAAAAGAGTAATGTGTACGTGTTGTTCTTGATTATTTGAAATAAATAGTTTAAAGA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAA-A
* * * * * * *
830347 AA-AGGCCTTTGTAGTCTAGCGGT-TTA-GATAATTCCCTTCTATGTAATAGA-TCAGGGTTCGA
65 AAGAGGCGTTTGTAGTCCAAC--TATTAGGATAATTACCTTCCAAGCAATAGACTC-GGGTTCGA
* * * * * *
830408 CTCTCGGTAAATGTAATTACTATATTAAAAAATTAAGTGGAAAATTTTGAAAAGTAAAACGAATA
127 CTCCCGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATA
* * * * *
830473 GTGTATACCTTTCGTGCTTGATTATTTG--A--AA-A--G--AAG--G-TC-TTTGTAGTCTAAC
192 GTGTATACATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGAGCGTTTGTAGTCCAAC
* * ** * * * *** *
830525 GGTTAGGATAATTGCCTTCCAAGCAATAGACCTGACTTCGACTCCCGACAAATGCGTTTACGATT
257 GGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGACTCCTG-GAAATGAAATTACGATA
*
830590 GTAAAAAACTAA-GGGACAAATT
321 GTAAAAAATTAAGGGGA-AAATT
* * * * * * * * *
830612 TAGGAAAGTAAAACAAATAGTGTATA-GATTTTGTTCTTGATTATGTAAAATAAATAGTTTAAAG
1 TTGAAAAGTAAAACGAGTAGTGTATACG-TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAA
* * * * * * * *
830676 AAGAGGTGTTTGTAGTCTAACTGTTAAGATAATTGCCTTCAAAGCAATATACCCGGGTTCGACTC
65 AAGAGGCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAGCAATAGACTCGGGTTCGACTC
* * ** * *
830741 GCGG-ATAATGTAATTTTGATAGT-AAAAATTAAGTGAAAAATTTTGAAAAGTAAAACGAATAGT
130 CCGGCA-AATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGT
* * * * * * * *
830804 TTTTACCTTTTGTACTTGATTATGTGAAACTAATATTGTAAAGAA-ATGGCATTAT-TAGTCCCA
194 GTATACATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGA--GCGTT-TGTAGTCCAA
** * ** * * * * *
830867 TTGTTAGGATAATTGCCTTCCAATTAATAAACCCGGGTTTAAGTCCCCGCAAATGAAATTACGAT
256 CGGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGACT-CCTGGAAATGAAATTACGAT
* *
830932 TGTAAAACATTAAGGGG-AAATT
320 AGTAAAAAATTAAGGGGAAAATT
* * * * * * *
830954 TTTAAAA--AAATA--A--A---TATACCTTTTCTGCTTGATTATATGAAACAAATAGTGTAAAG
1 TTGAAAAGTAAA-ACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAA
* * * * *
831010 AAGAGGCGTTTGTAGTCCAA-TGGTTAGGATGATTGCCTTCCAACCAATAGACTCGGGTTCAACT
65 AAGAGGCGTTTGTAGTCCAACT-ATTAGGATAATTACCTTCCAAGCAATAGACTCGGGTTCGACT
** * * * * * * * * *
831074 TGCTGTAAATACAATTACAATAGCAAAAAATTAA-TGGAAAATTTGGAAAAGTAAAACGATTAGC
129 CCCGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGT
* * *
831138 GTATACCTTTTTGTGCTTGATTATGTGAAACAAATACTGTAAAGAAGAGGTGTTTGTAGTCCAAC
194 GTATA-CATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGA-GCGTTTGTAGTCCAAC
* * * * * *
831203 TGTTAGGATAAATT-CCTTCCAATCAATAGGCCCGAGTTTGAC-CTTTGGAAAATGCAATTACGA
257 GGTTAGGAT-AATTACCTTCCAAGCAATAGACCCGGGTTTGACTC-CTGG-AAATGAAATTACGA
* * * * *
831266 TTGTTAAAAGTTATGGGGAAATTT
319 TAGTAAAAAATTAAGGGGAAAATT
* * * * * * * * * *
831290 TTGAAGAGTAAAACAAATAGTATATACTTGTTATGCTTGATTATGTGAAACGAATTGTGTAAAGA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAAA
* ** * * * ** * *
831355 AGAGGCGTTTGTAGTCTAACGGTTAGGATAATTGCCTTCCAAGCAATATACCCGACTTCAACTCT
66 AGAGGCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAGCAATAGACTCGGGTTCGACTCC
* * ** * ** * *
831420 CGGTAAATACGTTTACGATAGTAAAAATTTAAGTTGAAAATTTTGAAAAGTAAAATGAGTAGTGT
131 CGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGT
* * * * * * * * *
831485 ATACGTCTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGATGAGGCATTTGTAGTCTAATGGT
196 ATACATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGA-GCGTTTGTAGTCCAACGGT
* * * * * **
831550 TAGGATAATTGCCTTCTAAGCAATAGACCTGGGTTCT-ACTCCTGATAAAAGAAATTTTGATAGT
260 TAGGATAATTACCTTCCAAGCAATAGACCCGGGTT-TGACTCCTG-GAAATGAAATTACGATAGT
*
831614 -AAAAATTAA-GGAAAAACTT
323 AAAAAATTAAGGGGAAAA-TT
* * * * * * * * * * *
831633 TT-AAAAATAAACCAAATAGTGTATACCTTTTGTTATTGATTATGAGAAGCGAATAGTGTAAAGA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAAA
* * * * * * * *
831697 GGAGGCGTTTGTTGTCTAAC-AGATACGATAATTGCCTTCCAAGCAATATAC-CTGGGTTCAACT
66 AGAGGCGTTTGTAGTCCAACTA-TTAGGATAATTACCTTCCAAGCAATAGACTC-GGGTTCGACT
** * * * * *
831760 TGCTGCAAATGCAATTACAATAGTAAAATAATTAAGGGGTACATTTTAAAAAGTAAAACGAATAG
129 CCCGGCAAATGCAATTACGATAGTAAAA-AATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAG
* * * * *
831825 TGTAAACATTTT-TGCTTGATTATGTGAAATC-AATAGTGTAAAGAAGACGAGTTCGTAAT-CAT
193 TGTATACATTTTGTGCTTGATTATGTGAAA-CGAATACTGTAAAGAAGA-GCGTTTGTAGTCCA-
* * * * * * * *
831887 ACGGTTAGGATAACTGCCTTCCAAGCAATAGACCTGGGTTTGACT-ATCGACAAACGCAATCACG
255 ACGGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGACTCCT-G-GAAATGAAATTACG
* * * **
831951 ATAATAAAAAAATAA-AGGAATTTTT
318 ATAGTAAAAAATTAAGGGGAA-AATT
* * * * * * *
831976 TTGAAAAGTAAAACAAATAGTGTTTACCT-TTCGTGCTTGATTATGTGAAACGAATAGTGTAAAG
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTT-GTTCTTGATTATGTGAAACAAATAGTGTAAAA
** * * * * * * *
832040 AAGAGGTATTTGTAGTCCAA-TGGTTAGGCTAATTACCTTACAAGCAACAGTCTTGGGTTTGACT
65 AAGAGGCGTTTGTAGTCCAACT-ATTAGGATAATTACCTTCCAAGCAATAGACTCGGGTTCGACT
* * * * * * * * *
832104 CCTGGTAAATG-ATTTACGATTGTAAAAACTTAAGGGAAAAATTCTGAAAAGTAAAACGAGTAAT
129 CCCGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGT
* ** * ** * * * * * * * *
832168 TTATATGTGTTGTTATTCATTACGTGAAACAAATAGTATTAATAAGAGGCCTTTGTAGTCCAACG
194 GTATACATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGA-GCGTTTGTAGTCCAACG
* ** * * * *
832233 GTTAGGATAATTGCCTTGTAAGCAATAGACCCGGGTTCGACTCCCGGCAAA-CACAATCACGATA
258 GTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGACTCCTGG-AAATGA-AATTACGATA
*
832297 GTAAAATAATTAAGGGGAAAATA
321 GTAAAA-AATTAAGGGGAAAATT
* * * * *
832320 TTGAAAAGTAAAATGAGTAGTGTATTCGTGTTGTTCTTGATTATGTGAAATAAATAGTTTAAATA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAAA
* ** * * * *
832385 AGAGGCGTTTGTAGTCTAACGGTTAGGATAAATGCCTTCCAAGCAATAGACCCAGGTTCGACTCC
66 AGAGGCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAGCAATAGACTCGGGTTCGACTCC
* ** * * * *
832450 TGGCAAACACAATTACGATAGTAAAAAATT-AGGGGGAGACTTTGAAAAGTAAAACGAGTAGTGT
131 CGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGT
** * * * * * * * * * * *
832514 ATA-GGTGTGCTTCTTTATTACGTGAAGCAAATA-TTTAAAAAATTAGGCATTTGTAGTCCATTC
196 ATACATTTTG-TGCTTGATTATGTGAAACGAATACTGTAAAGAA-GA-GCGTTTGTAGTCCA-AC
* * * * * **
832577 -GTTAGGATAATTGCATTCCAAACAATAGACCCAGGTTTGACTCGC-GGAAAATGCAATTTTGAT
257 GGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGACTC-CTGG-AAATGAAATTACGAT
* *
832640 AGTAAAAAATTAAGTGGTAAATT
320 AGTAAAAAATTAAGGGGAAAATT
* * * * * * * * * * *
832663 TTGATAAGTAAAACTAATAGTTTTTTTCCCTTTTGTGCTTAATTATGTGAAA-ATAATACTGTAA
1 TTGAAAAGTAAAACGAGTAG--TGTATACGTGTTGTTCTTGATTATGTGAAACA-AATAGTGTAA
* * * * * * * * * *
832727 AGAAGAGGTGTTTGTAGTCCTATTGTTAGAATAATTGCCTTGCAAGCAATAGACTCGGGTTTGAG
63 AAAAGAGGCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAGCAATAGACTCGGGTTCGAC
* * * * * * * * *
832792 TCTCGGTAAATGAAATTATGATTGTAAAACAAAT-A---G-------T--ATA-T-ATA--TATA
128 TCCCGGCAAATGCAATTACGATAGTAAAA-AATTAAGGGGAAAATTTTGAAAAGTAAAACGAATA
* * * * * * * * * * * *
832840 -TATATACCTTTTATGCTTGATAATATAAAACAAATAATGTAAA-TAG-GAGTTTTTAGTCCAAT
192 GTGTATACATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGAGCGTTTGTAGTCCAAC
* ** * * * * * * * *
832902 GGTTTGGATGTTTTCCTTGCAAGCAATAGACTCTGGTTTGACTTACTGCAAATGTAATTACAATA
257 GGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGAC-TCCTGGAAATGAAATTACGATA
*
832967 GTAAAAAATTAAGGGGAAAATA
321 GTAAAAAATTAAGGGGAAAATT
* * * * * * *
832989 TAGAAAAGTAAAACGATTAG-CTATACCTTTTGTTCTTGATTATGTGAAACAAATATTGTAAAGA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAAA
* * * * * * * **
833053 AGAGCCGTTTGTAGTCCAACTGTTAGGATAATTGCCTTCCAAGTAATAGGCTCGAGTTTGACTTA
66 AGAGGCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAGCAATAGACTCGGGTTCGACTCC
* ** * ** *
833118 TGGCAAACACAATTACGATAGTAAAATATTAA-GGGAAAA---TGAAAAAGTAAAATAAAAAGTG
131 CGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTG-AAAAGTAAAACGAATAGTG
* * * * ** * * * *
833179 CATACCTTTCGCGCTCAATTATGTGAAAGGAATAATGTAAAGAAGAGGCATTTGAAGTCCAACGG
195 TATACATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGA-GCGTTTGTAGTCCAACGG
* * * * ** * * *
833244 TTAGGATAATAACCTTCCAAGGAATAAACCCGGGTTCGACTCCTAACAAATGCAACTATGATAGT
259 TTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGACTCCT-GGAAATGAAATTACGATAGT
*
833309 AAAAAATTATGGGGAAAATT
323 AAAAAATTAAGGGGAAAATT
* * * * ** *
833329 TTAAAAAGTAAAAAGAGTAGTGTATACATGTTGTTCTTGATTATGTAAAATGAATAGTGTAAAGA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAAA
* * * *
833394 AGAGGCGTTTGTAGTCCAACGATTATGATAAATT-CCTTCCAAGCAATAGAGATCCAGGTTCGAC
66 AGAGGCGTTTGTAGTCCAACTATTAGGAT-AATTACCTTCCAAGCAATAGA-CT-CGGGTTCGAC
* ** * *
833458 TCCCGACAAACACAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAATGAGTAG
128 TCCCGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAG
* * * * * * *
833523 TGTATACGTGTTGTACTTGATTATGTGAAACAAATAGTTTAAAGAAGAGGCATTTGTAGTCCAAC
193 TGTATACATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGA-GCGTTTGTAGTCCAAC
* * * * * * * *
833588 GGTTTGGATAATTGCCTTTCATGCAATGGACTC-GGTTTGACT-CTCGATAAATGTAATTACGAT
257 GGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGACTCCT-G-GAAATGAAATTACGAT
* * *
833651 ATTAAAAAAATAAGGGAAAAATT
320 AGTAAAAAATTAAGGGGAAAATT
* * * ** *
833674 TTGAAAAGTAAAACGAGTAATGTATACTTGTTGTTCTTGATTATGTGAAAGAAATAGTGGGAATA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAAA
* * * * *
833739 AGAGGCATTTGTAGT-CAAATGATTATGA-AATTGCCTTCCAAGCAATAGA-TCTAGGTTCGACT
66 AGAGGCGTTTGTAGTCCAACT-ATTAGGATAATTACCTTCCAAGCAATAGACTC-GGGTTCGACT
* ** * * * * *
833801 CTCGGCAAACACAATCACAATAATAAAATAATCAAGGGGAAAATTTTAAAAAGTAAAACGAATAG
129 CCCGGCAAATGCAATTACGATAGTAAAA-AATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAG
* * * * * * *
833866 TGTAAACCTTTTGTCCTTGATTATGTGAAATGAATAATGTAAAGAAGATGTGTTTGTAGTCCAAT
193 TGTATACATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGA-GCGTTTGTAGTCCAAC
* * * ** ** ** *
833931 GGTTAAGATAATTACCTTCTAAGCAATATAATCGGGTTTGACTCCTTGCTAATGCGATTACAATA
257 GGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGACTCC-TGGAAATGAAATTACGATA
* *
833996 GTAACAAATTAAGGGGAAATTT
321 GTAAAAAATTAAGGGGAAAATT
* * * *
834018 TTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACGAATAGTTTAAAGA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAAA
* * * * *** * * * * *
834083 ATAGGCGTTTGTAGTCTAACGATTAGGATGATTTGTTTCTAAGCAATA-CCCCTAGGTTCTACTC
66 AGAGGCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAGCAATAGACTC-GGGTTCGACTC
** * * * *
834147 CCGGCAAAAACAAATTTAGGACAGTAAAAAATTAA-GGGAAATTTTTTGAAAAGTAAAACGAGTA
130 CCGGCAAATGC-AA-TTACGATAGTAAAAAATTAAGGGGAAA-ATTTTGAAAAGTAAAACGAATA
* * ** ** * * ** * * *
834211 GTTTGTATGTGATGTTCTTGATTATTTGAAATAAATAGTTTAAAGAAGAGCCCTTTGTAGTCCAA
192 GTGTATACATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGAG-CGTTTGTAGTCCAA
* * * ** * * * * * * *
834276 CGGTTTGGATAATTGCCTTACTTGAAATGGATCAGGGCTCGACT-CTCGGTAAATGTAATTACGA
256 CGGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGACTCCT-GG-AAATGAAATTACGA
* **
834340 TATTAAAAAATTAAGGGGAATTTT
319 TAGTAAAAAATTAAGGGGAAAATT
* * * * * ** * * *
834364 TTTAAAAGTAAAACGAATAGTGTATACCTTTTGTGCTTGATTATGTGAAATGAATTGTGCAAAGA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAAA
* * * * * *
834429 AGAGGTGTTAGTAGTCTAACGATTAGGATAATTACCTTCCAAGCAATAGACTCAGGTTTGACTCC
66 AGAGGCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAGCAATAGACTCGGGTTCGACTCC
** * * ** * *
834494 CGAAAAATGTAATTACGATAGTAAAATATTAAAAGGAAAATTTTGAAAAGTAAAAGGAGTAGT-T
131 CGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGT
** * * * * * * **
834558 ATAGGTGTCGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGCTTGTAGTCCAACCAT
196 ATACATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGA-GCGTTTGTAGTCCAACGGT
* ** * * * * ** *
834623 TAGGATAATTGCACATTCCAAATAGTAGACCAGGGTTCGACTTGCC-GAAAATTCAATTTCGATA
260 TAGGATAATT--ACCTTCCAAGCAATAGACCCGGGTTTGAC-T-CCTGGAAATGAAATTACGATA
* * *
834687 GTAAAAAATTATGTGGTAAATT
321 GTAAAAAATTAAGGGGAAAATT
** * * * * * * **
834709 TTGAAAAGTAAAGAAAATAGTATTTATATACCTTTTGTGCTTGATAAAATGAAACAAATAGTGT-
1 TTGAAAAGT--A-AAACGAGTA-GTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTA
** * * * * * * **
834773 --AAAGAGTAGTTTTTATTCCAA-TGGTTAGGATGATTGCCTTCCAAGAAATAGACTCTAGTTCG
62 AAAAAGAGGCGTTTGTAGTCCAACT-ATTAGGATAATTACCTTCCAAGCAATAGACTCGGGTTCG
** * * * * * * *
834835 ACTTGCTGCAAATGCAATTACAATAGTAAAATATTAAGTGGAAAATTTGGAAAAGTAAGACGATT
126 ACTCCCGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAAT
* * * *
834900 AGCGTATATC-TTTTGTTCTTAATTATGTGAAACGAATACTATAAAGAAGAGGCGTTTGTAGTCC
191 AGTGTATA-CATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGA-GCGTTTGTAGTCC
* * * ** * **
834964 AACTGTTAGGATAAATT-CCTTCCAAGCAATAGGCCCGAGTTTGACTTATGAAAAACACAATTAC
254 AACGGTTAGGAT-AATTACCTTCCAAGCAATAGACCCGGGTTTGACTCCTGGAAATGA-AATTAC
* * *
835028 GATTGTAAAAAGTTCAGGGGAAAATT
317 GATAGTAAAAAATTAAGGGGAAAATT
* * * * * *
835054 TTGAAAAGTAAAACAAATAGTATATACCT-TTCG-TGTTGATTATGTGAAACAAATAGTGTAAGA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTT-GTTCTTGATTATGTGAAACAAATAGTGTAAAA
* * * * ** * * * *
835117 AAGGGGTGTTTTTAGTTCAACGGTTAGGATGATTGCCTTCCAAGCAATAAACCCGGGTTCGACTC
65 AAGAGGCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAGCAATAGACTCGGGTTCGACTC
* * * * * **
835182 ACTGCAAATGCAATTACAATAGTAAAATATTAAGGGGAGAATTTTGAAATTTAAAACGAATA
130 CCGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATA
835244 ATGTTAAATA
Statistics
Matches: 6997, Mismatches: 1906, Indels: 1116
0.70 0.19 0.11
Matches are distributed among these distances:
299 6 0.00
300 5 0.00
301 7 0.00
302 9 0.00
303 18 0.00
305 10 0.00
306 1 0.00
307 6 0.00
308 20 0.00
309 14 0.00
310 6 0.00
312 3 0.00
313 2 0.00
314 1 0.00
315 43 0.01
316 142 0.02
317 29 0.00
318 51 0.01
319 2 0.00
320 4 0.00
321 8 0.00
322 11 0.00
323 116 0.02
324 56 0.01
325 23 0.00
326 97 0.01
327 5 0.00
328 6 0.00
329 170 0.02
330 139 0.02
331 2 0.00
332 9 0.00
333 10 0.00
334 168 0.02
335 120 0.02
336 22 0.00
337 234 0.03
338 25 0.00
339 15 0.00
340 203 0.03
341 225 0.03
342 423 0.06
343 1282 0.18
344 1216 0.17
345 737 0.11
346 535 0.08
347 211 0.03
348 24 0.00
349 68 0.01
350 1 0.00
351 5 0.00
353 1 0.00
354 1 0.00
356 2 0.00
359 2 0.00
360 1 0.00
362 4 0.00
363 16 0.00
364 5 0.00
365 6 0.00
366 8 0.00
367 8 0.00
368 16 0.00
369 9 0.00
370 6 0.00
371 8 0.00
372 12 0.00
373 19 0.00
374 21 0.00
375 7 0.00
376 16 0.00
377 15 0.00
378 7 0.00
379 15 0.00
380 24 0.00
381 6 0.00
382 1 0.00
383 7 0.00
384 22 0.00
385 22 0.00
386 42 0.01
387 35 0.01
388 17 0.00
389 16 0.00
390 3 0.00
391 8 0.00
394 2 0.00
397 7 0.00
398 1 0.00
399 1 0.00
400 3 0.00
401 2 0.00
402 3 0.00
403 8 0.00
404 7 0.00
405 5 0.00
406 4 0.00
408 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (342 bp):
TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAAA
AGAGGCGTTTGTAGTCCAACTATTAGGATAATTACCTTCCAAGCAATAGACTCGGGTTCGACTCC
CGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGT
ATACATTTTGTGCTTGATTATGTGAAACGAATACTGTAAAGAAGAGCGTTTGTAGTCCAACGGTT
AGGATAATTACCTTCCAAGCAATAGACCCGGGTTTGACTCCTGGAAATGAAATTACGATAGTAAA
AAATTAAGGGGAAAATT
Found at i:828216 original size:171 final size:172
Alignment explanation
Indices: 827943--828945 Score: 840
Period size: 173 Copynumber: 5.8 Consensus size: 172
827933 GACTCTAGGT
* *** * * * *
827943 AAATGTAATTACGATATTAAAAAATTAAGGGGATTTTTTTGAAAATTAAAATGAATATTGTATAC
1 AAATGTAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTATATAC
* * * * *
828008 CTTTCGTGCTTGATTATGTGAAACAAATTGTGTAAAGAAGAGGCGTTAGTAGTCTAACGGTTATG
66 CTTTTGTGCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGG
* * *
828073 ATAATTGCCTTCCAATCAATAGACTCGTG-TCGACTCCCGGA
131 ATAATTGCCTTCCAAGCAATAGACCCGTGTTTGACTCCCGGA
* * * * *
828114 AAATGTAATTACAATAGTAAAAAATTAAGGGGAAAATATTGAAAAGTAAAACGAGTAGTGTATAG
1 AAATGTAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTATATAC
* * * * * **
828179 GTGTTGTTCTTGATTATGTGAAATAAATAGTGTAAAGAAGAGGCATTTGTAGTCCAACCATTAGG
66 CTTTTGTGCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGG
* ** * ** * *
828244 ATAATTGCATCATTCAAAATAGTAGACCCAAGTTCGACTCGCGGA
131 ATAATTGC--C-TTCCAAGCAATAGACCCGTGTTTGACTCCCGGA
* * * * * * * *
828289 AAATGCAATTTCGATAGTGAGAAATTAA-GTG-AAATTTTGAAAAGTAAAATGAATAGTTTTTAC
1 AAATGTAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTATATAC
** * * * * * **
828352 AGTTTGTGCTTGATTATGTCAAACTAATACTGTAAAGAAGAGGCATTTGTAGTCCTATTGTTAGG
66 CTTTTGTGCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGG
* * * * *
828417 ATAATTGCCTTACAAGCAATCGACCTGGGTTTGAGTCCC-GA
131 ATAATTGCCTTCCAAGCAATAGACCCGTGTTTGACTCCCGGA
* * * * * *
828458 TAAACGAAATTATGATTGTAAAAAATTAAGGGGAAAATTTTGAAAAATAAAACCAATAGTATATA
1 -AAATGTAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAG----TA
* * * * *
828523 TATACCTTTTGTGCTTGATAATATGAAATAAATAGTGT--A-AAGAGGAGTTTTTAGTCCAACGG
61 TATACCTTTTGTGCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGG
* * **** *
828585 TTAGGATGATTGCCTTCCAAGCAATAGACTC-TAGTTTGACTTGATGC
126 TTAGGATAATTGCCTTCCAAGCAATAGACCCGT-GTTTGACTCCCGGA
* * * *
828632 AAATGTAATTACAATAGTAAAATAA-TAAGGGGAAAATTTGGAAAAGTAAAATGATTAGCGTATA
1 AAATGTAATTACGATAGTAAAA-AATTAAGGGGAAAATTTTGAAAAGTAAAACGAATA--GTATA
** * * * * * * *
828696 TATATTTTATTCTTAATTATGTGAAACGAATACTGTAAAGAATAGGCGTTTGTAGTCCAACAGTT
63 TACCTTTTGTGCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTT
* * *** *
828761 AGGATAAATT-CCTTCCAAGCAATAGGCCCGGGTTTGACTTTTGGC
128 AGGAT-AATTGCCTTCCAAGCAATAGACCCGTGTTTGACTCCCGGA
* * * * * *
828806 AAACGGAATTACGATTGTAAAAAGTTAAGGGGAAAATTTTGAAAAGAAAAACAAATAGTATATAC
1 AAATGTAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTATATAC
* ** * *
828871 CTTTTGTGCTTGATTATGTGAAACAAATAGTGTAAAAAATG-GGTTTTTTTAGTTCAACGGTTAG
66 CTTTTGTGCTTGATTATGTGAAACAAATAGTGTAAAGAA-GAGGCGTTTGTAGTCCAACGGTTAG
*
828935 GATGATTGCCT
130 GATAATTGCCT
828946 GACTCACTGC
Statistics
Matches: 647, Mismatches: 161, Indels: 47
0.76 0.19 0.05
Matches are distributed among these distances:
169 2 0.00
170 39 0.06
171 151 0.23
172 85 0.13
173 184 0.28
174 118 0.18
175 38 0.06
176 30 0.05
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (172 bp):
AAATGTAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTATATAC
CTTTTGTGCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGG
ATAATTGCCTTCCAAGCAATAGACCCGTGTTTGACTCCCGGA
Found at i:830497 original size:172 final size:171
Alignment explanation
Indices: 829285--835243 Score: 4302
Period size: 172 Copynumber: 34.9 Consensus size: 171
829275 AGAACGTGTA
* *
829285 GTTCTTGATTATGTGAAACAAATAGTATAAAGATA-AGGCGTTTGTAGTCCAACGGTTAGGATAC
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGA-AGAGGCGTTTGTAGTCCAACGGTTAGGATAA
* * * * * **
829349 TTG-CTTCCAAGGAATAGAACCAGGTTTGACTCTCCGCAAACACAATTACGATAGTAAAAAATTA
65 TTGCCTTCCAAGCAATAGACCCGGGTTCGACTCTCGGCAAATGCAATTACGATAGTAAAAAATTA
* *
829413 A-GGGAAAATTTTGAAAAGTAAATCGAAAAGTGTATACCTTT
130 AGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCTTT
* * ** * ** * ** * *
829454 CATGCTCAAGTAAATAAAAGGAATAGTGTAAAGAAGAGGCGTTTATAGTCCAATGGTTAGGATAA
1 -GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAA
* * * * * ** * *
829519 TTACCTTCCAAGCAATAGACCCGGGCTCGACTCCCAGCAAATACAAGAATGATAGTAAAAAATTT
65 TTGCCTTCCAAGCAATAGACCCGGGTTCGACTCTCGGCAAATGCAATTACGATAGTAAAAAATTA
* * * *
829584 AGGGGAAAATTTTGAAAAGAAAAATGAGTAGTGTATACATGTT
130 AGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCT-TT
* * ** * * *
829627 GTTCTTGATTATGTGAAACGAATAGTGTAAAGAATAGGCGTTAATAGTCCAATGATTATGATAAT
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * * ** *
829692 TTCCTTCCAAGCAATAGACCCCGGTTTGACTCCCGGCAAACACAATTACTATAGTAAAAAATTAA
66 TGCCTTCCAAGCAATAGACCCGGGTTCGACTCTCGGCAAATGCAATTACGATAGTAAAAAATTAA
* **
829757 GGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATAGGTGTT
131 GGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCT-TT
* * * * ** *
829799 GTTCTTGATTATGTGAAACAATTAGTTTAAAGAAGAGGCGCTAGTAGTCCAACAATTTGGATAAT
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * * * * * *
829864 TGCATTCGATGTAATGGACCCGGGTTCGACTCTCGGTAAATGTAATTACGATATTAAAAAATTAA
66 TGCCTTCCAAGCAATAGACCCGGGTTCGACTCTCGGCAAATGCAATTACGATAGTAAAAAATTAA
** * *
829929 GGGGAATTTTTTGAAAAGTAAAATGAATAGTGTAAATA-TTTT
131 GGGGAAAATTTTGAAAAGTAAAACGAATAGTGT--ATACCTTT
* * * * ** * * *
829971 GTGCTTGATTATGTGAAACGAATAATGTAAAAAAGACACTTTTGTAGTCCAATGGTTAGGAGAAT
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * *
830036 TACCTTCCAAGCAATAGACCCGGGTTTGACTC-CTGGCTAATGTAATTACGATAGTAAAAAATTA
66 TGCCTTCCAAGCAATAGACCCGGGTTCGACTCTC-GGCAAATGCAATTACGATAGTAAAAAATTA
** * * *
830100 AGGCGG-ATTTTTTGAAAAGTAAAACGAGTGGTGTATACATGTT
130 AGG-GGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCT-TT
* * * * * * *
830143 GTTCTTTATTATGTGAAACGAATAGTGTACACAATAGGCGTTTGTAGTCTAACGATTAGGATAAT
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * * * * * * *** * *
830208 TTCTTTCAAAGCAATA-AGCCAGAGTTCTACTCCCGACAAAAAAAATTAGGATAGTAAAGAATTA
66 TGCCTTCCAAGCAATAGA-CCCGGGTTCGACTCTCGGCAAATGCAATTACGATAGTAAAAAATTA
* * * * * *
830272 A-GGGAAAATTTTGAAAAGCAAAAAGAGTAATGTGTACGTGTT
130 AGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCT-TT
* * * * * * *
830314 GTTCTTGATTATTTGAAATAAATAGTTTAAAGAAAAGGCCTTTGTAGTCTAGCGGTTTA-GATAA
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGG-TTAGGATAA
* * * * * * * * * *
830378 TTCCCTTCTATGTAATAGATCAGGGTTCGACTCTCGGTAAATGTAATTACTATATTAAAAAATTA
65 TTGCCTTCCAAGCAATAGACCCGGGTTCGACTCTCGGCAAATGCAATTACGATAGTAAAAAATTA
*
830443 AGTGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCTTT
130 AGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCTTT
* * * *
830485 CGTGCTTGATTA--T--------T--TGAAAAGAAG-GTC-TTTGTAGTCTAACGGTTAGGATAA
1 -GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAA
* ** * * ** * *
830536 TTGCCTTCCAAGCAATAGACCTGACTTCGACTCCCGACAAATGCGTTTACGATTGTAAAAAACTA
65 TTGCCTTCCAAGCAATAGACCCGGGTTCGACTCTCGGCAAATGCAATTACGATAGTAAAAAATTA
* * * **
830601 A-GGGACAAATTTAGGAAAGTAAAACAAATAGTGTATAGATTTT
130 AGGGGA-AAATTTTGAAAAGTAAAACGAATAGTGTATA-CCTTT
* * * * * * *
830644 GTTCTTGATTATGTAAAATAAATAGTTTAAAGAAGAGGTGTTTGTAGTCTAACTGTTAAGATAAT
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * * **
830709 TGCCTTCAAAGCAATATACCCGGGTTCGACTCGCGG-ATAATGTAATTTTGATAGT-AAAAATTA
66 TGCCTTCCAAGCAATAGACCCGGGTTCGACTCTCGGCA-AATGCAATTACGATAGTAAAAAATTA
* * * *
830772 AGTGAAAAATTTTGAAAAGTAAAACGAATAGTTTTTACCTTTT
130 AGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACC-TTT
* * * * * **
830815 GTACTTGATTATGTGAAACTAATATTGTAAAGAA-ATGGCATTAT-TAGTCCCATTGTTAGGATA
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGA-GGCGTT-TGTAGTCCAACGGTTAGGATA
** * ** * * * * * *
830878 ATTGCCTTCCAATTAATAAACCCGGGTTTAAGTCCCCGCAAATGAAATTACGATTGTAAAACATT
64 ATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCTCGGCAAATGCAATTACGATAGTAAAAAATT
* *
830943 AAGGGG-AAATTTT-TAAA--AAAA-TAA-A---TATACCTTT
129 AAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCTTT
* * *
830977 -TCTGCTTGATTATATGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAATGGTTAGGATG
1 GT-T-CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATA
* * * * * * * *
831041 ATTGCCTTCCAACCAATAGACTCGGGTTCAACT-TGCTGTAAATACAATTACAATAGCAAAAAAT
64 ATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCT-CGGCAAATGCAATTACGATAGTAAAAAAT
* * * *
831105 TAA-TGGAAAATTTGGAAAAGTAAAACGATTAGCGTATACCTTTTT
128 TAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACC--TTT
* * * *
831150 GTGCTTGATTATGTGAAACAAATACTGTAAAGAAGAGGTGTTTGTAGTCCAACTGTTAGGATAAA
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT-AA
* * * * * * * * *
831215 TT-CCTTCCAATCAATAGGCCCGAGTTTGAC-CTTTGGAAAATGCAATTACGATTGTTAAAAGTT
65 TTGCCTTCCAAGCAATAGACCCGGGTTCGACTC-TCGGCAAATGCAATTACGATAGTAAAAAATT
* * * * * *
831278 ATGGGGAAATTTTTGAAGAGTAAAACAAATAGTATATACTTGTT
129 AAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCT-TT
* * * * *
831322 ATGCTTGATTATGTGAAACGAATTGTGTAAAGAAGAGGCGTTTGTAGTCTAACGGTTAGGATAAT
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* ** * * * ** *
831387 TGCCTTCCAAGCAATATACCCGACTTCAACTCTCGGTAAATACGTTTACGATAGTAAAAATTTAA
66 TGCCTTCCAAGCAATAGACCCGGGTTCGACTCTCGGCAAATGCAATTACGATAGTAAAAAATTAA
** * * *
831452 GTTGAAAATTTTGAAAAGTAAAATGAGTAGTGTATACGTCTT
131 GGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCT-TT
* * * *
831494 GTTCTTGATTATGTGAAACAAATAGTGTAAAGATGAGGCATTTGTAGTCTAATGGTTAGGATAAT
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * ** * * **
831559 TGCCTTCTAAGCAATAGACCTGGGTTCTACTC-CTGATAAAAGAAATTTTGATAGT-AAAAATTA
66 TGCCTTCCAAGCAATAGACCCGGGTTCGACTCTC-GGCAAATGCAATTACGATAGTAAAAAATTA
* * * *
831622 A-GGAAAAACTTTT-AAAAATAAACCAAATAGTGTATACCTTTT
130 AGGGGAAAA-TTTTGAAAAGTAAAACGAATAGTGTATACC-TTT
* * * * * * * * * *
831664 GTTATTGATTATGAGAAGCGAATAGTGTAAAGAGGAGGCGTTTGTTGTCTAACAGATACGATAAT
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * * *
831729 TGCCTTCCAAGCAATATACCTGGGTTCAACT-TGCTGCAAATGCAATTACAATAGTAAAATAATT
66 TGCCTTCCAAGCAATAGACCCGGGTTCGACTCT-CGGCAAATGCAATTACGATAGTAAAA-AATT
* * * * *
831793 AAGGGGTACATTTTAAAAAGTAAAACGAATAGTGTAAACATTT
129 AAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCTTT
* * * *
831836 -TTGCTTGATTATGTGAAATC-AATAGTGTAAAGAAGACGAGTTCGTAAT-CATACGGTTAGGAT
1 GTT-CTTGATTATGTGAAA-CAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCA-ACGGTTAGGAT
* * * * * * * * *
831898 AACTGCCTTCCAAGCAATAGACCTGGGTTTGACTATCGACAAACGCAATCACGATAATAAAAAAA
63 AATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCTCGGCAAATGCAATTACGATAGTAAAAAAT
* ** * *
831963 TAA-AGGAATTTTTTTGAAAAGTAAAACAAATAGTGTTTACCTTT
128 TAAGGGGAA-AATTTTGAAAAGTAAAACGAATAGTGTATACCTTT
* * ** * *
832007 CGTGCTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGTATTTGTAGTCCAATGGTTAGGCTAA
1 -GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAA
* * * * ** * * * * *
832072 TTACCTTACAAGCAACAGTCTTGGGTTTGACTC-CTGGTAAATG-ATTTACGATTGTAAAAACTT
65 TTGCCTTCCAAGCAATAGACCCGGGTTCGACTCTC-GGCAAATGCAATTACGATAGTAAAAAATT
* * * * * **
832135 AAGGGAAAAATTCTGAAAAGTAAAACGAGTAATTTATATGTGTT
129 AAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCT-TT
* * * * * * *
832179 GTTATTCATTACGTGAAACAAATAGTATTAATAAGAGGCCTTTGTAGTCCAACGGTTAGGATAAT
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
** * ** *
832244 TGCCTTGTAAGCAATAGACCCGGGTTCGACTCCCGGCAAACACAATCACGATAGTAAAATAATTA
66 TGCCTTCCAAGCAATAGACCCGGGTTCGACTCTCGGCAAATGCAATTACGATAGTAAAA-AATTA
* * * * *
832309 AGGGGAAAATATTGAAAAGTAAAATGAGTAGTGTATTCGTGTT
130 AGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCT-TT
* * * * *
832352 GTTCTTGATTATGTGAAATAAATAGTTTAAATAAGAGGCGTTTGTAGTCTAACGGTTAGGATAAA
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* **
832417 TGCCTTCCAAGCAATAGACCCAGGTTCGACTC-CTGGCAAACACAATTACGATAGTAAAAAATT-
66 TGCCTTCCAAGCAATAGACCCGGGTTCGACTCTC-GGCAAATGCAATTACGATAGTAAAAAATTA
* * * * ** *
832480 AGGGGGAGACTTTGAAAAGTAAAACGAGTAGTGTATAGGTGT
130 AGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCTTT
* * * * * * * *
832522 GCTTCTTTATTACGTGAAGCAAATA-TTTAAAAAATTAGGCATTTGTAGTCCATTC-GTTAGGAT
1 G-TTCTTGATTATGTGAAACAAATAGTGTAAAGAA-GAGGCGTTTGTAGTCCA-ACGGTTAGGAT
* * * * * * **
832585 AATTGCATTCCAAACAATAGACCCAGGTTTGACTCGCGGAAAATGCAATTTTGATAGTAAAAAAT
63 AATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCTCGGCAAATGCAATTACGATAGTAAAAAAT
* * * * * * *
832650 TAAGTGGTAAATTTTGATAAGTAAAACTAATAGTTTTTTTCCCTTTT
128 TAAGGGGAAAATTTTGAAAAGTAAAACGAATAG--TGTATACC-TTT
* * * * * ** *
832697 GTGCTTAATTATGTGAAA-ATAATACTGTAAAGAAGAGGTGTTTGTAGTCCTATTGTTAGAATAA
1 GTTCTTGATTATGTGAAACA-AATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAA
* * * * * * * * *
832761 TTGCCTTGCAAGCAATAGACTCGGGTTTGAGTCTCGGTAAATGAAATTATGATTGTAAAACAAAT
65 TTGCCTTCCAAGCAATAGACCCGGGTTCGACTCTCGGCAAATGCAATTACGATAGTAAAA-AATT
* * * *
832826 -A---G-------T--ATA-T-ATA--TATA-TATATACCTTT
129 AAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCTTT
* * * * * * * * * *
832851 -TATGCTTGATAATATAAAACAAATAATGT--A-AATAGGAGTTTTTAGTCCAATGGTTTGGATG
1 GT-T-CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATA
* * * * * * * * *
832912 TTTTCCTTGCAAGCAATAGACTCTGGTTTGACT-TACTGCAAATGTAATTACAATAGTAAAAAAT
64 ATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCT-CGGCAAATGCAATTACGATAGTAAAAAAT
* * * *
832976 TAAGGGGAAAATATAGAAAAGTAAAACGATTAG-CTATACCTTTT
128 TAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACC-TTT
* * *
833020 GTTCTTGATTATGTGAAACAAATATTGTAAAGAAGAGCCGTTTGTAGTCCAACTGTTAGGATAAT
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * * * * ** *
833085 TGCCTTCCAAGTAATAGGCTCGAGTTTGACT-TATGGCAAACACAATTACGATAGTAAAATATTA
66 TGCCTTCCAAGCAATAGACCCGGGTTCGACTCT-CGGCAAATGCAATTACGATAGTAAAAAATTA
** * *
833149 A-GGGAAAA---TGAAAAAGTAAAATAAAAAGTGCATACCTTT
130 AGGGGAAAATTTTG-AAAAGTAAAACGAATAGTGTATACCTTT
** ** ** * * *
833188 CGCGCTCAATTATGTGAAAGGAATAATGTAAAGAAGAGGCATTTGAAGTCCAACGGTTAGGATAA
1 -GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAA
** * * ** * *
833253 TAACCTTCCAAGGAATAAACCCGGGTTCGACTC-CTAACAAATGCAACTATGATAGTAAAAAATT
65 TTGCCTTCCAAGCAATAGACCCGGGTTCGACTCTC-GGCAAATGCAATTACGATAGTAAAAAATT
* * * * *
833317 ATGGGGAAAATTTTAAAAAGTAAAAAGAGTAGTGTATACATGTT
129 AAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCT-TT
* ** * *
833361 GTTCTTGATTATGTAAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTATGATAAA
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT-AA
* * * * **
833426 TT-CCTTCCAAGCAATAGAGATCCAGGTTCGACTCCCGACAAACACAATTACGATAGTAAAAAAT
65 TTGCCTTCCAAGCAAT--AGACCCGGGTTCGACTCTCGGCAAATGCAATTACGATAGTAAAAAAT
* * *
833490 TAAGGGGAAAATTTTGAAAAGTAAAATGAGTAGTGTATACGTGTT
128 TAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCT-TT
* * * *
833535 GTACTTGATTATGTGAAACAAATAGTTTAAAGAAGAGGCATTTGTAGTCCAACGGTTTGGATAAT
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * * * ** * * *
833600 TGCCTTTCATGCAATGGACTC-GGTTTGACTCTCGATAAATGTAATTACGATATTAAAAAAATAA
66 TGCCTTCCAAGCAATAGACCCGGGTTCGACTCTCGGCAAATGCAATTACGATAGTAAAAAATTAA
* * * *
833664 GGGAAAAATTTTGAAAAGTAAAACGAGTAATGTATACTTGTT
131 GGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCT-TT
* ** * * * * * *
833706 GTTCTTGATTATGTGAAAGAAATAGTGGGAATAAGAGGCATTTGTAGTCAAATGATTATGA-AAT
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* ** ** * * * *
833770 TGCCTTCCAAGCAATAGATCTAGGTTCGACTCTCGGCAAACACAATCACAATAATAAAATAATCA
66 TGCCTTCCAAGCAATAGACCCGGGTTCGACTCTCGGCAAATGCAATTACGATAGTAAAA-AATTA
* *
833835 AGGGGAAAATTTTAAAAAGTAAAACGAATAGTGTAAACCTTTT
130 AGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACC-TTT
* ** * * * * *
833878 GTCCTTGATTATGTGAAATGAATAATGTAAAGAAGATGTGTTTGTAGTCCAATGGTTAAGATAAT
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * ** * * * * * *
833943 TACCTTCTAAGCAATATAATCGGGTTTGACTC-CTTGCTAATGCGATTACAATAGTAACAAATTA
66 TGCCTTCCAAGCAATAGACCCGGGTTCGACTCTC-GGCAAATGCAATTACGATAGTAAAAAATTA
* * *
834007 AGGGGAAATTTTTGAAAAGTAAAACGAGTAGTGTATACATGTT
130 AGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCT-TT
* * * * * *
834050 GTTCTTGATTATGTGAAACGAATAGTTTAAAGAATAGGCGTTTGTAGTCTAACGATTAGGATGAT
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT-AA
* * * * * * ** * *
834115 TTG-TTTCTAAGCAATA-CCCCTAGGTTCTACTCCCGGCAAAAACAAATTTAGGACAGTAAAAAA
65 TTGCCTTCCAAGCAATAGACCC-GGGTTCGACTCTCGGCAAATGC-AA-TTACGATAGTAAAAAA
* * * * ** *
834178 TTAA-GGGAAATTTTTTGAAAAGTAAAACGAGTAGTTTGTATGTGAT
127 TTAAGGGGAAA-ATTTTGAAAAGTAAAACGAATAGTGTATACCT-TT
* * * * * *
834224 GTTCTTGATTATTTGAAATAAATAGTTTAAAGAAGAGCCCTTTGTAGTCCAACGGTTTGGATAAT
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* ** * * * * * * * *
834289 TGCCTTACTTGAAATGGATCAGGGCTCGACTCTCGGTAAATGTAATTACGATATTAAAAAATTAA
66 TGCCTTCCAAGCAATAGACCCGGGTTCGACTCTCGGCAAATGCAATTACGATAGTAAAAAATTAA
** *
834354 GGGGAATTTTTTTAAAAGTAAAACGAATAGTGTATACCTTTT
131 GGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACC-TTT
* ** * * * * * *
834396 GTGCTTGATTATGTGAAATGAATTGTGCAAAGAAGAGGTGTTAGTAGTCTAACGATTAGGATAAT
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * * * ** * *
834461 TACCTTCCAAGCAATAGACTCAGGTTTGACTCCCGAAAAATGTAATTACGATAGTAAAATATTAA
66 TGCCTTCCAAGCAATAGACCCGGGTTCGACTCTCGGCAAATGCAATTACGATAGTAAAAAATTAA
** * * ** *
834526 AAGGAAAATTTTGAAAAGTAAAAGGAGTAGT-TATAGGTGTC
131 GGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCT-TT
* **
834567 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGCTTGTAGTCCAACCATTAGGATAAT
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
** * * * * * *
834632 TGCACATTCCAAATAGTAGACCAGGGTTCGACT-TGCCGAAAATTCAATTTCGATAGTAAAAAAT
66 TGC-C-TTCCAAGCAATAGACCCGGGTTCGACTCT-CGGCAAATGCAATTACGATAGTAAAAAAT
* * * * *
834696 TATGTGGTAAATTTTGAAAAGTAAAGA-AAATAGTATTTATATACCTTTT
128 TAAGGGGAAAATTTTGAAAAGTAAA-ACGAATAG----TGTATACC-TTT
* * ** * * * *
834745 GTGCTTGATAAAATGAAACAAATAGTGTAAAG-AGTA---GTTTTTATTCCAATGGTTAGGATGA
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAG-AGGCGTTTGTAGTCCAACGGTTAGGATAA
* * ** * * *
834806 TTGCCTTCCAAGAAATAGACTCTAGTTCGACT-TGCTGCAAATGCAATTACAATAGTAAAATATT
65 TTGCCTTCCAAGCAATAGACCCGGGTTCGACTCT-CGGCAAATGCAATTACGATAGTAAAAAATT
* * * * * *
834870 AAGTGGAAAATTTGGAAAAGTAAGACGATTAGCGTATATCTTTT
129 AAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATA-CCTTT
* * * * *
834914 GTTCTTAATTATGTGAAACGAATACTATAAAGAAGAGGCGTTTGTAGTCCAACTGTTAGGATAAA
1 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT-AA
* * * * ** ** * *
834979 TT-CCTTCCAAGCAATAGGCCCGAGTTTGACT-TATGAAAAACACAATTACGATTGTAAAAAGTT
65 TTGCCTTCCAAGCAATAGACCCGGGTTCGACTCT-CGGCAAATGCAATTACGATAGTAAAAAATT
* * *
835042 CAGGGGAAAATTTTGAAAAGTAAAACAAATAGTATATACCTTT
129 AAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCTTT
* * * * * *
835085 CG-TGTTGATTATGTGAAACAAATAGTGT-AAGAAAGGGGTGTTTTTAGTTCAACGGTTAGGATG
1 -GTTCTTGATTATGTGAAACAAATAGTGTAAAG-AAGAGGCGTTTGTAGTCCAACGGTTAGGATA
* * * * *
835148 ATTGCCTTCCAAGCAATAAACCCGGGTTCGACTCACTGCAAATGCAATTACAATAGTAAAATATT
64 ATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCTCGGCAAATGCAATTACGATAGTAAAAAATT
* **
835213 AAGGGGAGAATTTTGAAATTTAAAACGAATA
129 AAGGGGAAAATTTTGAAAAGTAAAACGAATA
835244 ATGTTAAATA
Statistics
Matches: 4514, Mismatches: 1092, Indels: 365
0.76 0.18 0.06
Matches are distributed among these distances:
151 4 0.00
152 73 0.02
153 2 0.00
154 3 0.00
155 24 0.01
156 1 0.00
157 6 0.00
158 108 0.02
159 5 0.00
160 10 0.00
161 2 0.00
162 8 0.00
163 111 0.02
164 7 0.00
165 1 0.00
166 7 0.00
167 4 0.00
168 51 0.01
169 142 0.03
170 245 0.05
171 1045 0.23
172 1782 0.39
173 439 0.10
174 359 0.08
175 37 0.01
177 3 0.00
178 34 0.01
179 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (171 bp):
GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
TGCCTTCCAAGCAATAGACCCGGGTTCGACTCTCGGCAAATGCAATTACGATAGTAAAAAATTAA
GGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCTTT
Found at i:834375 original size:518 final size:512
Alignment explanation
Indices: 829288--835164 Score: 2065
Period size: 515 Copynumber: 11.5 Consensus size: 512
829278 ACGTGTAGTT
** * * * * *
829288 CTTGATTATGTGAAACAAATAGTATAAAGATA-AGGCGTTTGTAGTCCAACGGTTAGGATACTT-
1 CTTGATTATGTGAAATGAATAGTGTAAAGA-AGAGGTGTTTGTAGTCCAACGATTAAGATAATTA
* * * **
829351 GCTTCCAAGGAATAGAACCAGGTTTGACTCTCCG-CAAACACAATTACGATAGTAAAAAATTAA-
65 CCTTCCAAGCAATAGAATCAGGTTTGACTC-CCGACAAATGCAATTACGATAGT-AAAAATTAAG
* ** * * * ** * ** * **
829414 GGGAAAATTTTGAAAAGTAAATCGAAAAGTGTATACCT-TTCATGCTCAAGTAAATAAAAGGAAT
128 GGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT-GTTCTTGATTATGTGAAACAAAT
* * * * * * ** **
829478 AGTGTAAAGAAGAGGCGTTTATAGTCCAATGGTTAGGATAATTACCTTCCAAGCAATAGACCCGG
192 AGTTTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATT-GCTTTCAAGCAATCCA-CTAG
* * * * * * * * *
829543 GCTCGACTCCCAGCA-AATACAAGA--ATGATAGTAAAAAATTTAGGGGAAAATTTTGAAAAGAA
255 GTTTGACTCCC-G-ATAAAACAA-ATTACGACAGTAAAAAAATAAGGGAAAAATTTTGAAAAGTA
* * * * * * * *
829605 AAATGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACG-AATAGTGTAAAGAATAGGCGTT
317 AAACGAGTAATGTATACTTGATGTTCTTGATTATGTGAAA-GAAATAGTGGAAAGAAGAGCCATT
** * * * * * * ** * * *
829669 AATAGTCCAATGATTATGATAATTTCCTTCCAAGCAATAGACCCCGGTTTGACTCCCGGCAAACA
381 TGTAGTCAAACGATTATGA-AATTGCCTTACAAGAAATAGATCTAGGCTCGACTCTCGGCAAACA
* * * * * ** *
829734 CAATTACTATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATAGGTGTT
445 CAATCACGATAATAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATAGTGTATACCTTTT
*
829799 GTT
510 GTC
* * * * * * ** *
829802 CTTGATTATGTGAAA-CAATTAGTTTAAAGAAGAGGCGCTAGTAGTCCAACAATTTGGATAATTG
1 CTTGATTATGTGAAATGAA-TAGTGTAAAGAAGAGGTGTTTGTAGTCCAACGATTAAGATAATTA
* * * * * ** * * * ** * *
829866 CATTCGATGTAATGGACCCGGGTTCGACTCTCGGTAAATGTAATTACGATATTAAAAAATTAAGG
65 CCTTCCAAGCAATAGAATCAGGTTTGACTCCCGACAAATGCAATTACGATAGT-AAAAATTAAGG
** * * * ** * * * *
829931 GGAATTTTTTGAAAAGTAAAATGAATAGTGTAAATATTTTGTGCTTGATTATGTGAAACGAATAA
129 GGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAG
* * ** * * * * * * ** **
829996 TGTAAAAAAGACACTTTTGTAGTCCAATGGTTAGGAGAATTACCTTCCAAGCAATAGACCCGGGT
194 TTTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATT-GCTTTCAAGCAATCCA-CTAGGT
* * *** * * * **
830061 TTGACTCCTGGCT-AATGTAATTACGATAGTAAAAAATTAAGGCG-GATTTTTTGAAAAGTAAAA
257 TTGACTCC-CGATAAAACAAATTACGACAGTAAAAAAATAAGG-GAAAAATTTTGAAAAGTAAAA
** * * * * * * * * *
830124 CGAGTGGTGTATACATGTTGTTCTTTATTATGTGAAACG-AATAGTGTACACAATAGGCGTTTGT
320 CGAGTAATGTATACTTGATGTTCTTGATTATGTGAAA-GAAATAGTGGAAAGAAGAGCCATTTGT
* * * * * * * * * * * * *
830188 AGTCTAACGATTAGGATAATT-TCTTTCAAAGCAATA-AGCCAGAGTTCTACTCCCGACAAAAAA
384 AGTCAAACGATTATGA-AATTGCCTTAC-AAGAAATAGATCTAG-GCTCGACTCTCGGCAAACAC
* * * * * * * * * * * *
830251 AATTAGGATAGTAAAGAATTAA-GGGAAAATTTTGAAAAGCAAAAAGAGTAATGTGTACGTGTTG
446 AATCACGATAATAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATAGTGTATACCTTTTG
*
830315 TT
511 TC
* * * * ** * * * * *
830317 CTTGATTATTTGAAATAAATAGTTTAAAGAAAAGGCCTTTGTAGTCTAGCGGTTTAGATAATTCC
1 CTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAACGATTAAGATAATTAC
* * * * * ** * * * *
830382 CTTCTATGTAATAG-ATCAGGGTTCGACTCTCGGTAAATGTAATTACTATATTAAAAAATTAAGT
66 CTTCCAAGCAATAGAATCA-GGTTTGACTCCCGACAAATGCAATTACGATAGT-AAAAATTAAGG
* * *
830446 GGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCT-TTCGTGCTTGATTAT-T--------T-
129 GGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT-GTTCTTGATTATGTGAAACAAATA
* * * * * **
830500 G--AAAAGAAG-GTC-TTTGTAGTCTAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCT-GA
193 GTTTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTG-CTTTCAAGCAATCCA-CTAG-
* * * * ** ** * * * *
830560 CTTCGACTCCCGACAAATGC-GTTTACGATTGTAAAAAACTAAGGGACAAATTTAGGAAAGTAAA
255 GTTTGACTCCCGATAAA-ACAAATTACGACAGTAAAAAAATAAGGGAAAAATTTTGAAAAGTAAA
* * * * * * * ** ***
830624 ACAAATAGTGTATAGATT-TTGTTCTTGATTATGTAAAATAAATAGTTTAAAGAAGAGGTGTTTG
319 ACGAGTAATGTATA-CTTGATGTTCTTGATTATGTGAAAGAAATAGTGGAAAGAAGAGCCATTTG
* * * * * ** * * *
830688 TAGTCTAACTG-TTAAGATAATTGCCTT-CAAAGCAATATACCCGGGTTCGACTCGCGG-ATAAT
383 TAGTCAAAC-GATTATGA-AATTGCCTTAC-AAGAAATAGATCTAGGCTCGACTCTCGGCA-AAC
** *** * * * * * *
830750 GTAATTTTGATAGT-AAAAATTAAGTGAAAAATTTTGAAAAGTAAAACGAATAGTTTTTACCTTT
444 ACAATCACGATAATAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATAGTGTATACCTTT
*
830814 TGTA
509 TGTC
* ** ** *
830818 CTTGATTATGTGAAACT-AATATTGTAAAGAA-ATGGCATTAT-TAGTCCCATTG-TTAGGATAA
1 CTTGATTATGTGAAA-TGAATAGTGTAAAGAAGA-GGTGTT-TGTAGT-CCAACGATTAAGATAA
* ** * * * * * *
830879 TTGCCTTCCAATTAATA-AACCCGGGTTTAAGTCCCCG-CAAATGAAATTACGATTGTAAAACAT
62 TTACCTTCCAAGCAATAGAA-TCAGGTTTGACT-CCCGACAAATGCAATTACGATAGTAAAA-AT
* * * * * *
830942 TAAGGGG-AAATTTTTAAAA--AAATA--A--A---TATACCTTTTCTGCTTGATTATATGAAAC
124 TAAGGGGAAAATTTTGAAAAGTAAA-ACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAAC
* * * * * * **
830997 AAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAATGGTTAGGATGATTGCCTTCCAACCAATAGAC
188 AAATAGTTTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTG-CTTTCAAGCAATCCAC
* ** * * * * * * * *
831062 TCGGGTTCAACTTGCTG-TAAATAC-AATTACAATAGCAAAAAATTAATGG-AAAATTTGGAAAA
252 T-AGGTTTGAC-TCCCGATAAA-ACAAATTACGACAGTAAAAAAATAAGGGAAAAATTTTGAAAA
* ** ** * * * * **
831124 GTAAAACGATTAGCGTATACCTTTTTGTGCTTGATTATGTGAAACAAATACTGTAAAGAAGAGGT
314 GTAAAACGAGTAATGTATA-CTTGATGTTCTTGATTATGTGAAAGAAATAGTGGAAAGAAGAGCC
* * * * ** * ** * * *
831189 GTTTGTAGTCCAACTG-TTAGGATAAATT-CCTTCCAATCAATAG-GCCCGAGTTTGAC-CTTTG
378 ATTTGTAGTCAAAC-GATTATG--AAATTGCCTTACAAGAAATAGATCTAG-GCTCGACTC-TCG
* ** * ** * * * * * * * *
831250 GAAAATGCAATTACGATTGTTAAAAGTTATGGGGAAATTTTTGAAGAGTAAAACAAATAGTATAT
438 GCAAACACAATCACGATAATAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATAGTGTAT
* *
831315 A-CTTGTTATG
503 ACCTT-TTGTC
* * * * * * *
831325 CTTGATTATGTGAAACGAATTGTGTAAAGAAGAGGCGTTTGTAGTCTAACGGTTAGGATAATTGC
1 CTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAACGATTAAGATAATTAC
* * * * ** * ** * ** *
831390 CTTCCAAGCAATA-TACCCGACTTCAACTCTCGGTAAATACGTTTACGATAGTAAAAATTTAAGT
66 CTTCCAAGCAATAGAATCAG-GTTTGACTCCCGACAAATGCAATTACGATAGTAAAAA-TTAAGG
* * *
831454 TGAAAATTTTGAAAAGTAAAATGAGTAGTGTATACGTCTTGTTCTTGATTATGTGAAACAAATAG
129 GGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAG
* * * * * * * ** *
831519 TGTAAAGATGAGGCATTTGTAGTCTAATGGTTAGGATAATTGCCTTCTAAGCAATAGACCTGGGT
194 TTTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCTTTC-AAGCAATCCA-CTAGGT
* * ** * * * *
831584 TCT-ACTCCTGATAAAAGAAATTTTGATAGT-AAAAATTAA-GGAAAAACTTTT-AAAAATAAAC
257 T-TGACTCCCGATAAAACAAATTACGACAGTAAAAAAATAAGGGAAAAA-TTTTGAAAAGTAAAA
* * * * * * * * * * *
831645 CAAATAGTGTATACCTT-TTGTTATTGATTATGAG-AAGCGAATAGTGTAAAGAGGAGGCGTTTG
320 CGAGTAATGTATA-CTTGATGTTCTTGATTATGTGAAAG-AAATAGTGGAAAGAAGAGCCATTTG
* * * * * * * * * * * **
831708 TTGTCTAACAGA-TACGATAATTGCCTTCCAAGCAATATACCTGGGTTCAACT-TGCTGCAAATG
383 TAGTCAAAC-GATTATGA-AATTGCCTTACAAGAAATAGATCTAGGCTCGACTCT-CGGCAAACA
* * * * * * *
831771 CAATTACAATAGTAAAATAATTAAGGGGTACATTTTAAAAAGTAAAACGAATAGTGTAAACATTT
445 CAATCACGATAATAAAA-AATTAAGGGGAAAATTTTAAAAAGTAAAACGAATAGTGTATACCTTT
*
831836 T-TG
509 TGTC
* * * * * * * * *
831839 CTTGATTATGTGAAATCAATAGTGTAAAGAAGACGAGTTCGTAAT-CATACGGTTAGGATAACTG
1 CTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGTGTTTGTAGTCCA-ACGATTAAGATAATTA
* * ** * * * *
831903 CCTTCCAAGCAATAG-ACCTGGGTTTGACTATCGACAAACGCAATCACGATAATAAAAAAATAA-
65 CCTTCCAAGCAATAGAATC-AGGTTTGACTCCCGACAAATGCAATTACGATAGT-AAAAATTAAG
* ** * * * * * *
831966 AGGAATTTTTTTGAAAAGTAAAACAAATAGTGTTTACCT-TTCGTGCTTGATTATGTGAAACGAA
128 GGGAA-AATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT-GTTCTTGATTATGTGAAACAAA
* ** * * * * *
832030 TAGTGTAAAGAAGAGGTATTTGTAGTCCAATGGTTAGGCTAATTACCTTACAAGCAA--CAGTCT
191 TAGTTTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATT-GCTTTCAAGCAATCCA--C-
* * * ** * ** ** *
832093 TGGGTTTGACTCCTGGT-AAATGATTTACGATTGTAAAAACTTAAGGGAAAAATTCTGAAAAGTA
252 TAGGTTTGACTCCCGATAAAACAAATTACGACAGTAAAAAAATAAGGGAAAAATTTTGAAAAGTA
* * * * * * *** *
832157 AAACGAGTAATTTATA-TGTGTTGTTATTCATTACGTGAAACAAATAGTATTAATAAGAGGCC-T
317 AAACGAGTAATGTATACT-TGATGTTCTTGATTATGTGAAAGAAATAGTGGAAAGAAGA-GCCAT
* * * ** * * ** * *
832220 TTGTAGTCCAACGGTTAGGATAATTGCCTTGTAAGCAATAGACCCGGGTTCGACTCCCGGCAAAC
380 TTGTAGTCAAACGATTATGA-AATTGCCTTACAAGAAATAGATCTAGGCTCGACTCTCGGCAAAC
* * * * * * * *
832285 ACAATCACGATAGTAAAATAATTAAGGGGAAAATATTGAAAAGTAAAATGAGTAGTGTATTCGTG
444 ACAATCACGATAATAAAA-AATTAAGGGGAAAATTTTAAAAAGTAAAACGAATAGTGTATACCTT
*
832350 TTGTT
508 TTGTC
* * * * * * * * *
832355 CTTGATTATGTGAAATAAATAGTTTAAATAAGAGGCGTTTGTAGTCTAACGGTTAGGATAAATGC
1 CTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAACGATTAAGATAATTAC
** * * * **
832420 CTTCCAAGCAATAGACCCAGGTTCGACTCCTGGCAAACACAATTACGATAGTAAAAAATT-AGGG
66 CTTCCAAGCAATAGAATCAGGTTTGACTCCCGACAAATGCAATTACGATAGT-AAAAATTAAGGG
* * * * * * *
832484 GGAGACTTTGAAAAGTAAAACGAGTAGTGTATAGGTG-TGCTTCTTTATTACGTGAAGCAAATA-
130 GAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG-TTCTTGATTATGTGAAACAAATAG
* * * * * * ** *
832547 TTTAAAAAATTAGGCATTTGTAGTCCATTCG-TTAGGATAATTGCATTCCAAACAATAGACCCAG
194 TTTAAAGAA-GAGGCGTTTGTAGTCCA-ACGATTAGGATAATTGC-TTTCAAGCAATCCA-CTAG
* * ** * * * *
832611 GTTTGACTCGCGGA-AAATGC-AATTTTGATAGTAAAAAATTAAGTGG-TAAATTTTGATAAGTA
255 GTTTGACTC-CCGATAAA-ACAAATTACGACAGTAAAAAAATAAG-GGAAAAATTTTGAAAAGTA
* * * * * * * * * * * **
832673 AAACTAATAGTTTTTTTCCCTT-TTGTGCTTAATTATGTGAAA-ATAATACTGTAAAGAAGAGGT
317 AAACGAGTA--ATGTAT-ACTTGATGTTCTTGATTATGTGAAAGA-AATAGTGGAAAGAAGAGCC
* * ** * * * * * *
832736 GTTTGTAGTCCTATTG-TTA-GAATAATTGCCTTGCAAGCAATAGA-CTCGGGTTTGAGTCTCGG
378 ATTTGTAGT-CAAACGATTATG-A-AATTGCCTTACAAGAAATAGATCT-AGGCTCGACTCTCGG
* * ** * * * * * *
832798 ----TA-AAT---GA-AAT-TATGATT----GTAAAA---CAAATAGTATATA-TATATA-TATA
439 CAAACACAATCACGATAATAAAAAATTAAGGGGAAAATTTTAAAAAGTA-AAACGA-ATAGTGTA
* *
832844 TACCTTTTATG
502 TACCTTTTGTC
* * * ** * * * * * ** ** *
832855 CTTGATAATATAAAACAAATAATGTAAATAGGA-GT-TTT-TAGTCCAATGGTTTGGATGTTTTC
1 CTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAACGATTAAGATAATTAC
* * * * * * *
832917 CTTGCAAGCAATAGACTCTGGTTTGACTTACTG-CAAATGTAATTACAATAGTAAAAAATTAAGG
66 CTTCCAAGCAATAGAATCAGGTTTGAC-TCCCGACAAATGCAATTACGATAGT-AAAAATTAAGG
* * * * * *
832981 GGAAAATATAGAAAAGTAAAACGATTAG-CTATACCTTTTGTTCTTGATTATGTGAAACAAATA-
129 GGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAG
* * * *** *
833044 TTGTAAAGAAGAGCCGTTTGTAGTCCAACTG-TTAGGATAATTGCCTTCCAAGTAATAGGCTCGA
194 TT-TAAAGAAGAGGCGTTTGTAGTCCAAC-GATTAGGATAATTG-CTTTCAAGCAATCCACTAG-
*** ** * * *
833108 GTTTGACTTATG-GCAAACACAATTACGATAGTAAAATATTAAGGG-AAAA---TGAAAAAGTAA
255 GTTTGACTCCCGATAAAACA-AATTACGACAGTAAAAAAATAAGGGAAAAATTTTG-AAAAGTAA
* ** * ** ** * * * *
833168 AA-TAAAAAGTGCATACCTT--TCGCGCTCAATTATGTGAAAGGAATAATGTAAAGAAGAGGCAT
318 AACGAGTAA-TGTATA-CTTGAT-GTTCTTGATTATGTGAAAGAAATAGTGGAAAGAAGAGCCAT
* * * * ** * * * * ** * **
833230 TTGAAGTCCAACGGTTAGGATAATAACCTTCCAAGGAATAAACCCGGGTTCGACTC-CTAACAAA
380 TTGTAGTCAAACGATTATGA-AATTGCCTTACAAGAAATAGATCTAGGCTCGACTCTC-GGCAAA
** * * * * * *
833294 TGCAA-CTATGATAGTAAAAAATTATGGGGAAAATTTTAAAAAGTAAAAAGAGTAGTGTATACAT
443 CACAATC-ACGATAATAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATAGTGTATACCT
* *
833358 GTTGTT
507 TTTGTC
* * *
833364 CTTGATTATGTAAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTATGATAAATT-
1 CTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAACGATTAAGAT-AATTA
* **
833428 CCTTCCAAGCAATAGAGATCCAGGTTCGACTCCCGACAAACACAATTACGATAGTAAAAAATTAA
65 CCTTCCAAGCAATAGA-AT-CAGGTTTGACTCCCGACAAATGCAATTACGATAGT-AAAAATTAA
* *
833493 GGGGAAAATTTTGAAAAGTAAAATGAGTAGTGTATACGTGTTGTACTTGATTATGTGAAACAAAT
127 GGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAAT
* * * * ** *
833558 AGTTTAAAGAAGAGGCATTTGTAGTCCAACGGTTTGGATAATTGCCTTTCATGCAATGGACTCGG
192 AGTTTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTG-CTTTCAAGCAATCCACTAGG
* *** * *
833623 TTTGACTCTCGATAAATGTAATTACGATATTAAAAAAATAAGGGAAAAATTTTGAAAAGTAAAAC
256 TTTGACTCCCGATAAAACAAATTACGACAGTAAAAAAATAAGGGAAAAATTTTGAAAAGTAAAAC
* * * *
833688 GAGTAATGTATACTTGTTGTTCTTGATTATGTGAAAGAAATAGTGGGAATAAGAGGCATTTGTAG
321 GAGTAATGTATACTTGATGTTCTTGATTATGTGAAAGAAATAGTGGAAAGAAGAGCCATTTGTAG
* * * *
833753 TCAAATGATTATGAAATTGCCTTCCAAGCAATAGATCTAGGTTCGACTCTCGGCAAACACAATCA
386 TCAAACGATTATGAAATTGCCTTACAAGAAATAGATCTAGGCTCGACTCTCGGCAAACACAATCA
* * *
833818 CAATAATAAAATAATCAAGGGGAAAATTTTAAAAAGTAAAACGAATAGTGTAAACCTTTTGTC
451 CGATAATAAAA-AATTAAGGGGAAAATTTTAAAAAGTAAAACGAATAGTGTATACCTTTTGTC
* * * *
833881 CTTGATTATGTGAAATGAATAATGTAAAGAAGATGTGTTTGTAGTCCAATGGTTAAGATAATTAC
1 CTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAACGATTAAGATAATTAC
* * * * * * *
833946 CTTCTAAGCAATATAATCGGGTTTGACTCCTTG-CTAATGCGATTACAATAGTAACAAATTAAGG
66 CTTCCAAGCAATAGAATCAGGTTTGACTCC-CGACAAATGCAATTACGATAGTAA-AAATTAAGG
* * *
834010 GGAAATTTTTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACGAATAG
129 GGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAG
* * * *
834075 TTTAAAGAATAGGCGTTTGTAGTCTAACGATTAGGATGATTTG-TTTCTAAGCAATACCCCTAGG
194 TTTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGAT-AATTGCTTTC-AAGCAAT-CCACTAGG
* * **
834139 TTCT-ACTCCCGGCA-AAAACAAATTTAGGACAGTAAAAAATTAAGGGAAATTTTTTGAAAAGTA
256 TT-TGACTCCC-G-ATAAAACAAA-TTACGACAGTAAAAAAATAAGGGAAAAATTTTGAAAAGTA
* * * * * ** *
834202 AAACGAGTAGTTTGTA-TGTGATGTTCTTGATTATTTGAAATAAATAGTTTAAAGAAGAGCCCTT
317 AAACGAGTAATGTATACT-TGATGTTCTTGATTATGTGAAAGAAATAGTGGAAAGAAGAGCCATT
* * ** * *
834266 TGTAGTCCAACGGTT-TGGATAATTGCCTTACTTGAAATGGATC-AGGGCTCGACTCTCGGTAAA
381 TGTAGTCAAACGATTAT-GA-AATTGCCTTACAAGAAATAGATCTA-GGCTCGACTCTCGGCAAA
*** * * ** *
834329 TGTAATTACGATATTAAAAAATTAAGGGGAATTTTTTTAAAAGTAAAACGAATAGTGTATACCTT
443 CACAATCACGATAATAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATAGTGTATACCTT
*
834394 TTGTG
508 TTGTC
* * * * *
834399 CTTGATTATGTGAAATGAATTGTGCAAAGAAGAGGTGTTAGTAGTCTAACGATTAGGATAATTAC
1 CTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAACGATTAAGATAATTAC
* * * **
834464 CTTCCAAGCAATAGACTCAGGTTTGACTCCCGAAAAATGTAATTACGATAGTAAAATATTAAAAG
66 CTTCCAAGCAATAGAATCAGGTTTGACTCCCGACAAATGCAATTACGATAGTAAAA-ATTAAGGG
* * *
834529 GAAAATTTTGAAAAGTAAAAGGAGTAGT-TATAGGTGTCGTTCTTGATTATGTGAAACAAATAGT
130 GAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGT
* * * * ** * ** *
834593 GTAAAGAAGAGGCGCTTGTAGTCCAACCATTAGGATAATTGCACATTCCAAATAGTAGACCAGGG
195 TTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTG--C-TTTCAAGCAATCCACTA-GG
* * * * * * * *
834658 TTCGACTTGCCGA-AAATTC-AATTTCGATAGTAAAAAATTATGTGG-TAAATTTTGAAAAGTAA
256 TTTGAC-TCCCGATAAA-ACAAATTACGACAGTAAAAAAATAAG-GGAAAAATTTTGAAAAGT--
** * * * * * ** * *
834720 AGAAAATAGTATTTATATACCTT-TTGTGCTTGATAAAATGAAACAAATAGTGTAAAG-AGTAG-
316 A-AAACGAGTA-ATGTATA-CTTGATGTTCTTGATTATGTGAAAGAAATAGTGGAAAGAAG-AGC
* * * * * * * * * *
834782 --TTTTTATTCCAATGGTTAGGATGATTGCCTTCCAAGAAATAGACTCTA-GTTCGACT-TGCTG
377 CATTTGTAGTCAAACGATTATGA-AATTGCCTTACAAGAAATAGA-TCTAGGCTCGACTCT-CGG
** * * * * * ** * * *
834843 CAAATGCAATTACAATAGTAAAATATTAAGTGGAAAATTTGGAAAAGTAAGACGATTAGCGTATA
439 CAAACACAATCACGATAATAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATAGTGTATA
* *
834908 TCTTTTGTT
504 CCTTTTGTC
* * * * * *
834917 CTTAATTATGTGAAACGAATACTATAAAGAAGAGGCGTTTGTAGTCCAACTG-TTAGGATAAATT
1 CTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAAC-GATTAAGAT-AATT
** * *** * ** * *
834981 -CCTTCCAAGCAATAG-GCCCGAGTTTGACTTATGAAAAACACAATTACGATTGTAAAAAGTTCA
64 ACCTTCCAAGCAATAGAATCAG-GTTTGACTCCCGACAAATGCAATTACGATAGTAAAAA-TTAA
* * * * *
835044 GGGGAAAATTTTGAAAAGTAAAACAAATAGTATATACCT-TTCG-TGTTGATTATGTGAAACAAA
127 GGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT-GTTCTTGATTATGTGAAACAAA
* * * * * * * *
835107 TAGTGT-AAGAAAGGGGTGTTTTTAGTTCAACGGTTAGGATGATTGCCTTCCAAGCAAT
191 TAGTTTAAAG-AAGAGGCGTTTGTAGTCCAACGATTAGGATAATTG-CTTTCAAGCAAT
835165 AAACCCGGGT
Statistics
Matches: 4181, Mismatches: 937, Indels: 488
0.75 0.17 0.09
Matches are distributed among these distances:
491 5 0.00
492 93 0.02
493 11 0.00
494 9 0.00
495 2 0.00
496 12 0.00
497 159 0.04
498 44 0.01
499 2 0.00
500 72 0.02
501 306 0.07
502 24 0.01
503 11 0.00
504 7 0.00
505 36 0.01
506 174 0.04
507 141 0.03
508 18 0.00
509 47 0.01
510 6 0.00
511 4 0.00
512 31 0.01
513 40 0.01
514 464 0.11
515 791 0.19
516 600 0.14
517 300 0.07
518 643 0.15
519 77 0.02
520 17 0.00
521 33 0.01
522 1 0.00
523 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (512 bp):
CTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAACGATTAAGATAATTAC
CTTCCAAGCAATAGAATCAGGTTTGACTCCCGACAAATGCAATTACGATAGTAAAAATTAAGGGG
AAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTT
TAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCTTTCAAGCAATCCACTAGGTTTGA
CTCCCGATAAAACAAATTACGACAGTAAAAAAATAAGGGAAAAATTTTGAAAAGTAAAACGAGTA
ATGTATACTTGATGTTCTTGATTATGTGAAAGAAATAGTGGAAAGAAGAGCCATTTGTAGTCAAA
CGATTATGAAATTGCCTTACAAGAAATAGATCTAGGCTCGACTCTCGGCAAACACAATCACGATA
ATAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATAGTGTATACCTTTTGTC
Found at i:834576 original size:689 final size:687
Alignment explanation
Indices: 829285--835243 Score: 2573
Period size: 689 Copynumber: 8.7 Consensus size: 687
829275 AGAACGTGTA
* * * *
829285 GTTCTTGATTATGTGAAACAAATAGTATAAAGATA-AGGCGTTTGTAGTCCAACGGTTAGGAT-A
1 GTTCTTGATTATGTAAAACGAATAGTGTAAAGA-AGAGGCGTTTGTAGTCCAACGATTAGGATAA
* * * * * * *
829348 CTTGCTTCCAAGGAAT-AGAACCAGGTTTGACTCTCCG-CAAACACAATTACGATAGTAAAAAAT
65 ATTCCTTCCAAGCAATAAGACCCAGGTTCGACTC-CCGACAAAAACAATTACGACAGTAAAAAAT
* ** * * ** * ** *
829411 TAA-GGGAAAATTTTGAAAAGTAAATCGAAAAGTGTATACCTTTCATG--CTCAAGTAAATAAAA
129 TAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATA-C-GTGATGTACTTGATTATGTGAAA
** * * * * * * * * * * *
829473 GGAATAGTGTAAAGAAGAGGCGTTTATAGTCCAATGGTTAGGATAATTACCTTCCAAGCAATAGA
192 CAAATAGTTTAAAGAAGAGCCATTTGTAGTCCAACGGTTTGGATAATTGCCTTACATGAAATGGA
* * * ** ** * * *
829538 CCCGGGCTCGACTC-CCAGCAAATACAAGAATGATAGTAAAAAATTTAGGGGAAAATTTTGAAAA
257 CTC-GGCTCGACTCTCGA-TAAATGTAATTACGATATTAAAAAATTAAGGGGAAAATTTTGAAAA
* * * * * * * *
829602 GAAAAATGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACGAATAGTGTAAAGAATAGGCG
320 GTAAAACGAATAGTGTATACCTTTTGTTCTTGATTATGTGAAA-GAATTGTGCAAAGAAGAGGCG
** * * * * * * *
829667 TTAATAGTCCAATGATTATGATAATTTCCTTCCAAGCAATAGACCCCGGTTTGACTCCCGGCAAA
384 TTTGTAGTCAAACGATTAGGATAATTGCCTTCCAAGCAATAGACTCAGGTTTGACTCACGGCAAA
* * * * **
829732 CACAATTACTATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATAGGTG
449 CACAATTACGATAGTAAAATATTAAAGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCT-
* * * * * ** **
829797 TT-GTTCTTGATTATGTGAAAC-AATTAGTTTAAAGAAGAGGCGCTAGTAGTCCAACAATTTGGA
513 TTCGTCCTTGATTATGTGAAACGAA-TAATGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAAGA
** * * * * ** *** * * * *
829860 TAATTGCATTCGATGTAATGGACCCGGGTTCGACT-CTCGGTAAATGTAATTACGATATTAAAAA
577 TAATAACCTTCCAAGCAATAAACCCGGGTTCGACTCCT-AACAAATGCAACTACAATAGTAAAAA
** * * * * * *
829924 ATTAAGGGGAATTTTTTGAAAAGTAAAATGAATAGTGTAAATATTTT
641 ATTAAGGGGAAAATTTTAAAAAGTAAAAAGAGTAGTGTATACATGTT
* * * * ** * * * *
829971 GTGCTTGATTATGTGAAACGAATAATGTAAAAAAGACACTTTTGTAGTCCAATGGTTAGGA-GAA
1 GTTCTTGATTATGTAAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAAA
* * * * * *** *
830035 TTACCTTCCAAGCAAT-AGACCCGGGTTTGACTCCTGGCTAATGTAATTACGATAGTAAAAAATT
66 TT-CCTTCCAAGCAATAAGACCCAGGTTCGACTCCCGACAAAAACAATTACGACAGTAAAAAATT
** * * * * * *
830099 AAGGCGG-ATTTTTTGAAAAGTAAAACGAGTGGTGTATACATGTTGTTCTTTATTATGTGAAACG
130 AAGG-GGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGATGTACTTGATTATGTGAAACA
* * * * * * * * * * * * * *
830163 AATAGTGTACACAATAGGCGTTTGTAGTCTAACGATTAGGATAATT-TCTTTCAAAGCAAT-AAG
194 AATAGTTTAAAGAAGAGCCATTTGTAGTCCAACGGTTTGGATAATTGCCTTAC-ATGAAATGGA-
* * * * *** * * *
830226 C-CAGAGTTCTACTCCCGACAAAAAAAATTAGGATAGTAAAGAATTAA-GGGAAAATTTTGAAAA
257 CTC-G-GCTCGACTCTCGATAAATGTAATTACGATATTAAAAAATTAAGGGGAAAATTTTGAAAA
* * * * * * * * * * ** * *
830289 GCAAAAAGAGTAATGTGTACGTGTTGTTCTTGATTATTTGAAATAAATAGTTTAAAGAAAAGGCC
320 GTAAAACGAATAGTGTATACCTTTTGTTCTTGATTATGTGAAA-GAATTGTGCAAAGAAGAGGCG
* * * * * * * * * *
830354 TTTGTAGTCTAGCGGTTTA-GATAATTCCCTTCTATGTAATAGA-TCAGGGTTCGACTCTCGGTA
384 TTTGTAGTCAAAC-GATTAGGATAATTGCCTTCCAAGCAATAGACTCA-GGTTTGACTCACGGCA
*** * * *
830417 AATGTAATTACTATATTAAAAAATT-AAGTGGAAAATTTTGAAAAGTAAAACGAATAGTGTATAC
447 AACACAATTACGATAGTAAAATATTAAAG-GGAAAATTTTGAAAAGTAAAACGAATAGTGTATAC
* * * * *
830481 CTTTCGTGCTTGATTA--T--------T--TGAAAAGAAG-GTC-TTTGTAGTCTAACGGTTAGG
511 CTTTCGTCCTTGATTATGTGAAACGAATAATGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAAG
** * * ** ** *** * *
830532 ATAATTGCCTTCCAAGCAATAGACCTGACTTCGACTCCCGACAAATGCGTTTACGATTGTAAAAA
576 ATAATAACCTTCCAAGCAATAAACCCGGGTTCGACTCCTAACAAATGCAACTACAATAGTAAAAA
* * * * *
830597 ACTAA-GGGACAAA-TTTAGGAAAGTAAAACA-AATAGTGTATAGATTTT
641 ATTAAGGGGA-AAATTTTA-AAAAGTAAAA-AGAGTAGTGTATACATGTT
** * * * *
830644 GTTCTTGATTATGTAAAATAAATAGTTTAAAGAAGAGGTGTTTGTAGTCTAACTG-TTAAGAT-A
1 GTTCTTGATTATGTAAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAAC-GATTAGGATAA
* * * * * *** ** *
830707 ATTGCCTTCAAAGCAAT-ATACCCGGGTTCGACTCGCGGA-TAATGTAATTTTGATAGT-AAAAA
65 ATT-CCTTCCAAGCAATAAGACCCAGGTTCGACTC-CCGACAAAAACAATTACGACAGTAAAAAA
* * * * * * **
830769 TTAAGTGAAAAATTTTGAAAAGTAAAACGAATAGTTTTTACCTTTTGTACTTGATTATGTGAAAC
128 TTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGATGTACTTGATTATGTGAAAC
* * * ** * * *
830834 TAATA-TTGTAAAGAA-ATGGCATTAT-TAGTCCCATTGTTAGGATAATTGCCTTCCAAT-TAAT
193 AAATAGTT-TAAAGAAGA-GCCATT-TGTAGTCCAACGGTTTGGATAATTGCCTTAC-ATGAAAT
** * * ** * * * * *
830895 AAACCCGGGTTTAAGTCCCCG-CAAATGAAATTACGAT-TGTAAAACATTAAGGGG-AAATTTT-
254 GGACTC-GGCTCGACT-CTCGATAAATGTAATTACGATAT-TAAAAAATTAAGGGGAAAATTTTG
* * * * * * * *
830956 TAAA--AAAA-TAA-A---TATACCTTTTCTGCTTGATTATATGAAACAAATAGTGTAAAGAAGA
316 AAAAGTAAAACGAATAGTGTATACCTTTTGTTCTTGATTATGTGAAA-GAATTGTGCAAAGAAGA
* * * * * * ** ** *
831014 GGCGTTTGTAGTCCAATGGTTAGGATGATTGCCTTCCAACCAATAGACTCGGGTTCAACTTGCTG
380 GGCGTTTGTAGTCAAACGATTAGGATAATTGCCTTCCAAGCAATAGACTCAGGTTTGACTCACGG
* * * * * * * * *
831079 TAAATACAATTACAATAGCAAAAAATT-AATGGAAAATTTGGAAAAGTAAAACGATTAGCGTATA
445 CAAACACAATTACGATAGTAAAATATTAAAGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATA
* * * * * *
831143 CCTTTTTGTGCTTGATTATGTGAAACAAATACTGTAAAGAAGAGGTGTTTGTAGTCCAACTGTTA
510 CC-TTTCGTCCTTGATTATGTGAAACGAATAATGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTA
* * * ** * * * * * * *
831208 GGATAA-ATTCCTTCCAATCAATAGGCCCGAGTTTGAC-CTTTGGA-AAATGCAATTACGATTGT
574 AGATAATA-ACCTTCCAAGCAATAAACCCGGGTTCGACTC-CT-AACAAATGCAACTACAATAGT
* * * * * * * * *
831270 TAAAAGTTATGGGGAAATTTTTGAAGAGTAAAACA-AATAGTATATACTTGTT
636 AAAAAATTAAGGGGAAAATTTTAAAAAGTAAAA-AGAGTAGTGTATACATGTT
* * * * * *
831322 ATGCTTGATTATGTGAAACGAATTGTGTAAAGAAGAGGCGTTTGTAGTCTAACGGTTAGGAT-AA
1 GTTCTTGATTATGTAAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAAA
* * * * ** * ** * *
831386 TTGCCTTCCAAGCAAT-ATACCC-GACTTCAACTCTCGGTAAATACGTTTACGATAGTAAAAATT
66 TT-CCTTCCAAGCAATAAGACCCAG-GTTCGACTCCCGACAAAAACAATTACGACAGTAAAAAAT
** * ** *
831449 TAAGTTGAAAATTTTGAAAAGTAAAATGAGTAGTGTATACGTCTTGTTCTTGATTATGTGAAACA
129 TAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGATGTACTTGATTATGTGAAACA
* * * * * * * * *
831514 AATAGTGTAAAGATGAGGCATTTGTAGTCTAATGGTTAGGATAATTGCCTT-CTAAGCAATAGAC
194 AATAGTTTAAAGAAGAGCCATTTGTAGTCCAACGGTTTGGATAATTGCCTTAC-ATGAAATGGA-
* * * * * ** * *
831578 CTGGGTTCTACTC-CTGATAAAAGAAATTTTGATAGT-AAAAATTAA-GGAAAAACTTTT-AAAA
257 CTCGGCTCGACTCTC-GATAAATGTAATTACGATATTAAAAAATTAAGGGGAAAA-TTTTGAAAA
* * * * * * * * *
831639 ATAAACCAAATAGTGTATACCTTTTGTTATTGATTATGAGAAGCGAATAGTGTAAAGAGGAGGCG
320 GTAAAACGAATAGTGTATACCTTTTGTTCTTGATTATGTGAA-AGAATTGTGCAAAGAAGAGGCG
* * * * * ** ** *
831704 TTTGTTGTCTAACAGA-TACGATAATTGCCTTCCAAGCAATATAC-CTGGGTTCAACTTGCTGCA
384 TTTGTAGTCAAAC-GATTAGGATAATTGCCTTCCAAGCAATAGACTC-AGGTTTGACTCACGGCA
** * * * * * *
831767 AATGCAATTACAATAGTAAAATAATTAAGGGGTACATTTTAAAAAGTAAAACGAATAGTGTAAAC
447 AACACAATTACGATAGTAAAAT-ATTAAAGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATAC
* * * * * * * *
831832 ATTT-TTGCTTGATTATGTGAAATC-AATAGTGTAAAGAAGACGAGTTCGTAAT-CATACGGTTA
511 CTTTCGTCCTTGATTATGTGAAA-CGAATAATGTAAAGAAGAGGCGTTTGTAGTCCA-ACGGTTA
* * * * * * * * * *
831894 GGATAACT-GCCTTCCAAGCAATAGACCTGGGTTTGACT-ATCGACAAACGCAA-TCACGATAAT
574 AGATAA-TAACCTTCCAAGCAATAAACCCGGGTTCGACTCCT-AACAAATGCAACT-ACAATAGT
* * ** * * * *
831956 AAAAAAATAA-AGGAATTTTTTTGAAAAGTAAAACA-AATAGTGTTTACCT-TT
636 AAAAAATTAAGGGGAA-AATTTTAAAAAGTAAAA-AGAGTAGTGTATACATGTT
* * ** * * *
832007 CGTGCTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGTATTTGTAGTCCAATGGTTAGGCT-A
1 -GTTCTTGATTATGTAAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAA
* * * *** * * ** ** * ** *
832071 ATTACCTTACAAGCAA-CAGTCTTGGGTTTGACTCCTG-GTAAATGATTTACGATTGTAAAAACT
65 ATT-CCTTCCAAGCAATAAGACCCAGGTTCGACTCCCGACAAAAACAATTACGACAGTAAAAAAT
* * * * * * * *
832134 TAAGGGAAAAATTCTGAAAAGTAAAACGAGTAATTTATATGTGTTGTTA-TTCATTACGTGAAAC
129 TAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGATG-TACTTGATTATGTGAAAC
* * ** * * *
832198 AAATAGTATT-AATAAGAGGCC-TTTGTAGTCCAACGGTTAGGATAATTGCCTTGTAAGCAATAG
193 AAATAGT-TTAAAGAAGA-GCCATTTGTAGTCCAACGGTTTGGATAATTGCCTTACATGAAATGG
* * * ** *** * * *
832261 ACCCGGGTTCGACTCCCGGCAAACACAATCACGATAGTAAAATAATTAAGGGGAAAATATTGAAA
256 ACTC-GGCTCGACTCTCGATAAATGTAATTACGATATTAAAA-AATTAAGGGGAAAATTTTGAAA
* * * * * * * ** *
832326 AGTAAAATGAGTAGTGTATTCGTGTTGTTCTTGATTATGTGAAATAAATAGTTTAAATAAGAGGC
319 AGTAAAACGAATAGTGTATACCTTTTGTTCTTGATTATGTGAAA-GAATTGTGCAAAGAAGAGGC
* * * * *
832391 GTTTGTAGTCTAACGGTTAGGATAAATGCCTTCCAAGCAATAGACCCAGGTTCGACTC-CTGGCA
383 GTTTGTAGTCAAACGATTAGGATAATTGCCTTCCAAGCAATAGACTCAGGTTTGACTCAC-GGCA
* * * * * * **
832455 AACACAATTACGATAGTAAAAAATT-AGGGGGAGACTTTGAAAAGTAAAACGAGTAGTGTATAGG
447 AACACAATTACGATAGTAAAATATTAAAGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACC
* * * * * * * * * * *
832519 TGT-GCTTCTTTATTACGTGAAGCAAAT-ATTTAAAAAATTAGGCATTTGTAGTCCATTC-GTTA
512 TTTCG-TCCTTGATTATGTGAAACGAATAATGTAAAGAA-GAGGCGTTTGTAGTCCA-ACGGTTA
* ** * * * * * ** * ***
832581 GGATAATTGCATTCCAAACAATAGACCCAGGTTTGACTCGCGGA-AAATGCAATTTTGATAGTAA
574 AGATAATAACCTTCCAAGCAATAAACCCGGGTTCGACTC-CTAACAAATGCAACTACAATAGTAA
* * * * ** * * * * * *
832645 AAAATTAAGTGGTAAATTTTGATAAGTAAAACTAATAGTTTTTTTCCCTTTT
638 AAAATTAAGGGGAAAATTTTAAAAAGTAAAAAGAGTAG--TGTATACATGTT
* * * * * ** *
832697 GTGCTTAATTATGTGAAAA-TAATACTGTAAAGAAGAGGTGTTTGTAGTCCTATTG-TTAGAAT-
1 GTTCTTGATTATGT-AAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCC-AACGATTAGGATA
* * * * * * ** * * **
832759 AATTGCCTTGCAAGCAAT-AGACTCGGGTTTGAGTCTCGGTAAATGA-AATTATGATTGTAAAAC
64 AATT-CCTTCCAAGCAATAAGACCCAGGTTCGACTCCCGACAAA-AACAATTACGACAGTAAAA-
* * * * * * * * * * *
832822 AAAT-A---GTATA-TAT--ATA-T-ATA-TA-TACCT-T-T---T-ATG--CTTGATAATATAA
126 AATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTA-GTGTATACGTGATGTACTTGATTATGTGA
* * * * ** * ***** * ** *
832868 AACAAATAATGTAAATAGGAG-TTTTTAGTCCAATGGTTTGGATGTT--TTCCTTG-C-AAGCAA
190 AACAAATAGTTTAAAGAAGAGCCATTT-GT--AGTCCAACGG-T-TTGGATAATTGCCTTA-C-A
** * * * * * ** * *
832928 TAGACTCTGG-TTTGACT-TACT-GC-A-AATG-TAATTACAATAGTAAAAAATTAAGGGGAAAA
248 T-GA-AATGGACTCGGCTCGACTCTCGATAAATGTAATTACGATATTAAAAAATTAAGGGGAAAA
* * * * * *
832987 TATAGAAAAGTAAAACGATTAG-CTATACCTTTTGTTCTTGATTATGTGAAACAAATAT-TGTAA
311 TTTTGAAAAGTAAAACGAATAGTGTATACCTTTTGTTCTTGATTATGTGAAA-GAAT-TGTGCAA
* * * *
833050 AGAAGAGCCGTTTGTAGTCCAACTG-TTAGGATAATTGCCTTCCAAGTAATAGGCTC-GAGTTTG
374 AGAAGAGGCGTTTGTAGTCAAAC-GATTAGGATAATTGCCTTCCAAGCAATAGACTCAG-GTTTG
* * **
833113 ACTTATGGCAAACACAATTACGATAGTAAAATATT-AAGGGAAAA---TGAAAAAGTAAAATAAA
437 ACTCACGGCAAACACAATTACGATAGTAAAATATTAAAGGGAAAATTTTG-AAAAGTAAAACGAA
* * ** * * *
833174 AAGTGCATACCTTTCG-CGCTCAATTATGTGAAAGGAATAATGTAAAGAAGAGGCATTTGAAGTC
501 TAGTGTATACCTTTCGTC-CTTGATTATGTGAAACGAATAATGTAAAGAAGAGGCGTTTGTAGTC
* * *
833238 CAACGGTTAGGATAATAACCTTCCAAGGAATAAACCCGGGTTCGACTCCTAACAAATGCAACTAT
565 CAACGGTTAAGATAATAACCTTCCAAGCAATAAACCCGGGTTCGACTCCTAACAAATGCAACTAC
* *
833303 GATAGTAAAAAATTATGGGGAAAATTTTAAAAAGTAAAAAGAGTAGTGTATACATGTT
630 AATAGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAAAGAGTAGTGTATACATGTT
* *
833361 GTTCTTGATTATGTAAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTATGATAAA
1 GTTCTTGATTATGTAAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAAA
* * *
833426 TTCCTTCCAAGCAATAGAGATCCAGGTTCGACTCCCGACAAACACAATTACGATAGTAAAAAATT
66 TTCCTTCCAAGCAATA-AGACCCAGGTTCGACTCCCGACAAAAACAATTACGACAGTAAAAAATT
* *
833491 AAGGGGAAAATTTTGAAAAGTAAAATGAGTAGTGTATACGTGTTGTACTTGATTATGTGAAACAA
130 AAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGATGTACTTGATTATGTGAAACAA
* * *
833556 ATAGTTTAAAGAAGAGGCATTTGTAGTCCAACGGTTTGGATAATTGCCTTTCATGCAATGGACTC
195 ATAGTTTAAAGAAGAGCCATTTGTAGTCCAACGGTTTGGATAATTGCCTTACATGAAATGGACTC
* * * *
833621 GGTTTGACTCTCGATAAATGTAATTACGATATTAAAAAAATAAGGGAAAAATTTTGAAAAGTAAA
260 GGCTCGACTCTCGATAAATGTAATTACGATATTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAA
* * * ** * *
833686 ACGAGTAATGTATA-CTTGTTGTTCTTGATTATGTGAAAGAAATAGTGGGAATAAGAGGCATTTG
325 ACGAATAGTGTATACCTT-TTGTTCTTGATTATGTGAAAG-AATTGTGCAAAGAAGAGGCGTTTG
* * * *
833750 TAGTCAAATGATTATGA-AATTGCCTTCCAAGCAATAGA-TCTAGGTTCGACTCTCGGCAAACAC
388 TAGTCAAACGATTAGGATAATTGCCTTCCAAGCAATAGACTC-AGGTTTGACTCACGGCAAACAC
* * * * * * * *
833813 AATCACAATAATAAAATAATCAAGGGGAAAATTTTAAAAAGTAAAACGAATAGTGTAAACCTTTT
452 AATTACGATAGTAAAAT-ATTAAAGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCTTTC
* * * *
833878 GTCCTTGATTATGTGAAATGAATAATGTAAAGAAGATGTGTTTGTAGTCCAATGGTTAAGATAAT
516 GTCCTTGATTATGTGAAACGAATAATGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAAGATAAT
* * * * ** * * * *
833943 TACCTTCTAAGCAATATAA-TCGGGTTTGACTCCTTGCTAATGCGATTACAATAGTAACAAATTA
581 AACCTTCCAAGCAATA-AACCCGGGTTCGACTCCTAACAAATGCAACTACAATAGTAAAAAATTA
* * *
834007 AGGGGAAATTTTTGAAAAGTAAAACGAGTAGTGTATACATGTT
645 AGGGGAAAATTTTAAAAAGTAAAAAGAGTAGTGTATACATGTT
* * * * * *
834050 GTTCTTGATTATGTGAAACGAATAGTTTAAAGAATAGGCGTTTGTAGTCTAACGATTAGGATGAT
1 GTTCTTGATTATGTAAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAAA
** * * * * *
834115 TTGTTTCTAAGCAAT-A-CCCCTAGGTTCTACTCCCGGCAAAAACAAATTTAGGACAGTAAAAAA
66 TTCCTTCCAAGCAATAAGACCC-AGGTTCGACTCCCGACAAAAAC-AA-TTACGACAGTAAAAAA
* * * * * *
834178 TTAA-GGGAAATTTTTTGAAAAGTAAAACGAGTAGTTTGTATGTGATGTTCTTGATTATTTGAAA
128 TTAAGGGGAAA-ATTTTGAAAAGTAAAACGAGTAGTGTATACGTGATGTACTTGATTATGTGAAA
* * *
834242 TAAATAGTTTAAAGAAGAGCCCTTTGTAGTCCAACGGTTTGGATAATTGCCTTACTTGAAATGGA
192 CAAATAGTTTAAAGAAGAGCCATTTGTAGTCCAACGGTTTGGATAATTGCCTTACATGAAATGGA
* ** *
834307 -TCAGGGCTCGACTCTCGGTAAATGTAATTACGATATTAAAAAATTAAGGGGAATTTTTTTAAAA
257 CTC--GGCTCGACTCTCGATAAATGTAATTACGATATTAAAAAATTAAGGGGAAAATTTTGAAAA
* *
834371 GTAAAACGAATAGTGTATACCTTTTGTGCTTGATTATGTGAAATGAATTGTGCAAAGAAGAGGTG
320 GTAAAACGAATAGTGTATACCTTTTGTTCTTGATTATGTGAAA-GAATTGTGCAAAGAAGAGGCG
* * * * **
834436 TTAGTAGTCTAACGATTAGGATAATTACCTTCCAAGCAATAGACTCAGGTTTGACTCCCGAAAAA
384 TTTGTAGTCAAACGATTAGGATAATTGCCTTCCAAGCAATAGACTCAGGTTTGACTCACGGCAAA
*** * * * ** *
834501 TGTAATTACGATAGTAAAATATTAAAAGGAAAATTTTGAAAAGTAAAAGGAGTAGT-TATAGGTG
449 CACAATTACGATAGTAAAATATTAAAGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCTT
* * * * ** *
834565 TCGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGCTTGTAGTCCAACCATTAGGATA
514 TCGTCCTTGATTATGTGAAACGAATAATGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAAGATA
* * ** * * * * * * * *
834630 ATTGCACATTCCAAATAGTAGACCAGGGTTCGACTTGCC-GA-AAATTCAATTTCGATAGTAAAA
579 A-T-AACCTTCCAAGCAATAAACCCGGGTTCGAC-T-CCTAACAAATGCAACTACAATAGTAAAA
* * * * * * * * *
834693 AATTATGTGGTAAATTTTGAAAAGTAAAGAAAATAGTATTTATATACCTTTT
640 AATTAAGGGGAAAATTTTAAAAAGT--A-AAAAGAGTA-GTGTATACATGTT
* * ** * * * * * * *
834745 GTGCTTGATAAAATGAAACAAATAGTGTAAAG-AGTA---GTTTTTATTCCAATGGTTAGGAT-G
1 GTTCTTGATTATGTAAAACGAATAGTGTAAAGAAG-AGGCGTTTGTAGTCCAACGATTAGGATAA
* * * * ** * * *
834805 ATTGCCTTCCAAGAAAT-AGACTCTA-GTTCGACTTGCTG-CAAATGCAATTACAATAGTAAAAT
65 ATT-CCTTCCAAGCAATAAGAC-CCAGGTTCGAC-TCCCGACAAAAACAATTACGACAGTAAAAA
* * * * * ** * *
834867 ATTAAGTGGAAAATTTGGAAAAGTAAGACGATTAGCGTATATC-TTTTGTTCTTAATTATGTGAA
127 ATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATA-CGTGATGTACTTGATTATGTGAA
* * * * * * * * * *
834931 ACGAATACTATAAAGAAGAGGCGTTTGTAGTCCAACTGTTAGGATAAATT-CCTTCCAAGCAATA
191 ACAAATAGTTTAAAGAAGAGCCATTTGTAGTCCAACGGTTTGGAT-AATTGCCTTACATGAAAT-
* * * * * *** * *
834995 GG-CCCGAGTTTGACT-TATGAAAAACACAATTACGAT-TGTAAAAAGTTCAGGGGAAAATTTTG
254 GGACTCG-GCTCGACTCT-CGATAAATGTAATTACGATAT-TAAAAAATTAAGGGGAAAATTTTG
* * * * * * *
835057 AAAAGTAAAACAAATAGTATATACCTTTCG-TGTTGATTATGTGAAACAAATAGTG-TAAGAAAG
316 AAAAGTAAAACGAATAGTGTATACCTTTTGTTCTTGATTATGTGAAA-GAATTGTGCAAAG-AAG
* * * * * * * * *
835120 GGGTGTTTTTAGTTC-AACGGTTAGGATGATTGCCTTCCAAGCAATAAACCCGGGTTCGACTCAC
379 AGGCGTTTGTAG-TCAAACGATTAGGATAATTGCCTTCCAAGCAATAGACTCAGGTTTGACTCAC
* ** * * * **
835184 TGCAAATGCAATTACAATAGTAAAATATTAAGGGGAGAATTTTGAAATTTAAAACGAATA
443 GGCAAACACAATTACGATAGTAAAATATTAAAGGGAAAATTTTGAAAAGTAAAACGAATA
835244 ATGTTAAATA
Statistics
Matches: 4071, Mismatches: 970, Indels: 461
0.74 0.18 0.08
Matches are distributed among these distances:
663 43 0.01
664 180 0.04
665 15 0.00
666 165 0.04
667 11 0.00
668 122 0.03
669 41 0.01
670 16 0.00
671 8 0.00
672 139 0.03
673 226 0.06
674 13 0.00
675 23 0.01
676 15 0.00
677 13 0.00
678 200 0.05
679 146 0.04
680 12 0.00
681 20 0.00
682 7 0.00
683 32 0.01
684 10 0.00
685 254 0.06
686 485 0.12
687 388 0.10
688 293 0.07
689 625 0.15
690 348 0.09
691 126 0.03
692 42 0.01
693 8 0.00
694 9 0.00
695 36 0.01
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (687 bp):
GTTCTTGATTATGTAAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAAA
TTCCTTCCAAGCAATAAGACCCAGGTTCGACTCCCGACAAAAACAATTACGACAGTAAAAAATTA
AGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGATGTACTTGATTATGTGAAACAAA
TAGTTTAAAGAAGAGCCATTTGTAGTCCAACGGTTTGGATAATTGCCTTACATGAAATGGACTCG
GCTCGACTCTCGATAAATGTAATTACGATATTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAA
CGAATAGTGTATACCTTTTGTTCTTGATTATGTGAAAGAATTGTGCAAAGAAGAGGCGTTTGTAG
TCAAACGATTAGGATAATTGCCTTCCAAGCAATAGACTCAGGTTTGACTCACGGCAAACACAATT
ACGATAGTAAAATATTAAAGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCTTTCGTCCT
TGATTATGTGAAACGAATAATGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAAGATAATAACCT
TCCAAGCAATAAACCCGGGTTCGACTCCTAACAAATGCAACTACAATAGTAAAAAATTAAGGGGA
AAATTTTAAAAAGTAAAAAGAGTAGTGTATACATGTT
Found at i:836118 original size:172 final size:171
Alignment explanation
Indices: 835510--836362 Score: 889
Period size: 168 Copynumber: 5.0 Consensus size: 171
835500 TGGAAAGAAT
* *
835510 GTGTTGTTCTTAATTATGTGAAACAAATAGTGTAAAGATA-AGGCGTTTGTAGTCCAACAGATAG
1 GTGTTGTTCTTAATTATGTGAAACAAATAGTGTAAAGA-AGAGGCGTTTGTAGTCCAACGGTTAG
* * *
835574 GATAATTGCCTTCCAAGCAATAGACACGGGTTTGACTCCCCGCAAACGCAATTACGA-AGTAAAA
65 GATAATTGCCTTCCAAGCAATAGACTCGGGTTTGACTCCCAGCAAATGCAATTACGATAGTAAAA
* **
835638 AATTAA-GGGAAA-ATTGAAAAGTAAAATGAAAAGTGTATAC
130 AATTAAGGGGAAATTTTGAAAAGTAAAATGAGTAGTGTATAC
* * * ** * * **
835678 CT-TTCGTGCTCAATTATGTGAAAGGAATAGTATAAAGAAGAGGCGATTGTAGTCCAACGAATAG
1 GTGTT-GTTCTTAATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAG
* * * * * *
835742 GATAATTACCTTCCAAGCAATAG-CCCTAGGTTCGACTCCCAACAAATGCAACTACGATAGTAAA
65 GATAATTGCCTTCCAAGCAATAGACTC-GGGTTTGACTCCCAGCAAATGCAATTACGATAGTAAA
* * * * *
835806 AAATTAAGGGGAAAATTTTAAAAAGTAAAATCAATGGTATATAC
129 AAATTAAGGGG-AAATTTTGAAAAGTAAAATGAGTAGTGTATAC
* * ** * *
835850 ---ATGTTCTTAATTATGTAAAATGAA-AGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTATG
1 GTGTTGTTCTTAATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGG
* * **
835911 ATAATTTCCTTCCAAGCAATAGACTCGGGTTTGACTCCCGGCAAACACAATTACGATAGTAAAAA
66 ATAATTGCCTTCCAAGCAATAGACTCGGGTTTGACTCCCAGCAAATGCAATTACGATAGTAAAAA
*
835976 ATTAAGGGGACAATTTTGAACAGTAAAATGAGTAGTGTATAC
131 ATTAAGGGGA-AATTTTGAAAAGTAAAATGAGTAGTGTATAC
* * * * * * * *
836018 GTGTTATTCTTGATTATGTGAAACAAATATTTTAAAGAAGAGTCGTTTGAAGTTCAACGGTTTGG
1 GTGTTGTTCTTAATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGG
* * * * * ** * *
836083 ATAATTGCATTTCATGCAATGGACTCGGGTTTGACTCTCAGTTAATGTAATTACGATATTAAAAA
66 ATAATTGCCTTCCAAGCAATAGACTCGGGTTTGACTCCCAGCAAATGCAATTACGATAGTAAAAA
*
836148 ATTAAGGGGAAATTTTGAAAAGTAAAACGAGTAGTGTATAC
131 ATTAAGGGGAAATTTTGAAAAGTAAAATGAGTAGTGTATAC
* * * * *
836189 GTGTTGTTCTTGATTATGTGAAAGAAATAGTGTAAATAAGAGGTGTTTGTAGTCCAATGGTTAGG
1 GTGTTGTTCTTAATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGG
* * * * * * * ** * *
836254 ATAATTGCCTTCCAAGCAATAGACTCAGGTTCGTCTCCCGGTAAATTCAATCATAATAATTAAAT
66 ATAATTGCCTTCCAAGCAATAGACTCGGGTTTGACTCCCAGCAAATGCAATTACGAT-AGTAAAA
* * *
836319 AATTAAGGGGAAAATTTTAAAAACTAAAACGAGTAGTGTATAC
130 AATTAAGGGG-AAATTTTGAAAAGTAAAATGAGTAGTGTATAC
836362 G
1 G
836363 AGTAGTGAAA
Statistics
Matches: 565, Mismatches: 105, Indels: 25
0.81 0.15 0.04
Matches are distributed among these distances:
167 6 0.01
168 216 0.38
169 33 0.06
170 4 0.01
171 146 0.26
172 129 0.23
173 31 0.05
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (171 bp):
GTGTTGTTCTTAATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGG
ATAATTGCCTTCCAAGCAATAGACTCGGGTTTGACTCCCAGCAAATGCAATTACGATAGTAAAAA
ATTAAGGGGAAATTTTGAAAAGTAAAATGAGTAGTGTATAC
Found at i:837314 original size:171 final size:172
Alignment explanation
Indices: 836420--837688 Score: 1056
Period size: 171 Copynumber: 7.4 Consensus size: 172
836410 TTGGGGAAAG
* * * * * *
836420 TTTTAAAAAGTAAAACGAATATTGTATACATGTTGTTCTTGATTATGTGAACCGAATAATGTAAA
1 TTTTGAAAAGTAAAACGAATAGTGTATACCTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAA
* * * ** * * * *
836485 GAAGAGGCGTTCGCAGTCCAA-CGATCAATAATAATTTCCTTCCGAGCAATAGACCCAGGTTCAA
66 GAAGAGGCGTTTGTAGTCCAACCG-T-TAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGA
* * * ** * * ** *
836549 CTCCCAGCAAACACAATTACGATAGTAAAAAATTATGGGGAAAA
129 CTCACGGAAAATGCTATTACGATATTAAAAAATTAAAGGAAAAA
** * * * *
836593 TTTTGAAAAGTAAAATTAGTAGTGTATACGTGTTGTTCTTGATTATATGAAACAAATAGTTTAAA
1 TTTTGAAAAGTAAAACGAATAGTGTATACCTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAA
* * * * * * * *
836658 GAAGAGGCATTTTTGGTCCAACGGTTTGGATAATTGCCTTCCATGCAATGGACCTGGGTTCGACT
66 GAAGAGGCGTTTGTAGTCCAACCGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACT
** * * * * * *
836723 CTTGGTAAAT-ATAATTACGCTATTAAAAAATT-ACGGGAGAA
131 CACGGAAAATGCT-ATTACGATATTAAAAAATTAAAGGAAAAA
* * * * * *
836764 TTTTGAAAAGTAAAA-AAATAGTGTATGCCT-TTCATGCTTGATTATGTTAAACACATAGTGTAA
1 TTTTGAAAAGTAAAACGAATAGTGTATACCTGTT-GTTCTTGATTATGTGAAACAAATAGTGTAA
* * * * * **
836827 ATAAGAGGCGTTTGTATTCCAACGGTTAGGATAATTACCTTCCAAGGAATAGACTTGGGTTCGAC
65 AGAAGAGGCGTTTGTAGTCCAACCGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGAC
* ** * * * *
836892 TCCCGGCTAATGCAATTACGATAGTAAAAAATT-AAGGCGAAAT
130 TCACGGAAAATGCTATTACGATATTAAAAAATTAAAGG-AAAAA
** * * * ** *
836935 TTTTTTAAAGGAAAAC-AAGTGGTGTATACATGTTGTTCTTG-TTATGTGAAATGAATAGTATAA
1 TTTTGAAAAGTAAAACGAA-TAGTGTATACCTGTTGTTCTTGATTATGTGAAACAAATAGTGTAA
* * ** * **
836998 AGAAGAGCCATTTGTAGTCCAACAATTA-GAT--TT--TTTCCAAGCAATAGACCCGGGTTTTAC
65 AGAAGAGGCGTTTGTAGTCCAACCGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGAC
* ** * * * *
837058 TCTCGGCAAAA--AAATTAGGATATTAGAAAATTAATGGAAATA
130 TCACGG-AAAATGCTATTACGATATTAAAAAATTAAAGGAAAAA
**
837100 TTTTGAAAAGTAAAACGAGA-AGTGTATATGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAA
1 TTTTGAAAAGTAAAACGA-ATAGTGTATACCTGTTGTTCTTGATTATGTGAAACAAATAGTGTAA
* * *
837164 AGAAGAGGCGTTTGTAGTCCAACCGTTAGGATAATTGCCTTCGAAGCAGTAAACCCGGGTTCGAC
65 AGAAGAGGCGTTTGTAGTCCAACCGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGAC
** *
837229 TCACGGAAAATGCTATTTTGATATTAAAAAATTAAAGAAAAAA
130 TCACGGAAAATGCTATTACGATATTAAAAAATTAAAGGAAAAA
* * * ** *
837272 TTTT-AAAAGTAAAACGAATAGTGTATACCT-TTCGTGCTTGATTATATAAAATGAATTGTGTAA
1 TTTTGAAAAGTAAAACGAATAGTGTATACCTGTT-GTTCTTGATTATGTGAAACAAATAGTGTAA
* * * *
837335 A-AACGAGGCGTTAGTAGTCTAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGA
65 AGAA-GAGGCGTTTGTAGTCCAACCGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGA
** * * * * * * *
837399 CTCATAGCAAACG-TAATTACTATAGTAAAAAATTAATGGGAAAT
129 CTCACGGAAAATGCT-ATTACGATATTAAAAAATTAAAGGAAAAA
* **
837443 TTTTGAAAAGTAAAACGAGA-AGTGTAAATGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAA
1 TTTTGAAAAGTAAAACGA-ATAGTGTATACCTGTTGTTCTTGATTATGTGAAACAAATAGTGTAA
* *
837507 AGAAGAGGCGTTTGTAGTCCAACCGTTAGGATAATTGCCTTCCAAGCAGTAAACCCGGGTTCGAC
65 AGAAGAGGCGTTTGTAGTCCAACCGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGAC
* **
837572 TCACGAAAAATGCTATTTTGATATTAAAAAATTAAAGGGAAAAA
130 TCACGGAAAATGCTATTACGATATTAAAAAATTAAA-GGAAAAA
* * * * * ** *
837616 -TTT-AAAAGTAAAATGAATAGTGTACACCT-TTCGTGCTTGATTATATAAAATGAATTGTGTAA
1 TTTTGAAAAGTAAAACGAATAGTGTATACCTGTT-GTTCTTGATTATGTGAAACAAATAGTGTAA
837678 AGAAGAGGCGT
65 AGAAGAGGCGT
837689 GTCGCAACCG
Statistics
Matches: 864, Mismatches: 200, Indels: 66
0.76 0.18 0.06
Matches are distributed among these distances:
165 50 0.06
166 73 0.08
167 6 0.01
168 2 0.00
169 4 0.00
170 132 0.15
171 292 0.34
172 220 0.25
173 84 0.10
174 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (172 bp):
TTTTGAAAAGTAAAACGAATAGTGTATACCTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAA
GAAGAGGCGTTTGTAGTCCAACCGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACT
CACGGAAAATGCTATTACGATATTAAAAAATTAAAGGAAAAA
Found at i:837498 original size:343 final size:341
Alignment explanation
Indices: 836413--837686 Score: 1258
Period size: 343 Copynumber: 3.7 Consensus size: 341
836403 CCAACGGTTG
* * * ** * *
836413 GGGAAAGTTTTAAAAAGTAAAACGA-ATATTGTATACATGTTGTTCTTGATTATGTGAACCGAAT
1 GGGAAATTTTTGAAAAGTAAAACGAGATAGTGTATATGTGTTGTTCTTGATTATGTGAAACAAAT
* * * * ** * * *
836477 AATGTAAAGAAGAGGCGTTCGCAGTCCAA-CGATCAATAATAATTTCCTTCCGAGCAATAGACCC
66 AGTGTAAAGAAGAGGCGTTTGTAGTCCAACCG-T-TAGGATAATTGCCTTCCAAGCAATAAACCC
* * * * * ** ** *
836541 AGGTTCAACTCCCAGCAAACACAATTACGATAGTAAAAAATTATGGGGAAAATTTTGAAAAGTAA
129 GGGTTCGACTCACGGAAAATGCAATTACGATAGTAAAAAATTAAAGGAAAAATTTT-AAAAGTAA
** * * * * ** * *
836606 AATTAGTAGTGTATACGTGTTGTTCTTGATTATATGAAACAAATAGTTTAAAGAAGAGGCATTTT
193 AACGAATAGTGTATACCTGTTGTGCTTGATTATATAAAATGAATAGTGTAAAGAAGAGGCATTTG
* * * * *
836671 TGGTCCAACGGTTTGGATAATTGCCTTCCATGCAATGGACCTGGGTTCGACTCTTGGTAAATATA
258 TAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACC-GGGTTCGACTC-TGGCAAA-ATA
* *
836736 ATTACGCTATTAAAAAATT-AC
320 ATTACGATATTAAAAAATTAAT
* *** * * * *
836757 GGGAGAA-TTTTGAAAAGTAAAA--AAATAGTGTATGCCT-TTCATGCTTGATTATGTTAAACAC
1 GGGA-AATTTTTGAAAAGTAAAACGAGATAGTGTATATGTGTT-GTTCTTGATTATGTGAAACAA
* * * * * * **
836818 ATAGTGTAAATAAGAGGCGTTTGTATTCCAACGGTTAGGATAATTACCTTCCAAGGAATAGACTT
64 ATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACCGTTAGGATAATTGCCTTCCAAGCAATAAACCC
* ** * ** * *
836883 GGGTTCGACTCCCGGCTAATGCAATTACGATAGTAAAAAATTAAGGCGAAATTTTTTTAAAGGAA
129 GGGTTCGACTCACGGAAAATGCAATTACGATAGTAAAAAATTAAAG-GAAAAATTTTAAAAGTAA
* * * * * * *
836948 AAC-AAGTGGTGTATACATGTTGTTCTTG-TTATGTGAAATGAATAGTATAAAGAAGAGCCATTT
193 AACGAA-TAGTGTATACCTGTTGTGCTTGATTATATAAAATGAATAGTGTAAAGAAGAGGCATTT
** * ** *
837011 GTAGTCCAACAATTA-GAT--TT--TTTCCAAGCAATAGACCCGGGTTTTACTCTCGGCAAAAAA
257 GTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGA-CCGGGTTCGACTCT-GGCAAAATA
* *
837071 ATTAGGATATTAGAAAATTAAT
320 ATTACGATATTAAAAAATTAAT
837093 -GGAAATATTTTGAAAAGTAAAACGAGA-AGTGTATATGTGTTGTTCTTGATTATGTGAAACAAA
1 GGGAAAT-TTTTGAAAAGTAAAACGAGATAGTGTATATGTGTTGTTCTTGATTATGTGAAACAAA
* *
837156 TAGTGTAAAGAAGAGGCGTTTGTAGTCCAACCGTTAGGATAATTGCCTTCGAAGCAGTAAACCCG
65 TAGTGTAAAGAAGAGGCGTTTGTAGTCCAACCGTTAGGATAATTGCCTTCCAAGCAATAAACCCG
* ** * *
837221 GGTTCGACTCACGGAAAATGCTATTTTGATATTAAAAAATTAAAGAAAAAATTTTAAAAGTAAAA
130 GGTTCGACTCACGGAAAATGCAATTACGATAGTAAAAAATTAAAGGAAAAATTTTAAAAGTAAAA
* * *
837286 CGAATAGTGTATACCT-TTCGTGCTTGATTATATAAAATGAATTGTGTAAA-AACGAGGCGTTAG
195 CGAATAGTGTATACCTGTT-GTGCTTGATTATATAAAATGAATAGTGTAAAGAA-GAGGCATTTG
* * *
837349 TAGTCTAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCATAGCAAACGTA
258 TAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGAC-CGGGTTCGACTC-TGGCAAA-ATA
* *
837414 ATTACTATAGTAAAAAATTAAT
320 ATTACGATATTAAAAAATTAAT
*
837436 GGGAAATTTTTGAAAAGTAAAACGAGA-AGTGTAAATGTGTTGTTCTTGATTATGTGAAACAAAT
1 GGGAAATTTTTGAAAAGTAAAACGAGATAGTGTATATGTGTTGTTCTTGATTATGTGAAACAAAT
*
837500 AGTGTAAAGAAGAGGCGTTTGTAGTCCAACCGTTAGGATAATTGCCTTCCAAGCAGTAAACCCGG
66 AGTGTAAAGAAGAGGCGTTTGTAGTCCAACCGTTAGGATAATTGCCTTCCAAGCAATAAACCCGG
* * ** *
837565 GTTCGACTCACGAAAAATGCTATTTTGATATTAAAAAATTAAAGGGAAAAA-TTTAAAAGTAAAA
131 GTTCGACTCACGGAAAATGCAATTACGATAGTAAAAAATTAAA-GGAAAAATTTTAAAAGTAAAA
* * *
837629 TGAATAGTGTACACCT-TTCGTGCTTGATTATATAAAATGAATTGTGTAAAGAAGAGGC
195 CGAATAGTGTATACCTGTT-GTGCTTGATTATATAAAATGAATAGTGTAAAGAAGAGGC
837687 GTGTCGCAAC
Statistics
Matches: 780, Mismatches: 121, Indels: 59
0.81 0.13 0.06
Matches are distributed among these distances:
334 2 0.00
335 24 0.03
336 76 0.10
337 159 0.20
338 9 0.01
340 5 0.01
341 42 0.05
342 121 0.16
343 307 0.39
344 33 0.04
345 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (341 bp):
GGGAAATTTTTGAAAAGTAAAACGAGATAGTGTATATGTGTTGTTCTTGATTATGTGAAACAAAT
AGTGTAAAGAAGAGGCGTTTGTAGTCCAACCGTTAGGATAATTGCCTTCCAAGCAATAAACCCGG
GTTCGACTCACGGAAAATGCAATTACGATAGTAAAAAATTAAAGGAAAAATTTTAAAAGTAAAAC
GAATAGTGTATACCTGTTGTGCTTGATTATATAAAATGAATAGTGTAAAGAAGAGGCATTTGTAG
TCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCGGGTTCGACTCTGGCAAAATAATTACG
ATATTAAAAAATTAAT
Found at i:838023 original size:6 final size:6
Alignment explanation
Indices: 838012--838060 Score: 64
Period size: 6 Copynumber: 8.0 Consensus size: 6
838002 GGTTAGATTG
*
838012 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA -AAATGAA TAATAA TAAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAA--AA TAAAAA TAAAAA
838061 AAATCATTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
5 3 0.08
6 31 0.82
7 2 0.05
8 2 0.05
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (6 bp):
TAAAAA
Found at i:838035 original size:19 final size:19
Alignment explanation
Indices: 838012--838106 Score: 84
Period size: 19 Copynumber: 4.7 Consensus size: 19
838002 GGTTAGATTG
*
838012 TAAAAATAAAAATAA-AAA
1 TAAAAATAAAAAAAATAAA
*
838030 TAAAAATAAAAAAAATGAA
1 TAAAAATAAAAAAAATAAA
*
838049 TAATAATAAAAAAAATCATTAA
1 TAAAAATAAAAAAAAT-A--AA
* *
838071 TATAATAATAATAAAAATAAG
1 TA-AA-AATAAAAAAAATAAA
838092 TAAAAATAAATAAAA
1 TAAAAATAAA-AAAA
838107 GTGAGTAGAA
Statistics
Matches: 62, Mismatches: 8, Indels: 12
0.76 0.10 0.15
Matches are distributed among these distances:
18 14 0.23
19 22 0.35
20 6 0.10
21 3 0.05
22 4 0.06
23 2 0.03
24 11 0.18
ACGTcount: A:0.75, C:0.01, G:0.02, T:0.22
Consensus pattern (19 bp):
TAAAAATAAAAAAAATAAA
Found at i:838041 original size:25 final size:25
Alignment explanation
Indices: 838013--838106 Score: 75
Period size: 27 Copynumber: 3.6 Consensus size: 25
838003 GTTAGATTGT
838013 AAAAATAA-AAATAAAAATAAAAATA
1 AAAAA-AATAAATAAAAATAAAAATA
* *
838038 AAAAAAATGAATAATAATAAAAA-A
1 AAAAAAATAAATAAAAATAAAAATA
** *
838062 AATCATTAATATAATAATAATAAAAATA
1 AA--AAAAATA-AATAAAAATAAAAATA
*
838090 AGTAAAAATAAATAAAA
1 A-AAAAAATAAATAAAA
838107 GTGAGTAGAA
Statistics
Matches: 54, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
24 5 0.09
25 18 0.33
26 10 0.19
27 19 0.35
28 2 0.04
ACGTcount: A:0.76, C:0.01, G:0.02, T:0.21
Consensus pattern (25 bp):
AAAAAAATAAATAAAAATAAAAATA
Found at i:838061 original size:27 final size:27
Alignment explanation
Indices: 838013--838104 Score: 87
Period size: 28 Copynumber: 3.3 Consensus size: 27
838003 GTTAGATTGT
*
838013 AAAAATAAAAATAA-AAATAAAAATAAA
1 AAAAATAATAATAATAAA-AAAAATAAA
* *
838040 AAAAATGAATAATAATAAAAAAAATCAT
1 AAAAAT-AATAATAATAAAAAAAATAAA
* * *
838068 TAATATAATAATAATAAAAATAAGTAAA
1 AAAAATAATAATAATAAAAA-AAATAAA
838096 AATAAATAA
1 AA-AAATAA
838105 AAGTGAGTAG
Statistics
Matches: 51, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
27 20 0.39
28 23 0.45
29 8 0.16
ACGTcount: A:0.75, C:0.01, G:0.02, T:0.22
Consensus pattern (27 bp):
AAAAATAATAATAATAAAAAAAATAAA
Found at i:838122 original size:19 final size:19
Alignment explanation
Indices: 838011--838126 Score: 67
Period size: 19 Copynumber: 5.8 Consensus size: 19
838001 GGGTTAGATT
838011 GTAAAAATAA-AAATAA-AA
1 GTAAAAATAATAAA-AATAA
* *
838029 ATAAAAATAAAAAAAATGAA
1 GTAAAAATAATAAAAAT-AA
* *
838049 -TAATAATAAAAAAAATCATTA
1 GTAAAAATAATAAAAAT-A--A
*
838070 ATATAATAATAATAAAAATAA
1 GTA-AA-AATAATAAAAATAA
* *
838091 GTAAAAATAAATAAAAGTGA
1 GTAAAAAT-AATAAAAATAA
*
838111 GTAGAAATAATAAAAA
1 GTAAAAATAATAAAAA
838127 GATAAAAATA
Statistics
Matches: 79, Mismatches: 10, Indels: 17
0.75 0.09 0.16
Matches are distributed among these distances:
18 11 0.14
19 29 0.37
20 20 0.25
21 4 0.05
22 2 0.03
23 2 0.03
24 11 0.14
ACGTcount: A:0.72, C:0.01, G:0.06, T:0.22
Consensus pattern (19 bp):
GTAAAAATAATAAAAATAA
Found at i:839119 original size:19 final size:19
Alignment explanation
Indices: 839095--839155 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
839085 TGGACCTGCA
839095 ATATGTAACAT-AAAATAAT
1 ATATGTAA-ATAAAAATAAT
*
839114 ATATGTTAATAAAAATAAT
1 ATATGTAAATAAAAATAAT
* * *
839133 AATAT-TATATATATATAAT
1 -ATATGTAAATAAAAATAAT
839152 ATAT
1 ATAT
839156 TATACATATA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
18 6 0.17
19 25 0.71
20 4 0.11
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (19 bp):
ATATGTAAATAAAAATAAT
Found at i:839157 original size:18 final size:19
Alignment explanation
Indices: 839128--839167 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
839118 GTTAATAAAA
*
839128 ATAATAATATTATATATAT
1 ATAATAATATTATACATAT
839147 ATAAT-ATATTATACATAT
1 ATAATAATATTATACATAT
839165 ATA
1 ATA
839168 TATGTATGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (19 bp):
ATAATAATATTATACATAT
Found at i:840106 original size:106 final size:106
Alignment explanation
Indices: 839941--840135 Score: 302
Period size: 106 Copynumber: 1.8 Consensus size: 106
839931 CATCCGCCGC
* * * *
839941 GAAGTTGAAATTGGTTCTGGAACTGGGAAATTATTTGTTGACAACCAGTCATCCCTTCGTTGTGA
1 GAAGTTAAAATTGGCTCTGAAACTGGGAAATTATTTGTTGACAACCAGTCATCCATTCGTTGTGA
840006 AGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCACTGT
66 AGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCACTGT
* * *
840047 GAAGTTAAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAG-CTGTCCATTCGTTGTG
1 GAAGTTAAAATTGGCTCTGAAACTGGGAAATTATTTGTTGACAACCAGTC-ATCCATTCGTTGTG
*
840111 AAGTTGAACTTGTGTTGTCTTGAGT
65 AAGTTGAACTTGTGTTGTCTCGAGT
840136 GGCACGATAT
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
105 1 0.01
106 79 0.99
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.36
Consensus pattern (106 bp):
GAAGTTAAAATTGGCTCTGAAACTGGGAAATTATTTGTTGACAACCAGTCATCCATTCGTTGTGA
AGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCACTGT
Found at i:840377 original size:106 final size:106
Alignment explanation
Indices: 840184--841594 Score: 2401
Period size: 106 Copynumber: 13.3 Consensus size: 106
840174 GGCCCCTTCC
* *** *
840184 GAGTCCAATATCCTCCGCCATGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* *
840249 CCAGCGGTCCCTTTGTCATGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
840290 GAGTCCAATAGCCTTCGTTGTGAAGTTAAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
*
840355 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
840396 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGG-AGATTGTTTATTGACA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAG-TTGTTTATTGACA
*
840460 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTG
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
840502 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* *
840567 CCAGCGGTCCCTTCGTCGTAAAGTTGAACTTACGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
840608 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
*
840673 CCAGCAGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
840714 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAATTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
840779 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
840820 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
*
840885 CCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
840926 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* *
840991 CCAGCGGTCCCTTCGTCGTAAAGTTGAACTTACGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
841032 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTAAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
841097 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
841138 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
*
841203 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
841244 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTATGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
*
841309 CCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
841350 GAGTCCAATATTCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* *
841415 CCAGCGGTCCCTTCTTCGTGAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
** * *
841456 GAGTCCAATATCCTTCACTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
841521 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
841562 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATT
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATT
841595 TGACTCTAAA
Statistics
Matches: 1231, Mismatches: 72, Indels: 4
0.94 0.06 0.00
Matches are distributed among these distances:
105 2 0.00
106 1227 1.00
107 2 0.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:840386 original size:264 final size:264
Alignment explanation
Indices: 839916--840399 Score: 736
Period size: 264 Copynumber: 1.8 Consensus size: 264
839906 AGTTGTATTG
* * * *
839916 TTCCGAGTCCAATATCATCCGCCGCGAAGTTGAAATTGGTTCTGGAACTGGGAAATTATTTGTTG
1 TTCCGAGTCCAATATCATCCGCCACGAAGTTGAAATTGGCTCTGAAACTGGGAAATTATTTATTG
** * *
839981 ACAACCAGTCATCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCACTG
66 ACAACCAGTCATCCCTTCGTCATGAAGTTGAACTTGCGTTGTCTCGAGTCCAATAGCCTTCACTG
* * * *
840046 TGAAGTTAAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCTGTCCATTCGTTGTG
131 TGAAGTTAAAATTGGCTCTGAAATTGAGAAATTGTTTATTGACAACCAGCGGTCCATTCGTCGTG
*
840111 AAGTTGAACTTGTGTTGTCTTGAGTGGCACGATATCCCCCGTCGTGGAGTTAAAATCGCAGATGG
196 AAGTTGAACTTGCGTTGTCTTGAGTGGCACGATATCCCCCGTCGTGGAGTTAAAATCGCAGATGG
840176 CCCC
261 CCCC
* * * *
840180 TTCCGAGTCCAATATCCTCCGCCATGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTG
1 TTCCGAGTCCAATATCATCCGCCACGAAGTTGAAATTGGCTCTGAAACTGGGAAATTATTTATTG
* * * **
840245 ACAACCAG-CGGTCCCTTTGTCATGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAGCCTTCGTT
66 ACAACCAGTC-ATCCCTTCGTCATGAAGTTGAACTTGCGTTGTCTCGAGTCCAATAGCCTTCACT
* *
840309 GTGAAGTTAAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGT
130 GTGAAGTTAAAATTGGCTCTGAAATTGAGAAATTGTTTATTGACAACCAGCGGTCCATTCGTCGT
840374 GAAGTTGAACTTGCGTTGTCTTGAGT
195 GAAGTTGAACTTGCGTTGTCTTGAGT
840400 CCAATATCCT
Statistics
Matches: 195, Mismatches: 24, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
263 1 0.01
264 194 0.99
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.33
Consensus pattern (264 bp):
TTCCGAGTCCAATATCATCCGCCACGAAGTTGAAATTGGCTCTGAAACTGGGAAATTATTTATTG
ACAACCAGTCATCCCTTCGTCATGAAGTTGAACTTGCGTTGTCTCGAGTCCAATAGCCTTCACTG
TGAAGTTAAAATTGGCTCTGAAATTGAGAAATTGTTTATTGACAACCAGCGGTCCATTCGTCGTG
AAGTTGAACTTGCGTTGTCTTGAGTGGCACGATATCCCCCGTCGTGGAGTTAAAATCGCAGATGG
CCCC
Found at i:845227 original size:15 final size:16
Alignment explanation
Indices: 845204--845254 Score: 61
Period size: 15 Copynumber: 3.2 Consensus size: 16
845194 AGATTGTAAA
845204 AATAAAAATAAATATT
1 AATAAAAATAAATATT
* *
845220 AA-AAAAATGAATAAT
1 AATAAAAATAAATATT
845235 AATAAAAA-AAATCATT
1 AATAAAAATAAAT-ATT
845251 AATA
1 AATA
845255 TAATAATAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 16 0.55
16 13 0.45
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (16 bp):
AATAAAAATAAATATT
Found at i:845257 original size:18 final size:18
Alignment explanation
Indices: 845214--845257 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
845204 AATAAAAATA
* *
845214 AATATTAAAAAAATGAAT
1 AATATAAAAAAAATCAAT
*
845232 AATAATAAAAAAAATCATT
1 AAT-ATAAAAAAAATCAAT
845251 AATATAA
1 AATATAA
845258 TAATAATAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (18 bp):
AATATAAAAAAAATCAAT
Found at i:845281 original size:27 final size:26
Alignment explanation
Indices: 845219--845286 Score: 66
Period size: 27 Copynumber: 2.5 Consensus size: 26
845209 AAATAAATAT
*
845219 TAAAAAAATGAATAATAATAAAAAAAA
1 TAAAAATAT-AATAATAATAAAAAAAA
** *
845246 TCATTAATATAATAATAATAAAAATAAG
1 T-AAAAATATAATAATAATAAAAA-AAA
845274 TAAAAATA-AATAA
1 TAAAAATATAATAA
845287 AAGTGAGTAG
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
26 5 0.15
27 20 0.61
28 8 0.24
ACGTcount: A:0.71, C:0.01, G:0.03, T:0.25
Consensus pattern (26 bp):
TAAAAATATAATAATAATAAAAAAAA
Found at i:845287 original size:20 final size:20
Alignment explanation
Indices: 845222--845327 Score: 76
Period size: 19 Copynumber: 5.2 Consensus size: 20
845212 TAAATATTAA
* *
845222 AAAAATGAATAATAATAAA-
1 AAAAATGAGTAAAAATAAAT
* *
845241 AAAAATCATTAATATAATAATAAT
1 AAAAATGAGTAA-A-AAT-A-AAT
*
845265 AAAAATAAGTAAAAATAAAT
1 AAAAATGAGTAAAAATAAAT
* *
845285 AAAAGTGAGTAGAAAT-AAT
1 AAAAATGAGTAAAAATAAAT
845304 AAAAA-GA-TAAAAATATAAT
1 AAAAATGAGTAAAAATA-AAT
845323 AAAAA
1 AAAAA
845328 CAAAACATAA
Statistics
Matches: 70, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
17 6 0.09
18 2 0.03
19 25 0.36
20 16 0.23
21 4 0.06
22 4 0.06
23 3 0.04
24 10 0.14
ACGTcount: A:0.70, C:0.01, G:0.07, T:0.23
Consensus pattern (20 bp):
AAAAATGAGTAAAAATAAAT
Found at i:845288 original size:19 final size:19
Alignment explanation
Indices: 845266--845326 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 19
845256 AATAATAATA
845266 AAAATAAGTAAAAATAAAT
1 AAAATAAGTAAAAATAAAT
* *
845285 AAAAGTGAGTAGAAAT-AAT
1 AAAA-TAAGTAAAAATAAAT
845304 -AAA-AAGATAAAAATATAAT
1 AAAATAAG-TAAAAATA-AAT
845323 AAAA
1 AAAA
845327 ACAAAACATA
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
16 2 0.06
17 6 0.18
18 3 0.09
19 10 0.30
20 12 0.36
ACGTcount: A:0.70, C:0.00, G:0.10, T:0.20
Consensus pattern (19 bp):
AAAATAAGTAAAAATAAAT
Found at i:846334 original size:16 final size:18
Alignment explanation
Indices: 846310--846349 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
846300 TAATAAAAAA
* *
846310 ATAATAATATTATATATAT
1 ATAAT-ATATAATACATAT
846329 ATAATATATAATACATAT
1 ATAATATATAATACATAT
846347 ATA
1 ATA
846350 TGTATGTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (18 bp):
ATAATATATAATACATAT
Found at i:846703 original size:172 final size:173
Alignment explanation
Indices: 846389--846837 Score: 492
Period size: 172 Copynumber: 2.6 Consensus size: 173
846379 CAAGGCGTTA
* * * * ** *
846389 GTAGTCTAACGGTTAGGATAATTACCTTTCAAGTAATAGACTCGGGTTCGACTCACAGCAAACGT
1 GTAGTCCAACCGTTAGGATAATTGCCTTCCAAGTAATAGACTCGGGTTCGACTCATGGCAAACGA
* * * * **
846454 AATTACTATAGTAAAAAATTAA-TGGGAAATTTTTGAAAAGTAAAACGAGTAGTGTATAGGTGTT
66 AATTACGATAGTAAAAAATTAAGT-GGAAAATTTTGAAAAGTAAAACGAATAATGTATACCTGTT
* * * *
846518 GTTATTGATTATGTG-AAAC-AAATAGTGTATAGAAGAGGTGTTT
130 GTGATTCATTATGTGAAAACTAAA-ACTGTAAAGAAGAGGTGTTT
* * ** * * *
846561 GTAGTCCAACCGTTAGGATAATTGCCTGCCAAGTAGTAGACTCAAGTTCGACTCGTGGAAAATGA
1 GTAGTCCAACCGTTAGGATAATTGCCTTCCAAGTAATAGACTCGGGTTCGACTCATGGCAAACGA
* * * *
846626 AATTTCGATAGTAAAAAATTAAGTGGAAAATTTTGAAAAGTAAAACGAATAATTTTTACCTTTTG
66 AATTACGATAGTAAAAAATTAAGTGGAAAATTTTGAAAAGTAAAACGAATAATGTATACCTGTTG
846691 TGATTCATTATGTGAAAACTAAAACTGTAAAGAAGAGGTGTTT
131 TGATTCATTATGTGAAAACTAAAACTGTAAAGAAGAGGTGTTT
* ** ** ** * * *
846734 G-AGGTCCTATTGTTAGGATAATTGTTTTCCAACAAATAGACTCGGGTTTGAATCCTGGCAAACG
1 GTA-GTCCAACCGTTAGGATAATTGCCTTCCAAGTAATAGACTCGGGTTCGACTCATGGCAAACG
*
846798 AAATTACGATTGTAAAAAATTAAGTGGAAAATTTTGAAAA
65 AAATTACGATAGTAAAAAATTAAGTGGAAAATTTTGAAAA
846838 AATAAAGAAA
Statistics
Matches: 227, Mismatches: 46, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
172 117 0.52
173 107 0.47
174 3 0.01
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (173 bp):
GTAGTCCAACCGTTAGGATAATTGCCTTCCAAGTAATAGACTCGGGTTCGACTCATGGCAAACGA
AATTACGATAGTAAAAAATTAAGTGGAAAATTTTGAAAAGTAAAACGAATAATGTATACCTGTTG
TGATTCATTATGTGAAAACTAAAACTGTAAAGAAGAGGTGTTT
Found at i:847401 original size:170 final size:171
Alignment explanation
Indices: 846977--847525 Score: 518
Period size: 171 Copynumber: 3.2 Consensus size: 171
846967 GTTATACCTT
* ** * ** * *
846977 TTGTGCTTGATTATGTGAAAGGAATATTGTAAAGAAGAGACCCTTGTAGTCCAACTGCTAGGATA
1 TTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGACGTTTGTAGTCCAACAGTTAGGATA
** * * * * *
847042 ATTGCCTTGC-AAGCAATAGGCCCGGGTTTAACTTCAGGCAAATGCAATTACAATTGTAAAAAGT
66 ATTGCCTT-CTAAGCAATAGGCCCGGGTTCGACTCCCGGTAAATGCAATTACAATAGTAAAAAAT
* * *
847106 TATGGGGAAATTTTTGGAAAGTAAAACA-AATAGTATATA-ACTT
130 TA-GGGGAAAATTTTGAAAAGTAAAA-AGAATAGTATATACAC-C
* * * * * *
847149 TTGTGCTTGATTATGTGAAACAAAAAAATGTAAAAAAGAGGCGCTTT-TAGTTCAACAGTTAGGA
1 TTGTTCTTGATTATGTGAAAC-AAATAGTGTAAAGAAGAGACG-TTTGTAGTCCAACAGTTAGGA
* * * *
847213 TGATTGCCTT-TCAAGCAATAGACCTGGGTTCGACTGCCGGTAAATG-AATTACAATAGTAAAAA
64 TAATTGCCTTCT-AAGCAATAGGCCCGGGTTCGACTCCCGGTAAATGCAATTACAATAGTAAAAA
* * * * * *
847276 AATAAGGGAAAATTTTGAAAAGTGAAATGAGTAGTGTATACACC
128 ATTAGGGGAAAATTTTGAAAAGTAAAAAGAATAGTATATACACC
* * * * *
847320 TTGTTATAGATTATGTGAAACAAATAGTGTAAAGATGAGATGTTTGTAGTCCAACGGTTAGGATA
1 TTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGACGTTTGTAGTCCAACAGTTAGGATA
* * *
847385 ATTGCCTTCTAAGCAATAGGCCCGGGTTCGACTCCCGTTAAACGCAATTATGAA-AGTAAAAAAT
66 ATTGCCTTCTAAGCAATAGGCCCGGGTTCGACTCCCGGTAAATGCAATTA-CAATAGTAAAAAAT
* * * ***
847449 TAGGGGGACATTTTGAAAAGTAAAAAGACTAGTATATACGTG
130 TAGGGGAAAATTTTGAAAAGTAAAAAGAATAGTATATACACC
* * *
847491 TTGTTCTTGATTATCTGGAACTAATAGTGTAAAGA
1 TTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
847526 CATAGGTTCG
Statistics
Matches: 303, Mismatches: 64, Indels: 21
0.78 0.16 0.05
Matches are distributed among these distances:
169 3 0.01
170 68 0.22
171 123 0.41
172 42 0.14
173 65 0.21
174 2 0.01
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (171 bp):
TTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGACGTTTGTAGTCCAACAGTTAGGATA
ATTGCCTTCTAAGCAATAGGCCCGGGTTCGACTCCCGGTAAATGCAATTACAATAGTAAAAAATT
AGGGGAAAATTTTGAAAAGTAAAAAGAATAGTATATACACC
Found at i:847852 original size:173 final size:172
Alignment explanation
Indices: 847581--852518 Score: 2435
Period size: 172 Copynumber: 28.4 Consensus size: 172
847571 AGGGAATTTT
* * * * * * *
847581 TTTTAAAAA-TAAACCAAATAGTGTATACCTTTTATGCTTGATTATGAT-AAGCAAATAGTGTAA
1 TTTTAAAAAGTAAAACGAGTAGTGTATACGTTTTGTTCTTGATTATG-TGAAACAAATAGTGTAA
* * * * * * * **
847644 CGAATAAGCATTTGTTGTCTAACAGTTATGATAATTGCCTTCCAAGCAATAGACATGGGTTCGAC
65 AGAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGAC
* * *
847709 TTGATGCAAATGCAATTACAATAGTAAAATAATTAAGGGGAAAA
130 TCGATGCAAACGCAATTACGATAGTAAAA-AATTAAGGGGAAAA
* * * * * * * *
847753 TTTTAAAAATTAAAACGAATAGTGTAAACCTTTTGTGCTTGATTATATGAAATAAATATTGTAAA
1 TTTTAAAAAGTAAAACGAGTAGTGTATACGTTTTGTTCTTGATTATGTGAAACAAATAGTGTAAA
* ** * * * * * *
847818 GAAGTGGTGTTTGTAATACAAAGGTTAGGATAATTACGTTCCAAGCAATAGACCCGGGTTTGACT
66 GAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACT
* * * *
847883 C-TTGGCAAACACAATCACGATAGTAAAAAATTAAGGGGAAAT
131 CGAT-GCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAA
* ** * * * * **
847925 TTTTGAAAAGTAAAACGAACAGTG-ATTACCTTTCGTGCTTGATTATGTAAAATGAATAGTGTAA
1 TTTTAAAAAGTAAAACGAGTAGTGTA-TACGTTTTGTTCTTGATTATGTGAAACAAATAGTGTAA
* * * * * *
847989 AGAATAGGTATTTGTAATCCACCGGTTAGGCTAATTACCTTCCAAGCAATAGACCCGGGTTCGAC
65 AGAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGAC
*** * ** *
848054 TCCCGGCAAATG-AATTACGATTTTAAAAAAGT-A-GGGAAAA
130 TCGATGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAA
** * * *
848094 TTTTAAAAAGTTTAACGAGTAGTGTGTACGTGTTGTTCTAGATTATGTG------A-A---T---
1 TTTTAAAAAGTAAAACGAGTAGTGTATACGTTTTGTTCTTGATTATGTGAAACAAATAGTGTAAA
* * * *
848146 -AAGAGGCGTTTGTAGTCCAACGGTTAGGATAAATGCCTTCCAAGTAATAGACCCGAGTTCGACT
66 GAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACT
* * * * **
848210 CCCA-ACAAACGGAATGAAAATAGTAAAAAATTAAGGGGAAAA
131 -CGATGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAA
* *
848252 TTTTAAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAA
1 TTTTAAAAAGTAAAACGAGTAGTGTATACGTTTTGTTCTTGATTATGTGAAACAAATAGTGTAAA
* * * * * * *
848317 GATGAGGCGTTTGTAGTCCAACGGTTAGGATAATTTCCCCTTCCAATCAATATACTCGGGTTCAA
66 GAAGAGGCATTTGTAGTCCAACGGTTAGGATAA-TT-GCCTTCCAAGCAATAGACCCGGGTTCGA
* *
848382 CTCCCGAT--AAACGCAATTACGATGGTAAAAAATTAAGGGTAAAA
129 CT--CGATGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAA
* * * * * * * *
848426 TGTTGAAAAGTAAAATGAGTAGTGTGTACGTATTGTTCTTGTTTGTGTGAAACAAATAACT-TAA
1 TTTTAAAAAGTAAAACGAGTAGTGTATACGTTTTGTTCTTGATTATGTGAAACAAAT-AGTGTAA
* * ** * * * * * * * *
848490 ATAAGAGGCATTTTTAGTCCAACAATTAGGACAATTTCCTTCTAGGCAAAAGGCTCTGGTTCGAC
65 AGAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGAC
*** * * *
848555 TCCCGGTAAACACAATTACGATTGTAAAAAAATTAAAGGGG-AAA
130 TCGATGCAAACGCAATTACGATAGT-AAAAAATT-AAGGGGAAAA
* * * * * * *
848599 TGTTT-AAAAGTAAAACGAATAATGTATACGTGTTATTCGTGATTATGTGAAACAAATAGTTTTA
1 T-TTTAAAAAGTAAAACGAGTAGTGTATACGTTTTGTTCTTGATTATGTGAAACAAATAGTGTAA
* * * * *
848663 AGAAGAGGCGTTTGTACTCCAACGGTTAGGATAATTGCCTTCTAAGCAATAGAACCAGGTTCGAC
65 AGAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGAC
* * * **
848728 TCG-GGAAAATGCAATTACGATAGTAAAAACACTTACCGGGAAAA
130 TCGATGCAAACGCAATTACGATAGTAAAAA-A-TTAAGGGGAAAA
* * * * *
848772 TTTTGAAAAGTAAAACGAGTAGTATATA-GTTGTTGTTCGTGATTATGTGAAATAAATAGTGCAA
1 TTTTAAAAAGTAAAACGAGTAGTGTATACGTT-TTGTTCTTGATTATGTGAAACAAATAGTGTAA
* ** *
848836 AGAAGAGGCATTTGTAGTCCAACGCTTAGGATAATTGCCTTCCAAGCAATAGACCTTGGTTCAAC
65 AGAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGAC
* * * **
848901 TCCCG-T-CAAATG-AATTAC-ATTAGCAAAAAATCAAAAGG-AAA
130 T--CGATGCAAACGCAATTACGA-TAGTAAAAAATTAAGGGGAAAA
* * * * *
848942 TTTTAAAAAGTAAAACCAGTTGTGTATACGTGTTT-TTATTCATTATTATGAAACAAATAGTGTA
1 TTTTAAAAAGTAAAACGAGTAGTGTATACGT-TTTGTTCTTGATTA-TGTGAAACAAATAGTGTA
* * *
849006 AATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCAGGTTGGA
64 AAGAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGA
*
849071 CTTCCGA--CAAACGCAATTATGATAGTAGTAAAAATTAAGGGGAAAA
129 C-T-CGATGCAAACGCAATTACGATAGTA--AAAAATTAAGGGGAAAA
* * * * * * *
849117 TTTTGAAAAGTAAAACAAGAAATGTACATGTTTTGTTCTTGATTATGTGAAACAAATAGCGTAAA
1 TTTTAAAAAGTAAAACGAGTAGTGTATACGTTTTGTTCTTGATTATGTGAAACAAATAGTGTAAA
* * ** *** * * *
849182 GAGGAGGTATTTGTCTTCCAACCACTAGGATAATTGCCTTCCAGGCAAGAAACCCGGGTTCGAC-
66 GAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACT
* * * * * * *
849246 AGGTGAAAAAGGCAATTTCGATAGTAAAAAAATAAGGGGACAA
131 CGATG-CAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAA
* * * * * * ** * * * * *
849289 TTTTGAAAAGTAAAACAATTATTTTTTTACCGTGGTATAATT-TTGA-AAAGTAAAAAAAAATTG
1 TTTTAAAAAGTAAAACGAGTA-GTGTATA-CGT--T-TTGTTCTTGATTATGT-GAAACAAATAG
* ****** ** * ** * * * ** ***
849352 TGTTTACCTTTCGTGCTTGATTACATG-AAACAAATAGTGTA-AAGAATAGGTATTTGTAGTCAA
60 TG-TAAAGAAGAG-GC---ATT---TGTAGTCCAACGGT-TAGGATAAT-TGCCTTCCAAG-CAA
**** * * * * ** * ** * * *
849415 -ACGGTTAGGCTAAT-TACCTTCCAAGCAATAGACCCGGGATCAACTCTCGGCAAATGAATTACG
114 TA-GACCCGGGT--TCGA-C-TCGATGC-A-A-A--CGCAAT-TACGAT-AGTAAA-AAATTA--
****
849478 ATTATAAAA
164 AGGGGAAAA
** ** * * ** ** **** * * * *
849487 AATT-AAGGGGAAAATTTTGAAAAGTAAATTGA-GTAACATATATGTGTTTTTCTTGAATATGTA
1 TTTTAAAAAGTAAAA---CGAGTAGTGTA-T-ACGTTTTGT-TCT-TGATTAT-GTG--------
* * * * *
849550 AAAGAAATAGTGTGAATAAGAGGCGTTTGTAATCCAACGGTTAGGATAATTGCCTTCCAAGCAAT
50 AAACAAATAGTGTAAAGAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAAT
*** * * * * * *
849615 AGACCCGGGTTCGACTCTCGGCAATCGCAATGACAATTGTAAAATATTAAGGAGAAAA
115 AGACCCGGGTTCGACTCGATGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAA
* * * * * *
849673 CTTTAAAAAGTAAAACGAGTAGTGTATACATGTTATTCTTGATTATTTGAAACAAATAATGTAAA
1 TTTTAAAAAGTAAAACGAGTAGTGTATACGTTTTGTTCTTGATTATGTGAAACAAATAGTGTAAA
* * * * * *
849738 -AATGAGGCATTTGTAGTCCAACGGTTAGGATAATTACCTTCCAATCAATATACTCAGATTCGAC
66 GAA-GAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGAC
* *
849802 TCCCGA--CAAACACAATTACGATGGTAAAAAATTAAGGGGAAAA
130 T--CGATGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAA
* * * * * *
849845 TGTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTATTGTTTATGTAAAACAAATAGCT-TAA
1 TTTTAAAAAGTAAAACGAGTAGTGTATACGTTTTGTTCTTGATTATGTGAAACAAATAG-TGTAA
* * * * * * ** * ***
849909 ATAAAAGGCATTTTTTCTTGTTTATGTGAAACAAATAGCTTA-AATAAAAGGCATTTTTAGTCCA
65 AGAAGAGGCA-----T-TTG--TA-GT----CCAA-CGGTTAGGAT-AATTGCCTTCCAAG--CA
* *** * *** * * * *
849973 ACA-ATTAGGATAATTTCCTTCCAAGCAAAAGACTCGGGTTTGACTCCTGGTAAACACAATTACG
113 ATAGACCCGGGT--TCGAC-TCGATGCAA---A--C------G----C---AAT-------TACG
*
850037 ATAGTAAAAAACTTACGGGG-AAA
150 ATAGTAAAAAA-TTAAGGGGAAAA
* * * * * *
850060 TGTTT-AAAAGTAAAATGAGTAGTGTATACGTGTTATTCGTGATTATGTAAAACAAATAGTTTAA
1 T-TTTAAAAAGTAAAACGAGTAGTGTATACGTTTTGTTCTTGATTATGTGAAACAAATAGTGTAA
** ** * * * **
850124 AGAAGAGGTGTTTGTAGTCCAACGGTTTTGATAATTGCCTTCTAAGCAATAGACTCAGGTTTAAC
65 AGAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGAC
* * * *
850189 TCCG-GGAAAAACACAATTACGATAGTAAAAAATCAA-GGGAAAA
130 T-CGATG-CAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAA
* * * * *
850232 TTTTGAAAAGTAATACGAGTAGTGTATAGGTGTTGTTCTTAATTATGTGAAACAAATAGTGTAAA
1 TTTTAAAAAGTAAAACGAGTAGTGTATACGTTTTGTTCTTGATTATGTGAAACAAATAGTGTAAA
* ** * *
850297 GAAGAGGCGTTTGTAGTCCAACAATTAGGATAATTGCCTTCCAAGCAATAGAACTGGGTTCGACT
66 GAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACT
* * * * ** *
850362 C--TCGTCAAATG-AATTAAGGTAATAAAAAATTAATAGGAAAT
131 CGAT-G-CAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAA
* *
850403 TTTTAGAAAGTAAAACGAGTAGTGTATACGTGTTT-TTCTTTATTATGTGAAACAAATAGTGTAA
1 TTTTAAAAAGTAAAACGAGTAGTGTATACGT-TTTGTTCTTGATTATGTGAAACAAATAGTGTAA
* * * * * * * *
850467 ATAAGAGGCGTATGTATTCCAAGGGTTAGGATAATTGCCTTCCAAGCGATAGATCTGGGTTCGAC
65 AGAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGAC
* ** *
850532 TGCCGAT--AAACACAATCGCGATCGTAAAAAATTAAGGGGAAAA
130 T--CGATGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAA
* * * * ** *
850575 TTTTGAAAAGTAAAACAAGTAGTGTATTAC---ATGTTCTTGCTTACCTGAAAAAAATAAACAGT
1 TTTTAAAAAGTAAAACGAGTAGTGTA-TACGTTTTGTTCTTGATTATGTGAAACAAAT----AGT
* * * * * *** * *
850637 GTAAAGATGACGCGTTCGTAGTCCTATATTTAGGATAATTGCCTCTTCCAATCAATAGACTCGGG
61 GTAAAGAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTG-C-CTTCCAAGCAATAGACCCGGG
* * * *
850702 TTCGTAGTCG-T----ATGTAATTACGATAGTAAACAATTAAGGGGAAAA
124 TTCG-ACTCGATGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAA
* * * * *
850747 TGTTGAAAAGTAAAATGAGTATTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGCT-TAA
1 TTTTAAAAAGTAAAACGAGTAGTGTATACGTTTTGTTCTTGATTATGTGAAACAAATAG-TGTAA
* * ** * * ** **
850811 ATAAGAGGCATTT-TTGTCCAACAATTAGG-TAATTTG-CTTCCAAGCAAAAGGCGTGGAATCGA
65 AGAAGAGGCATTTGTAGTCCAACGGTTAGGATAA-TTGCCTTCCAAGCAATAGACCCGGGTTCGA
* * * *
850873 CTC--TGGTAAACACAATTACGATAGTAAAAAATTATGGGGGAAA
129 CTCGAT-GCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAA
* * * * *
850916 TTTTGAAAAGTAAAACGAGTAGTGTATACATTTTATTCTTGATTATGTGAAAAAAATAGTTTAAA
1 TTTTAAAAAGTAAAACGAGTAGTGTATACGTTTTGTTCTTGATTATGTGAAACAAATAGTGTAAA
** * * * * *
850981 GAAGAGGTGTTTGTAGTCCAGCGGCTAGGATTAATTGCCTTCCAAACAATAGACCCAGGTTCAAC
66 GAAGAGGCATTTGTAGTCCAACGGTTAGGA-TAATTGCCTTCCAAGCAATAGACCCGGGTTCGAC
* * * * * *
851046 TC-CTGGCAAACACAATTACAATAGTAAACAATTAAGGAGAAAT
130 TCGAT-GCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAA
* * * * * *
851089 TTTTTAAAAGTAAAATGAGTAGTGTATAGGTGTTGTTCTTGATTATGTGAACCAAATAGTGTAAG
1 TTTTAAAAAGTAAAACGAGTAGTGTATACGTTTTGTTCTTGATTATGTGAAACAAATAGTGTAAA
* * * * *
851154 GAAGAGGCATTTGTAGTCCAACTGTTTGGATAAAAATT-CCTTCCAAACAGTAGACCCGAGTTCG
66 GAAGAGGCATTTGTAGTCCAACGGTTAGGAT---AATTGCCTTCCAAGCAATAGACCCGGGTTCG
* ** * * ** * * *
851218 ACTTGGGGAAAATGCAATTTTGATAGTAAAGAATTAAGTGGTAAA
128 ACTCGATGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAA
* * * * *
851263 TTTTGAAAAGTAAAACAAGTAGTGTATACGTGTTGTTCTTGATTGTGTGAAACAAATAGTTTAAA
1 TTTTAAAAAGTAAAACGAGTAGTGTATACGTTTTGTTCTTGATTATGTGAAACAAATAGTGTAAA
** ** * * * * * * *
851328 GAAGAGGTGTTTGTAGTCCAACATTTTGGATAATTCCCTTTCATGCAATGGACTCGGGTTTGACT
66 GAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACT
*** ** * * * *
851393 CTCGGTTAATGTAATTATGATATTAAAAAA-TAAGGGGAAAA
131 CGATGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAA
* * * *
851434 TTTTGAAAAGTAAAACGAGTAG-GTTATACGTGTTT-TTCTTGATTATGTGAAAGAAACAGTGTG
1 TTTTAAAAAGTAAAACGAGTAGTG-TATACGT-TTTGTTCTTGATTATGTGAAACAAATAGTGTA
* ** * * * *
851497 AATAAGAGGTGTTTGTAGTCCAATGGTTAGAATAATTGTCTTCCAAGCAATTGACCCGGGTTCGA
64 AAGAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGA
* * *
851562 CTCCCGA--CAAACGCAATGACAATTGT-AAAAATTAAGGGG-AAA
129 CT--CGATGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAA
* * * * * * * *
851604 TTTTAAAAAGTAAAACTAGTAGTGTATATGTGTTGTTCTTGATTATGTTAAAGAAACATTGTGAA
1 TTTTAAAAAGTAAAACGAGTAGTGTATACGTTTTGTTCTTGATTATGTGAAACAAATAGTGTAAA
* * * * * ** * * *
851669 TAAGAGGCGTTAGTAGTCAAACAGTTAGGATAATTGTTTTTCAAGCAATAGACTCGGGTTTGATT
66 GAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGA--
* * *
851734 CTC-A-GCAAACGAAATCACGATTGTAAAATAATT-A-GGG----
129 CTCGATGCAAACGCAATTACGATAGTAAAA-AATTAAGGGGAAAA
* * * * * *
851771 ------AAAGTAAAATGAATAGTGTAAACCTTTTGTGCTTGATTATGTGAAACGAATAGTGTAAA
1 TTTTAAAAAGTAAAACGAGTAGTGTATACGTTTTGTTCTTGATTATGTGAAACAAATAGTGTAAA
* * ** * * * * * *
851830 GAAAATGTGTTTGTAGTCCAACGGTTAGGATACTTACCTTGCAAGCAATAGACTCAGGTTTGACC
66 GAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGA-C
* * * * *
851895 TCG--GCTAATGCAGTTATGATAGTAAAACATTAAGGGGAAAA
130 TCGATGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAA
* * * **
851936 TTTGT-AAAAGTAAAACCAGTAGTGTATACATGTTGTTCTTGATTATGTGAAATGAATAGTGTAA
1 TTT-TAAAAAGTAAAACGAGTAGTGTATACGTTTTGTTCTTGATTATGTGAAACAAATAGTGTAA
* * * *** * *
852000 AGAAGAGGCGTTTGTAGTCTAACGATTAGGATAATTTATTTCCAAGCAATAAACCCGGGTTCTAC
65 AGAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGAC
** ** * * **
852065 TC-CCG-AAA-AAAATTAGGATAGTAAATAATTAAGGGTCAAA
130 TCGATGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAA
* * * *
852105 TTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATTTGAAAACAATATAGTTTA
1 TTTTAAAAAGTAAAACGAGTAGTGTATACGTTTTGTTCTTGATTATGTG-AAACAA-ATAGTGTA
* ** ** * * * * *
852170 AATAAGAGGTGTTTGTAGTCCAACAATTATGATAATTTCCTTCCAAGGATTAGACCCAGGTTCGA
64 AAGAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGA
* * * * *
852235 CTC-CTGGTAAACACAATTACGATAGAAAAAAATTGAGGGG-AAA
129 CTCGAT-GCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAA
* * * * * * * * *
852278 TGTTGAAAAGTAAAATGAGTAGTGTATACATGTTATTCTTGATTATGTGAAAAAAATAATTTAAA
1 TTTTAAAAAGTAAAACGAGTAGTGTATACGTTTTGTTCTTGATTATGTGAAACAAATAGTGTAAA
* * ** **
852343 GAAGAGGCTTTTGTTGTCCAGTGGTTAGGATTAATTGCCTTCCAAGCAATAGACCCGGGTTTAAC
66 GAAGAGGCATTTGTAGTCCAACGGTTAGGA-TAATTGCCTTCCAAGCAATAGACCCGGGTTCGAC
* *
852408 TC-ATGGGAAACGCAATTACGATAGTAAAAAATTAA-GGGAAATT
130 TCGAT-GCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAA-A
* * * *
852451 TTTTGAAAAGTTAAACGAGTAGTGTATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAA
1 TTTTAAAAAGTAAAACGAGTAGTGTATACGTTTTGTTCTTGATTATGTGAAACAAATAGTGTAAA
852516 GAA
66 GAA
852519 TTACGTTAGA
Statistics
Matches: 3624, Mismatches: 893, Indels: 497
0.72 0.18 0.10
Matches are distributed among these distances:
155 59 0.02
156 16 0.00
157 1 0.00
158 51 0.01
159 4 0.00
160 21 0.01
161 98 0.03
162 1 0.00
163 1 0.00
164 2 0.00
165 4 0.00
166 18 0.00
168 6 0.00
169 222 0.06
170 239 0.07
171 592 0.16
172 785 0.22
173 598 0.17
174 458 0.13
175 53 0.01
176 34 0.01
177 9 0.00
178 4 0.00
180 6 0.00
181 10 0.00
182 3 0.00
183 12 0.00
184 15 0.00
185 11 0.00
186 19 0.01
187 14 0.00
188 10 0.00
189 8 0.00
190 8 0.00
191 5 0.00
193 5 0.00
194 3 0.00
195 7 0.00
196 10 0.00
197 12 0.00
198 14 0.00
199 16 0.00
200 17 0.00
201 25 0.01
202 5 0.00
203 2 0.00
205 1 0.00
206 4 0.00
207 5 0.00
208 11 0.00
209 3 0.00
210 1 0.00
214 1 0.00
215 76 0.02
216 9 0.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.30
Consensus pattern (172 bp):
TTTTAAAAAGTAAAACGAGTAGTGTATACGTTTTGTTCTTGATTATGTGAAACAAATAGTGTAAA
GAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACT
CGATGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAA
Found at i:848301 original size:158 final size:155
Alignment explanation
Indices: 847999--848302 Score: 392
Period size: 155 Copynumber: 1.9 Consensus size: 155
847989 AGAATAGGTA
* * * * **
847999 TTTGTAATCCACCGGTTAGGCTAATTACCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAA
1 TTTGTAATCCAACGGTTAGGATAAATACCTTCCAAGCAATAGACCCGAGTTCGACTCCCAACAAA
* * ** ** ** * *
848064 TGAATTACGATTTTAAAAAAGTAGGGAAAATTTTAAAAAGTTTAACGAGTAGTGTGTACGTGTTG
66 GGAATGAAAATAGTAAAAAAGTAGGGAAAATTTTAAAAAGTAAAACGAGTAGTGTATACATGTTG
848129 TTCTAGATTATGTGAATAAGAGGCG
131 TTCTAGATTATGTGAATAAGAGGCG
* * *
848154 TTTGTAGTCCAACGGTTAGGATAAATGCCTTCCAAGTAATAGACCCGAGTTCGACTCCCAACAAA
1 TTTGTAATCCAACGGTTAGGATAAATACCTTCCAAGCAATAGACCCGAGTTCGACTCCCAACAAA
*
848219 CGGAATGAAAATAGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAGTGTATACATG
66 -GGAATGAAAATAGTAAAAAAGT-A-GGGAAAATTTTAAAAAGTAAAACGAGTAGTGTATACATG
*
848284 TTGTTCTTGATTATGTGAA
128 TTGTTCTAGATTATGTGAA
848303 ACAAATAGTG
Statistics
Matches: 125, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
155 56 0.45
156 15 0.12
157 1 0.01
158 53 0.42
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (155 bp):
TTTGTAATCCAACGGTTAGGATAAATACCTTCCAAGCAATAGACCCGAGTTCGACTCCCAACAAA
GGAATGAAAATAGTAAAAAAGTAGGGAAAATTTTAAAAAGTAAAACGAGTAGTGTATACATGTTG
TTCTAGATTATGTGAATAAGAGGCG
Found at i:848437 original size:174 final size:170
Alignment explanation
Indices: 848146--849304 Score: 1074
Period size: 173 Copynumber: 6.7 Consensus size: 170
848136 TTATGTGAAT
* * * *
848146 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAAATGCCTTCCAAGTAATAGACCCGAGTTCGACTC
1 AAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCAG-GTTCGACTC
* * * * ** *
848211 CCAACAAACGGAATGAAAATAGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAGTG
65 CCGATAAACGCAATTACGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAGTG
*
848276 TATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
129 TATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * * * * * *
848318 ATGAGGCGTTTGTAGTCCAACGGTTAGGATAATTTCCCCTTCCAATCAATATACTCGGGTTCAAC
1 AAGAGGCATTTGTAGTCCAACGGTTAGGATAA-TT-GCCTTCCAAGCAATAGAC-CAGGTTCGAC
* * *
848383 TCCCGATAAACGCAATTACGATGGTAAAAAATTAAGGGTAAAATGTTGAAAAGTAAAATGAGTAG
63 TCCCGATAAACGCAATTACGATAGTAAAAAATTAAGGG-AAAATTTTGAAAAGTAAAACGAGTAG
* * * * * *
848448 TGTGTACGTATTGTTCTTGTTTGTGTGAAACAAATAACT-TAAAT
127 TGTATACGTGTTGTTCTTGATTATGTGAAACAAAT-AGTGTAAAG
* ** * * * * * * *
848492 AAGAGGCATTTTTAGTCCAACAATTAGGACAATTTCCTTCTAGGCAAAAGGCTCTGGTTCGACTC
1 AAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGAC-CAGGTTCGACTC
* * * * * *
848557 CCGGTAAACACAATTACGATTGTAAAAAAATTAAAGGGGAAATGTTT-AAAAGTAAAACGAATAA
65 CCGATAAACGCAATTACGATAGT-AAAAAATT-AAGGGAAAAT-TTTGAAAAGTAAAACGAGTAG
* * * *
848621 TGTATACGTGTTATTCGTGATTATGTGAAACAAATAGTTTTAAG
127 TGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * *
848665 AAGAGGCGTTTGTACTCCAACGGTTAGGATAATTGCCTTCTAAGCAATAGAACCAGGTTCGACTC
1 AAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAG-ACCAGGTTCGACTC
** * *
848730 GGGA-AAATGCAATTACGATAGTAAAAACACTTACCGGGAAAATTTTGAAAAGTAAAACGAGTAG
65 CCGATAAACGCAATTACGATAGTAAAAA-A-TTA-AGGGAAAATTTTGAAAAGTAAAACGAGTAG
* * * *
848794 TATATA-GTTGTTGTTCGTGATTATGTGAAATAAATAGTGCAAAG
127 TGTATACG-TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * *
848838 AAGAGGCATTTGTAGTCCAACGCTTAGGATAATTGCCTTCCAAGCAATAGACCTTGGTTCAACTC
1 AAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACC-AGGTTCGACTC
* * * * * * *
848903 CCG-TCAAATG-AATTAC-ATTAGCAAAAAATCAAAAGG-AAATTTTAAAAAGTAAAACCAGTTG
65 CCGAT-AAACGCAATTACGA-TAGTAAAAAAT-TAAGGGAAAATTTTGAAAAGTAAAACGAGTAG
* * * * *
848964 TGTATACGTGTTTTTATTCATTATTATGAAACAAATAGTGTAAAT
127 TGTATACGTGTTGTTCTTGATTA-TGTGAAACAAATAGTGTAAAG
* *
849009 AAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCAGGTTGGACTT
1 AAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGA-CCAGGTTCGACTC
* * * * *
849074 CCGACAAACGCAATTATGATAGTAGTAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACAAGAAA
65 CCGATAAACGCAATTACGATAGTA--AAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAG
* * * *
849139 TGTACATGTTTTGTTCTTGATTATGTGAAACAAATAGCGTAAAG
127 TGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * ** *** * * * * **
849183 AGGAGGTATTTGTCTTCCAACCACTAGGATAATTGCCTTCCAGGCAAGAAACCCGGGTTCGACAG
1 AAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGA-CCAGGTTCGACTC
** * * * * *
849248 GTGAAAAAGGCAATTTCGATAGTAAAAAAATAAGGGGACAATTTTGAAAAGTAAAAC
65 CCGATAAACGCAATTACGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAAC
849305 AATTATTTTT
Statistics
Matches: 802, Mismatches: 155, Indels: 60
0.79 0.15 0.06
Matches are distributed among these distances:
170 38 0.05
171 90 0.11
172 144 0.18
173 250 0.31
174 239 0.30
175 41 0.05
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (170 bp):
AAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCAGGTTCGACTCC
CGATAAACGCAATTACGATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTA
TACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
Found at i:849305 original size:172 final size:173
Alignment explanation
Indices: 848146--849306 Score: 617
Period size: 174 Copynumber: 6.7 Consensus size: 173
848136 TTATGTGAAT
* *** * * * *
848146 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAAATGCCTTCCAAGTAATAGACCC-GAGTTCGAC-
1 AAGAGGCATTTGTAGTCCAACCACTAGGATAATTGCCTTCCAAGCAAGAAACCCAG-GTTCGACA
* * * * ** * * * *
848209 TCCCAACAAACGGAATGAAAATAGTA-AAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAGTA
65 GCCGAA-AAACGCAATTATGATAGTAGAAAAAATAAGGGGAAAATTTTGAAAAGTAAAACAAGAA
* *
848273 GTGTATACATG--TTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
129 ATG--TACATGTTTTGTTCTTGATTATGTGAAACAAATAGCGTAAAG
* * *** * * * * * * *
848318 ATGAGGCGTTTGTAGTCCAACGGTTAGGATAATTTCCCCTTCCAATCAATATACTCGGGTTCAAC
1 AAGAGGCATTTGTAGTCCAACCACTAGGATAA-TT-GCCTTCCAAGCAAGAAACCCAGGTTCGAC
** * * * * * * ** *
848383 TCCCGATAAACGCAATTACGATGGTA-AAAAATTAAGGGTAAAATGTTGAAAAGTAAAATGAGTA
64 AGCCGAAAAACGCAATTATGATAGTAGAAAAAATAAGGGGAAAATTTTGAAAAGTAAAACAAGAA
* ** * * * * * * *
848447 GTGTGTACGTATTGTTCTTGTTTGTGTGAAACAAATAACTTAAAT
129 ATGTACATGTTTTGTTCTTGATTATGTGAAACAAATAGCGTAAAG
* * * * * * * * * * *
848492 AAGAGGCATTTTTAGTCCAACAATTAGGACAATTTCCTTCTAGGCAA-AAGGCTCTGGTTCGACT
1 AAGAGGCATTTGTAGTCCAACCACTAGGATAATTGCCTTCCAAGCAAGAA-ACCCAGGTTCGACA
* ** * * *
848556 CCCGGTAAACACAATTACGATTGTA-AAAAAATTAAAGGGG-AAATGTTT-AAAAGTAAAACGAA
65 GCCGAAAAACGCAATTATGATAGTAGAAAAAA-T-AAGGGGAAAAT-TTTGAAAAGTAAAAC-AA
* * * * * * ** *
848618 -TAATGTATACGTGTTATTCGTGATTATGTGAAACAAATAGTTTTAAG
126 GAAATGTACATGTTTTGTTCTTGATTATGTGAAACAAATAGCGTAAAG
* * *** * *
848665 AAGAGGCGTTTGTACTCCAACGGTTAGGATAATTGCCTTCTAAGCAATAGAA-CCAGGTTCGAC-
1 AAGAGGCATTTGTAGTCCAACCACTAGGATAATTGCCTTCCAAGCAAGA-AACCCAGGTTCGACA
* * * * * * ** *
848728 TCGGGAAAATGCAATTACGATAGTA-AAAACACTTACCGGGAAAATTTTGAAAAGTAAAACGAG-
65 GCCGAAAAACGCAATTATGATAGTAGAAAA-A-ATAAGGGGAAAATTTTGAAAAGTAAAACAAGA
* * * * * *
848791 TA-GTATATAGTTGTTGTTCGTGATTATGTGAAATAAATAGTGCAAAG
128 AATGTACAT-GTT-TTGTTCTTGATTATGTGAAACAAATAGCGTAAAG
* * * ** * *
848838 AAGAGGCATTTGTAGTCCAACGC-TTAGGATAATTGCCTTCCAAGCAATAGACCTTGGTTCAACT
1 AAGAGGCATTTGTAGTCCAAC-CACTAGGATAATTGCCTTCCAAGCAAGAAACCCAGGTTCGACA
* ** * * ** * * *
848902 CCCGTCAAATG-AATTA-CAT--TAGCAAAAAATCAAAAGG-AAATTTTAAAAAGTAAAACCAGT
65 GCCGAAAAACGCAATTATGATAGTAG-AAAAAAT-AAGGGGAAAATTTTGAAAAGTAAAACAAGA
** * * * * * * *
848962 TGTGTATACGTGTTT-TTATTCATTATTATGAAACAAATAGTGTAAAT
128 AATGTACATGT-TTTGTTCTTGATTA-TGTGAAACAAATAGCGTAAAG
*** * * * **
849009 AAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCAGGTTGGACTT
1 AAGAGGCATTTGTAGTCCAACCACTAGGATAATTGCCTTCCAAGCAAGAAACCCAGGTTCGACAG
* *
849074 CCGACAAACGCAATTATGATAGTAGTAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACAAGAAA
66 CCGAAAAACGCAATTATGATAGTAG-AAAAAATAAGGGGAAAATTTTGAAAAGTAAAACAAGAAA
849139 TGTACATGTTTTGTTCTTGATTATGTGAAACAAATAGCGTAAAG
130 TGTACATGTTTTGTTCTTGATTATGTGAAACAAATAGCGTAAAG
* * ** * *
849183 AGGAGGTATTTGTCTTCCAACCACTAGGATAATTGCCTTCCAGGCAAGAAACCCGGGTTCGACAG
1 AAGAGGCATTTGTAGTCCAACCACTAGGATAATTGCCTTCCAAGCAAGAAACCCAGGTTCGACAG
** * *
849248 GTGAAAAAGGCAATT-TCGATAGTA-AAAAAATAAGGGGACAATTTTGAAAAGTAAAACAA
66 CCGAAAAACGCAATTAT-GATAGTAGAAAAAATAAGGGGAAAATTTTGAAAAGTAAAACAA
849307 TTATTTTTTT
Statistics
Matches: 787, Mismatches: 164, Indels: 76
0.77 0.16 0.07
Matches are distributed among these distances:
170 30 0.04
171 98 0.12
172 166 0.21
173 208 0.26
174 236 0.30
175 49 0.06
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (173 bp):
AAGAGGCATTTGTAGTCCAACCACTAGGATAATTGCCTTCCAAGCAAGAAACCCAGGTTCGACAG
CCGAAAAACGCAATTATGATAGTAGAAAAAATAAGGGGAAAATTTTGAAAAGTAAAACAAGAAAT
GTACATGTTTTGTTCTTGATTATGTGAAACAAATAGCGTAAAG
Found at i:849613 original size:171 final size:171
Alignment explanation
Indices: 849379--852518 Score: 2106
Period size: 171 Copynumber: 18.1 Consensus size: 171
849369 TGATTACATG
* ** * * *
849379 AAACAAATAGTGTAAAGAATAGGTATTTGTAGTCAAACGGTTAGGCTAATTACCTTCCAAGCAAT
1 AAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAAT
* *
849444 AGACCCGGGATCAACTCTCGGCAAATGAATTACGATTA-TAAAAAATTAAGGGGAAAATTTTGAA
66 AGACCCGGGTTCGACTCTCGGCAAATGAATTACGA-TAGTAAAAAATTAAGGGGAAAATTTTGAA
** *** * * *
849508 AAGTAAATTGAGTAACATATATGTGTTTTTCTTGAATATGTA
130 AAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTA
* * * *
849550 AAAGAAATAGTGTGAATAAGAGGCGTTTGTAATCCAACGGTTAGGATAATTGCCTTCCAAGCAAT
1 AAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAAT
* * * * * * *
849615 AGACCCGGGTTCGACTCTCGGC-AATCGCAATGACAATTGTAAAATATTAAGGAGAAAACTTTAA
66 AGACCCGGGTTCGACTCTCGGCAAAT-G-AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGA
* * * *
849679 AAAGTAAAACGAGTAGTGTATACATGTTATTCTTGATTATTTG
129 AAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTA
* * * *
849722 AAACAAATAATGTAAA-AATGAGGCATTTGTAGTCCAACGGTTAGGATAATTACCTTCCAATCAA
1 AAACAAATAGTGTAAAGAA-GAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAA
* * * * * * ** * *
849786 TATACTCAGATTCGACTCCCGACAAACACAATTACGATGGTAAAAAATTAAGGGGAAAATGTTGA
65 TAGACCCGGGTTCGACTCTCGGCAAA-TGAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGA
* *
849851 AAAGTAAAACGAGTAGTGTATACGTGTTGTTATTGTTTATGTA
129 AAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTA
* * * * * * *
849894 AAACAAATAGCT-TAAATAAAAGGCATTTTTTCTTGTTTATGTGAAACAAATAGCTTA-AATAAA
1 AAACAAATAG-TGTAAAGAAGAGGC-----GT-TTG--TA-GT----CCAA-CGGTTAGGAT-AA
** * *** * *** * *** * *
849957 AGGCATTTTTAGTCCAACA-ATTAGGATAATTTCCT-TCCAAGCAAAAGACTCGGGTTTGACTCC
50 TTGCCTTCCAAG--CAATAGACCCGGGT--TCGACTCT-C-GGCAAA-----------TGA---A
* *
850020 TGGTAAACACAATTACGATAGTAAAAAACTTACGGGG-AAATGTTT-AAAAGTAAAATGAGTAGT
95 T--T--A--------CGATAGTAAAAAA-TTAAGGGGAAAAT-TTTGAAAAGTAAAACGAGTAGT
* *
850083 GTATACGTGTTATTCGTGATTATGTA
146 GTATACGTGTTGTTCTTGATTATGTA
* * ** *
850109 AAACAAATAGTTTAAAGAAGAGGTGTTTGTAGTCCAACGGTTTTGATAATTGCCTTCTAAGCAAT
1 AAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAAT
* * ** * ** *
850174 AGACTCAGGTTTAACTC-CGGGAAAAACACAATTACGATAGTAAAAAATCAA-GGGAAAATTTTG
66 AGACCCGGGTTCGACTCTC-GG-CAAA-TGAATTACGATAGTAAAAAATTAAGGGGAAAATTTTG
* * * *
850237 AAAAGTAATACGAGTAGTGTATAGGTGTTGTTCTTAATTATGTG
128 AAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTA
**
850281 AAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACAATTAGGATAATTGCCTTCCAAGCAAT
1 AAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAAT
* * * * * * ** *
850346 AGAACTGGGTTCGACTCTCGTCAAATGAATTAAGGTAATAAAAAATTAATAGG-AAATTTTTAGA
66 AGACCCGGGTTCGACTCTCGGCAAATGAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGA-A
* * *
850410 AAGTAAAACGAGTAGTGTATACGTGTTTTTCTTTATTATGTG
130 AAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTA
* * * * *
850452 AAACAAATAGTGTAAATAAGAGGCGTATGTATTCCAAGGGTTAGGATAATTGCCTTCCAAGCGAT
1 AAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAAT
* * ** ** ** *
850517 AGATCTGGGTTCGACTGC-CGATAAACACAATCGCGATCGTAAAAAATTAAGGGGAAAATTTTGA
66 AGACCCGGGTTCGACT-CTCGGCAAA-TGAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGA
* * * *
850581 AAAGTAAAACAAGTAGTGTATTAC---ATGTTCTTGCTTACCTGAAAA
129 AAAGTAAAACGAGTAGTGTA-TACGTGTTGTTCTTGATTA--TG--TA
* * * * * * *** *
850626 AAATAAACAGTGTAAAGATGACGCGTTCGTAGTCCTATATTTAGGATAATTGCCTCTTCCAATCA
1 AAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTG-C-CTTCCAAGCA
* * * * *
850691 ATAGACTCGGGTTCG--TAGTC-G--TATGTAATTACGATAGTAAACAATTAAGGGGAAAATGTT
64 ATAGACCCGGGTTCGACT-CTCGGCAAATG-AATTACGATAGTAAAAAATTAAGGGGAAAATTTT
* * *
850751 GAAAAGTAAAATGAGTATTGTATACGTGTTGTTCTTGATTATGTG
127 GAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTA
* * * **
850796 AAACAAATAGCT-TAAATAAGAGGCATTT-TTGTCCAACAATTAGG-TAATTTG-CTTCCAAGCA
1 AAACAAATAG-TGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAA-TTGCCTTCCAAGCA
* * ** ** * ** * *
850857 AAAGGCGTGGAATCGACTCT-GGTAAACACAATTACGATAGTAAAAAATTATGGGGGAAATTTTG
64 ATAGACCCGGGTTCGACTCTCGGCAAA-TGAATTACGATAGTAAAAAATTAAGGGGAAAATTTTG
* * *
850921 AAAAGTAAAACGAGTAGTGTATACATTTTATTCTTGATTATGTGA
128 AAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGT-A
* * * * *
850966 AAA-AAATAGTTTAAAGAAGAGGTGTTTGTAGTCCAGCGGCTAGGATTAATTGCCTTCCAAACAA
1 AAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGA-TAATTGCCTTCCAAGCAA
* * ** * * * * *
851030 TAGACCCAGGTTCAACTC-CTGGCAAACACAATTACAATAGTAAACAATTAAGGAGAAATTTTTT
65 TAGACCCGGGTTCGACTCTC-GGCAAA-TGAATTACGATAGTAAAAAATTAAGGGGAAAATTTTG
* * *
851094 AAAAGTAAAATGAGTAGTGTATAGGTGTTGTTCTTGATTATGTG
128 AAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTA
* * * * * *
851138 AACCAAATAGTGTAAGGAAGAGGCATTTGTAGTCCAACTGTTTGGATAAAAATT-CCTTCCAAAC
1 AAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT---AATTGCCTTCCAAGC
* * * * ** * * *
851202 AGTAGACCCGAGTTCGACT-TGGGGAAAATGCAATTTTGATAGTAAAGAATTAAGTGGTAAATTT
63 AATAGACCCGGGTTCGACTCT-CGGCAAATG-AATTACGATAGTAAAAAATTAAGGGGAAAATTT
* * *
851266 TGAAAAGTAAAACAAGTAGTGTATACGTGTTGTTCTTGATTGTGTG
126 TGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTA
* * ** * * * *
851312 AAACAAATAGTTTAAAGAAGAGGTGTTTGTAGTCCAACATTTTGGATAATTCCCTTTCATGCAAT
1 AAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAAT
* * * ** * *
851377 GGACTCGGGTTTGACTCTCGGTTAATGTAATTATGATATTAAAAAA-TAAGGGGAAAATTTTGAA
66 AGACCCGGGTTCGACTCTCGGCAAATG-AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAA
* *
851441 AAGTAAAACGAGTAG-GTTATACGTGTTTTTCTTGATTATGTG
130 AAGTAAAACGAGTAGTG-TATACGTGTTGTTCTTGATTATGTA
* * * * * * * *
851483 AAAGAAACAGTGTGAATAAGAGGTGTTTGTAGTCCAATGGTTAGAATAATTGTCTTCCAAGCAAT
1 AAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAAT
* * * * * * * *
851548 TGACCCGGGTTCGACTCCCGACAAACGCAATGACAATTGT-AAAAATTAAGGGG-AAATTTTAAA
66 AGACCCGGGTTCGACTCTCGGCAAATG-AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAA
* * *
851611 AAGTAAAACTAGTAGTGTATATGTGTTGTTCTTGATTATGTT
130 AAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTA
* * * * * * * * ** *
851653 AAAGAAACATTGTGAATAAGAGGCGTTAGTAGTCAAACAGTTAGGATAATTGTTTTTCAAGCAAT
1 AAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAAT
* * * * * * *
851718 AGACTCGGGTTTGATTCTCAGCAAACGAAATCACGATTGTAAAATAATT-A--GG--------G-
66 AGACCCGGGTTCGACTCTCGGCAAATG-AATTACGATAGTAAAA-AATTAAGGGGAAAATTTTGA
* * * * * * *
851771 AAAGTAAAATGAATAGTGTAAACCTTTTGTGCTTGATTATGTG
129 AAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTA
* * * * * * *
851814 AAACGAATAGTGTAAAGAAAATGTGTTTGTAGTCCAACGGTTAGGATACTTACCTTGCAAGCAAT
1 AAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAAT
* * * * * * *
851879 AGACTCAGGTTTGAC-CTCGGCTAATGCAGTTATGATAGTAAAACATTAAGGGGAAAA-TTTGTA
66 AGACCCGGGTTCGACTCTCGGCAAATG-AATTACGATAGTAAAAAATTAAGGGGAAAATTTTG-A
* * *
851942 AAAGTAAAACCAGTAGTGTATACATGTTGTTCTTGATTATGTG
129 AAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTA
** * * ***
851985 AAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCTAACGATTAGGATAATTTATTTCCAAGCAAT
1 AAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAAT
* * * ** * * **
852050 AAACCCGGGTTCTACTC-CCG-AAAAAAATTAGGATAGTAAATAATTAAGGGTCAAATTTTGAAA
66 AGACCCGGGTTCGACTCTCGGCAAATGAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAA
*
852113 AGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATTTGA
131 AGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGT-A
* * * ** * * * *
852155 AAACAATATAGTTTAAATAAGAGGTGTTTGTAGTCCAACAATTATGATAATTTCCTTCCAAGGAT
1 AAACAA-ATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAA
* * ** * * *
852220 TAGACCCAGGTTCGACTC-CTGGTAAACACAATTACGATAGAAAAAAATTGAGGGG-AAATGTTG
65 TAGACCCGGGTTCGACTCTC-GGCAAA-TGAATTACGATAGTAAAAAATTAAGGGGAAAATTTTG
* * *
852283 AAAAGTAAAATGAGTAGTGTATACATGTTATTCTTGATTATGTGA
128 AAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGT-A
* * * * **
852328 AAA-AAATAATTTAAAGAAGAGGCTTTTGTTGTCCAGTGGTTAGGATTAATTGCCTTCCAAGCAA
1 AAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGA-TAATTGCCTTCCAAGCAA
** * * *
852392 TAGACCCGGGTTTAACTCAT-GGGAAACGCAATTACGATAGTAAAAAATTAA-GGGAAATTTTTT
65 TAGACCCGGGTTCGACTC-TCGGCAAATG-AATTACGATAGTAAAAAATTAAGGGGAAA-ATTTT
* * *
852455 GAAAAGTTAAACGAGTAGTGTATAGGTGTTGTTCTTGATTATGTG
127 GAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTA
852500 AAACAAATAGTGTAAAGAA
1 AAACAAATAGTGTAAAGAA
852519 TTACGTTAGA
Statistics
Matches: 2304, Mismatches: 528, Indels: 272
0.74 0.17 0.09
Matches are distributed among these distances:
159 3 0.00
160 21 0.01
161 95 0.04
162 2 0.00
166 18 0.01
167 2 0.00
168 5 0.00
169 171 0.07
170 218 0.09
171 559 0.24
172 552 0.24
173 248 0.11
174 210 0.09
175 6 0.00
176 20 0.01
177 1 0.00
178 3 0.00
180 2 0.00
181 3 0.00
183 1 0.00
185 6 0.00
186 10 0.00
187 5 0.00
188 5 0.00
189 4 0.00
190 4 0.00
197 2 0.00
198 7 0.00
199 4 0.00
200 5 0.00
201 12 0.01
202 5 0.00
203 1 0.00
205 1 0.00
206 2 0.00
207 3 0.00
209 3 0.00
210 1 0.00
214 1 0.00
215 74 0.03
216 9 0.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (171 bp):
AAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAAT
AGACCCGGGTTCGACTCTCGGCAAATGAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAA
AGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTA
Found at i:849944 original size:43 final size:43
Alignment explanation
Indices: 849883--849966 Score: 159
Period size: 43 Copynumber: 2.0 Consensus size: 43
849873 CGTGTTGTTA
849883 TTGTTTATGTAAAACAAATAGCTTAAATAAAAGGCATTTTTTC
1 TTGTTTATGTAAAACAAATAGCTTAAATAAAAGGCATTTTTTC
*
849926 TTGTTTATGTGAAACAAATAGCTTAAATAAAAGGCATTTTT
1 TTGTTTATGTAAAACAAATAGCTTAAATAAAAGGCATTTTT
849967 AGTCCAACAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.39, C:0.08, G:0.13, T:0.39
Consensus pattern (43 bp):
TTGTTTATGTAAAACAAATAGCTTAAATAAAAGGCATTTTTTC
Found at i:850091 original size:215 final size:215
Alignment explanation
Indices: 849708--850124 Score: 552
Period size: 215 Copynumber: 1.9 Consensus size: 215
849698 ATACATGTTA
* * **
849708 TTCTTGATTATTTGAAACAAATAATGTAAAAATGAGGCATTTGTAGTCCAACGGTTAGGATAATT
1 TTCTTGATTATGTGAAACAAATAATGTAAAAATAAGGCATTTGTAGTCCAACAATTAGGATAATT
* * * *
849773 ACCTTCCAATCAATATACTCAGATTCGACTCCCGACAAACACAATTACGATGGTAAAAAATTAAG
66 ACCTTCCAAGCAAAAGACTCAGATTCGACTCCCGACAAACACAATTACGATAGTAAAAAATTAAG
* * *
849838 GGGAAAATGTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTATTGTTTATGTAAAACAAATA
131 GGGAAAATGTTGAAAAGTAAAACGAGTAGTGTATACGTGTTATTAGTGATTATGTAAAACAAATA
849903 GCTTAAATAAAAGGCATTTT
196 GCTTAAATAAAAGGCATTTT
* * *
849923 TTCTTGTTTATGTGAAACAAATAGCT-TAAATAA-AAGGCATTTTTAGTCCAACAATTAGGATAA
1 TTCTTGATTATGTGAAACAAATA-ATGTAAA-AATAAGGCATTTGTAGTCCAACAATTAGGATAA
* * * * * **
849986 TTTCCTTCCAAGCAAAAGACTCGGGTTTGACTCCTGGTAAACACAATTACGATAGTAAAAAACTT
64 TTACCTTCCAAGCAAAAGACTCAGATTCGACTCCCGACAAACACAATTACGATAGTAAAAAA-TT
* * * *
850051 ACGGGG-AAATGTTTAAAAGTAAAATGAGTAGTGTATACGTGTTATTCGTGATTATGTAAAACAA
128 AAGGGGAAAATGTTGAAAAGTAAAACGAGTAGTGTATACGTGTTATTAGTGATTATGTAAAACAA
*
850115 ATAGTTTAAA
193 ATAGCTTAAA
850125 GAAGAGGTGT
Statistics
Matches: 173, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
215 163 0.94
216 10 0.06
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.31
Consensus pattern (215 bp):
TTCTTGATTATGTGAAACAAATAATGTAAAAATAAGGCATTTGTAGTCCAACAATTAGGATAATT
ACCTTCCAAGCAAAAGACTCAGATTCGACTCCCGACAAACACAATTACGATAGTAAAAAATTAAG
GGGAAAATGTTGAAAAGTAAAACGAGTAGTGTATACGTGTTATTAGTGATTATGTAAAACAAATA
GCTTAAATAAAAGGCATTTT
Found at i:850279 original size:172 final size:170
Alignment explanation
Indices: 849923--852518 Score: 2158
Period size: 171 Copynumber: 15.2 Consensus size: 170
849913 AAGGCATTTT
* * * * * **
849923 TTCTTGTTTATGTGAAACAAATAGCT-TAAATAAAAGGCATTTTTAGTCCAACAATTAGGATAAT
1 TTCTTGATTATGTGAAACAAATAG-TGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * *
849987 TTCCTTCCAAGCAAAAGACTCGGGTTTGACTCCTGGTAAACACAATTACGATAGTAAAAAACTTA
65 TGCCTTCCAAGCAATAGACTCGGGTTTGACTCC-GGCAAACACAATTACGATAGTAAAAAA-TTA
* * * *
850052 CGGGGAAATGTTT-AAAAGTAAAATGAGTAGTGTATACGTGTTA
128 AGGGAAAAT-TTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * **
850095 TTCGTGATTATGTAAAACAAATAGTTTAAAGAAGAGGTGTTTGTAGTCCAACGGTTTTGATAATT
1 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * * *
850160 GCCTTCTAAGCAATAGACTCAGGTTTAACTCCGGGAAAAACACAATTACGATAGTAAAAAATCAA
66 GCCTTCCAAGCAATAGACTCGGGTTTGACTCC-GG-CAAACACAATTACGATAGTAAAAAATTAA
* *
850225 GGGAAAATTTTGAAAAGTAATACGAGTAGTGTATAGGTGTTG
129 GGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* **
850267 TTCTTAATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACAATTAGGATAATT
1 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * ** * * *
850332 GCCTTCCAAGCAATAGAACT-GGGTTCGACTCTCGTCAAA-TGAATTAAGGTAATAAAAAATTAA
66 GCCTTCCAAGCAATAG-ACTCGGGTTTGACTC-CGGCAAACACAATTACGATAGTAAAAAATTAA
* * *
850395 TAGG-AAATTTTTAGAAAGTAAAACGAGTAGTGTATACGTGTTT
129 -GGGAAAATTTTGA-AAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * *
850438 TTCTTTATTATGTGAAACAAATAGTGTAAATAAGAGGCGTATGTATTCCAAGGGTTAGGATAATT
1 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * ** ** *
850503 GCCTTCCAAGCGATAGA-TCTGGGTTCGACTGCCGATAAACACAATCGCGATCGTAAAAAATTAA
66 GCCTTCCAAGCAATAGACTC-GGGTTTGACT-CCGGCAAACACAATTACGATAGTAAAAAATTAA
* *
850567 GGGGAAAATTTTGAAAAGTAAAACAAGTAGTGTATTAC---ATG
129 -GGGAAAATTTTGAAAAGTAAAACGAGTAGTGTA-TACGTGTTG
* ** * * * * * ***
850608 TTCTTGCTTACCTGAAAAAAATAAACAGTGTAAAGATGACGCGTTCGTAGTCCTATATTTAGGAT
1 TTCTTGATTATGTGAAACAAAT----AGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT
* * * * *** *
850673 AATTGCCTCTTCCAATCAATAGACTCGGGTTCGTAGT-C-G--TATGTAATTACGATAGTAAACA
62 AATTG-C-CTTCCAAGCAATAGACTCGGGTTTG-ACTCCGGCAAACACAATTACGATAGTAAAAA
* * *
850734 ATTAAGGGGAAAATGTTGAAAAGTAAAATGAGTATTGTATACGTGTTG
124 ATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * **
850782 TTCTTGATTATGTGAAACAAATAGCT-TAAATAAGAGGCATTT-TTGTCCAACAATTAGG-TAAT
1 TTCTTGATTATGTGAAACAAATAG-TGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAA-
* * ** * * *
850844 TTG-CTTCCAAGCAAAAGGCGT-GGAATCGACTCTGGTAAACACAATTACGATAGTAAAAAATTA
64 TTGCCTTCCAAGCAATAGAC-TCGGGTTTGACTCCGGCAAACACAATTACGATAGTAAAAAATTA
* * * * *
850907 TGGGGGAAATTTTGAAAAGTAAAACGAGTAGTGTATACATTTTA
128 -AGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * *
850951 TTCTTGATTATGTGAAAAAAATAGTTTAAAGAAGAGGTGTTTGTAGTCCAGCGGCTAGGATTAAT
1 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGA-TAAT
* * * ** * *
851016 TGCCTTCCAAACAATAGACCCAGGTTCAACTCCTGGCAAACACAATTACAATAGTAAACAATTAA
65 TGCCTTCCAAGCAATAGACTCGGGTTTGACTCC-GGCAAACACAATTACGATAGTAAAAAATTAA
* * * *
851081 GGAGAAATTTTTTAAAAGTAAAATGAGTAGTGTATAGGTGTTG
129 GG-GAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * *
851124 TTCTTGATTATGTGAACCAAATAGTGTAAGGAAGAGGCATTTGTAGTCCAACTGTTTGGATAAAA
1 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT---A
* * * * * ** * ** *
851189 ATT-CCTTCCAAACAGTAGACCCGAGTTCGACTTGGGGAAA-ATGCAATTTTGATAGTAAAGAAT
63 ATTGCCTTCCAAGCAATAGACTCGGGTTTGACTCCGGCAAACA--CAATTACGATAGTAAAAAAT
* *
851252 TAAGTGGTAAATTTTGAAAAGTAAAACAAGTAGTGTATACGTGTTG
126 TAAG-GGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * ** *
851298 TTCTTGATTGTGTGAAACAAATAGTTTAAAGAAGAGGTGTTTGTAGTCCAACATTTTGGATAATT
1 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * * ** *** * *
851363 CCCTTTCATGCAATGGACTCGGGTTTGACTCTCGGTTAATGTAATTATGATATTAAAAAA-TAAG
66 GCCTTCCAAGCAATAGACTCGGGTTTGACTC-CGGCAAACACAATTACGATAGTAAAAAATTAA-
*
851427 GGGAAAATTTTGAAAAGTAAAACGAGTAG-GTTATACGTGTTT
129 GGGAAAATTTTGAAAAGTAAAACGAGTAGTG-TATACGTGTTG
* * * * * * *
851469 TTCTTGATTATGTGAAAGAAACAGTGTGAATAAGAGGTGTTTGTAGTCCAATGGTTAGAATAATT
1 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * * * * * * *
851534 GTCTTCCAAGCAATTGACCCGGGTTCGACTCCCGACAAACGCAATGACAATTGT-AAAAATTAAG
66 GCCTTCCAAGCAATAGACTCGGGTTTGACT-CCGGCAAACACAATTACGATAGTAAAAAATTAAG
* * * *
851598 GGGAAATTTTAAAAAGTAAAACTAGTAGTGTATATGTGTTG
130 GGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * * * * * *
851639 TTCTTGATTATGTTAAAGAAACATTGTGAATAAGAGGCGTTAGTAGTCAAACAGTTAGGATAATT
1 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
** * * * * *
851704 GTTTTTCAAGCAATAGACTCGGGTTTGATTCTCAGCAAACGA-AATCACGATTGTAAAATAATT-
66 GCCTTCCAAGCAATAGACTCGGGTTTGACTC-CGGCAAAC-ACAATTACGATAGTAAAA-AATTA
* * * * *
851767 A-GG--------G-AAAGTAAAATGAATAGTGTAAACCTTTTG
128 AGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * * *
851800 TGCTTGATTATGTGAAACGAATAGTGTAAAGAAAATGTGTTTGTAGTCCAACGGTTAGGATACTT
1 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * * ** * * *
851865 ACCTTGCAAGCAATAGACTCAGGTTTGAC-CTCGGCTAATGCAGTTATGATAGTAAAACATTAAG
66 GCCTTCCAAGCAATAGACTCGGGTTTGACTC-CGGCAAACACAATTACGATAGTAAAAAATTAA-
* *
851929 GGGAAAA-TTTGTAAAAGTAAAACCAGTAGTGTATACATGTTG
129 GGGAAAATTTTG-AAAAGTAAAACGAGTAGTGTATACGTGTTG
** * *
851971 TTCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCTAACGATTAGGATAATT
1 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
*** * * * * * *
852036 TATTTCCAAGCAATAAACCCGGGTTCT-ACTCCCG-AAA-AAAATTAGGATAGTAAATAATTAAG
66 GCCTTCCAAGCAATAGACTCGGGTT-TGACTCCGGCAAACACAATTACGATAGTAAAAAATTAAG
*
852098 GGTCAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
130 GG-AAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * ** *
852140 TTCTTGATTATTTGAAAACAATATAGTTTAAATAAGAGGTGTTTGTAGTCCAACAATTATGATAA
1 TTCTTGATTATGTG-AAACAA-ATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAA
* * * * * * * * *
852205 TTTCCTTCCAAGGATTAGACCCAGGTTCGACTCCTGGTAAACACAATTACGATAGAAAAAAATTG
64 TTGCCTTCCAAGCAATAGACTCGGGTTTGACTCC-GGCAAACACAATTACGATAGTAAAAAATTA
* * * * *
852270 AGGGGAAATGTTGAAAAGTAAAATGAGTAGTGTATACATGTTA
128 AGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * * **
852313 TTCTTGATTATGTGAAAAAAATAATTTAAAGAAGAGGCTTTTGTTGTCCAGTGGTTAGGATTAAT
1 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGA-TAAT
* * * * *
852378 TGCCTTCCAAGCAATAGACCCGGGTTTAACTCATGGGAAACGCAATTACGATAGTAAAAAATTAA
65 TGCCTTCCAAGCAATAGACTCGGGTTTGACTC-CGGCAAACACAATTACGATAGTAAAAAATTAA
* * *
852443 GGGAAATTTTTTGAAAAGTTAAACGAGTAGTGTATAGGTGTTG
129 GGGAAA-ATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
852486 TTCTTGATTATGTGAAACAAATAGTGTAAAGAA
1 TTCTTGATTATGTGAAACAAATAGTGTAAAGAA
852519 TTACGTTAGA
Statistics
Matches: 1931, Mismatches: 409, Indels: 167
0.77 0.16 0.07
Matches are distributed among these distances:
159 3 0.00
160 20 0.01
161 95 0.05
162 2 0.00
165 2 0.00
166 18 0.01
167 2 0.00
168 7 0.00
169 172 0.09
170 219 0.11
171 465 0.24
172 421 0.22
173 266 0.14
174 208 0.11
175 7 0.00
176 20 0.01
177 4 0.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.31
Consensus pattern (170 bp):
TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
GCCTTCCAAGCAATAGACTCGGGTTTGACTCCGGCAAACACAATTACGATAGTAAAAAATTAAGG
GAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
Found at i:852501 original size:515 final size:512
Alignment explanation
Indices: 849923--854944 Score: 2348
Period size: 515 Copynumber: 9.6 Consensus size: 512
849913 AAGGCATTTT
* * * * * **
849923 TTCTTGTTTATGTGAAACAAATAGCT-TAAATAAAAGGCATTTTTAGTCCAACAATTAGGATAAT
1 TTCTTGATTATGTGAAACAAATAG-TGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * *
849987 TTCCTTCCAAGCAAAAGACTCGGGTTTGACTCCTGGTAAACACAATTACGATAGTAAAAAACTTA
65 TTCCTTCCAAGCAATAGACCCGGGTTCGACTCC-CG-AAA-ACAATTACGATAGTAAAAAA-TTA
* * * *
850052 CGGGGAAATGTTT-AAAAGTAAAATGAGTAGTGTATACGTGTTATTCGTGATTATGT-AAAACAA
126 AGGGGAAAT-TTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAAACAA
* * * * * *
850115 ATAGTTTAAAGAAGAGGTGTTTGTAGTCCAACGGTTTTGATAATTGCCTTCTAAGCAATAGACTC
190 ATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACAGTTATGATAATTTCCTTCCAAGCAATAGACTC
** * * *
850180 AGGTTTAACTCCGGGAAAAACACAATTACGATAGTAAAAAATCAAGGGAAAATTTTGAAAAGTAA
255 AGGTTCGACTCCGGG-AAAACACAATTACGATAGTAAAAAATTAAGGGGAAATGTTGAAAAGTAA
* * * * * *
850245 TACGAGTAGTGTATAGGTGTTGTTCTTAATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTG
319 AATGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTTTAAAGAAGAGGCTTTTG
* * * *
850310 TAGTCCAACAATTAGGATAATTGCCTTCCAAGCAATAGAACTGGGTTCGACTCTCGTCAAATG-A
384 TAGTCCAACAATTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTTGACTCTCGGCAAATGCA
* * * ** *
850374 ATTAAGGTAATAAAAAATTAATAGGAAATTTTT-AGAAAGTAAAACGAGTAGTGTATACGTGTTT
449 ATTACGATAGTAAAAAATTAAGGGGAAATTTTTGA-AAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * *
850438 TTCTTTATTATGTGAAACAAATAGTGTAAATAAGAGGCGTATGTATTCCAAGGGTTAGGATAATT
1 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * * * ** *
850503 GCCTTCCAAGCGATAGATCTGGGTTCGACTGCCGATAAACACAATCGCGATCGTAAAAAATTAAG
66 TCCTTCCAAGCAATAGACCCGGGTTCGACTCCCG--AAA-ACAATTACGATAGTAAAAAATTAAG
* * * **
850568 GGGAAAATTTTGAAAAGTAAAACAAGTAGTGTATTAC---ATGTTCTTGCTTACCTGAAAA-AAA
128 GGG-AAATTTTGAAAAGTAAAACGAGTAGTGTA-TACGTGTTGTTCTTGATTATGTGAAAACAAA
* * * * * * * * *
850629 TAAACAGTGTAAAGATGACGCGTTCGTAGTCCTATATTTAGGATAATTGCCTCTTCCAATCAATA
191 T----AGTGTAAAGAAGAGGCGTTTGTAGTCCAACAGTTATGATAATT-TC-CTTCCAAGCAATA
* * * *** *
850694 GACTCGGGTTCGTAGT-C--G--TATGTAATTACGATAGTAAACAATTAAGGGGAAAATGTTGAA
250 GACTCAGGTTCG-ACTCCGGGAAAACACAATTACGATAGTAAAAAATTAAGGGG-AAATGTTGAA
* * *
850754 AAGTAAAATGAGTATTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGCTTAAATAAGAGG
313 AAGTAAAATGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTTTAAAGAAGAGG
* * ** ** *
850819 CATTTT-T-GTCCAACAATTAGG-TAATTTG-CTTCCAAGCAAAAGGCGTGGAATCGACTCT-GG
378 C-TTTTGTAGTCCAACAATTAGGATAA-TTGCCTTCCAAGCAATAGACCCGGGTTTGACTCTCGG
* ** *
850879 TAAACACAATTACGATAGTAAAAAATTATGGGGGAAA-TTTTGAAAAGTAAAACGAGTAGTGTAT
441 CAAATGCAATTACGATAGTAAAAAATTA-AGGGGAAATTTTTGAAAAGTAAAACGAGTAGTGTAT
* * *
850943 ACATTTTA
505 ACGTGTTG
* * * * *
850951 TTCTTGATTATGTGAAAAAAATAGTTTAAAGAAGAGGTGTTTGTAGTCCAGCGGCTAGGATTAAT
1 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGA-TAAT
* * * * * * *
851016 TGCCTTCCAAACAATAGACCCAGGTTCAACTCCTGGCAAACACAATTACAATAGTAAACAATTAA
65 TTCCTTCCAAGCAATAGACCCGGGTTCGACTCC-CG-AAA-ACAATTACGATAGTAAAAAATTAA
* * * * *
851081 GGAGAAATTTTTTAAAAGTAAAATGAGTAGTGTATAGGTGTTGTTCTTGATTATGTG-AACCAAA
127 GGGGAAA-TTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAAACAAA
* * * * * *
851145 TAGTGTAAGGAAGAGGCATTTGTAGTCCAACTGTT-TGGATAAAAATTCCTTCCAAACAGTAGAC
191 TAGTGTAAAGAAGAGGCGTTTGTAGTCCAACAGTTAT-GAT--AATTTCCTTCCAAGCAATAGAC
* ** ** ** * * *
851209 -CCGAGTTCGACTTGGGGAAAATGCAATTTTGATAGTAAAGAATTAAGTGGTAAATTTTGAAAAG
253 TCAG-GTTCGACTCCGGGAAAACACAATTACGATAGTAAAAAATTAAG-GGGAAATGTTGAAAAG
** *
851273 TAAAACAAGTAGTGTATACGTGTTGTTCTTGATTGTGTGAAACAAATAGTTTAAAGAAGAGG-TG
316 TAAAATGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTTTAAAGAAGAGGCT-
* * * * * * * **
851337 TTTGTAGTCCAACATTTTGGATAATTCCCTTTCATGCAATGGACTCGGGTTTGACTCTCGGTTAA
380 TTTGTAGTCCAACAATTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTTGACTCTCGGCAAA
* * * *
851402 TGTAATTATGATATTAAAAAA-TAAGGGGAAAATTTTGAAAAGTAAAACGAGTAG-GTTATACGT
445 TGCAATTACGATAGTAAAAAATTAAGGGGAAATTTTTGAAAAGTAAAACGAGTAGTG-TATACGT
*
851465 GTTT
509 GTTG
* * * * * * *
851469 TTCTTGATTATGTGAAAGAAACAGTGTGAATAAGAGGTGTTTGTAGTCCAATGGTTAGAATAATT
1 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * *
851534 GT-CTTCCAAGCAATTGACCCGGGTTCGACTCCCGACAAACGCAATGACAATTGT-AAAAATTAA
66 -TCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGA-AAA--CAATTACGATAGTAAAAAATTAA
* * * * * *
851597 GGGGAAATTTTAAAAAGTAAAACTAGTAGTGTATATGTGTTGTTCTTGATTATGT-TAAAGAAAC
127 GGGGAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAAACAAAT
* * * * * * * * *
851661 ATTGTGAATAAGAGGCGTTAGTAGTCAAACAGTTAGGATAATTGT-TTTTCAAGCAATAGACTCG
192 AGTGTAAAGAAGAGGCGTTTGTAGTCCAACAGTTATGATAATT-TCCTTCCAAGCAATAGACTCA
* * * * * *
851725 GGTTTGATTCTC-AGCAAACGA-AATCACGATTGTAAAATAATT-A---G----G--G-AAAGTA
256 GGTTCGACTC-CGGGAAAAC-ACAATTACGATAGTAAAA-AATTAAGGGGAAATGTTGAAAAGTA
* * * * * * * * *
851777 AAATGAATAGTGTAAACCTTTTGTGCTTGATTATGTGAAACGAATAGTGTAAAGAAAATG-TGTT
318 AAATGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTTTAAAGAAGAGGCT-TT
** * * * * * *
851841 TGTAGTCCAACGGTTAGGATACTTACCTTGCAAGCAATAGACTCAGGTTTGAC-CTCGGCTAATG
382 TGTAGTCCAACAATTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTTGACTCTCGGCAAATG
* * * * * *
851905 CAGTTATGATAGTAAAACATTAAGGGGAAA-ATTTGTAAAAGTAAAACCAGTAGTGTATACATGT
447 CAATTACGATAGTAAAAAATTAAGGGGAAATTTTTG-AAAAGTAAAACGAGTAGTGTATACGTGT
851969 TG
511 TG
** * *
851971 TTCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCTAACGATTAGGATAATT
1 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
** * * * * *
852036 TATTTCCAAGCAATAAACCCGGGTTCTACTCCCGAAAAAAATTAGGATAGTAAATAATTAAGGGT
66 TCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGAAAACAATTACGATAGTAAAAAATTAAGGG-
* *
852101 CAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATTTGAAAACAATATAG
130 GAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAAACAA-ATAG
* * * * * * *
852166 TTTAAATAAGAGGTGTTTGTAGTCCAACAATTATGATAATTTCCTTCCAAGGATTAGACCCAGGT
194 TGTAAAGAAGAGGCGTTTGTAGTCCAACAGTTATGATAATTTCCTTCCAAGCAATAGACTCAGGT
* * * *
852231 TCGACTCCTGGTAAACACAATTACGATAGAAAAAAATTGAGGGGAAATGTTGAAAAGTAAAATGA
259 TCGACTCCGGGAAAACACAATTACGATAGTAAAAAATTAAGGGGAAATGTTGAAAAGTAAAATGA
* * * * *
852296 GTAGTGTATACATGTTATTCTTGATTATGTGAAAAAAATAATTTAAAGAAGAGGCTTTTGTTGTC
324 GTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTTTAAAGAAGAGGCTTTTGTAGTC
**** * * *
852361 CAGTGGTTAGGATTAATTGCCTTCCAAGCAATAGACCCGGGTTTAACTCAT-GGGAAACGCAATT
389 CAACAATTAGGA-TAATTGCCTTCCAAGCAATAGACCCGGGTTTGACTC-TCGGCAAATGCAATT
* *
852425 ACGATAGTAAAAAATTAA-GGGAAATTTTTTGAAAAGTTAAACGAGTAGTGTATAGGTGTTG
452 ACGATAGTAAAAAATTAAGGGGAAA-TTTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * *** *****
852486 TTCTTGATTATGTGAAACAAATAGTGTAAAGAATTA--CGTTAG-A-AAAAATTAAAAGGA-AAT
1 TTCTTGATTATGTGAAACAAATAGTGTAAAGAA-GAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * ** * ** ***** ** *
852546 TT--TT--AA-AAAGTAAACGAGTAGTGTATACATGTTTTTATTCATTATGTGAAACAAATAGT-
65 TTCCTTCCAAGCAA-TAGACCCG-GGT-TCGAC-T-CCCGAAAACA--AT-T---AC-GATAGTA
** * ** * ** * * * *
852605 GTAAA-TAAGAGG--CGTTTG--TAGTCCAACG-GTTTGGGTAATTGCCTTCCAAGCTATAGATT
118 AAAAATTAAGGGGAAATTTTGAAAAGTAAAACGAG-TAGTGT-A-T-ACGT----G-T-T-G-TT
* **** * * * * *
852664 CGAGTTTGACTCCCAGCAAACACAATCGCGATCGTAAAAAATTAAGGGGAGAATTT-TAAAAAGT
171 C----TTGATTATGTGAAAACA-AAT--AG-T-GT---AAA-GAAGAGGCG--TTTGT----AGT
** * * ** * * * *
852728 AAAACGAG-TAGTGTATACATGTTGTTCTTGATTACCTGAAACAAATAGTGTAAAGAT-GA-TGC
217 CCAAC-AGTTA-TG-ATA-A---T-TTC---CTT-CC--AAGC-AATAGACTCAGGTTCGACTCC
* *** * * * * **** *** ***
852790 GTTCGTAGTCCTACAGTTAGGATAATTACCCCTTCCAA-TCAATAGACTCGAGTTCGACTCCCGT
267 G---GGAAAAC-ACAATTACGATAGTAAAAAATT--AAGGGGA-A-A-T---GTT-GA--AAAGT
* * * ** * * * * *
852854 TAAATGCAATTACGATAGTAAAATA-TTAAGAGGAAAATGTTGA-AAAGTAAAACGAGTAGTGTA
317 AAAATG--AGTA-G-T-GT---ATACGT--GTTG---TTCTTGATTATGTGAAAC-A--A----A
** * * *
852917 TACGTGTTGTACTTGATTGTGTGAAACAAATAGTGTAATGAAGAGGTGTTAGTCCAACGATTAGG
362 TA---GTT-TA-AAGA-AGAG-G---C------T-T--T-------TG-TAGTCCAACAATTAGG
* * * * * * * * * *
852982 ATAATTGCCTTCCAAGAAATAGTCTCGGGTTGGACTCCCGACAAACGCAATTATG-CAGTAAATA
400 ATAATTGCCTTCCAAGCAATAGACCCGGGTTTGACTCTCGGCAAATGCAATTACGATAGTAAAAA
* * * * * * *
853046 TTTAAGGGGAAAATTTTAAAAAGTAAAACAAGTAGTGTACAGGTTTTG
465 ATTAAGGGGAAATTTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * *** ** ***
853094 TTATTGATTATGTGAAACAAATAGTGTAAAGAGGAGGTACTTGTCTTCCAACCACTAGGATAATT
1 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * * ** * * ***
853159 ACCTTCCAGGCAATAAACCCGGGTTCGATTGGCAAAAAGGTAATTTTTATAGTAAAAAATTAAGG
66 TCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGAAAA--CAATTACGATAGTAAAAAATTAAGG
** * * * * *
853224 GGAAAATTTTGAAAAGTAAAACGAACAGTGTTTACCGT-TTATGCTTGATTACGTG-AAATAAAT
129 GG-AAATTTTGAAAAGTAAAACGAGTAGTGTATA-CGTGTTGTTCTTGATTATGTGAAAACAAAT
* ** * * * * * * *
853287 AGTGTAAAGAATAGGTATTTGTAGTCTAACGGTTAGGGTAATTACCTTCCAAGCAATAGTC-CTG
192 AGTGTAAAGAAGAGGCGTTTGTAGTCCAACAGTTATGATAATTTCCTTCCAAGCAATAGACTC-A
* * ** * * *
853351 GGTTCGACTCCCGGCAAA-TGAATTAC-TTTGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAA
256 GGTTCGACTCCGGGAAAACACAATTACGATAGTAAAAAATTAAGGGG-AAATGTTGAAAAGTAAA
* * ** * * * * * ** *
853414 ACGAGTAGTCTATTTGTGTTGTTTTTGATTATATGAAACAAATAGTGTGAATAAGAGGAATTTAT
320 ATGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTTTAAAGAAGAGGCTTTTGT
** * * **
853479 AGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGAAC-CTCGGCATACACA
385 AGTCCAACAATTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTTG-ACTCTCGGCAAATGCA
*** * * * * *
853543 ATCGTGATAGTAAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAATGTGTAGTTTATACGTGTTG
449 ATTACGATAGT-AAAAAATTAAGGGGAAATTTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * *
853608 TTCTTTATTTATGTGAAACAAATAGTGTAAAGATGAGGTGTTTGTTA-TCCAACGGTTAGGATTA
1 TTCTTGA-TTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTG-TAGTCCAACGGTTAGGATAA
* * * * * *
853672 TTGCCTTCCAATCAAAAGACCCGGGTTCGACTCCCAATAAAAGCAATTATGATAGTAAACAATTA
64 TTTCCTTCCAAGCAATAGACCCGGGTTCGACTCCC--GAAAA-CAATTACGATAGTAAAAAATTA
* * * *
853737 AGGGGAAAATTTTAAAAAGTAAAACGAGTAGTCTATACGTGTTGTTCTTGATTATTTG-AAATAA
126 AGGGG-AAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAAACAA
* * * * * *
853801 ATAGTTTAAATAAGAGGCGTTTGTAGTCCAACAATTAGGATAATTTCCTTCCAAGGATTAGAC-C
190 ATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACAGTTATGATAATTTCCTTCCAAGCAATAGACTC
* * * * *
853865 TGGGTTCGACT-C-TGATAAACACAATTATGATAGAAAAAAATTGAGGGGAAATGTTGAAAAGTA
255 -AGGTTCGACTCCGGGA-AAACACAATTACGATAGTAAAAAATTAAGGGGAAATGTTGAAAAGTA
* * *
853928 AAACGAGTAGTGTATACATGTTATTCTTGATTATGTGAAA-AAATAGTTTAAAGAAGAGGCTTTT
318 AAATGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTTTAAAGAAGAGGCTTTT
* ** * * * * *
853992 GTAGTCCAGCTGTTAGGATTAATTGACTTCCAAGTAATAGACCCGGGTTCGACTCAT-GGGAAAC
383 GTAGTCCAACAATTAGGA-TAATTGCCTTCCAAGCAATAGACCCGGGTTTGACTC-TCGGCAAAT
* *
854056 GCAATAACGATAGTAAAAAATTAA--GGAAATTTTTTTGAAAAGTAAAACGAGTAGTGTATAGGT
446 GCAATTACGATAGTAAAAAATTAAGGGGAAA--TTTTTGAAAAGTAAAACGAGTAGTGTATACGT
854119 GTTG
509 GTTG
* * * * * *
854123 TTCTTGATTATGTGAAAAAAATAGTGTAATGAAGAGGCATTTATAGTCCAACCGTTAGGATAAAT
1 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * *** *
854188 TCCTTCCAAACAGTAGACCCGAGTTCGACTTGTGGAAAATGCAATTTCGATAGTAAAAAAATTAA
66 TCCTTCCAAGCAATAGACCCGGGTTCGAC-TCCCGAAAA--CAATTACGATAGT-AAAAAATTAA
* * * * * * * * *
854253 GTGGTAAATTTTGAAAAGTAAAACGAATAGTTTTTGCCTTTTGTGCTTGATTATGTG-AAACTAA
127 G-GGGAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAAACAAA
* * ** * * * * * *
854317 TAATGTAAAGAAGAGGCGTTTGTAGTCCTATTGTTAGGATAATTGCCTTACAAGCAATACACCCG
191 TAGTGTAAAGAAGAGGCGTTTGTAGTCCAACAGTTATGATAATTTCCTTCCAAGCAATAGACTCA
* * * * ** * * *
854382 GGTTTGAGTCCCAGCAAATGA-AATTACTATTGTAAAAAATTAAGGGGAAAAT-TTGAAAAATAA
256 GGTTCGACT-CCGGGAAAACACAATTACGATAGTAAAAAATTAAGGGG-AAATGTTGAAAAGT--
* * * * * * ** *
854445 AAAAAAT-AGTATTTATATACATTTTGTGCTTGATAAAATGAAACAAATAGTGTAAAG-AGTA-G
317 --AAAATGAGTA-GTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTTTAAAGAAG-AGG
* *** * * * ** * *
854507 -TTTT-TATTCCAATGGTTAGGATGATTGCCTTCCAAGAAATAGACTCTAGTTCGACT-TGCTGC
378 CTTTTGTAGTCCAACAATTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTTGACTCT-CGGC
* * * * * * * *
854569 AAATGCAATTACAATAGTAAAATATTAAGTGGAAAATTTAGAAAAGTAAGACGATTAGCGTATAT
442 AAATGCAATTACGATAGTAAAAAATTAAGGGGAAATTTTTGAAAAGTAAAACGAGTAGTGTATA-
*
854634 C-TTTTG
506 CGTGTTG
* * * * * * *
854640 TTCTTAATTATGTGAAACGAATACTATAAAGAAGAGGCGTTTGGAGTCCAACTGTTAGGATAAAT
1 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* ** * ** * * * *
854705 TCCTTCCAAGCAATAGGCCCGATTTTGACTTATCAAAAACGCAATTACGATTGTAAAAAGTTCAG
66 TCCTTCCAAGCAATAGACCCGGGTTCGAC-TCCCGAAAA--CAATTACGATAGTAAAAAATTAAG
* * * * *
854770 GGGAAAATTTTGAAAAGTAAAACAAATAGTATATACCT-TTCG-TGTTGATTATGTG-AAACAAA
128 GGG-AAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT-GTTCTTGATTATGTGAAAACAAA
* * * * * * * * * *
854832 TAGTGT-AAGAAAGGGGTGTTTTTAGTTCAACGGTTAGGATGATTGCCTTCCAAGCAATAAACCC
191 TAGTGTAAAG-AAGAGGCGTTTGTAGTCCAACAGTTATGATAATTTCCTTCCAAGCAATAGACTC
* * * ** * *
854896 GGGTTCGACTCAC-TGCAAATGCAATTACAATAGTAAAATATTAAGGGGA
255 AGGTTCGACTC-CGGGAAAACACAATTACGATAGTAAAAAATTAAGGGGA
854945 GAATTCTGAA
Statistics
Matches: 3389, Mismatches: 839, Indels: 559
0.71 0.18 0.12
Matches are distributed among these distances:
499 8 0.00
500 11 0.00
501 80 0.02
502 233 0.07
503 78 0.02
506 3 0.00
507 8 0.00
508 2 0.00
509 6 0.00
510 3 0.00
511 22 0.01
512 117 0.03
513 279 0.08
514 336 0.10
515 741 0.22
516 446 0.13
517 310 0.09
518 127 0.04
519 56 0.02
520 34 0.01
521 14 0.00
522 4 0.00
526 13 0.00
527 1 0.00
528 1 0.00
529 1 0.00
530 1 0.00
532 1 0.00
533 5 0.00
534 8 0.00
535 2 0.00
536 5 0.00
539 11 0.00
540 3 0.00
541 3 0.00
542 1 0.00
543 1 0.00
545 7 0.00
546 9 0.00
548 2 0.00
549 4 0.00
550 3 0.00
551 2 0.00
552 5 0.00
553 8 0.00
554 3 0.00
555 16 0.00
556 1 0.00
557 8 0.00
558 1 0.00
559 3 0.00
560 2 0.00
562 3 0.00
563 3 0.00
564 3 0.00
565 8 0.00
566 6 0.00
567 7 0.00
568 1 0.00
569 2 0.00
570 10 0.00
571 5 0.00
572 3 0.00
573 5 0.00
574 3 0.00
576 6 0.00
577 8 0.00
578 1 0.00
579 1 0.00
581 1 0.00
582 2 0.00
583 5 0.00
584 8 0.00
586 2 0.00
587 5 0.00
588 3 0.00
589 6 0.00
590 4 0.00
593 3 0.00
594 1 0.00
595 1 0.00
597 3 0.00
598 4 0.00
599 8 0.00
600 1 0.00
602 1 0.00
603 2 0.00
605 1 0.00
606 1 0.00
607 6 0.00
608 75 0.02
609 60 0.02
610 13 0.00
611 8 0.00
612 14 0.00
613 1 0.00
614 15 0.00
615 2 0.00
616 7 0.00
617 2 0.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.31
Consensus pattern (512 bp):
TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
TCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGAAAACAATTACGATAGTAAAAAATTAAGGGG
AAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAAACAAATAGTG
TAAAGAAGAGGCGTTTGTAGTCCAACAGTTATGATAATTTCCTTCCAAGCAATAGACTCAGGTTC
GACTCCGGGAAAACACAATTACGATAGTAAAAAATTAAGGGGAAATGTTGAAAAGTAAAATGAGT
AGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTTTAAAGAAGAGGCTTTTGTAGTCCA
ACAATTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTTGACTCTCGGCAAATGCAATTACGA
TAGTAAAAAATTAAGGGGAAATTTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
Found at i:852590 original size:94 final size:96
Alignment explanation
Indices: 852421--852609 Score: 276
Period size: 94 Copynumber: 2.0 Consensus size: 96
852411 TGGGAAACGC
* * **
852421 AATTACGATAGTAAAAAATTAAGGGAAATTTTTTGAAAAGTTAAACGAGTAGTGTATAGGTGTTG
1 AATTACGATAGTAAAAAATTAAAGGAAATTTTTTAAAAAGTTAAACGAGTAGTGTATACATGTTG
* *
852486 TTCTTGATTATGTGAAACAAATAGTGTAAAG
66 TTATTCATTATGTGAAACAAATAGTGTAAAG
*
852517 AATTACGTTAG-AAAAAATTAAAAGGAAA-TTTTTAAAAAG-TAAACGAGTAGTGTATACATGTT
1 AATTACGATAGTAAAAAATT-AAAGGAAATTTTTTAAAAAGTTAAACGAGTAGTGTATACATGTT
*
852579 TTTATTCATTATGTGAAACAAATAGTGTAAA
65 GTTATTCATTATGTGAAACAAATAGTGTAAA
852610 TAAGAGGCGT
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
94 49 0.58
95 18 0.21
96 17 0.20
ACGTcount: A:0.43, C:0.05, G:0.19, T:0.33
Consensus pattern (96 bp):
AATTACGATAGTAAAAAATTAAAGGAAATTTTTTAAAAAGTTAAACGAGTAGTGTATACATGTTG
TTATTCATTATGTGAAACAAATAGTGTAAAG
Found at i:852741 original size:266 final size:267
Alignment explanation
Indices: 852283--852783 Score: 657
Period size: 266 Copynumber: 1.9 Consensus size: 267
852273 GGAAATGTTG
* * * *
852283 AAAAGTAAAATGAGTAGTGTATACATGTTATTCTTGATTATGTGAAAAAAATAATTTAAAGAAGA
1 AAAAGTAAAACGAGTAGTGTATACATGTTATTATTCATTATGTGAAAAAAATAATGTAAAGAAGA
* * ** * * **
852348 GGCTTTTGTTGTCCAGTGGTTAGGATTAATTGCCTTCCAAGCAATAGACCCGGGTTTAACTCATG
66 GGCGTTTGTAGTCCAACGGTTAGGAGTAATTGCCTTCCAAGCAATAGACCCGAGTTTAACTCACA
* * * * *
852413 GGAAACGCAATTACGATAGTAAAAAATTAAGGGAAATTTTTTGAAAAGTTAAACGAGTAGTGTAT
131 GCAAACACAATCACGATAGTAAAAAATTAAGGGAAA-TTTTTAAAAAGTAAAACGAGTAGTGTAT
** **
852478 AGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAATTACGTTAGAAAAAATTAAAAGGA
195 ACATGTTGTTCTTGATTACCTGAAACAAATAGTGTAAAGAATTACGTTAGAAAAAATTAAAAGGA
852543 AATTTTTA
260 AATTTTTA
* * * *
852551 AAAAGT-AAACGAGTAGTGTATACATGTTTTTATTCATTATGTGAAACAAATAGTGTAAATAAGA
1 AAAAGTAAAACGAGTAGTGTATACATGTTATTATTCATTATGTGAAAAAAATAATGTAAAGAAGA
* * ** * *
852615 GGCGTTTGTAGTCCAACGGTTTGG-GTAATTGCCTTCCAAGCTATAGATTCGAGTTTGACTCCCA
66 GGCGTTTGTAGTCCAACGGTTAGGAGTAATTGCCTTCCAAGCAATAGACCCGAGTTTAACTCACA
* *
852679 GCAAACACAATCGCGATCGTAAAAAATTAAGGGGAGAA-TTTTAAAAAGTAAAACGAGTAGTGTA
131 GCAAACACAATCACGATAGTAAAAAATTAA-GGGA-AATTTTTAAAAAGTAAAACGAGTAGTGTA
852743 TACATGTTGTTCTTGATTACCTGAAACAAATAGTGTAAAGA
194 TACATGTTGTTCTTGATTACCTGAAACAAATAGTGTAAAGA
852784 TGATGCGTTC
Statistics
Matches: 198, Mismatches: 33, Indels: 6
0.84 0.14 0.03
Matches are distributed among these distances:
266 117 0.59
267 73 0.37
268 8 0.04
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (267 bp):
AAAAGTAAAACGAGTAGTGTATACATGTTATTATTCATTATGTGAAAAAAATAATGTAAAGAAGA
GGCGTTTGTAGTCCAACGGTTAGGAGTAATTGCCTTCCAAGCAATAGACCCGAGTTTAACTCACA
GCAAACACAATCACGATAGTAAAAAATTAAGGGAAATTTTTAAAAAGTAAAACGAGTAGTGTATA
CATGTTGTTCTTGATTACCTGAAACAAATAGTGTAAAGAATTACGTTAGAAAAAATTAAAAGGAA
ATTTTTA
Found at i:852926 original size:440 final size:441
Alignment explanation
Indices: 852105--852954 Score: 1043
Period size: 440 Copynumber: 1.9 Consensus size: 441
852095 AAGGGTCAAA
* * * * * *
852105 TTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATTTGAAAACAATATAGTTTA
1 TTTTAAAAAGTAAAACGAGTAGTGTATACATGTTGTTATTCATTATGTGAAAACAATATAGTGTA
* *
852170 AATAAGAGGTGTTTGTAGTCCAACAATTATGATAATTTCCTTCCAAGGATTAGACCCAGGTTCGA
66 AATAAGAGGCGTTTGTAGTCCAACAATTATGATAATTGCCTTCCAAGGATTAGACCCAGGTTCGA
** * * * * *
852235 CTCCTGGTAAACACAATTACGATAGAAAAAAATTGAGGGGAAATGTTGAAAAGTAAAATGAGTAG
131 CTCCCAGCAAACACAATCACGATAGAAAAAAATTAAGGGGAAATGTTAAAAAGTAAAACGAGTAG
** * * * * *
852300 TGTATACATGTTATTCTTGATTATGTGAAAAAAATAATTTAAAGAAGAGGCTTTTGTTGTCCAGT
196 TGTATACATGTTATTCTTGATTACCTGAAAAAAATAATGTAAAGAAGAGGCGTTCGTAGTCCAGC
* * * * *
852365 GGTTAGGATTAATTGCCTTCCAAGCAATAGACCCGGGTTTAACTCATGGGAAACGCAATTACGAT
261 AGTTAGGATTAATTCCCTTCCAAGCAATAGACCCGAGTTCAACTCACGGGAAACGCAATTACGAT
* * * * *
852430 AGTAAAAAATTAAGGGAAATTTTTTGAAAAGTTAAACGAGTAGTGTATAGGTGTTGTTCTTGATT
326 AGTAAAAAATTAAGGGAAATATGTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTACTTGATT
852495 ATGTGAAACAAATAGTGTAAAGAATTACGTTAGAAAAAATTAAAAGGAAAT
391 ATGTGAAACAAATAGTGTAAAGAATTACGTTAGAAAAAATTAAAAGGAAAT
*
852546 TTTTAAAAAGT-AAACGAGTAGTGTATACATGTTTTTATTCATTATGTG-AAACAA-ATAGTGTA
1 TTTTAAAAAGTAAAACGAGTAGTGTATACATGTTGTTATTCATTATGTGAAAACAATATAGTGTA
** * * **
852608 AATAAGAGGCGTTTGTAGTCCAACGGTT-TGGGTAATTGCCTTCCAA-GCTATAGATTC-GAGTT
66 AATAAGAGGCGTTTGTAGTCCAACAATTAT-GATAATTGCCTTCCAAGGAT-TAGACCCAG-GTT
* * * * *
852670 TGACTCCCAGCAAACACAATCGCGATCGTAAAAAATTAAGGGGAGAATTTTAAAAAGTAAAACGA
128 CGACTCCCAGCAAACACAATCACGATAGAAAAAAATTAAGGGGA-AATGTTAAAAAGTAAAACGA
* * * * *
852735 GTAGTGTATACATGTTGTTCTTGATTACCTGAAACAAATAGTGTAAAGATGATGCGTTCGTAGTC
192 GTAGTGTATACATGTTATTCTTGATTACCTGAAAAAAATAATGTAAAGAAGAGGCGTTCGTAGTC
* * * * ** *
852800 CTA-CAGTTAGGA-TAATTACCCCTTCCAATCAATAGACTCGAGTTCGACTCCCGTTAAATGCAA
257 C-AGCAGTTAGGATTAATT--CCCTTCCAAGCAATAGACCCGAGTTCAACTCACGGGAAACGCAA
*
852863 TTACGATAGTAAAATATTAAGAGGAAA-ATGTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGT
319 TTACGATAGTAAAAAATTAAG-GGAAATATGTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGT
*
852927 ACTTGATTGTGTGAAACAAATAGTGTAA
383 ACTTGATTATGTGAAACAAATAGTGTAA
852955 TGAAGAGGTG
Statistics
Matches: 343, Mismatches: 58, Indels: 17
0.82 0.14 0.04
Matches are distributed among these distances:
437 4 0.01
438 94 0.27
439 85 0.25
440 145 0.42
441 15 0.04
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (441 bp):
TTTTAAAAAGTAAAACGAGTAGTGTATACATGTTGTTATTCATTATGTGAAAACAATATAGTGTA
AATAAGAGGCGTTTGTAGTCCAACAATTATGATAATTGCCTTCCAAGGATTAGACCCAGGTTCGA
CTCCCAGCAAACACAATCACGATAGAAAAAAATTAAGGGGAAATGTTAAAAAGTAAAACGAGTAG
TGTATACATGTTATTCTTGATTACCTGAAAAAAATAATGTAAAGAAGAGGCGTTCGTAGTCCAGC
AGTTAGGATTAATTCCCTTCCAAGCAATAGACCCGAGTTCAACTCACGGGAAACGCAATTACGAT
AGTAAAAAATTAAGGGAAATATGTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTACTTGATT
ATGTGAAACAAATAGTGTAAAGAATTACGTTAGAAAAAATTAAAAGGAAAT
Found at i:853337 original size:342 final size:340
Alignment explanation
Indices: 852528--854905 Score: 1730
Period size: 342 Copynumber: 6.9 Consensus size: 340
852518 ATTACGTTAG
** * * * * * ** *
852528 AAAAAATTAAAAGGAAATTTTTAAAAAGT-AAACGAGTAGTGTATACATGTTTTTATTCATTATG
1 AAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTTTACGTGTTGTGCTTGATTATG
* * * * * **
852592 TGAAACAAATAGTGTAAATAAGAGGCGTTTGTAGTCCAACGGTTTGGGTAATTGCCTTCCAAGCT
66 TGAAACAAATAGTGTAAAGAAGAGG-TTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGAA
** * * * *** * *
852657 ATAGATTCGAGTTTGACTCCC-AGCAAACACAATCGCGATCGTAAAAAATTAAGGGGAGAATTTT
130 ATAGACCCGGGTTCGACTCCCGA-CAAACGCAATTATGATAGTAAAAAATTAAGGGGAAAATTTT
* ** ** *
852721 AAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTACCTGAAACAAATAGTGTAAAGATG
194 AAAAAGTAAAACGAGTAGTCTATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAG
* * ** * * * *
852786 ATGCGTTCGTAGTCCTA-CAGTTAGGATAATTACCCCTTCCAATCAATAGACTCGAGTTCGACTC
259 AGGCATTTATAGTCCAACCA-TTAGGATAATT---CCTTCCAAGCAATAGACCCGGGTTCGACT-
* ** * **
852850 CCGTTAAATGCAATTACGATAGT
319 -TGGAAAAAGCAATTTTGATAGT
* * * * * *
852873 AAAATATTAAGAGGAAAATGTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTACTTGATTGTG
1 AAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTTTACGTGTTGTGCTTGATTATG
* * * *
852938 TGAAACAAATAGTGTAATGAAGAGG-TGT-TAGTCCAACGATTAGGATAATTGCCTTCCAAGAAA
66 TGAAACAAATAGTGTAAAGAAGAGGTTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGAAA
* * * * * *
853001 TAGTCTCGGGTTGGACTCCCGACAAACGCAATTATG-CAGTAAATATTTAAGGGGAAAATTTTAA
131 TAGACCCGGGTTCGACTCCCGACAAACGCAATTATGATAGTAAAAAATTAAGGGGAAAATTTTAA
* * * * * *
853065 AAAGTAAAACAAGTAGTGTACAGGTTTTGTTATTGATTATGTGAAACAAATAGTGTAAAGAGGAG
196 AAAGTAAAACGAGTAGTCTATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAG
* * * ** * * *
853130 GTACTTGTCTTCCAACCACTAGGATAATTACCTTCCAGGCAATAAACCCGGGTTCGA-TTGGCAA
261 GCATTTATAGTCCAACCATTAGGATAATT-CCTTCCAAGCAATAGACCCGGGTTCGACTTGG-AA
* *
853194 AAAGGTAATTTTTATAGT
324 AAA-GCAATTTTGATAGT
** * *
853212 AAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAACAGTGTTTACCGT-TTATGCTTGATTAC
1 AAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTTTA-CGTGTTGTGCTTGATTAT
* * * * *
853276 GTGAAATAAATAGTGTAAAGAATAGGTATTTGTAGTCTAACGGTTAGGGTAATTACCTTCCAAGC
65 GTGAAACAAATAGTGTAAAGAAGAGGT-TTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGA
* * * * *
853341 AATAGTCCTGGGTTCGACTCCCGGCAAATG-AATTACT--TTGTAAAAAATTAAGGGGAAAATTT
129 AATAGACCCGGGTTCGACTCCCGACAAACGCAATTA-TGATAGTAAAAAATTAAGGGGAAAATTT
* ** * * * *
853403 TGAAAAGTAAAACGAGTAGTCTATTTGTGTTGTTTTTGATTATATGAAACAAATAGTGTGAATAA
193 TAAAAAGTAAAACGAGTAGTCTATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAA
* ** *
853468 GAGGAATTTATAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGAACCTC
258 GAGGCATTTATAGTCCAACCATTAGGATAATT-CCTTCCAAGCAATAGACCCGGGTTCG-A-CTT
* * **
853533 GGCATACA-CAATCGTGATAGT
320 GG-AAAAAGCAATTTTGATAGT
* * * * *
853554 AAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAATGTGTAGT-TTATACGTGTTGTTCTTTATTT
1 -AAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTT-TACGTGTTGTGCTTGA-TT
* * *
853618 ATGTGAAACAAATAGTGTAAAGATGAGGTGTTTGTTA-TCCAACGGTTAGGATTATTGCCTTCCA
63 ATGTGAAACAAATAGTGTAAAGAAGAGGT-TTTG-TAGTCCAACGGTTAGGATAATTACCTTCCA
* * * * *
853682 ATCAAA-AGACCCGGGTTCGACTCCCAATAAAAGCAATTATGATAGTAAACAATTAAGGGGAAAA
126 A-GAAATAGACCCGGGTTCGACTCCCGACAAACGCAATTATGATAGTAAAAAATTAAGGGGAAAA
* * * *
853746 TTTTAAAAAGTAAAACGAGTAGTCTATACGTGTTGTTCTTGATTATTTGAAATAAATAGTTTAAA
190 TTTTAAAAAGTAAAACGAGTAGTCTATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAA
* * * * * * *
853811 TAAGAGGCGTTTGTAGTCCAACAATTAGGATAATTTCCTTCCAAGGATTAGACCTGGGTTCGACT
255 GAAGAGGCATTTATAGTCCAACCATTAGGATAA-TTCCTTCCAAGCAATAGACCCGGGTTCGACT
* *
853876 CT-GATAAACA-CAATTATGATAGA
319 -TGGA-AAA-AGCAATTTTGATAGT
* * * * * *
853899 AAAAAATTGAGGGG-AAATGTTGAAAAGTAAAACGAGTAGTGTATACATGTTATTCTTGATTATG
1 AAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTTTACGTGTTGTGCTTGATTATG
* * *
853963 TGAAA-AAATAGTTTAAAGAAGAGGCTTTTGTAGTCCAGCTGTTAGGATTAATTGA-CTTCCAAG
66 TGAAACAAATAGTGTAAAGAAGAGG-TTTTGTAGTCCAACGGTTAGGA-TAATT-ACCTTCCAAG
* ** ** * * *
854026 TAATAGACCCGGGTTCGACTCATGGGAAACGCAATAACGATAGTAAAAAATTAA--GGAAATTTT
128 AAATAGACCCGGGTTCGACTCCCGACAAACGCAATTATGATAGTAAAAAATTAAGGGGAAA--AT
* * * *
854089 TTTGAAAAGTAAAACGAGTAGTGTATAGGTGTTGTTCTTGATTATGTGAAAAAAATAGTGTAATG
191 TTTAAAAAGTAAAACGAGTAGTCTATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * * *
854154 AAGAGGCATTTATAGTCCAACCGTTAGGATAAATTCCTTCCAAACAGTAGACCCGAGTTCGACTT
256 AAGAGGCATTTATAGTCCAACCATTAGGAT-AATTCCTTCCAAGCAATAGACCCGGGTTCGAC-T
* *
854219 GTGGAAAATGCAATTTCGATAGT
319 -TGGAAAAAGCAATTTTGATAGT
* * * * * * *
854242 AAAAAAATTAAGTGGTAAATTTTGAAAAGTAAAACGAATAGTTTTTGCCTTTTGTGCTTGATTAT
1 -AAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTTTACGTGTTGTGCTTGATTAT
* * * * ** * * *
854307 GTGAAACTAATAATGTAAAGAAGAGGCGTTTGTAGTCCTATTGTTAGGATAATTGCCTTACAAGC
65 GTGAAACAAATAGTGTAAAGAAGAGG-TTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGA
* * * * * *
854372 AATACACCCGGGTTTGAGTCCC-AGCAAATGAAATTACT-ATTGTAAAAAATTAAGGGGAAAATT
129 AATAGACCCGGGTTCGACTCCCGA-CAAACGCAATTA-TGATAGTAAAAAATTAAGGGGAAAATT
* ** * * ** * * * **
854435 TGAAAAA-TAAAAAAAATAGTATTTATATACATTTTGTGCTTGATAAAATGAAACAAATAGTGTA
192 TTAAAAAGT---AAAACGAGTA-GTCTATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTA
* * *** * * * **
854499 AAG-AGTA-G--TTTTTATTCCAATGGTTAGGATGATTGCCTTCCAAGAAATAGACTCTAGTTCG
253 AAGAAG-AGGCATTTATAGTCCAACCATTAGGATAATT-CCTTCCAAGCAATAGACCCGGGTTCG
* * ***
854560 ACTTGCTGCAAATGCAATTACAATAGT
316 ACTTG--GAAAAAGCAATTTTGATAGT
* * * * * * * * * *
854587 AAAATATTAAGTGGAAAATTTAGAAAAGTAAGACGATTAGCGTATATC-TTTTGTTCTTAATTAT
1 AAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTTTA-CGTGTTGTGCTTGATTAT
* * * * * *
854651 GTGAAACGAATACTATAAAGAAGAGGCGTTTGGAGTCCAACTGTTAGGATAAATT-CCTTCCAAG
65 GTGAAACAAATAGTGTAAAGAAGAGG-TTTTGTAGTCCAACGGTTAGGAT-AATTACCTTCCAAG
* * ** * ** * * * * *
854715 CAATAGGCCCGATTTTGACTTATC-AAAAACGCAATTACGATTGTAAAAAGTTCAGGGGAAAATT
128 AAATAGACCCGGGTTCGAC-TCCCGACAAACGCAATTATGATAGTAAAAAATTAAGGGGAAAATT
* * * * ** *
854779 TTGAAAAGTAAAACAAATAGTATATACCT-TTCG-TGTTGATTATGTGAAACAAATAGTGT-AAG
192 TTAAAAAGTAAAACGAGTAGTCTATAGGTGTT-GTTCTTGATTATGTGAAACAAATAGTGTAAAG
* ** * * ** * *
854841 AAAGGGGTGTTTTTAGTTCAACGGTTAGGATGATTGCCTTCCAAGCAATAAACCCGGGTTCGACT
256 -AAGAGGCATTTATAGTCCAACCATTAGGATAATT-CCTTCCAAGCAATAGACCCGGGTTCGACT
854906 CACTGCAAAT
Statistics
Matches: 1634, Mismatches: 334, Indels: 132
0.78 0.16 0.06
Matches are distributed among these distances:
337 1 0.00
338 3 0.00
339 87 0.05
340 55 0.03
341 176 0.11
342 344 0.21
343 206 0.13
344 278 0.17
345 216 0.13
346 215 0.13
347 18 0.01
348 35 0.02
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.30
Consensus pattern (340 bp):
AAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTTTACGTGTTGTGCTTGATTATG
TGAAACAAATAGTGTAAAGAAGAGGTTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGAAA
TAGACCCGGGTTCGACTCCCGACAAACGCAATTATGATAGTAAAAAATTAAGGGGAAAATTTTAA
AAAGTAAAACGAGTAGTCTATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAG
GCATTTATAGTCCAACCATTAGGATAATTCCTTCCAAGCAATAGACCCGGGTTCGACTTGGAAAA
AGCAATTTTGATAGT
Found at i:854133 original size:172 final size:171
Alignment explanation
Indices: 852517--854965 Score: 1968
Period size: 172 Copynumber: 14.3 Consensus size: 171
852507 TAGTGTAAAG
* * * * * *
852517 AATTACGTTAG-AAAAAATTAAAAGGAAATTTTTAAAAAGT-AAACGAGTAGTGTATACATGTTT
1 AATTACGATAGTAAAAAATT-AAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * *
852580 TTATTCATTATGTGAAACAAATAGTGTAAATAAGAGGCGTTTGTAGTCCAACGGTTTGGGTAATT
65 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* ** * * * *
852645 GCCTTCCAAGCTATAGATTCGAGTTTGACTCCCAGCAAACAC
130 GCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGC
** * * * *
852687 AATCGCGATCGTAAAAAATTAAGGGGAGAATTTTAAAAAGTAAAACGAGTAGTGTATACATGTTG
1 AATTACGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
** * * * * *
852752 TTCTTGATTACCTGAAACAAATAGTGTAAAGATGATGCGTTCGTAGTCCTACAGTTAGGATAATT
65 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * * ** *
852817 ACCCCTTCCAATCAATAGACTCGAGTTCGACTCCCGTTAAATGC
130 --GCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGC
* *
852861 AATTACGATAGTAAAATATTAAGAGGAAAATGTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
1 AATTACGATAGTAAAAAATTAAG-GGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * *
852926 TACTTGATTGTGTGAAACAAATAGTGTAATGAAGA-G-GTGT-TAGTCCAACGATTAGGATAATT
65 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * * *
852988 GCCTTCCAAGAAATAGTCTCGGGTTGGACTCCCGACAAACGC
130 GCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGC
* * * * * * * * *
853030 AATTATG-CAGTAAATATTTAAGGGGAAAATTTTAAAAAGTAAAACAAGTAGTGTACAGGTTTTG
1 AATTACGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * *** ** ***
853094 TTATTGATTATGTGAAACAAATAGTGTAAAGAGGAGGTACTTGTCTTCCAACCACTAGGATAATT
65 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * * * *
853159 ACCTTCCAGGCAATAAACCCGGGTTCGA-T--TGGCAAAAAGGT
130 GCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGC--AAACGC
*** ** *
853200 AATTTTTATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAACAGTGTTTACCGT-TT
1 AATTACGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATA-CGTGTT
* * * * * ** * *
853264 ATGCTTGATTACGTGAAATAAATAGTGTAAAGAATAGGTATTTGTAGTCTAACGGTTAGGGTAAT
64 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * *
853329 TACCTTCCAAGCAATAGTCCTGGGTTCGACTCCCGGCAAATG-
129 TGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGC
* * * **
853371 AATTAC-TTTGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTCTATTTGTGTTG
1 AATTACGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * ** *
853435 TTTTTGATTATATGAAACAAATAGTGTGAATAAGAGGAATTTATAGTCCAACGGTTAGGATAATT
65 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * *
853500 GCCTTCCAAGCAATAGACCCGGGTTCGAAC-CTCGGCATACAC
130 GCCTTCCAAGCAATAGACCCGGGTTCG-ACTCCCGGCAAACGC
*** * * * *
853542 AATCGTGATAGTAAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAATGTGTAGTTTATACGTGTT
1 AATTACGATAGT-AAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * * *
853607 GTTCTTTATTTATGTGAAACAAATAGTGTAAAGATGAGGTGTTTGTTA-TCCAACGGTTAGGATT
64 GTTCTTGA-TTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTG-TAGTCCAACGGTTAGGATA
* * *** *
853671 ATTGCCTTCCAATCAAAAGACCCGGGTTCGACTCCCAATAAAAGC
127 ATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGC
* * * *
853716 AATTATGATAGTAAACAATTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAGTCTATACGTGTTG
1 AATTACGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * **
853781 TTCTTGATTATTTGAAATAAATAGTTTAAATAAGAGGCGTTTGTAGTCCAACAATTAGGATAATT
65 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * * * ** *
853846 TCCTTCCAAGGATTAGACCTGGGTTCGACT-CTGATAAACAC
130 GCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGC
* * * * * * *
853887 AATTATGATAGAAAAAAATTGAGGGGAAATGTTGAAAAGTAAAACGAGTAGTGTATACATGTTAT
1 AATTACGATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGT
* * * *
853952 TCTTGATTATGTGAAA-AAATAGTTTAAAGAAGAGGCTTTTGTAGTCCAGCTGTTAGGATTAATT
66 TCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGA-TAATT
* * ** *
854016 GACTTCCAAGTAATAGACCCGGGTTCGACTCATGGGAAACGC
130 GCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGC
* * *
854058 AATAACGATAGTAAAAAATTAA-GGAAATTTTTTTGAAAAGTAAAACGAGTAGTGTATAGGTGTT
1 AATTACGATAGTAAAAAATTAAGGGAAA--ATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * * * *
854122 GTTCTTGATTATGTGAAAAAAATAGTGTAATGAAGAGGCATTTATAGTCCAACCGTTAGGATAAA
64 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT-AA
* * * *** * *
854187 TT-CCTTCCAAACAGTAGACCCGAGTTCGACTTGTGGAAAATGC
128 TTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGC
* * * * * * * *
854230 AATTTCGATAGTAAAAAAATTAAGTGGTAAATTTTGAAAAGTAAAACGAATAGTTTTTGCCTTTT
1 AATTACGATAGT-AAAAAATTAAG-GGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * * * **
854295 GTGCTTGATTATGTGAAACTAATAATGTAAAGAAGAGGCGTTTGTAGTCCTATTGTTAGGATAAT
64 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * * * * *
854360 TGCCTTACAAGCAATACACCCGGGTTTGAGTCCCAGCAAATGA
129 TGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGC
* * * ** * * *
854403 AATTACTATTGTAAAAAATTAAGGGGAAAA-TTTGAAAAATAAAAAAAATAGTATTTATATACAT
1 AATTACGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGT---AAAACGAGTA-GTGTATACGT
* * * ** * * *
854467 TTTGTGCTTGATAAAATGAAACAAATAGTGTAAAG-AGTA---GTTTTTATTCCAATGGTTAGGA
61 GTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAG-AGGCGTTTGTAGTCCAACGGTTAGGA
* * * ** ** * *
854528 TGATTGCCTTCCAAGAAATAGACTCTAGTTCGACTTGCTGCAAATGC
125 TAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGC
* * * * * * *
854575 AATTACAATAGTAAAATATTAAGTGGAAAATTTAGAAAAGTAAGACGATTAGCGTATATC-TTTT
1 AATTACGATAGTAAAAAATTAAG-GGAAAATTTTGAAAAGTAAAACGAGTAGTGTATA-CGTGTT
* * * * * *
854639 GTTCTTAATTATGTGAAACGAATACTATAAAGAAGAGGCGTTTGGAGTCCAACTGTTAGGATAAA
64 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT-AA
* ** * ** **
854704 TT-CCTTCCAAGCAATAGGCCCGATTTTGACTTATC-AAAAACGC
128 TTGCCTTCCAAGCAATAGACCCGGGTTCGAC-TCCCGGCAAACGC
* * * * * * *
854747 AATTACGATTGTAAAAAGTTCAGGGGAAAATTTTGAAAAGTAAAACAAATAGTATATACCT-TTC
1 AATTACGATAGTAAAAAATT-AAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT-
* * * * * *
854811 G-TGTTGATTATGTGAAACAAATAGTGT-AAGAAAGGGGTGTTTTTAGTTCAACGGTTAGGATGA
64 GTTCTTGATTATGTGAAACAAATAGTGTAAAG-AAGAGGCGTTTGTAGTCCAACGGTTAGGATAA
* * * *
854874 TTGCCTTCCAAGCAATAAACCCGGGTTCGACTCACTGCAAATGC
128 TTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGC
* * * * **
854918 AATTACAATAGTAAAATATTAAGGGGAGAATTCTGAAATTTAAAACGA
1 AATTACGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGA
854966 ATAATGTTCA
Statistics
Matches: 1812, Mismatches: 409, Indels: 115
0.78 0.18 0.05
Matches are distributed among these distances:
168 77 0.04
169 113 0.06
170 254 0.14
171 383 0.21
172 435 0.24
173 293 0.16
174 215 0.12
175 42 0.02
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.30
Consensus pattern (171 bp):
AATTACGATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGT
TCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTG
CCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGC
Found at i:854918 original size:688 final size:684
Alignment explanation
Indices: 852528--854968 Score: 1825
Period size: 687 Copynumber: 3.6 Consensus size: 684
852518 ATTACGTTAG
* * * * * * * *
852528 AAAAAATTAAAAGGAAATTTTTAAAAAGT-AAACGAGTAGTGTATACATGTTTTTATTCATTATG
1 AAAAAATT-AAGGGAAAATGTTGAAAAGTAAAACGAGTAGCGTATACATGTTATTCTTAATTATG
* * * * * * * *
852592 TGAAACAAATAGTGTAAATAAGAGGCGTTTGTAGTCCAACGGTTTGGGT-AATTGCCTTCCAAGC
65 TGAAA-AAATACTATAAAGAAGAGGCGTTTGGAGTCCAACTGTTAGGATAAATTGACTTCCAAGC
* ** * * * * ** * *
852656 TATAGATTCGAGTTTGACTC-CCAGCAAACACAATCGCGATCGTAAAAAATTAAGGGGAGAATTT
129 AATAGACCCGAGTTCGACTCATCA-AAAACGCAATAACGATTGTAAAAAATT-AGGGGAAAATTT
* * * ** *
852720 TAAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTACCTGAAACAAATAGTGTAAAGAT
192 TGAAAAGTAAAACGAGTAGTATATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGT-AAGAA
* ** ** * * * * * *
852785 GATGCGTTCGTAGTCCTACAGTTAGGATAATTACCCCTTCCAATCAATAGACTCGAGTTCGACTC
256 GAGGAATTTATAGTCCAACGGTTAGGATAATT--GCCTTCCAAGCAATAGACCCGGGTTCGACTC
* * * * * *
852850 -CCGTTAAATGCAATTACGATAGT-AAAATATTAAGAGGAAAATGTTGAAAAGTAAAACGAGTAG
319 TCTG-CAAATGCAATTTCGATAGTAAAAAAATTAAG-GGAAAATTTTGAAAAGTAAAACGAATAG
* * * * * *
852913 TGTATACGTGTTGTACTTGA-TTGTGTGAAACAAATAGTGTAATGAAGA-G-G--TGTTAGTCCA
382 TTTATACCTGTTGTGCTTGATTTATGTGAAACAAATAATGTAAAGAAGAGGCGTTTGTTA-TCCA
* * ** * * * * *
852973 ACGATTAGGATAATTGCCTTCCAAG-AAATAGTCTCGGGTTGGACTCCCGACAAACGCAATTATG
446 ACGGTTAGGATAATTGCCTTACAAGCAAA-ACACCCGGGTTCGACTCCCAACAAAAGAAATTATG
* * * * * * ** * **
853037 -CAGTAAATATTTAAGGGGAAAATTTTAAAAAGTAAAACA-AGTAGTGTACAGGTTTTGTTATTG
510 ATAGTAAAAAATTAAGGGGAAAATTTGAAAAAGTAAAA-AGAGTAGTATATACATGTTGTGCTTG
* ** ** * * *
853100 ATTATGTGAAACAAATAGTGT-A-AAGAGGAGGTACTTGTCTTCCAACCACTAGGATAATTACCT
574 ATAAAATGAAACAAATAGTGTAATAAGAGGA-GT--TTGTAGTCCAACAATTAGGATAATTGCCT
* * * * * * * * *** *
853163 TCCAGGCAATAAACCCGGGTTCGA-T-TGGCAAAAAGGTAATTTTTATAGT
636 TCCAAGAAATAGACCTGAGTTCGACTCTGACAAACA--CAATTACAATAGA
* ** * * * * * *
853212 AAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAACAGTGTTTAC-CGTTTATGCTTGATTAC
1 AAAAAATTAA-GGGAAAATGTTGAAAAGTAAAACGAGTAGCGTATACATG-TTATTCTTAATTAT
* * * ** * * * *
853276 GTGAAATAAATAGTGTAAAGAATAGGTATTTGTAGTCTAACGGTTAGGGT-AATT-ACCTTCCAA
64 GTGAAA-AAATACTATAAAGAAGAGGCGTTTGGAGTCCAACTGTTAGGATAAATTGA-CTTCCAA
* * * * ** * * *
853339 GCAATAGTCCTGGGTTCGACTC-CCGGCAAATG-AATTAC-TTTGTAAAAAATTAAGGGGAAAAT
127 GCAATAGACCCGAGTTCGACTCATC-AAAAACGCAATAACGATTGTAAAAAATT-AGGGGAAAAT
* ** * * *
853401 TTTGAAAAGTAAAACGAGTAGTCTATTTGTGTTGTTTTTGATTATATGAAACAAATAGTGTGAAT
190 TTTGAAAAGTAAAACGAGTAGTATATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGT-AAG
853466 AAGAGGAATTTATAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGAAC-
254 AAGAGGAATTTATAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCG-ACT
* * ** * * * **
853530 CTCGGCATACACAATCGT-GATAGTAAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAATGTGTA
318 CTCTGCAAATGCAAT-TTCGATAGTAAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAATA
* * * * * *
853594 GTTTATACGTGTTGTTCTTTATTTATGTGAAACAAATAGTGTAAAGATGAGGTGTTTGTTATCCA
381 GTTTATACCTGTTGTGCTTGATTTATGTGAAACAAATAATGTAAAGAAGAGGCGTTTGTTATCCA
* * * * * *
853659 ACGGTTAGGATTATTGCCTTCCAATCAAAAGACCCGGGTTCGACTCCCAATAAAAGCAATTATGA
446 ACGGTTAGGATAATTGCCTTACAAGCAAAACACCCGGGTTCGACTCCCAACAAAAGAAATTATGA
* * * * * *
853724 TAGTAAACAATTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAGTCTATACGTGTTGTTCTTGAT
511 TAGTAAAAAATTAAGGGGAAAATTTGAAAAAGTAAAAAGAGTAGTATATACATGTTGTGCTTGAT
* ** * * * *
853789 TATTTGAAATAAATAGTTTAAATAAGAGGCGTTTGTAGTCCAACAATTAGGATAATTTCCTTCCA
576 AAAATGAAACAAATAGTGT-AATAAGAGGAGTTTGTAGTCCAACAATTAGGATAATTGCCTTCCA
* * * * **
853854 AGGATTAGACCTGGGTTCGACTCTGATAAACACAATTATGATAGA
640 AGAAATAGACCTGAGTTCGACTCTGACAAACACAATTACAATAGA
* * * *
853899 AAAAAATTGAGGGGAAATGTTGAAAAGTAAAACGAGTAGTGTATACATGTTATTCTTGATTATGT
1 AAAAAATTAAGGGAAAATGTTGAAAAGTAAAACGAGTAGCGTATACATGTTATTCTTAATTATGT
* * * * * * *
853964 GAAAAAATAGTTTAAAGAAGAGGCTTTTGTAGTCCAGCTGTTAGGATTAATTGACTTCCAAGTAA
66 GAAAAAATACTATAAAGAAGAGGCGTTTGGAGTCCAACTGTTAGGATAAATTGACTTCCAAGCAA
* *** * * *
854029 TAGACCCGGGTTCGACTCATGGGAAACGCAATAACGATAGTAAAAAATTA-AGGAAATTTTTTTG
131 TAGACCCGAGTTCGACTCATCAAAAACGCAATAACGATTGTAAAAAATTAGGGGAAA--ATTTTG
* * *
854093 AAAAGTAAAACGAGTAGTGTATAGGTGTTGTTCTTGATTATGTGAAAAAAATAGTGTAATGAAGA
194 AAAAGTAAAACGAGTAGTATATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAA-GAAGA
* * * * * *
854158 GGCATTTATAGTCCAACCGTTAGGATAAATT-CCTTCCAAACAGTAGACCCGAGTTCGACT-TGT
258 GGAATTTATAGTCCAACGGTTAGGAT-AATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCTCT
* *
854221 GGAAAATGCAATTTCGATAGTAAAAAAATTAAGTGGTAAATTTTGAAAAGTAAAACGAATAGTTT
322 -GCAAATGCAATTTCGATAGTAAAAAAATTAAG-GGAAAATTTTGAAAAGTAAAACGAATAGTTT
* * * * * **
854286 TTGCCTTTTGTGCTTGA-TTATGTGAAACTAATAATGTAAAGAAGAGGCGTTTG-TAGTCCTATT
385 ATACCTGTTGTGCTTGATTTATGTGAAACAAATAATGTAAAGAAGAGGCGTTTGTTA-TCCAACG
* * * * * *
854349 GTTAGGATAATTGCCTTACAAGCAATACACCCGGGTTTGAGTCCCAGCAAATGAAATTACT-ATT
449 GTTAGGATAATTGCCTTACAAGCAAAACACCCGGGTTCGACTCCCAACAAAAGAAATTA-TGATA
* * *
854413 GTAAAAAATTAAGGGGAAAATTTGAAAAA-TAAAAAAAATAGTATTTATATACATTTTGTGCTTG
513 GTAAAAAATTAAGGGGAAAATTTGAAAAAGT---AAAAAGAGTA-GTATATACATGTTGTGCTTG
* * * *** *
854477 ATAAAATGAAACAAATAGTGT-A-AAGAGTAGTTTTTATTCCAATGGTTAGGATGATTGCCTTCC
574 ATAAAATGAAACAAATAGTGTAATAAGAGGAGTTTGTAGTCCAACAATTAGGATAATTGCCTTCC
** *
854540 AAGAAATAGACTCT-AGTTCGACTTGCTG-CAAATGCAATTACAATAGT
639 AAGAAATAGAC-CTGAGTTCGAC-T-CTGACAAACACAATTACAATAGA
* * * * *
854587 AAAATATTAAGTGGAAAAT-TTAGAAAAGTAAGACGATTAGCGTATATC-TTTTGTTCTTAATTA
1 AAAAAATTAAG-GGAAAATGTT-GAAAAGTAAAACGAGTAGCGTATA-CATGTTATTCTTAATTA
* *
854650 TGTGAAACGAATACTATAAAGAAGAGGCGTTTGGAGTCCAACTGTTAGGATAAATT-CCTTCCAA
63 TGTGAAA-AAATACTATAAAGAAGAGGCGTTTGGAGTCCAACTGTTAGGATAAATTGACTTCCAA
* * * * * *
854714 GCAATAGGCCCGATTTTGACTTATCAAAAACGCAATTACGATTGTAAAAAGTTCAGGGGAAAATT
127 GCAATAGACCCGAGTTCGACTCATCAAAAACGCAATAACGATTGTAAAAAATT-AGGGGAAAATT
* * * *
854779 TTGAAAAGTAAAACAAATAGTATATACCT-TTCG-TGTTGATTATGTGAAACAAATAGTGTAAGA
191 TTGAAAAGTAAAACGAGTAGTATATACGTGTT-GTTCTTGATTATGTGAAACAAATAGTGTAAG-
* ** * * * *
854842 AAGGGGTGTTTTTAGTTCAACGGTTAGGATGATTGCCTTCCAAGCAATAAACCCGGGTTCGACTC
254 AAGAGGAATTTATAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTC
* * * * * * **
854907 ACTGCAAATGCAATTACAATAGT-AAAATATTAAGGGGAGAATTCTGAAATTTAAAACGAATA
319 TCTGCAAATGCAATTTCGATAGTAAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAATA
854969 ATGTTCAATA
Statistics
Matches: 1416, Mismatches: 284, Indels: 111
0.78 0.16 0.06
Matches are distributed among these distances:
681 36 0.03
682 54 0.04
683 130 0.09
684 29 0.02
685 134 0.09
686 147 0.10
687 351 0.25
688 304 0.21
689 146 0.10
690 80 0.06
691 5 0.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.30
Consensus pattern (684 bp):
AAAAAATTAAGGGAAAATGTTGAAAAGTAAAACGAGTAGCGTATACATGTTATTCTTAATTATGT
GAAAAAATACTATAAAGAAGAGGCGTTTGGAGTCCAACTGTTAGGATAAATTGACTTCCAAGCAA
TAGACCCGAGTTCGACTCATCAAAAACGCAATAACGATTGTAAAAAATTAGGGGAAAATTTTGAA
AAGTAAAACGAGTAGTATATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAGAAGAGGA
ATTTATAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCTCTGCAA
ATGCAATTTCGATAGTAAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACGAATAGTTTATACCT
GTTGTGCTTGATTTATGTGAAACAAATAATGTAAAGAAGAGGCGTTTGTTATCCAACGGTTAGGA
TAATTGCCTTACAAGCAAAACACCCGGGTTCGACTCCCAACAAAAGAAATTATGATAGTAAAAAA
TTAAGGGGAAAATTTGAAAAAGTAAAAAGAGTAGTATATACATGTTGTGCTTGATAAAATGAAAC
AAATAGTGTAATAAGAGGAGTTTGTAGTCCAACAATTAGGATAATTGCCTTCCAAGAAATAGACC
TGAGTTCGACTCTGACAAACACAATTACAATAGA
Found at i:855638 original size:172 final size:170
Alignment explanation
Indices: 855294--855734 Score: 528
Period size: 171 Copynumber: 2.6 Consensus size: 170
855284 AGAATTAAGG
* ** * * * **
855294 GATAGTAAAAAATTGAGGGAAAA--TTGAAAAGTAAAACGAAAAGTGTATACCTTTTGTGCTCAA
1 GATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGA
* * * * * *
855357 TTATGTAAAAGGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTACCTCTC
66 TTATGTGAAACGAATAGTGTAAAGAAGAGGC-ATTATAATCCAACGATTAGGATAATTACCTCTC
**
855422 AAGCAATAGACCCAGGTTCGACTCCCAACAAATGCAACTAC
130 AAGCAATAGACCCAGGTTCGACTCCCAACAAACACAACTAC
* *
855463 GATAGTAAAAAATTTAAGGGGAAAATTTTAAAAAGTAAAATGAGTAGTGTATACATGTTGTTCTT
1 GATAGTAAAAAA-TTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTT
* * *
855528 GATTATGTGAAATGAATAGTGTAAAGAAGAGGCATTATAATCCAACGATTATGATAATTTCCT-T
64 GATTATGTGAAACGAATAGTGTAAAGAAGAGGCATTATAATCCAACGATTAGGATAATTACCTCT
** ** *
855592 CCAAGCAATAGACCTGGGTTCGACTCCCGGCAAACACAATTAC
129 -CAAGCAATAGACCCAGGTTCGACTCCCAACAAACACAACTAC
** *
855635 GATAGTAAAAAATTAAAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCCTG
1 GATAGTAAAAAATT-AAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTG
* * *
855700 ATTATGTGAAACAAATAGTTTAAAGAGGAGGCATT
65 ATTATGTGAAACGAATAGTGTAAAGAAGAGGCATT
855735 TGTAGTCCAA
Statistics
Matches: 232, Mismatches: 34, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
169 12 0.05
170 3 0.01
171 84 0.36
172 73 0.31
173 60 0.26
ACGTcount: A:0.40, C:0.12, G:0.21, T:0.27
Consensus pattern (170 bp):
GATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGA
TTATGTGAAACGAATAGTGTAAAGAAGAGGCATTATAATCCAACGATTAGGATAATTACCTCTCA
AGCAATAGACCCAGGTTCGACTCCCAACAAACACAACTAC
Found at i:855762 original size:172 final size:172
Alignment explanation
Indices: 855294--855784 Score: 566
Period size: 172 Copynumber: 2.9 Consensus size: 172
855284 AGAATTAAGG
* ** * * *
855294 GATAGTAAAAAATT-GAGGGAAAA--TTGAAAAGTAAAACGAAAAGTGTATACCTTTTG-TGCTC
1 GATAGTAAAAAATTAAAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCCT-
* * * * *
855355 AATTATGTAAAAGGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTACC-T
65 GATTATGTGAAACGAATAGTGTAAAGAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTTCCTT
**
855419 CTCAAGCAATAGACCCAGGTTCGACTCCCAACAAATGCAACTAC
130 C-CAAGCAATAGACCCAGGTTCGACTCCCAACAAACACAACTAC
* * * *
855463 GATAGTAAAAAATTTAAGGGGAAAATTTTAAAAAGTAAAATGAGTAGTGTATACATGTTGTTCTT
1 GATAGTAAAAAA-TTAAAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCCT
* * * * *
855528 GATTATGTGAAATGAATAGTGTAAAGAAGAGGCA-TTATAATCCAACGATTATGATAATTTCCTT
65 GATTATGTGAAACGAATAGTGTAAAGAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTTCCTT
** ** *
855592 CCAAGCAATAGACCTGGGTTCGACTCCCGGCAAACACAATTAC
130 CCAAGCAATAGACCCAGGTTCGACTCCCAACAAACACAACTAC
**
855635 GATAGTAAAAAATTAAAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCCTG
1 GATAGTAAAAAATTAAAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCCTG
* * * * *
855700 ATTATGTGAAACAAATAGTTTAAAGAGGAGGCATTTGTAGTCCAATGGGTT-GGATGATTTCCTT
66 ATTATGTGAAACGAATAGTGTAAAGAAGAGGCATTTGTAGTCCAA-CGGTTAGGATAATTTCCTT
*
855764 CCTAGCAATAGACTCC-GGTTC
130 CCAAGCAATAGAC-CCAGGTTC
855785 AACTTGCTGC
Statistics
Matches: 269, Mismatches: 44, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
169 12 0.04
170 2 0.01
171 83 0.31
172 107 0.40
173 63 0.23
174 2 0.01
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (172 bp):
GATAGTAAAAAATTAAAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCCTG
ATTATGTGAAACGAATAGTGTAAAGAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTTCCTTC
CAAGCAATAGACCCAGGTTCGACTCCCAACAAACACAACTAC
Found at i:863811 original size:11 final size:10
Alignment explanation
Indices: 863795--863824 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
863785 CCCACTTTGT
863795 AAAAAAAAGA
1 AAAAAAAAGA
863805 AAAAAAAAGA
1 AAAAAAAAGA
863815 AAAAATAAAG
1 AAAAA-AAAG
863825 TTGTGAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 15 0.79
11 4 0.21
ACGTcount: A:0.87, C:0.00, G:0.10, T:0.03
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:875214 original size:169 final size:166
Alignment explanation
Indices: 874727--875317 Score: 488
Period size: 171 Copynumber: 3.5 Consensus size: 166
874717 AAATTAAAAT
* * * *
874727 AGTAAAAAATTAA-GGAAAATTTGGTAAAGTAAAACGATTAG-CGTTATACCTTTTGTTCTTGAT
1 AGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAAC-A--AGTCATTATA-CATTTGTTCTTGAT
* * * ** *
874790 TATGTGAAACGAATACTGTAAAGAAGAGGCGCTTGTAGTCCAACTATTAGGATAACTT-CCTTGC
62 TATGTGAAACAAATAGTGTAAAG-AGAGGCGTTTGTAGTCCAACGGTTAGGATAA-TTGCCTTCC
* * * * * * *
874854 AAGCAATAGGCTCGGGTTTGTCTTCTAGAAAATAGAATTGCGAT
125 AAGCAATAGACTCGGGTTCGAC-TCCAGTAAAT-GAATTACGAA
* * * * * *
874898 TGT-AAAAATTATGGAGAAATTTTTGAAAAGTAGAACAAAT-AGTATATAACATTTGTGCTTGAT
1 AGTAAAAAATTAAGG-GAAAATTTTGAAAAGTAAAACAAGTCA-T-TAT-ACATTTGTTCTTGAT
* * * **
874961 TATGTGAAACAAATAGTGTAAAAAAGAGGCGTTTGTAGTTCAACGGTTAGGATGATTGCCTTTTA
62 TATGTGAAACAAATAGTGT-AAAGAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCA
* * * *
875026 AGCAATAGACTTGGGTTCGACTGCGAGTAAATGAATTATGAG
126 AGCAATAGACTCGGGTTCGACT-CCAGTAAATGAATTACGAA
* *
875068 AGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACAAGTCATGTATACGTCTTGTTCTAGATTA
1 AGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACAAGTCAT-TATACAT-TTGTTCTTGATTA
* * * *
875133 TGTGAAACAAATAGTGTAAAGTGAGACATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGT
64 TGTGAAACAAATAGTGTAAAGAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGC
* * * *
875198 AATAGACCCGGGTTCGACTCCCGTCAAACGCAATTACAAA
129 AATAGACTCGGGTTCGACTCCAGT-AAATG-AATTACGAA
* * *
875238 AGTAAAAAACTTAAGGGGAAAAATTTAAAAAGT---A-AA---A-TATACGTGTTGTTCTTGATT
1 AGTAAAAAA-TTAA-GGGAAAATTTTGAAAAGTAAAACAAGTCATTATACAT-TTGTTCTTGATT
*
875295 ATGTGAAACAAGTAGTGTAAAGA
63 ATGTGAAACAAATAGTGTAAAGA
875318 CCTCGGTTCG
Statistics
Matches: 343, Mismatches: 61, Indels: 40
0.77 0.14 0.09
Matches are distributed among these distances:
163 39 0.11
165 1 0.00
168 5 0.01
169 65 0.19
170 90 0.26
171 106 0.31
172 37 0.11
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.30
Consensus pattern (166 bp):
AGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACAAGTCATTATACATTTGTTCTTGATTATG
TGAAACAAATAGTGTAAAGAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAA
TAGACTCGGGTTCGACTCCAGTAAATGAATTACGAA
Found at i:876041 original size:343 final size:343
Alignment explanation
Indices: 875389--881139 Score: 1813
Period size: 343 Copynumber: 16.7 Consensus size: 343
875379 AAATAAACCA
* * * *
875389 AATAGTGTATACCTTTTGTGCTTGATTATGAGAAGTGAATAGTGTAAAGAAGAGGCGTTTGTTGT
1 AATAGTGTATACC-TTTGTGCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCATTTGTAGT
* * * * *
875454 CTAACAGTTATGATAATTGCCTTCCAAGCAATGGACCTGGGTTCGACTTGCTGCAAATACAATTA
65 CCAACAGTTAGGATAATTGCCTTCCAAGCAATAGACCTGGGTTCGACTTCCTGCAAATGCAATTA
* * * * * * * *
875519 CAATAGTAAAATATTAAGGGAAAATTTTAAAAATTGAAACGAATAGTGTAAACCATTTGTGCTTG
130 CAATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACCTTTTGTTCTTG
* * * * *
875584 ATTATGTGAAATGAATAGTGTAAAGAAGAGACGTTTGTAATCCAACGGTTAGGATAAGTGCCTTC
195 ATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTTCCTTC
* * *** * *
875649 CAAA-CAATAGACCCGGGTTT-GACAATCAGCAAAC-GCAATCACGATAGTAAAAATTTAAGGGG
260 CAAAGAAATAGACCC-GATTTCGACTCCCGGCAAACAG-AATCACGATAGTAAAAAATTAAGGGG
*
875711 AAAATTTTGAAAAGTAAAATG
323 AAAATTTTAAAAAGTAAAATG
* * * * * *
875732 AATAGTGTTTACCTTTCGTGCTTGATTACGTGAAACGAATAGTATAAAGAATAGGTATTTGTAGT
1 AATAGTGTATACCTTT-GTGCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCATTTGTAGT
* * * * *
875797 CCAACAGTTA-CATTAATTACCTTCCATGCAATAGACCTGGGTTCCAC-TCCCGACAAATG-AAT
65 CCAACAGTTAGGA-TAATTGCCTTCCAAGCAATAGACCTGGGTTCGACTTCCTG-CAAATGCAAT
* * *
875859 AACGAAT-GTAAAAAATTAAGGGCAAATTTTTGAAAAGTAAAACGAGTAGTGTATA-CTTGCTGT
128 TAC-AATAGTAAAAAATTAAGGG-AAAATTTTGAAAAGTAAAACGAGTAGTGTATACCTT-TTGT
* * *
875922 TCTTGATTATGTGAAA-GAAATAGTGTGAATAAGAGGCGTTTGTAGTCCAACGGTTAGGAAAATT
190 TCTTGATTATGTGAAACG-AATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * *
875986 TCC-TCCAAAGAAATAGACCCGATTTCGACTCCCGGCAAACAGAGTGACAATAGTAAAAAATTAT
254 TCCTTCCAAAGAAATAGACCCGATTTCGACTCCCGGCAAACAGAATCACGATAGTAAAAAATTAA
*
876050 GGGGAAAATTTTTAAAAAATAAAACATG
319 GGGGAAAA-TTTTAAAAAGT-AAA-ATG
* * * * * *
876078 --TAGTGTATACGTGTTGTTCTTGATTATGTGAAATAAATAGTGTAAAGATGAGGCGTTTGTTGT
1 AATAGTGTATACCT-TTGTGCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCATTTGTAGT
* * * * *
876141 CCAACGGTTAGGATAATTGCCTTCCAA-TAATATA-CTCGTGTTCAAC-TCCTGACAAATGCAAT
65 CCAACAGTTAGGATAATTGCCTTCCAAGCAATAGACCT-GGGTTCGACTTCCTG-CAAATGCAAT
* * * **
876203 TACGATGGTAAAAAATTAAGGAGAAAATTTAGAAAAGTAAAACGAGTAGTGTATATGTTTTGTTC
128 TACAATAGTAAAAAATTAAGG-GAAAATTTTGAAAAGTAAAACGAGTAGTGTATACCTTTTGTTC
* * * * **
876268 TTGTTTATGTGAAACAAATAGCT-TAAATAAGAGGCGTTTTTAGTCCAACAATTAGGATAATTTC
192 TTGATTATGTGAAACGAATAG-TGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTTC
* * ** * * * * * *
876332 CTTCC-AAGCAAA-AGACTCTAGCTCGCCTCCCGGTAAATACAATTACGATAGTAAAACAAATAA
256 CTTCCAAAG-AAATAGACCCGATTTCGACTCCCGGCAAACAGAATCACGATAGTAAAA-AATTAA
* *
876395 GGGGGAAATTTTTAAAAGT-AAATG
319 GGGGAAAATTTTAAAAAGTAAAATG
* * * *
876419 TATACATGT-TA---TT-T--TTGATTATGTGAAA-GAAATAGTTTAAAGAAGAGGTATTTGTAG
1 AATA-GTGTATACCTTTGTGCTTGATTATGTGAAATG-AATAGTGTAAAGAAGAGGCATTTGTAG
* * * *
876476 TCCAACGGTTAGGATGATTGGCTTCCAAGCAATAGACTCT-GGTTCGACTTGCTGCAAATGCAAT
64 TCCAACAGTTAGGATAATTGCCTTCCAAGCAATAGAC-CTGGGTTCGACTTCCTGCAAATGCAAT
* * * *
876540 TACAATAGTAAAAAATTAAGGGGAAACTTTGGAAAAGTAAAACGATTAGCGTTATACCTTTTGTT
128 TACAATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAGTG-TATACCTTTTGTT
* ** * * *
876605 ATTGATTATGTGAAACGAATTCTATAAAGAAGAGGCGCTTGTAGTCCAACTGTTAGGATAATTGT
191 CTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT-T
* * * * * * * *
876670 -CTTCC-TAGCAATAGACCCAAGTTT-GACTCACTGC--ACATGCAATTACAATAGTAAAATATT
255 CCTTCCAAAGAAATAGACCCGA-TTTCGACTCCCGGCAAACA-G-AATCACGATAGTAAAAAATT
* * ** *
876730 AAGGGGAGAATTTTGAAATTTAAAACG
317 AAGGGGAAAATTTTAAAAAGTAAAATG
* ** * * * * * *** * **
876757 AATAATGTTCAATAGATTTCTTTCTTTATTTTTTCCTGGCTTCTTAATCA-T-TAATTAAGA---
1 AATAGTG-T--ATACCTTT-GTGCTTGA--TTAT-GT-G-AAATGAAT-AGTGTAAAGAAGAGGC
* ** * ** * * ** * * *
876817 ATTT-TAATATTAATA-AAAGG-TAA-TGGC-T--AGGC--T-G-GGTGGAATAGTCGA--GCCA
56 ATTTGTAGT-CCAACAGTTAGGATAATTGCCTTCCAAGCAATAGACCTGG-GT--TCGACTTCCT
* * * * * * *** *
876869 G-AAA---AAATATATTAGATATAAAA-TGAGTTGAAACGA-AAGGAAAA-TAGAATAC-ATTTT
117 GCAAATGCAATTACAATAG-TAAAAAATTAAG-GGAAA--ATTTTGAAAAGTA-AA-ACGA--GT
** ** * * * * * * * * **
876926 A-AATATCACCTGATTCCTTCAAT-ATACATAGAGTAATCAAATTGATTCCTACCTTAAGCATTG
174 AGTGTAT-ACCT--TTTGTTC-TTGAT-TAT-GTG-AAACGAA-T-AGT-GTA----AAGAAGAG
* ** * * * * * * ** ** * ** *
876989 GATC-TCATGTCTCAGTTAAGAGGGGTCATGGAAAGAACGTACTGTTCTTAA-TTATGTGAAACA
225 G--CGT--T-TGT-AGTCCA-A-CGGTTA-GG--ATAA-TTTC-CTTCCAAAGAAAT-AGACCCG
** * ** ** * * * * *
877052 AAATAGTGT-AAGTG-TAA-AGAATTAAGGGATAGTAAAAAATCAA-GGGAAAA--TTGAAAAGT
276 ATTTCGACTCCCG-GCAAACAGAA-TCA-CGATAGTAAAAAATTAAGGGGAAAATTTTAAAAAGT
*
877111 AAAACG
338 AAAATG
* ** * * ** *
877117 AAAAGTGTATACCTTTCGTGCTCAATTATGTGAAAGGAACAGTGTAAAGAAGAGGTGTTTGTATT
1 AATAGTGTATACCTTT-GTGCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCATTTGTAGT
* * * *** * *
877182 CCAACAGTTAGGATAATTACCTTCCAAGCAATAGACC-AGGTTCGACTCCCAATAAATACAACTA
65 CCAACAGTTAGGATAATTGCCTTCCAAGCAATAGACCTGGGTTCGACTTCCTGCAAATGCAATTA
* * * * *
877246 CGATAGTAAAAAAGTTAAGGGGAAATTTTAAAAAAGTAAAACGAGTAGTGTATACATGTTGTTCT
130 CAATAGTAAAAAA-TTAAGGGAAAATTTT-GAAAAGTAAAACGAGTAGTGTATACCTTTTGTTCT
* * * * *
877311 TGATTATGTGAAATGAATAGTGTAAATAAGAGGCATTTGTAGTCCAACGATTATGATAATTTCCT
193 TGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTTCCT
* ** * * * * *
877376 TCC-AAGCAATAGACCCGGGTTCGACTCCCGGCAAACACAATTACGATTGTTAAAAATCAA-GGG
258 TCCAAAGAAATAGACCCGATTTCGACTCCCGGCAAACAGAATCACGATAGTAAAAAATTAAGGGG
* *
877439 AAAATTTTGAAAAGTAAAACG
323 AAAATTTTAAAAAGTAAAATG
* ** * * ** * * *
877460 AGTAGTGTATATGTGTTGTTCTTGATTATTTGAAACAAATAGTTTACAGAAGAGGCCTTTGTAGT
1 AATAGTGTATACCT-TTGTGCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCATTTGTAGT
** * * * * * * * * *
877525 CCAATGGTTTGGATAATTGCCATCCATGCAAT-GAACCGGGGTTTGAC-TCTCGGTAAATGTAGT
65 CCAACAGTTAGGATAATTGCCTTCCAAGCAATAG-ACCTGGGTTCGACTTC-CTGCAAATGCAAT
** * * *
877588 TATGATA-TTAAAAATTAA-GAAGAAATTTTGAAAAGTAAAACGAATAGTGTATACCTTTCATG-
128 TACAATAGTAAAAAATTAAGGGA-AAATTTTGAAAAGTAAAACGAGTAGTGTATACCTTT--TGT
* * * * *
877650 T-TTGATTATGTGTAACGAA-ATGTGTAAAGAAGAGGAGTTAGTAGTCTAACAGTTAGGATAATT
190 TCTTGATTATGTGAAACGAATA-GTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * * * * * * * * *
877713 ACCTTTC-AAGCAATAGTATCAG-GTTCAACTCACGACAAAC-GTAATTACTATAGTAAAAAATT
254 TCCTTCCAAAGAAATAG-ACCCGATTTCGACTCCCGGCAAACAG-AATCACGATAGTAAAAAATT
* * *
877775 AAGGAGAAAATTTTGAAAAGTAAAACG
317 AAGGGGAAAATTTTAAAAAGTAAAATG
** * * *
877802 AGA-AGTGTATAGGTGTTGTTCTTGATTATGTGAAAAT-AATAGTGTAAAAAAGAGGCGTTTGTA
1 A-ATAGTGTATACCT-TTGTGCTTGATTATGTG-AAATGAATAGTGTAAAGAAGAGGCATTTGTA
* * * * * * * * *
877865 GTCAAACAATTAGGATAATTGCCTGCTAAGCAGTAGACCCGGGTTCGAC-TCGCGGAAAATGAAA
63 GTCCAACAGTTAGGATAATTGCCTTCCAAGCAATAGACCTGGGTTCGACTTC-CTGCAAATGCAA
*** * * * * * *
877929 TTTTGATAGTAAAAAATTAAGTGGAAAATTTTGAAAAGTAAAACTAATAATTTTTACCTTTTGTG
127 TTACAATAGTAAAAAATTAAG-GGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACCTTTTGTT
* * * * * * * *** * *
877994 CTTCATTATGTGAAACTAAAACAT-TAAAGAGGAGGCATTTGTAGTCCTATTTTTAGAATAATTG
191 CTTGATTATGTGAAACGAATA-GTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTT
* * ** * * ** * ** *
878058 CCTTCC-TAGCAATAGACCC-ATGTTTAAGTCTCGAAAAAC-GAAATTAAAATTGTAAAAAATTA
255 CCTTCCAAAGAAATAGACCCGAT-TTCGACTCCCGGCAAACAG-AATCACGATAGTAAAAAATTA
** * *
878120 ACTGAAAAATTTTGAAAAAATTAAAGGAAATG
318 AGGGGAAAATTTT--AAAAAGT--A--AAATG
* * * * ** **
878152 ATATATATATATATATACCTTTTGTCCTTGATTATATGAAACAAATAGTGTAAAGAAGAGGTGTT
1 ----A-ATA-GTGTATACC-TTTGTGCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCATT
* * * * * * *
878217 TGTAGTCCAACGGTTAGGATGATTACGTTCCAAGCAATAGACTTGGGTTCGACTTGCTGCAAATA
59 TGTAGTCCAACAGTTAGGATAATTGCCTTCCAAGCAATAGACCTGGGTTCGACTTCCTGCAAATG
* * *
878282 CAATTACAATAGTAAAAAATTAA-GGAAAATTTGGTAAAGTAAAACGATTAACGT-TATACCTTT
124 CAATTACAATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACGAGT-A-GTGTATACCTTT
* * * * * ** *
878345 TGTGCTTAATTATGTTAAACGAATATTGTAAAGAAGAGGC-TCTTGTAGTGCAACTATTATGATA
187 TGTTCTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGT-TTGTAGTCCAACGGTTAGGATA
* * * * * ** * *** * * *
878409 ATTGCCTTGC-AAGCAATAGGCTCGGGTTGGACTTATGG-AAA-ATGCAATTAGGATTGTAAAAA
251 ATTTCCTTCCAAAGAAATAGACCCGATTTCGACTCCCGGCAAACA-G-AATCACGATAGTAAAAA
* * * * *
878471 A-TAATGGAGAAATTTTTGAAAAGTAGAACG
314 ATTAA-GGGGAAAATTTTAAAAAGTAAAATG
* * ** * *
878501 AATAGTATATAACTTTTGTGCTTGATTATGTGAAACAAATAGTGTAAAAAAAGAGGCGTTTGTAG
1 AATAGTGTAT-ACCTTTGTGCTTGATTATGTGAAATGAATAGTGT-AAAGAAGAGGCATTTGTAG
* * * * * * * *
878566 TTCAACGGTTAGGATGATTGCCTTTCAAGCAATAGACCTGGGTTCGACTGCCAGTAAATG-AAGT
64 TCCAACAGTTAGGATAATTGCCTTCCAAGCAATAGACCTGGGTTCGACTTCCTGCAAATGCAATT
* * * * * * *
878630 ACGATAGTAAAAAATTAAGGGAAAATTTTGATAAGTAAAACGAGTCGTGTATACGTCTAGTTCTA
129 ACAATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACCTTTTGTTCTT
* * * * ** * ** *
878695 GATTATGTGAAACAAATAGAGTAAAGATGAGGTGTTTGTCTTCCCACCATTAGGATAATTGCCTT
194 GATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTTCCTT
* * * * * * *
878760 CC--AGTTAATAAACTCGGTTTC-A------ACAAGC-GAA--A--A-AGGT----AATT----C
259 CCAAAG-AAATAGACCCGATTTCGACTCCCGGCAAACAGAATCACGATA-GTAAAAAATTAAGGG
* * * **
878802 TAAAA-GTAAAAAAGTAAAACA
322 GAAAATTTTAAAAAGTAAAATG
* * * * **
878823 AATAGTGTTTACCATTTGTGCTTGATTATGTTAAACGAATACTGTAAAGAAGAGGTGTTTGTAGT
1 AATAGTGTATACC-TTTGTGCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCATTTGTAGT
* ** * * * ** * ** *
878888 CTAATTGTTAGGATAATTTCCTTCCAAGCAATAGACCCGAGTTTTAGTTCCAACAAAT-TAATTA
65 CCAACAGTTAGGATAATTGCCTTCCAAGCAATAGACCTGGGTTCGACTTCCTGCAAATGCAATTA
*** * * * * **
878952 TTGTAGTGAAAAATTAAGGGGAAATTTTTGAAAAGTAAAACGAGTAATGTATACATTTCATTCTT
130 CAATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACCTTTTGTTCTT
* * * * **
879017 CATTATGTGGAAC-ATATAGTGTAAATAAGAGGCGTTTGTAGTGCAACAATTAGGATAATTTCCT
194 GATTATGTGAAACGA-ATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTTCCT
* ** * * * *
879081 TCC-AAGAAATAGACCAGGGTT-GACTCTCGACGAACACAATCACGATAGTAAAAAATTAAGGGG
258 TCCAAAGAAATAGACCCGATTTCGACTCCCGGCAAACAGAATCACGATAGTAAAAAATTAAGGGG
* * * *
879144 GAAATATTGAAAAGTAAAACG
323 AAAATTTTAAAAAGTAAAATG
* * * * * * * * *
879165 AGTAGTGTATACTTGTTATTCTTAATTATGTGAAA-AAAGTAGTTTAAACAAAAGGCATTTGTAG
1 AATAGTGTATACCT-TTGTGCTTGATTATGTGAAATGAA-TAGTGTAAAGAAGAGGCATTTGTAG
* * * ** * ** * ** *
879229 TCTAACGGTTAGCATAATTGCCTTCCAAATAATATACCTGACTTCGAC-TCCTGGTAAACACATT
64 TCCAACAGTTAGGATAATTGCCTTCCAAGCAATAGACCTGGGTTCGACTTCCT-GCAAATGCAAT
* ** *
879293 TACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGT-AAA-GAAGTAGTGTATAGGTATTGTT
128 TACAATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACG-AGTAGTGTATACCTTTTGTT
* * ** *
879356 CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGTCGTTTGTAGTCCAACCATTAGGATAATTGC
191 CTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTTC
* * * * * * ** * *
879421 ATT-CAAAGTATTAGACCCGGGTTT-GACTCAC-G-AAAAATGCAATTTCAACAGTAAAAAATTA
256 CTTCCAAAGAAATAGACCC-GATTTCGACTCCCGGCAAACA-G-AATCACGATAGTAAAAAATTA
* * *
879482 AGTGGAAAATTTTGAAAAGTAAAACG
318 AGGGGAAAATTTTAAAAAGTAAAATG
* * * * * *
879508 AATAGTTTTTACCTTTTGTGCTTGATTATGTGAAACT-AATACTATAAAGAAGAGGCGTTTGAAG
1 AATAGTGTATACC-TTTGTGCTTGATTATGTGAAA-TGAATAGTGTAAAGAAGAGGCATTTGTAG
** * * * * *
879572 T-CATATTGTTAGGATAATTTCTTTCCAAGCAATAGA-CTCGGGTTCAAC-TCCTGTCAAACGAA
64 TCCA-ACAGTTAGGATAATTGCCTTCCAAGCAATAGACCT-GGGTTCGACTTCCTG-CAAATGCA
* * * * * ** * *
879634 ATTACGATTGTAAAACATTAATGGAAAATTTTTGAAAAAATAAAGAAAATAGTATATATATACCT
126 ATTACAATAGTAAAAAATTAAGGGAAAA-TTTTG-AAAAGT--A-AAACGAGTA-GTGTATACCT
* ** * * * *
879699 TTTGTGCTTGATTACATGAAACAAATAGTGTAAGGAAGAGGCGTTTTTAATCCAACGGTTAGGAT
185 TTTGTTCTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT
* ** * * * * ** * * * * *
879764 GATTGACTTCC-TAGCAATAGACTCGAGTTCGACTTGCTGCAAATACAATTACAATAGTAAAAAA
250 AATTTCCTTCCAAAGAAATAGACCCGATTTCGACTCCCGGCAAACAGAATCACGATAGT-AAAAA
* ** * *
879828 ATTAACGGGAAAATTTGGAAATGTAAAACG
314 ATTAAGGGGAAAATTTTAAAAAGTAAAATG
* * * * * *
879858 ATTAGCGTATACCTTTTGTGATTGATTATGTGAGATGAATACTATAAAG-A-A-G-A---G--G-
1 AATAGTGTATACC-TTTGTGCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCATTTGTAGT
* ** * *
879913 ----C-GTT----T-A---CCTTCCAAGAAATA-AGCCCAGGTTTGACTT-ATGGCAAACT-CAA
65 CCAACAGTTAGGATAATTGCCTTCCAAGCAATAGA-CCTGGGTTCGACTTCCT-GCAAA-TGCAA
* * * ** * * * *
879962 TTACGATTGTAAAAAGTTTTGGGGAAATTTTTGAAAAGTAAAA-GAAATAGTATATACTTTTTGT
127 TTACAATAGTAAAAA-ATTAAGGGAAAATTTTGAAAAGTAAAACG-AGTAGTGTATACCTTTTGT
* * ** * * * * *
880026 GCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGTTGTTTTTCGTTCAATGGTTAGGATGATTT
190 TCTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTT
* * * ** ** * * * * *
880091 TCTTTC-AAGAAATATACTTGGGTTCGACTTCCGGTAAATA-AATTACGATAGCAAAAAATTAAG
255 CCTTCCAAAGAAATAGACCCGATTTCGACTCCCGGCAAACAGAATCACGATAGTAAAAAATTAAG
* *
880154 GGGAAAATTTTGAAAAGTAAAACG
320 GGGAAAATTTTAAAAAGTAAAATG
* * * * *
880178 AATAGTTTTTACCTTTTGTGCTTGATTATGTGAAACT-AATACTGTAAAGAAGAGGCGTTT-TTG
1 AATAGTGTATACC-TTTGTGCTTGATTATGTGAAA-TGAATAGTGTAAAGAAGAGGCATTTGTAG
* ** * * * * * * * *
880241 TCCTATTGTTAGGATAATTTCCTTCAAAGCAATAGACTTGGGTTCAACTCCCTTCAAACGAAATT
64 TCCAACAGTTAGGATAATTGCCTTCCAAGCAATAGACCTGGGTTCGACTTCCTGCAAATGCAATT
* * * * * * * * **
880306 ACGATTGTAAAAAATTAAGGGGAAATTTTTGAAAAAATTAAAGA-AAATAATATATATATATATA
129 ACAATAGTAAAAAATTAA-GGGAAAATTTTG--AAAAGTAAA-ACGAGTAGTGTATACCT-T-T-
* * * * * * * * **
880370 TATATATATATATATATATATATATATCTTTTTCTCTTGATTATA-TG-AAACAA-ATAGTGTAA
187 TGT-TCT-T-GAT-TATGT-GA-A-A---------C--GA--ATAGTGTAAAGAAGA-GGCGTTT
* ** ** * * * * **
880432 ATAAGAGGCAA-TTTTAGTCCAACGGTTAGGATGATTGCCTTCC-AAGCATTAGACTCGGGTTCG
231 GT-AG-TCCAACGGTTAG---GA----TA--AT--TT-CCTTCCAAAGAAATAGACCCGATTTCG
** * * * * * * **
880495 ACTTGCTGCAAATACAATTAC-ATTAATAAAAAAATTAACGGGAAAATTTGGAAAAGTAAAATG
282 ACTCCCGGCAAACAGAATCACGA-TAGT-AAAAAATTAAGGGGAAAATTTTAAAAAGTAAAATG
* * * * * **
880558 ATTAGCGTATACCTTTTGTGCTTGATTATGTGAAATGAATACTATAAAAAAGAGGCGCTTGTAGT
1 AATAGTGTATACC-TTTGTGCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCATTTGTAGT
* * * * * * * *
880623 CCAACTGTTAGGATAATTGCCATCCAAGCAACAGGCCTGGGTTAGACTT-ATGGCAAACGCTATT
65 CCAACAGTTAGGATAATTGCCTTCCAAGCAATAGACCTGGGTTCGACTTCCT-GCAAATGCAATT
* * * * * * * * * * *
880687 ACGATTGTAAAAAGTTATGGGGAAATTTTTGAAAAGTAAAACAAATATTATATACTTTTTGTGCT
129 ACAATAGTAAAAAATTA-AGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACCTTTTGTTCT
* * * * *
880752 TGATTATGTGAAACAAATTGTGTAAAGAAGAGGCGTTTGTTGTTCAACGGTTAGGATAATTGCCT
193 TGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTTCCT
* ** * * ** * *
880817 TCC-AAGCAATAGACTTGAGTTCGACTCACAACAAACATAATTACGATAGTAAAAAACTTAAGGG
258 TCCAAAGAAATAGACCCGATTTCGACTCCCGGCAAACAGAATCACGATAGTAAAAAA-TTAAGGG
** *
880881 GAATTTTTTTAAAAGTAAAATG
322 GAAAATTTTAAAAAGTAAAATG
* * * * ** * **
880903 AGTATTGTATACGTCTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGATGAGGTGTTTGTAGT
1 AATAGTGTATACCT-TTGTGCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCATTTGTAGT
* * * ** * * * *
880968 CTAACGGTTAGGATAATTGGCTTCCAAGCAATAGACCCAGATTCAAC-TCCCGTCAAACGCAATT
65 CCAACAGTTAGGATAATTGCCTTCCAAGCAATAGACCTGGGTTCGACTTCCTG-CAAATGCAATT
* * * * * ** * *
881032 ACGAA-ATTAAAAAATTAAGGGGAAATTTTGAAAAGTAAAGA-GACTAATATATATGTGTTGTTA
129 AC-AATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAA-ACGAGTAGTGTATACCTTTTGTTC
* * *
881095 TTGATTATGTGAAA-TAAGTAGTGTAAATAAGAGGCGTTTGCAGTC
192 TTGATTATGTGAAACGAA-TAGTGTAAAGAAGAGGCGTTTGTAGTC
881140 TAATATGTAG
Statistics
Matches: 4035, Mismatches: 1019, Indels: 707
0.70 0.18 0.12
Matches are distributed among these distances:
320 72 0.02
321 93 0.02
322 248 0.06
323 12 0.00
324 1 0.00
326 6 0.00
327 46 0.01
328 16 0.00
329 2 0.00
330 1 0.00
331 5 0.00
333 4 0.00
334 4 0.00
335 6 0.00
336 81 0.02
337 111 0.03
338 119 0.03
339 14 0.00
340 11 0.00
341 179 0.04
342 452 0.11
343 711 0.18
344 594 0.15
345 209 0.05
346 20 0.00
347 8 0.00
348 25 0.01
349 107 0.03
350 93 0.02
351 12 0.00
352 14 0.00
353 20 0.00
354 43 0.01
355 116 0.03
356 120 0.03
357 29 0.01
358 17 0.00
359 6 0.00
360 24 0.01
361 7 0.00
362 25 0.01
363 27 0.01
364 13 0.00
365 15 0.00
366 13 0.00
367 17 0.00
368 17 0.00
369 7 0.00
370 1 0.00
371 1 0.00
372 4 0.00
373 3 0.00
374 1 0.00
375 3 0.00
376 2 0.00
377 3 0.00
378 34 0.01
379 29 0.01
380 84 0.02
381 78 0.02
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (343 bp):
AATAGTGTATACCTTTGTGCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCATTTGTAGTC
CAACAGTTAGGATAATTGCCTTCCAAGCAATAGACCTGGGTTCGACTTCCTGCAAATGCAATTAC
AATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACCTTTTGTTCTTGA
TTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTTCCTTCC
AAAGAAATAGACCCGATTTCGACTCCCGGCAAACAGAATCACGATAGTAAAAAATTAAGGGGAAA
ATTTTAAAAAGTAAAATG
Found at i:876662 original size:173 final size:171
Alignment explanation
Indices: 875389--878762 Score: 1457
Period size: 171 Copynumber: 19.5 Consensus size: 171
875379 AAATAAACCA
* * ** *
875389 AATAGTGTATACCTTTTGTGCTTGATTATGAGAAGTGAATAGTGTAAAGAAGAGGCGTTTGTTGT
1 AATAGTGTATACCTTTTGTTCTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGT
* * * * * *
875454 CTAACAGTTATGATAATTGCCTTCCAAGCAATGGACCTGGGTTCGACTTGCTGCAAATACAATTA
66 CCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCT-GGTTCGACTTCCTGCAAATGCAATTA
* * * *
875519 CAATAGTAAAATATTAA-GGGAAAATTTTAAAAATTGAAACG
130 CAATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACG
* * * * * *
875560 AATAGTGTAAACCATTTGTGCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGACGTTTGTAAT
1 AATAGTGTATACCTTTTGTTCTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGT
* * * * * * * *
875625 CCAACGGTTAGGATAAGTGCCTTCCAAACAATAGACCCGGGTTTGACAAT-CAGCAAACGCAATC
66 CCAACGGTTAGGATAATTGCCTTCCAAGCAATAGA-CCTGGTTCGAC-TTCCTGCAAATGCAATT
* * *
875689 ACGATAGTAAAAATTTAAGGGGAAAATTTTGAAAAGTAAAATG
129 ACAATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACG
* * * * * * **
875732 AATAGTGTTTACCTTTCGTGCTTGATTACGTGAAACGAATAGTATAAAGAATAGGTATTTGTAGT
1 AATAGTGTATACCTTTTGTTCTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGT
* * * * * *
875797 CCAACAGTTA-CATTAATTACCTTCCATGCAATAGACCTGGGTTCCAC-TCCCGACAAATG-AAT
66 CCAACGGTTAGGA-TAATTGCCTTCCAAGCAATAGACCT-GGTTCGACTTCCTG-CAAATGCAAT
* * *
875859 AACGAAT-GTAAAAAATTAAGGGCAAATTTTTGAAAAGTAAAACG
128 TAC-AATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACG
* * * *
875903 AGTAGTGTATA-CTTGCTGTTCTTGATTATGTGAAA-GAAATAGTGTGAATAAGAGGCGTTTGTA
1 AATAGTGTATACCTT-TTGTTCTTGATTATGTGAAACG-AATAGTGTAAAGAAGAGGCGTTTGTA
* * * * * * *
875966 GTCCAACGGTTAGGAAAATTTCC-TCCAAAGAAATAGACCCGATTTCGACTCCCGGCAAA--CAG
64 GTCCAACGGTTAGGATAATTGCCTTCC-AAGCAATAGACCTG-GTTCGACTTCCTGCAAATGCA-
* * * *
876028 AGTGACAATAGTAAAAAATTATGGGGAAAATTTTTAAAAAATAAAAC-
126 A-TTACAATAGTAAAAAATTAAGGGGAAAA-TTTTGAAAAGTAAAACG
* * * ** * *
876075 ATGTAGTGTATACGTGTTGTTCTTGATTATGTGAAATAAATAGTGTAAAGATGAGGCGTTTGTTG
1 A-ATAGTGTATACCTTTTGTTCTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAG
* * *
876140 TCCAACGGTTAGGATAATTGCCTTCCAA-TAATATA-CTCGTGTTCAAC-TCCTGACAAATGCAA
65 TCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCT-G-GTTCGACTTCCTG-CAAATGCAA
* * * *
876202 TTACGATGGTAAAAAATTAAGGAGAAAATTTAGAAAAGTAAAACG
127 TTACAATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACG
* ** * * * *
876247 AGTAGTGTATATGTTTTGTTCTTGTTTATGTGAAACAAATAGCT-TAAATAAGAGGCGTTTTTAG
1 AATAGTGTATACCTTTTGTTCTTGATTATGTGAAACGAATAG-TGTAAAGAAGAGGCGTTTGTAG
** * * * * * * * * *
876311 TCCAACAATTAGGATAATTTCCTTCCAAGCAAAAGACTCTAGCTCGCCTCCCGGTAAATACAATT
65 TCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGAC-CTGGTTCGACTTCCTGCAAATGCAATT
* * * *
876376 ACGATAGTAAAACAAATAAGGGGGAAATTTTTAAAAGT------
129 ACAATAGTAAAA-AATTAAGGGGAAAATTTTGAAAAGTAAAACG
* * * * * **
876414 AA-A-TGTATACATGTTATTTTTGATTATGTGAAA-GAAATAGTTTAAAGAAGAGGTATTTGTAG
1 AATAGTGTATACCTTTTGTTCTTGATTATGTGAAACG-AATAGTGTAAAGAAGAGGCGTTTGTAG
* * *
876476 TCCAACGGTTAGGATGATTGGCTTCCAAGCAATAGACTCTGGTTCGACTTGCTGCAAATGCAATT
65 TCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGAC-CTGGTTCGACTTCCTGCAAATGCAATT
* *
876541 ACAATAGTAAAAAATTAAGGGGAAACTTTGGAAAAGTAAAACG
129 ACAATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACG
* * * ** * *
876584 ATTAGCGTTATACCTTTTGTTATTGATTATGTGAAACGAATTCTATAAAGAAGAGGCGCTTGTAG
1 AATAGTG-TATACCTTTTGTTCTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAG
* * * ** * *
876649 TCCAACTGTTAGGATAATTGTCTTCCTAGCAATAGACCCAAGTTTGAC-TCACTGCACATGCAAT
65 TCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGA-CCTGGTTCGACTTC-CTGCAAATGCAAT
* * **
876713 TACAATAGTAAAATATTAAGGGGAGAATTTTGAAATTTAAAACG
128 TACAATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACG
* ** * * * *** * **
876757 AATAATGTTCAATAGATTTCT-TTCTTTATTTTTTCCTGGCTTCTTAATCA-T-TAATTAAGA--
1 AATAGTG-T--ATACCTTT-TGTTCTTGA--TTAT-GT-GAAAC-GAAT-AGTGTAAAGAAGAGG
* * ** **** * * ** * * * * *
876817 -ATTT-TAATATTAA-TAAAAGG-TAA-TGGC-T--AGGCTGGGTGGA-ATAG-TCGA--GCCAG
56 CGTTTGTAGT-CCAACGGTTAGGATAATTGCCTTCCAAGC--AATAGACCTGGTTCGACTTCCTG
* * * * * ** ***
876870 -AAA---AAATATATTAGATATAAAA-TGAGTTGAAACGA-AAGGAAAA-TAGAATAC-
118 CAAATGCAATTACAATAG-TAAAAAATTAAGGGGAAA--ATTTTGAAAAGTA-AA-ACG
* ** ** * * * * * * *
876921 ATTTTA-AATATCACCTGATTCCTTCAAT-ATACATAGAGTAATCAAATTGATTCCTACCTTAAG
1 A--ATAGTGTAT-ACCT--TTTGTTC-TTGAT-TAT-GTG-AAACGAA-T-AGT-GTA----AAG
* ** * ** * * * ** * * ** * **
876984 CATTGGATC-TCATGTCTCAGTTAAGAGGGGTCATGGAAAGAACGTACTGTTC--TTAAT-TATG
50 AAGAGG--CGT--T-TGT-AGTCCA-A-CGGTTA-GGATA-ATTG-CCT-TCCAAGCAATAGACC
*** * ** ** * * * *
877045 TGAAACAAAATAGTGTAAGTGTAAAGAATTA-AGGGATAGTAAAAAATCAA-GGGAAAA--TTGA
103 TGGTTCGACTTCCTGCAAATG----CAATTACA---ATAGTAAAAAATTAAGGGGAAAATTTTGA
877106 AAAGTAAAACG
161 AAAGTAAAACG
* * * ** * * * *
877117 AAAAGTGTATACCTTTCGTGCTCAATTATGTGAAAGGAACAGTGTAAAGAAGAGGTGTTTGTATT
1 AATAGTGTATACCTTTTGTTCTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGT
* * * * *** * *
877182 CCAACAGTTAGGATAATTACCTTCCAAGCAATAGACCAGGTTCGACTCCCAATAAATACAACTAC
66 CCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCTGGTTCGACTTCCTGCAAATGCAATTAC
* *
877247 GATAGTAAAAAAGTTAAGGGG-AAATTTTAAAAAAGTAAAACG
131 AATAGTAAAAAA-TTAAGGGGAAAATTTT-GAAAAGTAAAACG
* * * * * *
877289 AGTAGTGTATACATGTTGTTCTTGATTATGTGAAATGAATAGTGTAAATAAGAGGCATTTGTAGT
1 AATAGTGTATACCTTTTGTTCTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGT
* * * * * * **
877354 CCAACGATTATGATAATTTCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACACAATTA
66 CCAACGGTTAGGATAATTGCCTTCCAAGCAATAGA-CCTGGTTCGACTTCCTGCAAATGCAATTA
* * * *
877419 CGATTGTTAAAAATCAA-GGGAAAATTTTGAAAAGTAAAACG
130 CAATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACG
* ** * * * * * *
877460 AGTAGTGTATATGTGTTGTTCTTGATTATTTGAAACAAATAGTTTACAGAAGAGGCCTTTGTAGT
1 AATAGTGTATACCTTTTGTTCTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGT
* * * * * * * * * *
877525 CCAATGGTTTGGATAATTGCCATCCATGCAAT-GAACCGGGGTTTGAC-TCTCGGTAAATGTAGT
66 CCAACGGTTAGGATAATTGCCTTCCAAGCAATAG-ACC-TGGTTCGACTTC-CTGCAAATGCAAT
** * **
877588 TATGATA-TTAAAAATTAAGAAG-AAATTTTGAAAAGTAAAACG
128 TACAATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACG
* * *
877630 AATAGTGTATACCTTTCATG-T-TTGATTATGTGTAACGAA-ATGTGTAAAGAAGAGGAGTTAGT
1 AATAGTGTATACCTTT--TGTTCTTGATTATGTGAAACGAATA-GTGTAAAGAAGAGGCGTTTGT
* * * * * * * * *
877692 AGTCTAACAGTTAGGATAATTACCTTTCAAGCAATAGTATCAGGTTCAAC-TCAC-GACAAACGT
63 AGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAG-ACCTGGTTCGACTTC-CTG-CAAATGC
* *
877755 AATTACTATAGTAAAAAATTAAGGAGAAAATTTTGAAAAGTAAAACG
125 AATTACAATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACG
** * ** *
877802 AGA-AGTGTATAGGTGTTGTTCTTGATTATGTGAAAATAATAGTGTAAAAAAGAGGCGTTTGTAG
1 A-ATAGTGTATACCTTTTGTTCTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAG
* ** * * * * * * *
877866 TCAAACAATTAGGATAATTGCCTGCTAAGCAGTAGACCCGGGTTCGAC-TCGCGGAAAATGAAAT
65 TCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGA-CCTGGTTCGACTTC-CTGCAAATGCAAT
*** * *
877930 TTTGATAGTAAAAAATTAAGTGGAAAATTTTGAAAAGTAAAACT
128 TACAATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACG
* * * * * * * * * *
877974 AATAATTTTTACCTTTTGTGCTTCATTATGTGAAACTAAAACAT-TAAAGAGGAGGCATTTGTAG
1 AATAGTGTATACCTTTTGTTCTTGATTATGTGAAACGAATA-GTGTAAAGAAGAGGCGTTTGTAG
* *** * * * ** * * *
878038 TCCTATTTTTAGAATAATTGCCTTCCTAGCAATAGACCCAT-GTT-TAAGT-CTCGAAAAACGAA
65 TCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGA-CC-TGGTTCGACTTCCT-G-CAAATGCA
* * ** * * *
878100 ATTAAAATTGTAAAAAATTAACTGAAAAATTTTGAAAAAATTAAAGGAAATG
126 ATTACAATAGTAAAAAATTAAGGGGAAAATTTTG--AAAAGT--A--AAACG
* * * * * *
878152 ATATATATATATATATACCTTTTGTCCTTGATTATATGAAACAAATAGTGTAAAGAAGAGGTGTT
1 ----A-ATA-GTGTATACCTTTTGTTCTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTT
* * * * * *
878217 TGTAGTCCAACGGTTAGGATGATTACGTTCCAAGCAATAGACTTGGGTTCGACTTGCTGCAAATA
60 TGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCT-GGTTCGACTTCCTGCAAATG
* *
878282 CAATTACAATAGTAAAAAATTAA--GGAAAATTTGGTAAAGTAAAACG
124 CAATTACAATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACG
* * * * *
878328 ATTAACGT-TATACCTTTTGTGCTTAATTATGTTAAACGAATATTGTAAAGAAGAGGC-TCTTGT
1 AAT-A-GTGTATACCTTTTGTTCTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGT-TTGT
* ** * * * * * * *
878391 AGTGCAACTATTATGATAATTGCCTTGCAAGCAATAGGCTCGGGTTGGACTT-ATGGAAAATGCA
63 AGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGAC-CTGGTTCGACTTCCT-GCAAATGCA
** * * * *
878455 ATTAGGATTGTAAAAAA-TAATGGAGAAATTTTTGAAAAGTAGAACG
126 ATTACAATAGTAAAAAATTAA-GGGGAAAATTTTGAAAAGTAAAACG
* * * * *
878501 AATAGTATATAACTTTTGTGCTTGATTATGTGAAACAAATAGTGTAAAAAAAGAGGCGTTTGTAG
1 AATAGTGTATACCTTTTGTTCTTGATTATGTGAAACGAATAGTGT-AAAGAAGAGGCGTTTGTAG
* * * * * * *
878566 TTCAACGGTTAGGATGATTGCCTTTCAAGCAATAGACCTGGGTTCGACTGCCAGTAAATG-AAGT
65 TCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCT-GGTTCGACTTCCTGCAAATGCAATT
* *
878630 ACGATAGTAAAAAATTAA-GGGAAAATTTTGATAAGTAAAACG
129 ACAATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACG
* * * * * * * * * * **
878672 AGTCGTGTATACGTCTAGTTCTAGATTATGTGAAACAAATAGAGTAAAGATGAGGTGTTTGTCTT
1 AATAGTGTATACCTTTTGTTCTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGT
* **
878737 CCCACCATTAGGATAATTGCCTTCCA
66 CCAACGGTTAGGATAATTGCCTTCCA
878763 GTTAATAAAC
Statistics
Matches: 2384, Mismatches: 630, Indels: 379
0.70 0.19 0.11
Matches are distributed among these distances:
162 2 0.00
163 22 0.01
164 39 0.02
165 117 0.05
166 6 0.00
167 5 0.00
168 12 0.01
169 11 0.00
170 190 0.08
171 654 0.27
172 640 0.27
173 380 0.16
174 31 0.01
175 22 0.01
176 11 0.00
177 7 0.00
178 8 0.00
179 13 0.01
180 11 0.00
181 1 0.00
182 18 0.01
183 7 0.00
184 101 0.04
185 4 0.00
186 6 0.00
187 5 0.00
188 2 0.00
189 5 0.00
190 3 0.00
191 4 0.00
192 7 0.00
194 5 0.00
195 5 0.00
196 8 0.00
197 4 0.00
198 4 0.00
199 10 0.00
200 4 0.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (171 bp):
AATAGTGTATACCTTTTGTTCTTGATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGT
CCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCTGGTTCGACTTCCTGCAAATGCAATTAC
AATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACG
Found at i:877446 original size:172 final size:171
Alignment explanation
Indices: 877079--878762 Score: 1207
Period size: 172 Copynumber: 9.8 Consensus size: 171
877069 AGAATTAAGG
* ** * * **
877079 GATAGTAAAAAATCAAGGGAAAA--TTGAAAAGTAAAACGAAAAGTGTATACCTTTCGTGCTCAA
1 GATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACCTTTTGTTCTTGA
** * * * *
877142 TTATGTGAAAGGAACAGTGTAAAGAAGAGGTGTTTGTATTCCAAC-AGTTAGGATAATTACCTTC
66 TTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGA-TTAGGATAATTGCCTTC
* *** * *
877206 CAAGCAATAGA-CCAGGTTCGACTCCCAATAAATACAACTAC
130 CAAGCAATAGACCCGGGTTCGACTCCCGGCAAACACAATTAC
* * * *
877247 GATAGTAAAAAAGTTAAGGGGAAATTTTAAAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTT
1 GATAGTAAAAAA-TTAAGGGAAAATTTT-GAAAAGTAAAACGAGTAGTGTATACCTTTTGTTCTT
** * * * *
877312 GATTATGTGAAATGAATAGTGTAAATAAGAGGCATTTGTAGTCCAACGATTATGATAATTTCCTT
64 GATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCCTT
877377 CCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACACAATTAC
129 CCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACACAATTAC
* * * ** *
877420 GATTGTTAAAAATCAAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCTTGA
1 GATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACCTTTTGTTCTTGA
* * * * * * * *
877485 TTATTTGAAACAAATAGTTTACAGAAGAGGCCTTTGTAGTCCAATGGTTTGGATAATTGCCATCC
66 TTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCCTTCC
* * * * * *** * *
877550 ATGCAAT-GAACCGGGGTTTGACTCTCGGTAAATGTAGTTAT
131 AAGCAATAG-ACCCGGGTTCGACTCCCGGCAAACACAATTAC
* * *
877591 GATA-TTAAAAATTAA-GAAGAAATTTTGAAAAGTAAAACGAATAGTGTATACCTTTCATG-T-T
1 GATAGTAAAAAATTAAGGGA-AAATTTTGAAAAGTAAAACGAGTAGTGTATACCTTT--TGTTCT
* * * * *
877652 TGATTATGTGTAACGAAAT-GTGTAAAGAAGAGGAGTTAGTAGTCTAAC-AGTTAGGATAATTAC
63 TGATTATGTGAAAC-AAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGA-TTAGGATAATTGC
* * * * * * **
877715 CTTTCAAGCAATAGTA-TCAGGTTCAACTCACGACAAACGTAATTAC
126 CTTCCAAGCAATAG-ACCCGGGTTCGACTCCCGGCAAACACAATTAC
* * ** *
877761 TATAGTAAAAAATTAAGGAGAAAATTTTGAAAAGTAAAACGAGAAGTGTATAGGTGTTGTTCTTG
1 GATAGTAAAAAATTAAGG-GAAAATTTTGAAAAGTAAAACGAGTAGTGTATACCTTTTGTTCTTG
* * * *
877826 ATTATGTGAAA-ATAATAGTGTAAAAAAGAGGCGTTTGTAGTCAAACAATTAGGATAATTGCCTG
65 ATTATGTGAAACA-AATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCCTT
* * * * * **
877890 CTAAGCAGTAGACCCGGGTTCGACTCGCGGAAAATGA-AATTTT
129 CCAAGCAATAGACCCGGGTTCGACTCCCGGCAAA-CACAATTAC
* * * * * * *
877933 GATAGTAAAAAATTAAGTGGAAAATTTTGAAAAGTAAAACTAATAATTTTTACCTTTTGTGCTTC
1 GATAGTAAAAAATTAAG-GGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACCTTTTGTTCTTG
* * * * *** *
877998 ATTATGTGAAACTAAA-ACAT-TAAAGAGGAGGCATTTGTAGTCCTATTTTTAGAATAATTGCCT
65 ATTATGTGAAAC-AAATA-GTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCCT
* ** ** * * ** *
878061 TCCTAGCAATAGACCCATGTTTAAGTCTCGAAAAACGA-AATTAA
128 TCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAAC-ACAATTAC
* * * * * * * * *
878105 AATTGTAAAAAATTAACTGAAAAATTTTGAAAAAATTAAAGGAAATGATATATATATATATATAC
1 GATAGTAAAAAATTAA-GGGAAAATTTTG--AAAAGT--A--AAACG----A-GTA-GTGTATAC
* * * *
878170 CTTTTGTCCTTGATTATATGAAACAAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAACGGTTAGG
53 CTTTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGG
* * * ** ** * *
878235 ATGATTACGTTCCAAGCAATAGACTTGGGTTCGACTTGCTGCAAATACAATTAC
118 ATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACACAATTAC
* * * * *
878289 AATAGTAAAAAATTAA-GGAAAATTTGGTAAAGTAAAACGATTAACGT-TATACCTTTTGTGCTT
1 GATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACGAGT-A-GTGTATACCTTTTGTTCTT
* * * * * * *
878352 AATTATGTTAAACGAATATTGTAAAGAAGAGGC-TCTTGTAGTGCAACTATTATGATAATTGCCT
64 GATTATGTGAAACAAATAGTGTAAAGAAGAGGCGT-TTGTAGTCCAACGATTAGGATAATTGCCT
* * * * *** * ** *
878416 TGCAAGCAATAGGCTCGGGTTGGACTTATGGAAAATGCAATTAG
128 TCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACACAATTAC
* * * * * * *
878460 GATTGTAAAAAA-TAATGGAGAAATTTTTGAAAAGTAGAACGAATAGTATATAACTTTTGTGCTT
1 GATAGTAAAAAATTAA-GG-GAAAATTTTGAAAAGTAAAACGAGTAGTGTATACCTTTTGTTCTT
* * * *
878524 GATTATGTGAAACAAATAGTGTAAAAAAAGAGGCGTTTGTAGTTCAACGGTTAGGATGATTGCCT
64 GATTATGTGAAACAAATAGTGT-AAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCCT
* * * * * ** *
878589 TTCAAGCAATAGACCTGGGTTCGACTGCCAGTAAA-TGAAGTAC
128 TCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACACAATTAC
* * * * * *
878632 GATAGTAAAAAATTAAGGGAAAATTTTGATAAGTAAAACGAGTCGTGTATACGTCTAGTTCTAGA
1 GATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACCTTTTGTTCTTGA
* * * ** * *
878697 TTATGTGAAACAAATAGAGTAAAGATGAGGTGTTTGTCTTCCCACCATTAGGATAATTGCCTTCC
66 TTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCCTTCC
878762 A
131 A
878763 GTTAATAAAC
Statistics
Matches: 1181, Mismatches: 282, Indels: 104
0.75 0.18 0.07
Matches are distributed among these distances:
168 12 0.01
169 11 0.01
170 162 0.14
171 308 0.26
172 425 0.36
173 123 0.10
174 7 0.01
176 5 0.00
178 4 0.00
180 4 0.00
182 10 0.01
183 8 0.01
184 102 0.09
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (171 bp):
GATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACCTTTTGTTCTTGA
TTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCCTTCC
AAGCAATAGACCCGGGTTCGACTCCCGGCAAACACAATTAC
Found at i:878149 original size:23 final size:22
Alignment explanation
Indices: 878103--878149 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 22
878093 AAACGAAATT
**
878103 AAAATTGTAAAAAATTAACTGA
1 AAAATTGTAAAAAATTAAAGGA
*
878125 AAAATTTTGAAAAAATTAAAGGA
1 AAAATTGT-AAAAAATTAAAGGA
878148 AA
1 AA
878150 TGATATATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 7 0.33
23 14 0.67
ACGTcount: A:0.62, C:0.02, G:0.11, T:0.26
Consensus pattern (22 bp):
AAAATTGTAAAAAATTAAAGGA
Found at i:879137 original size:171 final size:166
Alignment explanation
Indices: 878955--879608 Score: 544
Period size: 171 Copynumber: 3.8 Consensus size: 166
878945 TTAATTATTG
* * * *
878955 TAGTGAAAAATTAAGGGGAAATTTTTGAAAAGTAAAACGAGTAATGTATACATTTCATTCTTCAT
1 TAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATAC-TTT-ATTCTTAAT
* * *
879020 TATGTGGAACATATAGTGTAAATAAGAGGCGTTTGTAGTGCAACAATTAGGATAATTTCCTTCCA
64 TATGTGGAACAAATAGTGTAAACAAGAGGCGTTTGTAGT-CAACAATTAGGATAATTGCCTTCCA
*
879085 AGAAATAGACCAGGGTTGACTCTCGACGAACACAATCACGA
128 AGAAATAGACCAGGGTTGACTCTCGA--AACACAATTACGA
* *
879126 TAGTAAAAAATTAAGGGGGAAATATTGAAAAGTAAAACGAGTAGTGTATACTTGTTATTCTTAAT
1 TAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATAC-T-TTATTCTTAAT
* * * * ** *
879191 TATGT-GAAAAAAGTAGTTTAAACAAAAGGCATTTGTAGTCTAACGGTTAGCATAATTGCCTTCC
64 TATGTGGAACAAA-TAGTGTAAACAAGAGGCGTTTGTAGTC-AACAATTAGGATAATTGCCTTCC
* * ** * *
879255 AA-ATAATATACCTGACTTCGACTCCTGGTAAACACATTTACGA
127 AAGA-AATAGACCAGGGTT-GACT-CTCG-AAACACAATTACGA
* * *
879298 TAGTAAAAAATTAAGGGGAAAATTTTGAAAAGT-AAA-GAAGTAGTGTATAGGTATTGTTCTTGA
1 TAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACG-AGTAGTGTATA-CT-TTATTCTTAA
* * * * * *
879361 TTATGTGAAACAAATAGTGTAAAGAAGAGTCGTTTGTAGTCCAACCATTAGGATAATTGCATTCA
63 TTATGTGGAACAAATAGTGTAAACAAGAGGCGTTTGTAGT-CAACAATTAGGATAATTGCCTTCC
* * * * * * *
879426 AAGTATTAGACCCGGGTTTGACTCACGAAAAATGCAATTTCAA
127 AAGAAATAGACCAGGG-TTGACTCTCGAAACA--CAATTACGA
* * * * * *
879469 CAGTAAAAAATTAAGTGGAAAATTTTGAAAAGTAAAACGAATAGTTTTTACCTTT-TGTGCTTGA
1 TAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATA-CTTTAT-T-CTTAA
* * * * * * *** * *
879533 TTATGTGAAACTAATACTATAAAGAAGAGGCGTTTGAAGTCATATTGTTAGGATAATTTCTTTCC
63 TTATGTGGAACAAATAGTGTAAACAAGAGGCGTTTGTAGTCA-ACAATTAGGATAATTGCCTTCC
*
879598 AAGCAATAGAC
127 AAGAAATAGAC
879609 TCGGGTTCAA
Statistics
Matches: 389, Mismatches: 74, Indels: 39
0.77 0.15 0.08
Matches are distributed among these distances:
169 4 0.01
170 11 0.03
171 236 0.61
172 133 0.34
173 4 0.01
174 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.31
Consensus pattern (166 bp):
TAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACTTTATTCTTAATTA
TGTGGAACAAATAGTGTAAACAAGAGGCGTTTGTAGTCAACAATTAGGATAATTGCCTTCCAAGA
AATAGACCAGGGTTGACTCTCGAAACACAATTACGA
Found at i:879457 original size:664 final size:664
Alignment explanation
Indices: 878167--879426 Score: 1436
Period size: 665 Copynumber: 1.9 Consensus size: 664
878157 TATATATATA
* *
878167 TACCTTTTGTCCTTGATTATATGAAACAAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAACGGTT
1 TACCATTTGTCCTTGATTATATGAAACAAATACTGTAAAGAAGAGGTGTTTGTAGTCCAACGGTT
* * ** * * **
878232 AGGATGATTACGTTCCAAGCAATAGACTTGGGTTCGACTTGCTGCAAATACAATTACAATAGTAA
66 AGGATAATTACCTTCCAAGCAATAGACCCGAGTTCGACTTCCAACAAATACAATTACAATAGTAA
* * * ** *
878297 AAAATTAAGGAAAATTTGGTAAAGTAAAACGATTAACGTTATACCTTTTGTGCTTAATTATGTTA
131 AAAATTAAGGAAAATTTGGAAAAGTAAAACGAGTAACGTTATACATTTCATGCTTAATTATGTGA
* * * * *
878362 AACGAATATTGTAAAGAAGAGGCTCTTGTAGTGCAACTATTATGATAATTGCCTTGCAAGCAATA
196 AACGAATAGTGTAAAGAAGAGGCTCTTGTAGTGCAACAATTAGGATAATTGCCTTCCAAGAAATA
* * ** * * * * *
878427 GGCTCGGGTTGGACTTATGGAAAATGCAATTAGGATTGTAAAAAATAATGGAGAAATTTTTGAAA
261 GACTCGGGTTGGACTTATCGAAAACACAATCACGATAGTAAAAAATAAGGGAGAAATTATTGAAA
* * *
878492 AGTAGAACGAATAGTATATAACTTTTGTGCTTGATTATGTGAAACAAATAGTGTAAAAAAAGAGG
326 AGTAAAACGAATAGTATATAACTTTTATGCTTAATTATGTGAAACAAATAGTGTAAAAAAAGAGG
* * * * * **
878557 CGTTTGTAGTTCAACGGTTAGGATGATTGCCTTTCAAGCAATAGACCTGGGTTCGACTGCCAGTA
391 CATTTGTAGTTCAACGGTTAGCATAATTGCCTTCCAAACAATAGACCTGACTTCGACTGCCAGTA
* * * *
878622 AATGAAGTACGATAGTAAAAAATTAAGGGAAAATTTTGATAAGTAAAACGAGTCGTGTATACGTC
456 AATCAAGTACGATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAAC-AGTAGTGTATACGTA
* ** *
878687 TAGTTCTAGATTATGTGAAACAAATAGAGTAAAGATGAGGTGTTTGTCTTCCCACCATTAGGATA
520 TAGTTCTAGATTATGTGAAACAAATAGAGTAAAGAAGAGGTGTTTGTAGTCCAACCATTAGGATA
* * *
878752 ATTGCCTTCCAGTTAATAAACTCGGTTTCAACAAGCGAAAAAGGTAATTCTAAAAGTAAAAAAGT
585 ATTGCATTCAAGTTAATAAACCCGGTTTCAACAAGCGAAAAAGGTAATTCTAAAAGTAAAAAAGT
878817 AAAACAAATAGTGTT
650 AAAACAAATAGTGTT
* * * * * **
878832 TACCATTTGTGCTTGATTATGTTAAACGAATACTGTAAAGAAGAGGTGTTTGTAGTCTAATTGTT
1 TACCATTTGTCCTTGATTATATGAAACAAATACTGTAAAGAAGAGGTGTTTGTAGTCCAACGGTT
* ** * * *** *
878897 AGGATAATTTCCTTCCAAGCAATAGACCCGAGTTTTAGTTCCAACAAAT-TAATTATTGTAGTGA
66 AGGATAATTACCTTCCAAGCAATAGACCCGAGTTCGACTTCCAACAAATACAATTACAATAGTAA
* * * * *
878961 AAAATTAAGGGGAAATTTTTGAAAAGTAAAACGAGTAATG-TATACATTTCATTCTTCATTATGT
131 AAAATTAA--GGAAAATTTGGAAAAGTAAAACGAGTAACGTTATACATTTCATGCTTAATTATGT
* * *
879025 GGAAC-ATATAGTGTAAATAAGAGGCGT-TTGTAGTGCAACAATTAGGATAATTTCCTTCCAAGA
194 GAAACGA-ATAGTGTAAAGAAGAGGC-TCTTGTAGTGCAACAATTAGGATAATTGCCTTCCAAGA
* * *
879088 AATAGAC-CAGGGTT-GAC-TCTCGACGAACACAATCACGATAGTAAAAAATTAAGGGGGAAA-T
257 AATAGACTC-GGGTTGGACTTATCGA-AAACACAATCACGATAGTAAAAAA-TAAGGGAGAAATT
* * * *
879149 ATTGAAAAGTAAAACGAGTAGTGTAT-ACTTGTTATTCTTAATTATGTGAAA-AAAGTAGTTTAA
319 ATTGAAAAGTAAAACGAATAGTATATAACTT-TTATGCTTAATTATGTGAAACAAA-TAGTGTAA
* * *
879212 ACAAA-AGGCATTTGTAG-TCTAACGGTTAGCATAATTGCCTTCCAAATAATATACCTGACTTCG
382 AAAAAGAGGCATTTGTAGTTC-AACGGTTAGCATAATTGCCTTCCAAACAATAGACCTGACTTCG
* *
879275 ACT-CCTGGTAAA-CACATTTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAGA-A
446 ACTGCC-AGTAAATCA-A-GTACGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAA-ACA
* * * *
879337 GTAGTGTATAGGTATTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGA-GTCGTTTGTAGT
506 GTAGTGTATACGTATAGTTCTAGATTATGTGAAACAAATAGAGTAAAGAAGAGGT-GTTTGTAGT
879401 CCAACCATTAGGATAATTGCATTCAA
570 CCAACCATTAGGATAATTGCATTCAA
879427 AGTATTAGAC
Statistics
Matches: 489, Mismatches: 90, Indels: 33
0.80 0.15 0.05
Matches are distributed among these distances:
662 5 0.01
663 68 0.14
664 187 0.38
665 202 0.41
666 27 0.06
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (664 bp):
TACCATTTGTCCTTGATTATATGAAACAAATACTGTAAAGAAGAGGTGTTTGTAGTCCAACGGTT
AGGATAATTACCTTCCAAGCAATAGACCCGAGTTCGACTTCCAACAAATACAATTACAATAGTAA
AAAATTAAGGAAAATTTGGAAAAGTAAAACGAGTAACGTTATACATTTCATGCTTAATTATGTGA
AACGAATAGTGTAAAGAAGAGGCTCTTGTAGTGCAACAATTAGGATAATTGCCTTCCAAGAAATA
GACTCGGGTTGGACTTATCGAAAACACAATCACGATAGTAAAAAATAAGGGAGAAATTATTGAAA
AGTAAAACGAATAGTATATAACTTTTATGCTTAATTATGTGAAACAAATAGTGTAAAAAAAGAGG
CATTTGTAGTTCAACGGTTAGCATAATTGCCTTCCAAACAATAGACCTGACTTCGACTGCCAGTA
AATCAAGTACGATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACAGTAGTGTATACGTAT
AGTTCTAGATTATGTGAAACAAATAGAGTAAAGAAGAGGTGTTTGTAGTCCAACCATTAGGATAA
TTGCATTCAAGTTAATAAACCCGGTTTCAACAAGCGAAAAAGGTAATTCTAAAAGTAAAAAAGTA
AAACAAATAGTGTT
Found at i:880210 original size:171 final size:171
Alignment explanation
Indices: 879982--880340 Score: 465
Period size: 171 Copynumber: 2.1 Consensus size: 171
879972 AAAAAGTTTT
*
879982 GGGGAAATTTTTGAAAAGTAAAAGAAATAGTATATACTTTTTGTGCTTGATTATGTGAAACAAAT
1 GGGGAAATTTTTGAAAAGTAAAAGAAATAGTATATACCTTTTGTGCTTGATTATGTGAAACAAAT
* ** * * * *
880047 AGTGTAAAGAAGAGTTGTTTTTCGTTCAATGGTTAGGATGATTTTCTTTC-AAGAAATATACTTG
66 ACTGTAAAGAAGAGGCGTTTTT-GTCCAATGGTTAGGAT-AATTTCCTTCAAAGAAATAGACTTG
* * *
880111 GGTTCGACTTCCGGT-AAA-TAAATTACGATAGCAAAAAATTAA
129 GGTTCAAC-TCCCGTCAAACGAAATTACGATAGCAAAAAATTAA
* * * *
880153 GGGGAAAATTTTGAAAAGTAAAACG-AATAGTTTTTACCTTTTGTGCTTGATTATGTGAAACTAA
1 GGGGAAATTTTTGAAAAGTAAAA-GAAATAGTATATACCTTTTGTGCTTGATTATGTGAAACAAA
* * *
880217 TACTGTAAAGAAGAGGCGTTTTTGTCCTATTGTTAGGATAATTTCCTTCAAAGCAATAGACTTGG
65 TACTGTAAAGAAGAGGCGTTTTTGTCCAATGGTTAGGATAATTTCCTTCAAAGAAATAGACTTGG
* * *
880282 GTTCAACTCCCTTCAAACGAAATTACGATTGTAAAAAATTAA
130 GTTCAACTCCCGTCAAACGAAATTACGATAGCAAAAAATTAA
880324 GGGGAAATTTTTGAAAA
1 GGGGAAATTTTTGAAAA
880341 AATTAAAGAA
Statistics
Matches: 162, Mismatches: 22, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
169 12 0.07
170 35 0.22
171 114 0.70
172 1 0.01
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.34
Consensus pattern (171 bp):
GGGGAAATTTTTGAAAAGTAAAAGAAATAGTATATACCTTTTGTGCTTGATTATGTGAAACAAAT
ACTGTAAAGAAGAGGCGTTTTTGTCCAATGGTTAGGATAATTTCCTTCAAAGAAATAGACTTGGG
TTCAACTCCCGTCAAACGAAATTACGATAGCAAAAAATTAA
Found at i:880360 original size:2 final size:2
Alignment explanation
Indices: 880355--880396 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
880345 AAAGAAAATA
880355 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
880397 CTTTTTCTCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:880976 original size:173 final size:172
Alignment explanation
Indices: 880404--881187 Score: 711
Period size: 173 Copynumber: 4.6 Consensus size: 172
880394 TATCTTTTTC
* * * * *
880404 TCTTGATTATATGAAACAAATAGTGTAAATAAGAGGCAATTT-TAGTCCAACGGTTAGGATGATT
1 TCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGC-GTTTGTAGTCTAACGGTTAGGATAATT
* * ** * * *
880468 GCCTTCCAAGCATTAGA-CTCGGGTTCGACTTGCTGCAAATACAATTAC-ATTAATAAAAAAATT
65 GCCTTCCAAGCAATAGACCT-GAGTTCGACTCACGGCAAACACAATTACGA-TAGT-AAAAAATT
* * * *** *
880531 AACGGGAAAATTTGGAAAAGTAAAATGATTAGCGTATACCTTTTGT
127 AAGGGGAAAATTTTGAAAAGTAAAATGAATATTATATACGTTTTGT
* ** * * * * * *
880577 GCTTGATTATGTGAAATGAATACTATAAAAAAGAGGCGCTTGTAGTCCAACTGTTAGGATAATTG
1 TCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCTAACGGTTAGGATAATTG
* * * * * * * * * * * *
880642 CCATCCAAGCAACAGGCCTGGGTTAGACTTATGGCAAACGCTATTACGATTGTAAAAAGTTATGG
66 CCTTCCAAGCAATAGACCTGAGTTCGACTCACGGCAAACACAATTACGATAGTAAAAAATTAAGG
* ** *
880707 GGAAATTTTTGAAAAGTAAAACAAATATTATATACTTTTTGT
131 GGAAAATTTTGAAAAGTAAAATGAATATTATATACGTTTTGT
* * *
880749 GCTTGATTATGTGAAACAAATTGTGTAAAGAAGAGGCGTTTGTTGT-TCAACGGTTAGGATAATT
1 TCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCT-AACGGTTAGGATAATT
* ** *
880813 GCCTTCCAAGCAATAGACTTGAGTTCGACTCACAACAAACATAATTACGATAGTAAAAAACTTAA
65 GCCTTCCAAGCAATAGACCTGAGTTCGACTCACGGCAAACACAATTACGATAGTAAAAAA-TTAA
** * * * *
880878 GGGGAATTTTTTTAAAAGTAAAATGAGTATTGTATACGTCTTGT
129 GGGGAAAATTTTGAAAAGTAAAATGAATATTATATACGTTTTGT
* *
880922 TCTTGATTATGTGAAACAAATAGTGTAAAGATGAGGTGTTTGTAGTCTAACGGTTAGGATAATTG
1 TCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCTAACGGTTAGGATAATTG
* * * * * * * *
880987 GCTTCCAAGCAATAGACC-CAGATTCAACTCCCGTCAAACGCAATTACGAAATTAAAAAATTAAG
66 CCTTCCAAGCAATAGACCTGAG-TTCGACTCACGGCAAACACAATTACGATAGTAAAAAATTAAG
* * * *
881051 GGG-AAATTTTGAAAAGTAAAGA-GACTAATATATATGTGTTGT
130 GGGAAAATTTTGAAAAGTAAA-ATGAATATTATATACGTTTTGT
* * * * * ** *
881093 TATTGATTATGTGAAATAAGTAGTGTAAATAAGAGGCGTTTGCAGTCTAA-TATGTAGGATAATG
1 TCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCTAACGGT-TAGGATAATT
*
881157 GCCTTCCAAGCAATAGACCTGAGTTTGACTC
65 GCCTTCCAAGCAATAGACCTGAGTTCGACTC
881188 TCGACAAAAG
Statistics
Matches: 493, Mismatches: 108, Indels: 22
0.79 0.17 0.04
Matches are distributed among these distances:
170 1 0.00
171 105 0.21
172 155 0.31
173 228 0.46
174 4 0.01
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (172 bp):
TCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCTAACGGTTAGGATAATTG
CCTTCCAAGCAATAGACCTGAGTTCGACTCACGGCAAACACAATTACGATAGTAAAAAATTAAGG
GGAAAATTTTGAAAAGTAAAATGAATATTATATACGTTTTGT
Found at i:881056 original size:345 final size:343
Alignment explanation
Indices: 880385--881187 Score: 821
Period size: 345 Copynumber: 2.3 Consensus size: 343
880375 ATATATATAT
* * *
880385 ATATATATATATCTTTTTCTCTTGATTATATGAAACAAATAGTGTAAATAAGAGGCAATTT-TAG
1 ATAT-TATATA-CTTTTTGTCTTGATTATGTGAAACAAATAGTGTAAATAAGAGGC-GTTTGTAG
* * * * * ** ** *
880449 TCCAACGGTTAGGATGATTGCCTTCCAAGCATTAGACTCGGGTTCGACTTGCTGCAAATACAATT
63 TTCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTTGAGTTCGACTCACAACAAACACAATT
* *
880514 ACATTAATAAAAAAATTAACGGGAAAATTTGGAAAAGTAAAATGATTAGCGTATACCTTTTGTGC
128 ACATTAATAAAAAAATTAACGGGAAAATTTGGAAAAGTAAAATGAGTAGCGTATACCTCTTGTGC
** *
880579 TTGATTATGTGAAATGAATACTATAAAAAAGAGGCGCTTGTAGTCCAACTGTTAGGATAATTGCC
193 TTGATTATGTGAAACAAATACTATAAAAAAGAGGCGCTTGTAGTCCAACGGTTAGGATAATTGCC
* ** * * * * * * *
880644 ATCCAAGCAACAGGCCTGGGTTAGACTTATGGCAAACGCTATTACGATTGTAAAAAGTTATGGGG
258 ATCCAAGCAACAGACCCAGATTAGACTCACGGCAAACGCAATTACGAATGTAAAAAATTAAGGGG
880709 AAATTTTTGAAAAGTAAA-ACAA
323 AAA-TTTTGAAAAGTAAAGA-AA
* * *
880731 ATATTATATACTTTTTGTGCTTGATTATGTGAAACAAATTGTGTAAAGAAGAGGCGTTTGTTGTT
1 ATATTATATACTTTTTGT-CTTGATTATGTGAAACAAATAGTGTAAATAAGAGGCGTTTGTAGTT
*
880796 CAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTTGAGTTCGACTCACAACAAACATAATTAC
65 CAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTTGAGTTCGACTCACAACAAACACAATTAC
* * * ** ** ** * *
880861 GA-TAGTAAAAAACTTAAGGGGAATTTTTTTAAAAGTAAAATGAGTATTGTATACGTCTTGTTCT
130 -ATTAATAAAAAAATTAACGGGAAAATTTGGAAAAGTAAAATGAGTAGCGTATACCTCTTGTGCT
* * * * * * * * *
880925 TGATTATGTGAAACAAATAGTGTAAAGATGAGGTGTTTGTAGTCTAACGGTTAGGATAATTGGCT
194 TGATTATGTGAAACAAATACTATAAAAAAGAGGCGCTTGTAGTCCAACGGTTAGGATAATTGCCA
* * *
880990 TCCAAGCAATAGACCCAGATTCA-ACTCCCGTCAAACGCAATTACGAAAT-TAAAAAATTAAGGG
259 TCCAAGCAACAGACCCAGATT-AGACTCACGGCAAACGCAATTACG-AATGTAAAAAATTAAGGG
*
881053 GAAATTTTGAAAAGTAAAGAGA
322 GAAATTTTGAAAAGTAAAGAAA
* * * * * * *
881075 CTAATATATA-TGTGTTGTTATTGATTATGTGAAATAAGTAGTGTAAATAAGAGGCGTTTGCAG-
1 ATATTATATACT-TTTTG-TCTTGATTATGTGAAACAAATAGTGTAAATAAGAGGCGTTTGTAGT
** * * *
881138 TCTAA-TATGTAGGATAATGGCCTTCCAAGCAATAGACCTGAGTTTGACTC
64 TC-AACGGT-TAGGATAATTGCCTTCCAAGCAATAGACTTGAGTTCGACTC
881188 TCGACAAAAG
Statistics
Matches: 376, Mismatches: 71, Indels: 22
0.80 0.15 0.05
Matches are distributed among these distances:
343 4 0.01
344 114 0.30
345 250 0.66
346 8 0.02
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (343 bp):
ATATTATATACTTTTTGTCTTGATTATGTGAAACAAATAGTGTAAATAAGAGGCGTTTGTAGTTC
AACGGTTAGGATAATTGCCTTCCAAGCAATAGACTTGAGTTCGACTCACAACAAACACAATTACA
TTAATAAAAAAATTAACGGGAAAATTTGGAAAAGTAAAATGAGTAGCGTATACCTCTTGTGCTTG
ATTATGTGAAACAAATACTATAAAAAAGAGGCGCTTGTAGTCCAACGGTTAGGATAATTGCCATC
CAAGCAACAGACCCAGATTAGACTCACGGCAAACGCAATTACGAATGTAAAAAATTAAGGGGAAA
TTTTGAAAAGTAAAGAAA
Found at i:881785 original size:170 final size:169
Alignment explanation
Indices: 881252--881961 Score: 629
Period size: 170 Copynumber: 4.1 Consensus size: 169
881242 AGTTGTGTAT
* * * * * * * ** *
881252 AAGAGACGTTTGTTGTCTAACAGTTACGATAATTGCCTTTCAAGCAATAGACCTAGGTTTGACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTAGACTC
** * * *
881317 AATGG-AAAAGCAATTACAATAGTAAAATAATTAAGGGGAAAATTTTAAAAAGTAAAATGAATAG
66 -CCGGCAAATG-AATTACGATAGT-AAA-AATTAAGGGGAAAATTTTAAAAAGTAAAACGAATAG
* *
881381 TATAAACCTTTTGTTCTTGATTATGTGAAATGAATAGTGTAAAG
127 TATATACC-TTTGTTCTTGATTATGTGAAACGAATAGTGTAAAG
* * * * * * *
881425 AAGAGGCGTTTATAATCCAACGGTAAGGATAATTTCCTTCCAAGCAATGGACCCGGGTTTGACTA
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTAGACTC
* ** ** *
881490 TCGGCAAACAT-AATTACGATAGTAAAAAGTTAA-GGGAATTTTTTTTACAGTAAAACGAATAGT
66 CCGGC-AA-ATGAATTACGATAGTAAAAA-TTAAGGGGAAAATTTTAAAAAGTAAAACGAATAGT
* * * *
881553 GTTTACCTTTCGTGCTTGACTATGTG-AACTGAATAGTGTAAAG
128 ATATACCTTT-GTTCTTGATTATGTGAAAC-GAATAGTGTAAAG
** * * * * * * *
881596 AAGAGGTATTTGTAGTCCAACGATTAGGATAATTACCTTCAAAACAATAGTCCCAGGTTCGACCC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTAGACTC
* * * *
881661 CCGGCAAATGAATTACGATTGTAAAAATTAAGGGGAAAATTCTAAAAAGTAAAACGAGTAGTCTA
66 CCGGCAAATGAATTACGATAGTAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATAGTATA
** * * *
881726 TAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTGAAT
131 TACCT-TTGTTCTTGATTATGTGAAACGAATAGTGTAAAG
* * *
881766 AAGAGGCGTTTGCAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTAAACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTAGACTC
* * * * * * *
881831 CCGGCAAATGCAATCATGATAATAAAATAATAAGGGAAAAATTTAAAAAAGTAAAATGAATAATG
66 CCGGCAAATG-AATTACGATAGTAAAA-ATTAAGGGGAAAATTTTAAAAAGTAAAACGAAT-A-G
* * * *
881896 T-TAAACCTCTTGTGCTTGATTATGTTAAATGAATAGTGTAAAG
127 TATATACCT-TTGTTCTTGATTATGTGAAACGAATAGTGTAAAG
*
881939 AAAGATGCGTTTGTAGTCCAACG
1 -AAGAGGCGTTTGTAGTCCAACG
881962 AAATTTTTTG
Statistics
Matches: 425, Mismatches: 97, Indels: 29
0.77 0.18 0.05
Matches are distributed among these distances:
169 6 0.01
170 136 0.32
171 127 0.30
172 36 0.08
173 95 0.22
174 24 0.06
175 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (169 bp):
AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTAGACTC
CCGGCAAATGAATTACGATAGTAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATAGTATA
TACCTTTGTTCTTGATTATGTGAAACGAATAGTGTAAAG
Found at i:882351 original size:438 final size:437
Alignment explanation
Indices: 881538--882358 Score: 962
Period size: 438 Copynumber: 1.9 Consensus size: 437
881528 TTTTTTTTAC
* * *
881538 AGTAAAACGAATAGTGTTTACCTTTCGTGCTTGACTATGTGAACTGAATAGTGTAAAGAAGAGGT
1 AGTAAAACGAATAGTGTATACATTTCGTGCTTGACTATGTGAACTGAATAGTGTAAAGAAGAGGC
**
881603 ATTTGTAGTCCAACGATTAGGATAATTACCTTCAAAACAATAGTCCCAGGTTCGACCCCCGGCAA
66 ATTTGTAGTCCAACGATTAGGATAATTACCTTCAAAACAATAGTCCCAGGTTCGACCCCCGAAAA
*
881668 ATGAATTACGATTGTAAAAATTAAGGGGAAAATTCTAAAAAGTAAAACGAGTAGTCTATAGGTGT
131 ATGAATTACGATAGTAAAAATTAAGGGGAAAATTCTAAAAAGTAAAACGAGTAGTCTATAGGTGT
* * * * *
881733 TGTTCTTGATTATGTGAAACAAATAGTGTGAATAAGAGGCGTTTGCAGTCCAACGGTTAGGATAA
196 TGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCCTTTACAGTCCAACGATTAGGATAA
* * *
881798 TTGCCTTCCAAGCAATAGACCCGGGTTAAACTCCCGGCAAATGCAATCATGATAATAAAATAATA
261 TTGCCTTCCAAGCAATAGACCCGGGTTAAACTCCCAGCAAATGCAATCACGAGAATAAAATAATA
*
881863 AGGGAAAAATTTAAAAAAGTAAAATGAATAATGTTAAACCTCTTGTGCTTGATTATGTTAAATGA
326 AGGGAAAAATTTAAAAAAGTAAAACGAATAATGTTAAACCTCTTGTGCTTGATTATGTTAAATGA
881928 ATAGTGTAAAGAAAGATGCGTTTGTAGTCCAACGAAATTTTTTGAAA
391 ATAGTGTAAAGAAAGATGCGTTTGTAGTCCAACGAAATTTTTTGAAA
* * * *
881975 AGTAAAACGAGTAGTGTATACATGTT-GTTCTTGATTATGTGTAA-TGAATAGTGTAAAGAATAG
1 AGTAAAACGAATAGTGTATACAT-TTCGTGCTTGACTATGTG-AACTGAATAGTGTAAAGAAGAG
* * * * * * * *
882038 GCGTTTTTAGTCTAACGATTAGGATAATTTA-TTTCCAAGCAATA-TACCCGGGTTTC-ACTCCC
64 GCATTTGTAGTCCAACGATTAGGATAA-TTACCTTCAAAACAATAGT-CCCAGG-TTCGACCCCC
* * * * * *
882100 GAAAAAAT-ATTTAGGATAGTAAAAAATTAA-GGGACAAATTTTGAAAAGTAAAAGGAGTAGTGT
126 G-AAAAATGAATTACGATAGT-AAAAATTAAGGGGA-AAATTCTAAAAAGTAAAACGAGTAGTCT
* * * * *
882163 ATATGTGTTGTTCTTGATTATTTGAAATAAATAGTTTAAAGAAGAGGCCTTTATAGTCCAACGAT
188 ATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCCTTTACAGTCCAACGAT
* * * * * * * ** * *
882228 TTGGATAATTTCCTTCCATGCAATGGA-CCGAGGTTCAACTCTCAGTAAATGTTATTACGAGATT
253 TAGGATAATTGCCTTCCAAGCAATAGACCCG-GGTTAAACTCCCAGCAAATGCAATCACGAGAAT
* ** * * *
882292 AAAA-AATTAAAGGG-AAATTTTTGAAAAGTAAAACGAATAGTGTTATACGT-TTCGTGCTTGAT
317 AAAATAA-T-AAGGGAAAAATTTAAAAAAGTAAAACGAATAATGTTAAACCTCTT-GTGCTTGAT
882354 TATGT
379 TATGT
882359 GAAACAAATT
Statistics
Matches: 317, Mismatches: 55, Indels: 23
0.80 0.14 0.06
Matches are distributed among these distances:
436 1 0.00
437 115 0.36
438 196 0.62
439 5 0.02
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (437 bp):
AGTAAAACGAATAGTGTATACATTTCGTGCTTGACTATGTGAACTGAATAGTGTAAAGAAGAGGC
ATTTGTAGTCCAACGATTAGGATAATTACCTTCAAAACAATAGTCCCAGGTTCGACCCCCGAAAA
ATGAATTACGATAGTAAAAATTAAGGGGAAAATTCTAAAAAGTAAAACGAGTAGTCTATAGGTGT
TGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCCTTTACAGTCCAACGATTAGGATAA
TTGCCTTCCAAGCAATAGACCCGGGTTAAACTCCCAGCAAATGCAATCACGAGAATAAAATAATA
AGGGAAAAATTTAAAAAAGTAAAACGAATAATGTTAAACCTCTTGTGCTTGATTATGTTAAATGA
ATAGTGTAAAGAAAGATGCGTTTGTAGTCCAACGAAATTTTTTGAAA
Found at i:882470 original size:173 final size:171
Alignment explanation
Indices: 881961--883059 Score: 996
Period size: 171 Copynumber: 6.4 Consensus size: 171
881951 GTAGTCCAAC
* * *
881961 GAAATTTTTTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTATGTGTAATGAATAG
1 GAAA-TTTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAATAAATAG
* * * ** * *
882026 TGTAAAGAATAGGCGTTTTTAGTCTAACGATTAGGATAATTTATTTCCAAGCAATATACCCGGGT
65 TGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTTCCTTCCAAGCAATAGACTCGGG-
* * * *
882091 TTC-ACTCCCGAAAAA-ATATTTAGGATAGTAAAAAATTAA-GG
129 TTCGACTCCC-AAAAATGTAATTACGATAATAAAAAATTAAGGG
* * * *
882132 GACAAATTTTGAAAAGTAAAAGGAGTAGTGTATATGTGTTGTTCTTGATTATTTGAAATAAATAG
1 GA-AATTTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAATAAATAG
* * * * * *
882197 TTTAAAGAAGAGGCCTTTATAGTCCAACGATTTGGATAATTTCCTTCCATGCAATGGAC-CGAGG
65 TGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTTCCTTCCAAGCAATAGACTCG-GG
* * * * * * *
882261 TTCAACTCTCAGTAAATGTTATTACGAGATTAAAAAATTAAAGG
129 TTCGACTCCCA-AAAATGTAATTACGATAATAAAAAATTAAGGG
* * * *
882305 GAAATTTTTGAAAAGTAAAACGAATAGTGTTATACGT-TTCGTGCTTGATTATGTGAAACAAATT
1 GAAATTTTTGAAAAGTAAAACGAGTAGTG-TATACGTGTT-GTTCTTGATTATGTGAAATAAATA
* * * * * *
882369 GTGTGAAA-AAGAGGTGTTAGTAGTCTAGCGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGG
64 GTGT-AAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTTCCTTCCAAGCAATAGACTCGG
* *
882433 GTTTGACTCCCGAAAAATGTAATTATGATAATAAAAAATTGAAGGG
128 GTTCGACTCCC-AAAAATGTAATTACGATAATAAAAAATT-AAGGG
* * * *
882479 GAAAATTTTGAAAAGTAAAACGAGTAGTGTATAGGTGTTGTTCTTGACTATATGAAATAAATAGT
1 GAAATTTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAATAAATAGT
* * * * ** *
882544 GTAAAGAAGAGGCATGTGTAGTCCAACGGTTTGGATAATTAACTTGCAAGCAATAGACAT-GGGT
66 GTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTTCCTTCCAAGCAATAGAC-TCGGGT
* * ** * *
882608 TTGACTCCCAACAAATGCCAATTACGATTGTCAAAAATTGAGGG
130 TCGACTCCCAA-AAATG-TAATTACGATAATAAAAAATTAAGGG
* * * * * * *
882652 GAAA-TTTTAAAAAGAAAAACAAATAATGTATACATGTTGTTCTTGATTATGTGAAATGAATAGT
1 GAAATTTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAATAAATAGT
* * * ** *
882716 GTAAAAAAGAAGCGTTTGTAGTCCAACGATTATGATAATTTCCTTATAAGCAATAGACCCGGGTT
66 GTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTTCCTTCCAAGCAATAGACTCGGGTT
* * *** *
882781 CAACTCCCATCAAACACAATTAC-AAAAGTAAAAAATTAAGGG
131 CGACTCCCA-AAAATGTAATTACGATAA-TAAAAAATTAAGGG
* * * * * * * * * *
882823 GAAATTTTT-AAAAGTATAACGTGTGGTTTATACATGTTTTTATTGATTATATGGAACAAATAGT
1 GAAATTTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAATAAATAGT
* * * * * *
882887 TTAAAGAATAGGCGTTTGTAGTCCAACGGTTTGGATAATTTCCTTCCATGCAATGGACTCGGGTT
66 GTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTTCCTTCCAAGCAATAGACTCGGGTT
* * *** * *
882952 CGAATGTCGGTAAATGTAATTATGATATTAAAAAATTAAGGG
131 CGACT-CCCAAAAATGTAATTACGATAATAAAAAATTAAGGG
* * * * * *
882994 GAAA-TTTTGAAAAGTAAAACGAATAGTGTATACCTTTTATTTTTGATTATGTGAAATGAATAGT
1 GAAATTTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAATAAATAGT
883058 GT
66 GT
883060 GTCAACACAC
Statistics
Matches: 741, Mismatches: 163, Indels: 48
0.78 0.17 0.05
Matches are distributed among these distances:
170 11 0.01
171 302 0.41
172 170 0.23
173 202 0.27
174 56 0.08
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (171 bp):
GAAATTTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAATAAATAGT
GTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTTCCTTCCAAGCAATAGACTCGGGTT
CGACTCCCAAAAATGTAATTACGATAATAAAAAATTAAGGG
Found at i:883139 original size:37 final size:36
Alignment explanation
Indices: 883083--883182 Score: 119
Period size: 36 Copynumber: 2.7 Consensus size: 36
883073 TTCGTCCTAC
* * *
883083 TAGGATTCAAACTCCAAAAAATAGGATAGAATTTTAA
1 TAGGATT-TAACTCCTAAAAATAGGATAGAATTCTAA
* *
883120 TAGGATTTAACTCCTAAAAATAGGATAGAGTTCTAC
1 TAGGATTTAACTCCTAAAAATAGGATAGAATTCTAA
* *
883156 TATGATTTAAACTCCTAAAGATAGGAT
1 TAGGATTT-AACTCCTAAAAATAGGAT
883183 CCACAAGCAC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
36 31 0.56
37 24 0.44
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.30
Consensus pattern (36 bp):
TAGGATTTAACTCCTAAAAATAGGATAGAATTCTAA
Found at i:883794 original size:24 final size:23
Alignment explanation
Indices: 883732--883794 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 23
883722 TTTTCTTTGC
*
883732 ATTTTTATTATTACTATTATATTT
1 ATTTTTATT-CTACTATTATATTT
*
883756 ATTATTATTCTTACTATTATATTT
1 ATTTTTATTC-TACTATTATATTT
883780 -TCCTTTTATTCTACT
1 AT--TTTTATTCTACT
883795 TGTTTATATT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
23 1 0.03
24 25 0.76
25 7 0.21
ACGTcount: A:0.25, C:0.11, G:0.00, T:0.63
Consensus pattern (23 bp):
ATTTTTATTCTACTATTATATTT
Found at i:883841 original size:16 final size:15
Alignment explanation
Indices: 883733--883849 Score: 55
Period size: 15 Copynumber: 7.5 Consensus size: 15
883723 TTTCTTTGCA
883733 TTTTTATTATTACTAT
1 TTTTTATTATTA-TAT
883749 TATATTTATTA-T-TA-
1 T-T-TTTATTATTATAT
* *
883763 TTCTTACTATTATAT
1 TTTTTATTATTATAT
*
883778 TTTCCTT-TTATTCTACT
1 TTT--TTATTATTATA-T
*
883795 TGTTTA-TATTATAT
1 TTTTTATTATTATAT
* * *
883809 ATGTATATTTTTTATAT
1 -TTTTTA-TTATTATAT
883826 TTTATTATTATTATAT
1 TTT-TTATTATTATAT
883842 TTTTTATT
1 TTTTTATT
883850 TTCTCTTTCT
Statistics
Matches: 76, Mismatches: 12, Indels: 27
0.66 0.10 0.23
Matches are distributed among these distances:
12 5 0.07
13 2 0.03
14 4 0.05
15 22 0.29
16 20 0.26
17 16 0.21
18 7 0.09
ACGTcount: A:0.26, C:0.06, G:0.02, T:0.67
Consensus pattern (15 bp):
TTTTTATTATTATAT
Found at i:883892 original size:11 final size:10
Alignment explanation
Indices: 883814--883892 Score: 54
Period size: 11 Copynumber: 7.5 Consensus size: 10
883804 TATATATGTA
883814 TATTTTTTA-
1 TATTTTTTAT
883823 TATTTTATTAT
1 TATTTT-TTAT
*
883834 TATTATATTTTT
1 TATT-T-TTTAT
* *
883846 TATTTTCTCT
1 TATTTTTTAT
883856 T-TCTTTTTAT
1 TAT-TTTTTAT
*
883866 TATTCTTGTAT
1 TATT-TTTTAT
883877 TATTTTTATAT
1 TATTTTT-TAT
883888 TATTT
1 TATTT
883893 ATTTTGTTAT
Statistics
Matches: 55, Mismatches: 7, Indels: 14
0.72 0.09 0.18
Matches are distributed among these distances:
9 7 0.13
10 16 0.29
11 23 0.42
12 8 0.15
13 1 0.02
ACGTcount: A:0.20, C:0.05, G:0.01, T:0.73
Consensus pattern (10 bp):
TATTTTTTAT
Found at i:884029 original size:21 final size:21
Alignment explanation
Indices: 884005--884059 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 21
883995 AATATTATAC
*
884005 ATATATTTTTCTATTA-ATTTT
1 ATATATTTTT-TATTACATTAT
884026 ATATATTTTTTATTATCATTAT
1 ATATATTTTTTATTA-CATTAT
884048 ATTATATTTTTT
1 A-TATATTTTTT
884060 TTATTTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 5 0.17
21 10 0.33
22 5 0.17
23 10 0.33
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (21 bp):
ATATATTTTTTATTACATTAT
Found at i:884053 original size:23 final size:21
Alignment explanation
Indices: 883989--884063 Score: 73
Period size: 23 Copynumber: 3.4 Consensus size: 21
883979 AAGTGCTATA
*
883989 TTTTATAATATTATACATATATT
1 TTTTATTATATTAT--ATATATT
*
884012 TTTCTATTA-ATTTTATATATT
1 TTT-TATTATATTATATATATT
884033 TTTTATTATCATTATATTATATT
1 TTTTATTAT-ATTATA-TATATT
884056 TTTT-TTAT
1 TTTTATTAT
884064 TTTTTTTATT
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
20 5 0.11
21 10 0.22
22 9 0.20
23 17 0.38
24 4 0.09
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTTATTATATTATATATATT
Found at i:884349 original size:29 final size:30
Alignment explanation
Indices: 884301--884358 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
884291 ATTTTATCAT
* * **
884301 TTTACTTAATTTATTTTCTTTTCATTTTAA
1 TTTAATTAATTTAATTTCTTACCATTTTAA
884331 TTTAATTAA-TTAATTTCTTACCATTTTA
1 TTTAATTAATTTAATTTCTTACCATTTTA
884359 TCTAACATGG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.28, C:0.10, G:0.00, T:0.62
Consensus pattern (30 bp):
TTTAATTAATTTAATTTCTTACCATTTTAA
Found at i:888899 original size:28 final size:29
Alignment explanation
Indices: 888820--888900 Score: 85
Period size: 28 Copynumber: 2.8 Consensus size: 29
888810 AGATTCAATC
* *
888820 AGAACAAAAAAGGCAAAAACAAAAAAGAAA
1 AGAACAAAAAACG-AAAAAAAAAAAAGAAA
* *
888850 AGAAGAAAAAACGAAGAAAAAAAAAG-AA
1 AGAACAAAAAACGAAAAAAAAAAAAGAAA
* *
888878 AGAACAAAAATC-AAAAAGAAAAA
1 AGAACAAAAAACGAAAAAAAAAAA
888901 GGGACAAAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
27 9 0.21
28 12 0.28
29 11 0.26
30 11 0.26
ACGTcount: A:0.78, C:0.07, G:0.14, T:0.01
Consensus pattern (29 bp):
AGAACAAAAAACGAAAAAAAAAAAAGAAA
Found at i:890466 original size:106 final size:106
Alignment explanation
Indices: 890281--891478 Score: 1876
Period size: 106 Copynumber: 11.3 Consensus size: 106
890271 TCGAGAGTGG
890281 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* * *
890346 ACCGCTGGTTGTCAATAATCAATTTCCCAATTTCAGAGCCA
66 ACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCA
* * *
890387 ATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCATGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* *
890452 ACCGCTGGTTGTCAACAAACAACTTCCCAATTTTAGAGCTA
66 ACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCA
* *
890493 ATTTCAAATTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
*
890558 ACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCA
66 ACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCA
*
890599 ATTTCAACTTCACAACGAAGGATACTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
*
890664 ACCGCTGGTTGTCAACAAACAACTTCCCCATTTCAGAGCCA
66 ACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCA
* * *
890705 ATTTGAACTTCACAGCGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* * **
890770 ACCTCTGGTTGTCAACAAACAATTTCCCAATTTTGGAGCCA
66 ACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCA
** * * **
890811 ATTTCAACTTCACAGTGAAAGATATTGGACTCCAGACAACGCAAGTTCAACTTCATGAATAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* *
890876 ACCGCTGGTTGTCAACAAACAATTTCCCAATTTCGGAGCCA
66 ACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCA
** * *
890917 ATTTCAACTTCACAGTGAAGAATATTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
*
890982 ACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCA
66 ACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCA
** *
891023 ATTTCAACTTCACAACGATTGATATTGGACTCCATACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
*
891088 ACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCA
66 ACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCA
*
891129 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAATTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
891194 ACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCA
66 ACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCA
* * * *
891235 ATTTTAACTTCACAACGAAGGATATTGGACTCGAGACAAAGAAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* *
891300 ACCGCTGGTTGTCAACAAACAATTTCCCAATTTCGGAGCCA
66 ACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCA
* * * * *
891341 ATTTCAACTTCAGAACAAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* * * *
891406 ACGGTTGGTTGTCAACAAACAATTTCCCGA-TTCTAGAGCCA
66 ACCGCTGGTTGTCAACAAACAACTTCCCAATTTC-AGAGCCA
* * *
891447 ATTTTAACTTCACGACGGAGGATATTGGACTC
1 ATTTCAACTTCACAACGAAGGATATTGGACTC
891479 AGAACAATGC
Statistics
Matches: 1011, Mismatches: 80, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
105 3 0.00
106 1008 1.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
ACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCA
Found at i:892261 original size:37 final size:37
Alignment explanation
Indices: 892208--892312 Score: 156
Period size: 37 Copynumber: 2.8 Consensus size: 37
892198 TCTTTTCGTC
892208 CTACTAGGATTTAAACTCCTAAAAATAGGATAGAATT
1 CTACTAGGATTTAAACTCCTAAAAATAGGATAGAATT
* * * *
892245 TTGCTAGGATTTAAACTCCTAAAAATATGATAGAGTT
1 CTACTAGGATTTAAACTCCTAAAAATAGGATAGAATT
* *
892282 CTACTATGATTTAAACTCCTAAAGATAGGAT
1 CTACTAGGATTTAAACTCCTAAAAATAGGAT
892313 CCACAAGCAC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.32
Consensus pattern (37 bp):
CTACTAGGATTTAAACTCCTAAAAATAGGATAGAATT
Found at i:892893 original size:24 final size:24
Alignment explanation
Indices: 892866--892966 Score: 79
Period size: 24 Copynumber: 4.3 Consensus size: 24
892856 CTTTGCATTT
892866 TTATTATTACTATTATATTTATTA
1 TTATTATTACTATTATATTTATTA
* **
892890 TTATTTTTACTATTATATTT-TCC
1 TTATTATTACTATTATATTTATTA
892913 TT-TTATT-CTACTTAT-TTATATTA
1 TTATTATTACTA-TTATATT-TATTA
* *
892936 -TATGTA-TATTTTTATATTTTATTA
1 TTAT-TATTACTATTATA-TTTATTA
892960 TTATTAT
1 TTATTAT
892967 ATTTTTTTAC
Statistics
Matches: 59, Mismatches: 8, Indels: 19
0.69 0.09 0.22
Matches are distributed among these distances:
21 5 0.08
22 10 0.17
23 10 0.17
24 29 0.49
25 5 0.08
ACGTcount: A:0.28, C:0.06, G:0.01, T:0.65
Consensus pattern (24 bp):
TTATTATTACTATTATATTTATTA
Found at i:892967 original size:24 final size:25
Alignment explanation
Indices: 892925--892972 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
892915 TTATTCTACT
892925 TATTTATATTATATGTATATTTTTA
1 TATTTATATTATATGTATATTTTTA
892950 TATTT-TATTATTAT-TATATTTTT
1 TATTTATATTA-TATGTATATTTTT
892973 TTACTTTCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 14 0.64
25 8 0.36
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (25 bp):
TATTTATATTATATGTATATTTTTA
Found at i:893243 original size:2 final size:2
Alignment explanation
Indices: 893236--893282 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
893226 TTACTATTAT
893236 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
893278 TA TA T
1 TA TA T
893283 CTACACAAGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:893655 original size:30 final size:31
Alignment explanation
Indices: 893581--893656 Score: 84
Period size: 30 Copynumber: 2.5 Consensus size: 31
893571 TACTTTGTTA
* * *
893581 TTATTATTTTGTTTATTTGTTTTTATTTATT
1 TTATTATTTTTTTTATTTGTTTATATATATT
* *
893612 TTCTT-TTTCTTTTTCTTT-TTTATATATATT
1 TTATTATTT-TTTTTATTTGTTTATATATATT
893642 TTATTATTTTTTTTA
1 TTATTATTTTTTTTA
893657 CTTACTATTT
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
30 22 0.61
31 14 0.39
ACGTcount: A:0.16, C:0.04, G:0.03, T:0.78
Consensus pattern (31 bp):
TTATTATTTTTTTTATTTGTTTATATATATT
Found at i:893741 original size:29 final size:30
Alignment explanation
Indices: 893693--893750 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
893683 ATTTTATCAT
* * **
893693 TTTACTTAATTTATTTTCTTTTCATTTTAA
1 TTTAATTAATTTAATTTCTTACCATTTTAA
893723 TTTAATTAA-TTAATTTCTTACCATTTTA
1 TTTAATTAATTTAATTTCTTACCATTTTA
893751 TCTAACATGG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.28, C:0.10, G:0.00, T:0.62
Consensus pattern (30 bp):
TTTAATTAATTTAATTTCTTACCATTTTAA
Found at i:894422 original size:169 final size:170
Alignment explanation
Indices: 894074--894839 Score: 633
Period size: 172 Copynumber: 4.5 Consensus size: 170
894064 CGGTTACGAC
* * * * * *
894074 ATAGTGTAAATAAGT-GGCGTTTGTATTCTAACGATTAGGATAATTACCTTACAAGCAATACACC
1 ATAGTGTAAAGAA-TAGGCATTTGTAGTCTAACGATTAGGATAATTGCCTTCCAAGCAATAGACC
* * * ** * *
894138 C--GTGT--TCCTGGCAAATACAATTAATATAGTAAAAAATGAAGGGGAATATTTTGAAAAGTAA
65 CGGGTTTACTCCCGACAAATACAATTACGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAA
* * * **
894199 AATGATTAGTGTATACATGTTGTTCTTGATTATGTGAAAGGA
129 AACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAA
* * *
894241 ATAGTGTAAAGAATAGGCGTTTGTAGTCTAACGATTATGATAATTTCCTTCCAAGCAATAGACCC
1 ATAGTGTAAAGAATAGGCATTTGTAGTCTAACGATTAGGATAATTGCCTTCCAAGCAATAGACCC
* * * * *
894306 GGGTTCTAATCCCGACAAA-ACAA-TAGGATAGTAAAAAATTAATGGAAAATTTTGAAAATTGAA
66 GGGTT-TACTCCCGACAAATACAATTACGATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAA
* *
894369 ACGAGTAGTGTATACGTGTTGTTCTTGATTATTTAAAACAA
130 ACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAA
* * * * * * * * * *
894410 ATAGTTTAAAGAAGAGGCCTTTGTATTGC-ACCGGTTTGGATAATTGCCTTCCATGCAATGGACT
1 ATAGTGTAAAGAATAGGCATTTGTAGT-CTAACGATTAGGATAATTGCCTTCCAAGCAATAGACC
* * ** ** * *
894474 GGGGTTTGACTCTCGGTAAATGTAATTACGATATTAAAAAATTAAGGGAAAATTTTTTAAAAGTA
65 CGGGTTT-ACTCCCGACAAATACAATTACGATAGTAAAAAATTAAGGGAAAA-TTTTGAAAAGTA
* * * * * * * * * **
894539 AAACAAATAGTATTTACTTTTTATGCTTGGTTATGTGAAATGA
128 AAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAA
* * * * *
894582 ATTGTTTAAAGAAAAGGCATTAGTAGTCTAATTG-TTAGGATAATTGCCTT-CAAGGCAATAGAC
1 ATAGTGTAAAGAATAGGCATTTGTAGTCTAA-CGATTAGGATAATTGCCTTCCAA-GCAATAGAC
* * *
894645 TCGGGTTTGACTCCCGA-AAA-ACGTAATTACGATGGTAAAAAATTAAGGGAAATTTTTGAAAAG
64 CCGGGTTT-ACTCCCGACAAATAC--AATTACGATAGTAAAAAATTAAGGGAAAATTTTGAAAAG
* *
894708 TAAAAAGAGTAGTGTATATGTGTTGTTCTTGATTATGTGAAACAA
126 TAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAA
* * * *
894753 ATAGTGT-AAGGATGAGGCATTTATAGTCCAACGATTAGGATAATAATTGCCTTCCAATCCAA-A
1 ATAGTGTAAAGAAT-AGGCATTTGTAGTCTAACGATTAGG---ATAATTGCCTTCCAA-GCAATA
*
894816 GACCCGGGTTCGACTCCCGACAAA
61 GACCCGGGTT-TACTCCCGACAAA
894840 CGCAATGTTG
Statistics
Matches: 470, Mismatches: 105, Indels: 40
0.76 0.17 0.07
Matches are distributed among these distances:
166 1 0.00
167 57 0.12
168 1 0.00
169 116 0.25
170 25 0.05
171 98 0.21
172 133 0.28
173 1 0.00
174 29 0.06
175 9 0.02
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (170 bp):
ATAGTGTAAAGAATAGGCATTTGTAGTCTAACGATTAGGATAATTGCCTTCCAAGCAATAGACCC
GGGTTTACTCCCGACAAATACAATTACGATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAA
CGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAA
Found at i:895464 original size:660 final size:656
Alignment explanation
Indices: 894188--895501 Score: 1410
Period size: 660 Copynumber: 2.0 Consensus size: 656
894178 GGGGAATATT
* * * * **
894188 TTGAAAAGTAAAATGATTAGTGTATACATGTTGTTCTTGATTATGTGAAAGGAATAGTGTAAAGA
1 TTGAAAAGTAAAACGAGTAGTGTATACATGTTGGTCTTGATTATGAGAAACAAATAGTGTAAAGA
* * * * * *
894253 ATAGGCGTTTGTAGTCTAACGATTATGATAATTTCCTTCCAAGCAATAGACCCGGGTTCTAATCC
66 AGAGCCGTTTGTAGTCCAACAATTAGGATAATTTCCTTCCAAGCAATAGACCCGGGTTCGAATCC
* * *
894318 CGACAAAACAATAGGATAGTAAAAAATTAATGGAAAATTTTGAAAATTGAAACGAGTAGTGTATA
131 CGACAAAACAATACGATAGTAAAAAATTAATGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATA
* * * * * * * * * *
894383 CGTGTTGTTCTTGATTATTTAAAACAAATAGTTTAAAGAAGAGGCCTTTGTATTGCACCGGTTTG
196 -GCGTTATTATCGATTATGTAAAACAAATAGTTTAAAGAAAAGGCCTTTGTAGTCCAACGGTTAG
* ** ** * * *
894448 GATAATTGCCTTCCATGCAATGGACTGGGGTTTGACTCTCGGTAAATGTAATTACGATATTAAAA
260 GATAATTGCCTTCCAAGCAATGGACCCGGGTTCAACTCTCGGAAAATGCAATTACGATAGTAAAA
* * ** * * *
894513 AATTAAGGGAAAATTTTTTAAAAGTAAAACAAATAGTATTTACTTTTTATGCTTGGTTATGTGAA
325 AATTAAGGGAAAATTTTTGAAAAGTAAAACAAATAATACATACGTGTTATGCTTGATTATGTGAA
** * * * * * * *
894578 ATGAATTGTTTAAAGAAAAGGCATTAGTAGTCTAATTGTTAGGATAATTGCCTTCAAGGCAATAG
390 ACAAATAGTGTAAAGAAAAGACATTAGTAGTCCAATCGTTAGGATAATTGCCTCCAAGACAATAG
* * * * * *
894643 ACTCGGGTTTGACTCCCGAAAAACGTAATTACGATGGTAAAAAATTAAGGGAAATTTTTGAAAAG
455 ACCCGGGTTCGACTCCCAAAAAACATAATTACGATAGTAAAAAATAAAGGGAAATTTTTGAAAAG
* ** * ** *
894708 TAAAAAGAGTAGTGTATATGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAGGATGAGGCAT
520 TAAAAAGAATAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATACTGTAAAAAAGAGGCAT
*
894773 TTATAGTCCAACGATTAGGATAATAATTGCCTTCCAATCCAA-AGACCCGGGTTCGACTCCCGAC
585 TTATAATCCAACGATTAGG--AATAATTGCCTTCCAA-CCAATAGACCCGGGTTCGACTCCCGAC
894837 AAACGCAATG
647 AAACGCAATG
* * ** * *
894847 TTGAATAGTAAAACGAGTGGTGTATATGTGTTGGTCTTGATTATGAGAAACAAATAGTTTAAATA
1 TTGAAAAGTAAAACGAGTAGTGTATACATGTTGGTCTTGATTATGAGAAACAAATAGTGTAAAGA
** *
894912 AGAGCCGTTTGTAGTCCAACAATTAGGATAATTTCCTTCCAAGCAATAGATTCGGGTTCGACTCC
66 AGAGCCGTTTGTAGTCCAACAATTAGGATAATTTCCTTCCAAGCAATAGACCCGGGTTCGAATCC
** * ** * *
894977 CGGTAAACACAATTACTATAGTAAAAGAATTAA-GGGGAGTTGTTGAAAAGTAAAATGAGTAGTG
131 CGACAAA-ACAA-TACGATAGTAAAA-AATTAATGGAAAATT-TTGAAAAGTAAAACGAGTAGTG
* * *
895041 TAT-GCGTTATTATCGATTATGTGAAACAAATAGTTTAAGGAAAAGGCGTTTGTAGTCCAACGGT
192 TATAGCGTTATTATCGATTATGTAAAACAAATAGTTTAAAGAAAAGGCCTTTGTAGTCCAACGGT
895105 TAGGATAATTGCCTTCCAAGCAATAGG-CCCGGGTTCAACTCAT-GGAAAATGCAATTACGATAG
257 TAGGATAATTGCCTTCCAAGCAAT-GGACCCGGGTTCAACTC-TCGGAAAATGCAATTACGATAG
* * * *
895168 TAAAAAATTAAGGGGAAAA-TTTTGAAAAGTAAAACAAATAATGCATAGGTGTTGTTCTTGATTA
320 TAAAAAATTAA-GGGAAAATTTTTGAAAAGTAAAACAAATAATACATACGTGTTATGCTTGATTA
* *
895232 TGTGAAACAAATAGTGTAAAGAAGAGACATTTGTAGTCCAA-CGATTAGGATAATTGCCACTCCA
384 TGTGAAACAAATAGTGTAAAGAAAAGACATTAGTAGTCCAATCG-TTAGGATAATTG-C-CTCCA
** * * * *
895296 A-ACTGTAGTCCCGGGTTCGACTCTCAAAAAATATAATTTCGATAGTAAAAAATAAAGTGGTAAA
446 AGACAATAGACCCGGGTTCGACTCCCAAAAAACATAATTACGATAGTAAAAAATAAAG-GG-AAA
* * * *
895360 -TTTTGAAATAGTAAAACGAATAGTTTTTACCAT-TTGTTCTTGATTATGTGAAACTAATACTGT
509 TTTTTGAAA-AGTAAAAAGAATAGTGTATA-CATGTTGTTCTTGATTATGTGAAACAAATACTGT
* ** * * *
895423 AAAAAAGAGGCATTTGTAATCCTATTG-TTAGG-ATGATTGCCTTGCAAGCAATAGACCCGGGTT
572 AAAAAAGAGGCATTTATAATCC-AACGATTAGGAATAATTGCCTTCCAACCAATAGACCCGGGTT
* * *
895486 TGAGTCCCGCCAAACG
636 CGACTCCCGACAAACG
895502 AAATTACGAT
Statistics
Matches: 532, Mismatches: 107, Indels: 31
0.79 0.16 0.05
Matches are distributed among these distances:
659 118 0.22
660 229 0.43
661 70 0.13
662 43 0.08
663 69 0.13
664 3 0.01
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (656 bp):
TTGAAAAGTAAAACGAGTAGTGTATACATGTTGGTCTTGATTATGAGAAACAAATAGTGTAAAGA
AGAGCCGTTTGTAGTCCAACAATTAGGATAATTTCCTTCCAAGCAATAGACCCGGGTTCGAATCC
CGACAAAACAATACGATAGTAAAAAATTAATGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATA
GCGTTATTATCGATTATGTAAAACAAATAGTTTAAAGAAAAGGCCTTTGTAGTCCAACGGTTAGG
ATAATTGCCTTCCAAGCAATGGACCCGGGTTCAACTCTCGGAAAATGCAATTACGATAGTAAAAA
ATTAAGGGAAAATTTTTGAAAAGTAAAACAAATAATACATACGTGTTATGCTTGATTATGTGAAA
CAAATAGTGTAAAGAAAAGACATTAGTAGTCCAATCGTTAGGATAATTGCCTCCAAGACAATAGA
CCCGGGTTCGACTCCCAAAAAACATAATTACGATAGTAAAAAATAAAGGGAAATTTTTGAAAAGT
AAAAAGAATAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATACTGTAAAAAAGAGGCATT
TATAATCCAACGATTAGGAATAATTGCCTTCCAACCAATAGACCCGGGTTCGACTCCCGACAAAC
GCAATG
Done.