Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006270.1 Hibiscus syriacus cultivar Beakdansim tig00014949_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 949592
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
File 5 of 5
Found at i:896141 original size:173 final size:172
Alignment explanation
Indices: 894847--897778 Score: 2156
Period size: 172 Copynumber: 17.1 Consensus size: 172
894837 AAACGCAATG
* * ** * * * *
894847 TTGAATAGTAAAACGAGTGGTGTATATGTGTTGGTCTTGATTATGAGAAACAAATAGTTTAAATA
1 TTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* ** * ** *
894912 AGAGCCGTTTGTAGTCCAACAATTAGGATAATTTCCTTCCAAGCAATAGATTCGGGTTCGACTCC
66 AGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCT
*** ** * *
894977 CGGTAAACACAATTACTATAGTAAAAGAATTAAGGGG--AGTT
131 CAACAAATGCAATTACGATAGTAAAA-AATTAAGGGGAAAATT
* * * * * * *
895018 GTTGAAAAGTAAAATGAGTAGTGTATGC--GTTATTATCGATTATGTGAAACAAATAGTTTAAGG
1 -TTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * *
895081 AAAAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGGCCCGGGTTCAACTC
65 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTC
**
895146 ATGGA-AAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
130 -TCAACAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
* * * * **
895189 TTGAAAAGTAAAACAAATAATGCATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
1 TTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* * * * * ** *
895254 AGAGACATTTGTAGTCCAACGATTAGGATAATTGCCACTCCAAACTGTAGTCCCGGGTTCGACTC
66 AGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCC-TTCCAAGCAATAGACCCGGGTTCGACTC
* ** * * * *
895319 TCAAAAAATATAATTTCGATAGTAAAAAATAAAGTGGTAAATT
130 TCAACAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
* * * * *
895362 TTGAAATAGTAAAACGAATAGTTTTTACCAT-TTGTTCTTGATTATGTGAAACTAATACTGTAAA
1 TTGAAA-AGTAAAACGAGTAGTGTATA-CATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAA
* * * * ** * * * *
895426 AAAGAGGCATTTGTAATCCTATTGTTAGGATGATTGCCTTGCAAGCAATAGACCCGGGTTTGAGT
64 GAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACT
* ** * * *
895491 CCCGCCAAACGAAATTACGATTGTAAAAAATTAAGGGGAAAATT
129 CTCAACAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
* * * * * * * * * *
895535 TTGAAAAATAAAAAAAATAGTATATATATATATTTATACCTTTTGTGCTTGATAATATGAAACAA
1 TTGAAAAGT----AAAA-CG-----A-GTA-GTGTATACATGTTGTTCTTGATTATGTGAAACAA
* * * * * *
895600 ATAGTGT--A-AAGAGGAGTTTTTAGTCCAACGGTTAGGTTGATTGCCTTCCAAGAAATAGACTC
54 ATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCC
* * * * *
895662 TGGTTTGACT-TACAATAAATGCAATTACAATAGTACAAAATTAAGGGG-AAATT
119 GGGTTCGACTCT-CAACAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
* * * * * *** *
895715 TTGGAAAAGTAAAACGATTAGCGTATGCCTTTTGTTCTTGATTATGTGAATTGAATACTGTAAAG
1 TT-GAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * * *** *
895780 AAGAGGCATTTGTAGTCCAACTGTTAGGATAATTTCCTTCCAAGCAATAGGGTCGGGTTTGACT-
65 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTC
** * ** * *
895844 TCTGGCAAATGCAATAATAATCGT-AAAAATTAA-AGGAAAA--
130 TC-AACAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
* * ** ** * **
895884 TTGAAAAGTAAAATGA-AATGTGTATA-ACT-TTCGAGCTCAATTATGTTAAAGGAATAGTGTAA
1 TTGAAAAGTAAAACGAGTA-GTGTATACA-TGTT-GTTCTTGATTATGTGAAACAAATAGTGTAA
* * * * * *
895946 AGAAGAGGTGTTTGTGGTCCAACAGTTAGGATAATTACATTCCAAGCAATAAACCCGGGTTCGAC
63 AGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGAC
* * *
896011 TCTCAACATATGCAACTACGATAGTAAAAAGTTAAGGGGAAAATTT
128 TCTCAACAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAA-TT
* * * * * **
896057 TTAAAAAGTAAAAAGAGTAGTGTATGCATATTGTTCTTGATTATGTAAAATGAATAGTGTAAAGA
1 TTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* * * *
896122 AGAGGCGTTTGTAGTCCAACGATTATGATAATTTCCTTCCAAGCAATAGATCCGGGTTCGACTC-
66 AGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCT
* ** * *
896186 CAGGCAAACACAATTACGATAGTTAAAAATTAA-GGGAAATTTT
131 CA-ACAAATGCAATTACGATAGTAAAAAATTAAGGGGAAA-ATT
** * *
896229 TTGAAAAGTAAAACGAGTAGTGTATACGCGTTGTTCTTGATTATGTGAAACATATAGTTTAAAGA
1 TTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* * * * *
896294 AGAGGTGTTTGTAGTCTAACGATTAGGATAATTGCCTTCCAAGCAATAGTCTCGGGTTCGACTCT
66 AGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCT
* ** * * * * *
896359 -AGGCAAACACAATCACAATAATAAAATACTTATGGGGAAAATT
131 CA-ACAAATGCAATTACGATAGTAAAA-AATTAAGGGGAAAATT
* * * * * * *
896402 TTAAAAAGTAAAACGAATAGTGTAAACATTTTGTTCTTGATTATGTGAAACGAATAATGTAAAAA
1 TTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
** * * * * * * *
896467 ATTGGTGTTTGTAGTCTAACGATTAGGATAATCT-CTTTCCAAGCAATAGGCCCAGGTTCTACTC
66 AGAGGCGTTTGTAGTCCAACGGTTAGGATAAT-TGCCTTCCAAGCAATAGACCCGGGTTCGACTC
* * *** * * * *
896531 CCGACAAAAAAAATTTAGGATAGTAAAGAATTATGGGAAAAATT
130 TCAACAAATGCAA-TTACGATAGTAAAAAATTAAGGGGAAAATT
* * * ** * * * * *
896575 TTGAAATGTAAAACGAGTAGTTTGTATGTGTTGTTCTTGATTATTTTAAACAAATTGTTTAAGGA
1 TTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* * * * * * **
896640 AGAGGCCTTTGTAGTCCAATGGTTTGGATAATTACCTTCCATGCAATTGACTGGGGTTCGACTCT
66 AGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCT
** * * * * * *
896705 C-GTAAATGTAGTTACGATAATAAAAAATTTAGTGGAAATTT
131 CAACAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
* * * * * * * *
896746 TTGAAAAGTAAAATGAGTAGTGTATTCGTGGTGTTCTTGATTATGTAAAATAAATAGTGTGAATA
1 TTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* * * * * *
896811 AGAGGTGTTTGTAGTCCAATGGTTAAGATAATTGCCTTCCAAGCAATAGTCCCAGGTTCGACTCC
66 AGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCT
* * * * * *
896876 CGACAAACGCGATCACAATAATAAAATAATTAAGGGGAAAATT
131 CAACAAATGCAATTACGATAGTAAAA-AATTAAGGGGAAAATT
* * * ** *
896919 TTAAAAAGTAAAACGAGTA----A-ACATTTTGTGCTTGATTATGTGAAATGAATAATGTAAAGA
1 TTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* * * * * *
896979 AGATGCGTTTGTAGTCCAA----T-GG-TTATTGCTTTCCAAGCAATAGTCCCAGGTTCGACTCC
66 AGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCT
** ** * * * *
897038 CGGCAAACACGATCACAATAATAAAATAATTAAGGGGAAAATT
131 CAACAAATGCAATTACGATAGTAAAA-AATTAAGGGGAAAATT
* * * ** *
897081 TTAAAAAGTAAAACGAGTA----A-ACATTTTGTGCTTGATTATGTGAAATGAATAATGTAAAGA
1 TTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* * * * * *
897141 AGATGCGTTTGTAGTCCAATGGTTAGGATAATTACCTTCCAAGCAATAGTCTCGGGTTTGACTC-
66 AGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCT
* * * * *
897205 CTAGCTAATGTAATTACGATAGTAAAAAAATAAGGAG-AAATT
131 C-AACAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
* * * * *
897247 TTGAAAAGTAAAACGAGTAGTGTGTACATGTTGTTCTTGATTATTTGAAGCAAATAGTTTAAGGA
1 TTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* *** * * * * ***
897312 AGAGGCCTTTGTAGTCCAGTTGTTTGGATAATTGCCTTCTATGCAATGGATTGGGGTTCGACTCT
66 AGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCT
*** * * **
897377 CGGTAAATGTAATTACGATATTAAAAAATTAAGGGGAATTTT
131 CAACAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
* * * * * * * *
897419 TTGAAAAGTAAAATGAATAGTGTATACCT-TTCATGCTTGATTATGTGAAACGAATTGTGTAAAA
1 TTGAAAAGTAAAACGAGTAGTGTATACATGTT-GTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * * * * * *
897483 AAGAGGCATTAGTAGTCTAACGGTTAGGATAATTACCTTCCAATCAATAGACTCGTGTTCGACTC
65 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTC
* * * * * *
897548 CCGGA-AAACGTAATTACGATAGTAAACAATTAAGGAGAAAATT
130 TC-AACAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
**
897591 TTGAAAAGTAAAACGAGTAGTGTATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
1 TTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
** * * * *
897656 AGAGGCGTTTGTAGTCCAACCATTAGGATAATTGCATCATTCCAAACAGTAAACCCGAGTTCGAC
66 AGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGC--C-TTCCAAGCAATAGACCCGGGTTCGAC
* * * * * *
897721 TCGCGGA-AAATGCAATTTCGATAGTGAAAAATTAAGTGGTAAATT
128 TCTC-AACAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
897766 TTGAAAAGTAAAA
1 TTGAAAAGTAAAA
897779 TGAATAGTTT
Statistics
Matches: 2193, Mismatches: 495, Indels: 141
0.78 0.17 0.05
Matches are distributed among these distances:
162 155 0.07
163 1 0.00
164 1 0.00
166 24 0.01
167 14 0.01
168 202 0.09
169 53 0.02
170 133 0.06
171 257 0.12
172 539 0.25
173 507 0.23
174 97 0.04
175 71 0.03
176 5 0.00
177 5 0.00
180 7 0.00
181 85 0.04
182 2 0.00
183 5 0.00
184 30 0.01
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (172 bp):
TTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
AGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCT
CAACAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATT
Found at i:896406 original size:345 final size:343
Alignment explanation
Indices: 894847--898360 Score: 2295
Period size: 346 Copynumber: 10.3 Consensus size: 343
894837 AAACGCAATG
* * * * * * *
894847 TTGAATAGTAAAACGAGTGGTGTATATGTGTTGGTCTTGATTATGAGAAACAAATAGTTTAAATA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* * *
894912 AGAGCCGTTTGTAGTCCAACAATTAGGATAATTTCCTTCCAAGCAATAGAT-TCGGGTTCGACTC
66 AGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCCTTCCAAGCAATAG-TCTCGGGTTCGACTC
** * * * * * *
894976 CCGGTAAACACAATTACTATAGTAAAAGAATTAAGGGG--AGTTGTTGAAAAGTAAAATGAGTAG
130 TAGGCAAATACAATTACGATAGTAAAA-AATTAAGGGGAAAATT-TTAAAAAGTAAAACGAGTAG
* * * ** * * *
895039 TGTATGCGTTATT-ATC--GATTATGTGAAACAAATAGTTTAAGGAAAAGGCGTTTGTAGTCCAA
193 TGTATACATT-TTGTTCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAA
** * ** * *
895101 CGGTTAGGATAATTGCCTTCCAAGCAATAGGCCCGGGTTCAACTCATGGAAAATGCAATTACGAT
257 CGGTTAGGATAATTGCCTTCCAAGCAATAGATCCGGGTTCGACTCCCGGCAAACGCAATTACGAT
895166 AGTAAAAAATTAAGGGGAAAATT
322 AGTAAAAAATTAA-GGGAAAATT
* * * * *
895189 TTGAAAAGTAAAACAAATAATGCATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* * * * ** *
895254 AGAGACATTTGTAGTCCAACGATTAGGATAATTGCCACTCCAAACTGTAGTCCCGGGTTCGACTC
66 AGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCC-TTCCAAGCAATAGTCTCGGGTTCGACTC
** * * * * * * *
895319 TCA-AAAAATATAATTTCGATAGTAAAAAATAAAGTGGTAAATTTTGAAATAGTAAAACGAATAG
130 T-AGGCAAATACAATTACGATAGTAAAAAATTAAGGGGAAAATTTT-AAAAAGTAAAACGAGTAG
* * * * * * *
895383 TTTTTACCA-TTTGTTCTTGATTATGTGAAACT-AATACTGTAAAAAAGAGGCATTTGTAATCCT
193 TGTATA-CATTTTGTTCTTGATTATGTGAAA-TGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCA
** * * * * * * *
895446 ATTGTTAGGATGATTGCCTTGCAAGCAATAGACCCGGGTTTGAGTCCCGCCAAACGAAATTACGA
256 ACGGTTAGGATAATTGCCTTCCAAGCAATAGATCCGGGTTCGACTCCCGGCAAACGCAATTACGA
*
895511 TTGTAAAAAATTAAGGGGAAAATT
321 TAGTAAAAAATTAA-GGGAAAATT
* * * * * * * * * *
895535 TTGAAAAATAAAAAAAATAGTATATATATATATTTATACCTTTTGTGCTTGATAATATGAAACAA
1 TTGAAAAGT----AAAA-CG-----A-GTA-GTGTATACGTGTTGTTCTTGATTATGTGAAACAA
* * * * * * *
895600 ATAGTGT--A-AAGAGGAGTTTTTAGTCCAACGGTTAGGTTGATTGCCTTCCAAGAAATAGACTC
54 ATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCCTTCCAAGCAATAGTCTC
* * *** * * * *
895662 TGGTTTGACT-TACAATAAATGCAATTACAATAGTACAAAATTAAGGGG-AAATTTTGGAAAAGT
119 GGGTTCGACTCTA-GGCAAATACAATTACGATAGTAAAAAATTAAGGGGAAAATTTT-AAAAAGT
* * * * * * *
895725 AAAACGATTAGCGTATGCCTTTTGTTCTTGATTATGTGAATTGAATACTGTAAAGAAGAGGCATT
182 AAAACGAGTAGTGTATACATTTTGTTCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCGTT
* * * * * * *
895790 TGTAGTCCAACTGTTAGGATAATTTCCTTCCAAGCAATAGGGT-CGGGTTTGACTTCTGGCAAAT
247 TGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATA-GATCCGGGTTCGACTCCCGGCAAAC
* ** * *
895854 GCAATAATAATCGT-AAAAATTAAAGGAAAA--
311 GCAATTACGATAGTAAAAAATTAAGGGAAAATT
* * ** ** * **
895884 TTGAAAAGTAAAATGA-AATGTGTATAAC-T-TTCGAGCTCAATTATGTTAAAGGAATAGTGTAA
1 TTGAAAAGTAAAACGAGTA-GTGTAT-ACGTGTT-GTTCTTGATTATGTGAAACAAATAGTGTAA
* * * * ** *
895946 AGAAGAGGTGTTTGTGGTCCAAC-AGTTAGGATAATTACATTCCAAGCAATAAACCCGGGTTCGA
63 AGAAGAGGCGTTTGTAGTCCAACGA-TTAGGATAATTGCCTTCCAAGCAATAGTCTCGGGTTCGA
* * * * * *
896010 CTCTCA-ACATATGCAACTACGATAGTAAAAAGTTAAGGGGAAAATTTTTAAAAAGTAAAAAGAG
127 CTCT-AGGCAAATACAATTACGATAGTAAAAAATTAAGGGGAAAA-TTTTAAAAAGTAAAACGAG
* * *
896074 TAGTGTATGCATATTGTTCTTGATTATGTAAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCC
190 TAGTGTATACATTTTGTTCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCC
* * * * *
896139 AACGATTATGATAATTTCCTTCCAAGCAATAGATCCGGGTTCGACTCCAGGCAAACACAATTACG
255 AACGGTTAGGATAATTGCCTTCCAAGCAATAGATCCGGGTTCGACTCCCGGCAAACGCAATTACG
* *
896204 ATAGTTAAAAATTAAGGGAAATTTT
320 ATAGTAAAAAATTAAGGGAAA-ATT
* * *
896229 TTGAAAAGTAAAACGAGTAGTGTATACGCGTTGTTCTTGATTATGTGAAACATATAGTTTAAAGA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* *
896294 AGAGGTGTTTGTAGTCTAACGATTAGGATAATTGCCTTCCAAGCAATAGTCTCGGGTTCGACTCT
66 AGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCCTTCCAAGCAATAGTCTCGGGTTCGACTCT
* * * * * * *
896359 AGGCAAACACAATCACAATAATAAAATACTTATGGGGAAAATTTTAAAAAGTAAAACGAATAGTG
131 AGGCAAATACAATTACGATAGTAAAA-AATTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAGTG
* * * * ** * * *
896424 TAAACATTTTGTTCTTGATTATGTGAAACGAATAATGTAAAAAATTGGTGTTTGTAGTCTAACGA
195 TATACATTTTGTTCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGG
* ** * * * *** *
896489 TTAGGATAATCT-CTTTCCAAGCAATAGGCCCAGGTTCTACTCCCGACAAAAAAAATTTAGGATA
260 TTAGGATAAT-TGCCTTCCAAGCAATAGATCCGGGTTCGACTCCCGGCAAACGCAA-TTACGATA
* *
896553 GTAAAGAATTATGGGAAAAATT
323 GTAAAAAATTAAGGG-AAAATT
* * * * * * * * *
896575 TTGAAATGTAAAACGAGTAGTTTGTATGTGTTGTTCTTGATTATTTTAAACAAATTGTTTAAGGA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* * * * * * * * *
896640 AGAGGCCTTTGTAGTCCAATGGTTTGGATAATTACCTTCCATGCAATTGACTGGGGTTCGACTCT
66 AGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCCTTCCAAGCAATAGTCTCGGGTTCGACTCT
* * ** * * * * * * *
896705 -CGTAAATGTAGTTACGATAATAAAAAATTTAGTGGAAATTTTTGAAAAGTAAAATGAGTAGTGT
131 AGGCAAATACAATTACGATAGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAGTGT
* * ** * * * * * *
896769 ATTCGTGGTGTTCTTGATTATGTAAAATAAATAGTGTGAATAAGAGGTGTTTGTAGTCCAATGGT
196 ATACATTTTGTTCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGT
* * * * * * *
896834 TAAGATAATTGCCTTCCAAGCAATAG-TCCCAGGTTCGACTCCCGACAAACGCGATCACAATAAT
261 TAGGATAATTGCCTTCCAAGCAATAGAT-CCGGGTTCGACTCCCGGCAAACGCAATTACGATAGT
896898 AAAATAATTAAGGGGAAAATT
325 AAAA-AATTAA-GGGAAAATT
* * * * ** *
896919 TTAAAAAGTAAAACGAGTA----A-ACATTTTGTGCTTGATTATGTGAAATGAATAATGTAAAGA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* * * * * *
896979 AGATGCGTTTGTAGTCC-A--A-T-GG-TTATTGCTTTCCAAGCAATAGTCCCAGGTTCGACTCC
66 AGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCCTTCCAAGCAATAGTCTCGGGTTCGACTCT
* * * * * *
897038 CGGCAAACACGATCACAATAATAAAATAATTAAGGGGAAAATTTTAAAAAGTAAAACGAGTA---
131 AGGCAAATACAATTACGATAGTAAAA-AATTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAGTG
* * * *
897100 -A-ACATTTTGTGCTTGATTATGTGAAATGAATAATGTAAAGAAGATGCGTTTGTAGTCCAATGG
195 TATACATTTTGTTCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGG
* * ** * * *
897163 TTAGGATAATTACCTTCCAAGCAATAG-TCTCGGGTTTGACTCCTAGCTAATGTAATTACGATAG
260 TTAGGATAATTGCCTTCCAAGCAATAGATC-CGGGTTCGACTCCCGGCAAACGCAATTACGATAG
*
897227 TAAAAAAATAA-GGAGAAATT
324 TAAAAAATTAAGGGA-AAATT
* * * * * *
897247 TTGAAAAGTAAAACGAGTAGTGTGTACATGTTGTTCTTGATTATTTGAAGCAAATAGTTTAAGGA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* ** * * * * *
897312 AGAGGCCTTTGTAGTCCAGTTG-TTTGGATAATTGCCTTCTATGCAATGGAT-TGGGGTTCGACT
66 AGAGGCGTTTGTAGTCCA-ACGATTAGGATAATTGCCTTCCAAGCAATAG-TCTCGGGTTCGACT
* * ** * ** * * *
897375 CTCGGTAAATGTAATTACGATATTAAAAAATTAAGGGGAATTTTTTGAAAAGTAAAATGAATAGT
129 CTAGGCAAATACAATTACGATAGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAGT
* ** * * * * * * *
897440 GTATACCTTTCATGCTTGATTATGTGAAACGAATTGTGTAAAAAAGAGGCATTAGTAGTCTAACG
194 GTATACATTTTGTTCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACG
* * * * *
897505 GTTAGGATAATTACCTTCCAATCAATAGA-CTCGTGTTCGACTCCCGGAAAACGTAATTACGATA
259 GTTAGGATAATTGCCTTCCAAGCAATAGATC-CGGGTTCGACTCCCGGCAAACGCAATTACGATA
*
897569 GTAAACAATTAAGGAGAAAATT
323 GTAAAAAATTAAGG-GAAAATT
*
897591 TTGAAAAGTAAAACGAGTAGTGTATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
1 TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
* * * ** * *
897656 AGAGGCGTTTGTAGTCCAACCATTAGGATAATTGCATCATTCCAAACAGTAAACCCGAGTTCGAC
66 AGAGGCGTTTGTAGTCCAACGATTAGGATAATTGC--C-TTCCAAGCAATAGTCTCGGGTTCGAC
** * * * * * * *
897721 TCGCGGAAAATGCAATTTCGATAGTGAAAAATTAAGTGGTAAATTTTGAAAAGT--AA--A--A-
128 TCTAGGCAAATACAATTACGATAGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAG
* * * * * * *
897779 TG---A-A--TAG----T--TT-T-T---A--CATACTCTAAAGAAGAGGCATTTGTAGTCCTAT
193 TGTATACATTTTGTTCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAAC
* * * * * * * *
897825 TGTTAGGATAATTGCCTTACAAGCAATCA-ACCCGGGTTTGAGTCCTGGTAAACGAAATTACGAT
258 GGTTAGGATAATTGCCTTCCAAGCAAT-AGATCCGGGTTCGACTCCCGGCAAACGCAATTACGAT
*
897889 TGTAAAAAATTAAGGGGAAAATT
322 AGTAAAAAATTAA-GGGAAAATT
* * * * * * * *
897912 TTGAAAAATAAAACCAATAGTATATATATACCTTTTGTTCTTGATAATATG-AACTAAATAGTGT
1 TTGAAAAGTAAAA-C--GAGTA-GTGTATACGTGTTGTTCTTGATTATGTGAAAC-AAATAGTGT
* * * * * * * *** *
897976 --A-AAGAGGAGTTTTTAGTCCAATGGTTAGGATGATTGCCTTACAAGCAATAGACTATAGTTTG
61 AAAGAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCCTTCCAAGCAATAGTCTCGGGTTCG
* * * * * ** *
898038 A-T-TTGCTGCAAATGCAATTACAATAGTAAAATATTAAGGGG-AAATTTTGGAAACTTAAAATG
126 ACTCTAG--GCAAATACAATTACGATAGTAAAAAATTAAGGGGAAAATTTT-AAAAAGTAAAACG
* * * * * ** * * *
898100 ATTAGCGTATATATATTTTGTTCGTAATTATGTGAAACAAATACTGTAAATAAGAGGTGTTTGTA
188 AGTA--GTGTATACATTTTGTTCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCGTTTGTA
* ** * * * * *
898165 GTCCAACTGTTAGGATAAATT-CCTTCCAAGCAATAGGCCCAGGTTTGACT-TCTG-AAAAGCAG
251 GTCCAACGGTTAGGAT-AATTGCCTTCCAAGCAATAGATCCGGGTTCGACTCCCGGCAAACGC--
* *
898227 AATTACGATTGTAAAAAGTTAAGGGGAAAATT
313 AATTACGATAGTAAAAAATTAA-GGGAAAATT
* * * * * * *
898259 TTGAAAAGCAAAA-GAAATAATATATACCTTTTGTTCTTGATTATGTGAAACAAATAGTGCAAAA
1 TTGAAAAGTAAAACG-AGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTG-TAAA
* * ** * *
898323 GATG-GGCGTTTTTAGTTTAACGGTTAGGATGATTGCCT
64 GAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCCT
898361 GACTCATTGC
Statistics
Matches: 2481, Mismatches: 556, Indels: 266
0.75 0.17 0.08
Matches are distributed among these distances:
317 1 0.00
318 8 0.00
319 50 0.02
320 1 0.00
321 106 0.04
322 35 0.01
323 3 0.00
324 7 0.00
325 31 0.01
326 1 0.00
327 4 0.00
328 26 0.01
329 6 0.00
330 104 0.04
331 2 0.00
332 1 0.00
333 73 0.03
334 21 0.01
335 31 0.01
336 2 0.00
337 29 0.01
338 36 0.01
339 89 0.04
340 85 0.03
341 130 0.05
342 116 0.05
343 202 0.08
344 277 0.11
345 270 0.11
346 298 0.12
347 164 0.07
348 4 0.00
349 8 0.00
350 4 0.00
351 6 0.00
352 12 0.00
353 125 0.05
354 45 0.02
355 30 0.01
356 2 0.00
357 3 0.00
358 33 0.01
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (343 bp):
TTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA
AGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCCTTCCAAGCAATAGTCTCGGGTTCGACTCT
AGGCAAATACAATTACGATAGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAGTGT
ATACATTTTGTTCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGT
TAGGATAATTGCCTTCCAAGCAATAGATCCGGGTTCGACTCCCGGCAAACGCAATTACGATAGTA
AAAAATTAAGGGAAAATT
Found at i:897038 original size:162 final size:162
Alignment explanation
Indices: 896042--897165 Score: 643
Period size: 173 Copynumber: 6.6 Consensus size: 162
896032 TAGTAAAAAG
* * * * *
896042 TTAAGGGGAAAATTTTTAAAAAGTAAAAAGAGTAGTGTATGCATATTGTTCTTGATTATGTAAAA
1 TTAAGGGGAAAA-TTTTAAAAAGTAAAACGAGTA----A-ACATTTTGTGCTTGATTATGTGAAA
* * * * *
896107 TGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGATTATGATAATTTCCTTCCAAGCAATAGA
60 TGAATAATGTAAAGAAGATGCGTTTGTAGT-C--C-A--ATGGTTATTGCCTTCCAAGCAATAG-
* * * * * * * *
896172 T-CCGGGTTCGACTCCAGGCAAACACAATTACGATAGTTAAA-AA
118 TCCCAGGTTCGACTCCCGACAAACACGATCACAATAATAAAATAA
* * *** *
896215 TTAA-GGGAAATTTTTTGAAAAGTAAAACGAGTAGTGTATACGCGTTGTTCTTGATTATGTGAAA
1 TTAAGGGGAAA-ATTTTAAAAAGTAAAACGAGTA----A-ACATTTTGTGCTTGATTATGTGAAA
* * * * * * *
896279 -CATATAGTTTAAAGAAGAGGTGTTTGTAGTCTAACGATTAGGATAATTGCCTTCCAAGCAATAG
60 TGA-ATAATGTAAAGAAGATGCGTTTGTAGTC---C-AAT-GG-TTATTGCCTTCCAAGCAATAG
* * ** * * *
896343 TCTCGGGTTCGACTCTAGGCAAACACAATCACAATAATAAAATAC
118 TCCCAGGTTCGACTCCCGACAAACACGATCACAATAATAAAATAA
* * *
896388 TTATGGGGAAAATTTTAAAAAGTAAAACGAATAGTGTAAACATTTTGTTCTTGATTATGTGAAAC
1 TTAAGGGGAAAATTTTAAAAAGTAAAACG---A--GTAAACATTTTGTGCTTGATTATGTGAAAT
* * * *
896453 GAATAATGTAAA-AA-ATTGGTGTTTGTAGTCTAACGATTAGGATAATCT-CTTTCCAAGCAATA
61 GAATAATGTAAAGAAGA-T-GCGTTTGTAGTC---C-AAT-GG-TTAT-TGCCTTCCAAGCAATA
* * * ** * ** * *
896515 GGCCCAGGTTCTACTCCCGACAAAAAAAATTTAGGATAGT-AAAGAA
117 GTCCCAGGTTCGACTCCCGACAAACACGA-TCACAATAATAAAATAA
* * * * *** * * * *
896561 TTATGGGAAAAATTTTGAAATGTAAAACGAGTAGTTTGTATGTGTTGTTCTTGATTATTTTAAAC
1 TTAAGGGGAAAATTTTAAAAAGTAAAACGAGTA---AACAT-T-TTGTGCTTGATTATGTGAAAT
* ** * * * * * * * *
896626 AAATTGTTTAAGGAAGAGGCCTTTGTAGTCCAATGGTTTGGATAATTACCTTCCATGCAATTGAC
61 GAATAATGTAAAGAAGATGCGTTTGTAGTCCAATGG--T---T-ATTGCCTTCCAAGCAATAGTC
*** * * * * *
896691 TGGGGTTCGACTCTCG--TAA-ATGTAGTTACGATAATAAAA-AA
120 CCAGGTTCGACTCCCGACAAACACG-A-TCACAATAATAAAATAA
* * * * * *** * *
896732 TTTAGTGGAAATTTTTGAAAAGTAAAATGAGTAGTGTATTCGTGGTGTTCTTGATTATGTAAAAT
1 TTAAGGGGAAAATTTTAAAAAGTAAAACGAGTA-AACATT--T--TGTGCTTGATTATGTGAAAT
* * * * * *
896797 AAATAGTGTGAATAAGAGGTGTTTGTAGTCCAATGGTTAAGATAATTGCCTTCCAAGCAATAGTC
61 GAATAATGTAAAGAAGATGCGTTTGTAGTCCAATGG-T----T-ATTGCCTTCCAAGCAATAGTC
*
896862 CCAGGTTCGACTCCCGACAAACGCGATCACAATAATAAAATAA
120 CCAGGTTCGACTCCCGACAAACACGATCACAATAATAAAATAA
896905 TTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAAACATTTTGTGCTTGATTATGTGAAATGAATA
1 TTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAAACATTTTGTGCTTGATTATGTGAAATGAATA
*
896970 ATGTAAAGAAGATGCGTTTGTAGTCCAATGGTTATTGCTTTCCAAGCAATAGTCCCAGGTTCGAC
66 ATGTAAAGAAGATGCGTTTGTAGTCCAATGGTTATTGCCTTCCAAGCAATAGTCCCAGGTTCGAC
*
897035 TCCCGGCAAACACGATCACAATAATAAAATAA
131 TCCCGACAAACACGATCACAATAATAAAATAA
897067 TTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAAACATTTTGTGCTTGATTATGTGAAATGAATA
1 TTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAAACATTTTGTGCTTGATTATGTGAAATGAATA
897132 ATGTAAAGAAGATGCGTTTGTAGTCCAATGGTTA
66 ATGTAAAGAAGATGCGTTTGTAGTCCAATGGTTA
897166 GGATAATTAC
Statistics
Matches: 778, Mismatches: 132, Indels: 93
0.78 0.13 0.09
Matches are distributed among these distances:
162 160 0.21
163 1 0.00
167 1 0.00
168 54 0.07
169 10 0.01
170 7 0.01
171 125 0.16
172 157 0.20
173 240 0.31
174 18 0.02
175 1 0.00
176 1 0.00
178 3 0.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (162 bp):
TTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAAACATTTTGTGCTTGATTATGTGAAATGAATA
ATGTAAAGAAGATGCGTTTGTAGTCCAATGGTTATTGCCTTCCAAGCAATAGTCCCAGGTTCGAC
TCCCGACAAACACGATCACAATAATAAAATAA
Found at i:898351 original size:172 final size:170
Alignment explanation
Indices: 897826--898360 Score: 421
Period size: 172 Copynumber: 3.1 Consensus size: 170
897816 TAGTCCTATT
*** * * * * *
897826 GTTAGGATAATTGCCTTACAAGCAATCA-ACCCGGGTTTGA-GTCCTGGTAAACGAAATTACGAT
1 GTTAGGATAATTGCCTTACAAGCAAT-AGACCATAGTTTGACTTGCT-GCAAAAGCAATTACGAT
* * *
897889 TGTAAAAAATTAAGGGGAAAATTTTGAAAAATAAAACCAATAGTATATATATACCTTTTGTTCTT
64 TGT-AAAAATTAAGGGGAAAATTTTG-AAAACAAAACGAA-A-TACATATATACCTTTTGTTCTT
* * * *
897954 GATAATATG-AACTAAATAGTGTAAAGA-GGAGTTTTTAGTCCAATG
125 GATTATGTGAAAC-AAATAGTGAAAAGAGGGAGTTTTTAGTCCAACG
* * * * * *
897999 GTTAGGATGATTGCCTTACAAGCAATAGACTATAGTTTGATTTGCTGCAAATGCAATTACAATAG
1 GTTAGGATAATTGCCTTACAAGCAATAGACCATAGTTTGACTTGCTGCAAAAGCAATTACGATTG
* * * * ** * *
898064 TAAAATATTAAGGGG-AAATTTTGGAAACTTAAAATG-ATTAGCGTATATATATTTTGTTCGTAA
66 TAAAA-ATTAAGGGGAAAATTTTGAAAAC--AAAACGAAATA-CATATATACCTTTTGTTCTTGA
* * * *
898127 TTATGTGAAACAAATACTGTAAATA-AGAGGTGTTTGTAGTCCAACT
127 TTATGTGAAACAAATAGTG-AAA-AGAG-GGAGTTTTTAGTCCAACG
* * *
898173 GTTAGGATAAATT-CCTTCCAAGCAATAGGCCCA-GGTTTGACTT-CTG-AAAAGCAGAATTACG
1 GTTAGGAT-AATTGCCTTACAAGCAATA-GACCATAGTTTGACTTGCTGCAAAAGC--AATTACG
898234 ATTGTAAAAAGTTAAGGGGAAAATTTTGAAAAGCAAAA-GAAATA-ATATATACCTTTTGTTCTT
62 ATTGTAAAAA-TTAAGGGGAAAATTTTGAAAA-CAAAACGAAATACATATATACCTTTTGTTCTT
* **
898297 GATTATGTGAAACAAATAGTGCAAAAGATGGGCGTTTTTAGTTTAACG
125 GATTATGTGAAACAAATAGTG-AAAAGA-GGGAGTTTTTAGTCCAACG
*
898345 GTTAGGATGATTGCCT
1 GTTAGGATAATTGCCT
898361 GACTCATTGC
Statistics
Matches: 285, Mismatches: 55, Indels: 45
0.74 0.14 0.12
Matches are distributed among these distances:
170 2 0.01
171 35 0.12
172 87 0.31
173 68 0.24
174 75 0.26
175 17 0.06
176 1 0.00
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.32
Consensus pattern (170 bp):
GTTAGGATAATTGCCTTACAAGCAATAGACCATAGTTTGACTTGCTGCAAAAGCAATTACGATTG
TAAAAATTAAGGGGAAAATTTTGAAAACAAAACGAAATACATATATACCTTTTGTTCTTGATTAT
GTGAAACAAATAGTGAAAAGAGGGAGTTTTTAGTCCAACG
Found at i:899089 original size:172 final size:171
Alignment explanation
Indices: 898697--902378 Score: 2556
Period size: 172 Copynumber: 21.6 Consensus size: 171
898687 AGAAAGAACG
898697 TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGATA-AGGCGTTTGTAGTCCAACGGTTAGG
1 TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA-AGAGGCGTTTGTAGTCCAACGGTTAGG
* * * ***
898761 ATACTTG-CTTTCAAGCAATAGACCCAGGTTTGACTCTCC-GCAAACATAATTACGATAGTAAAA
65 ATAATTGCCTTCCAAGCAATAGA-CCGGGTTTGACTC-CCGGCAAATGCAATTACGATAGTAAAA
* * * *
898824 AA-TTA-TGGAAAATTTTTGAAAAGTAAATCGAAAAGTGTATACC
128 AATTTAGGGGAAAA-TTTTGAAAAGTAAAACGAATAGTGTATACA
* ** * ** * * *
898867 T-TTTTTGCTCAATTATATGAAAGGAATAGTGTAAAGAAGAGGCATTTATAGTCCAACGGTTAGA
1 TGTTGTT-CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGG
** *
898931 ATAATTGCCTTCCAAGCAATAGACTCGGGTTTGACTCCCAACAAATGCAATTATGATAGTAAAAA
65 ATAATTGCCTTCCAAGCAATAGAC-CGGGTTTGACTCCCGGCAAATGCAATTACGATAGTAAAAA
*
898996 ATTTAGGGGAAAATTTTGAAAAGAAAAACGAATAGTGTATACA
129 ATTTAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACA
* * * * * * *
899039 TGTTGTTCTTGATTATGTTAAACGAATAGTGTAAAGAATAGGTGTTTATAGTCCAACGATTATGA
1 TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGA
* * * * *** *
899104 TAATTTCCTTCTAAGCAATAGACCCCGGTTCGACTCCCGGCAAACATAATTACTATAGTAAAAAA
66 TAATTGCCTTCCAAGCAATAGA-CCGGGTTTGACTCCCGGCAAATGCAATTACGATAGTAAAAAA
* * *
899169 ATTAAGGGAAAATTTTTGAAAAGTAAAAC-AAGTAGTGTATACG
130 TTTAGGGGAAAA-TTTTGAAAAGTAAAACGAA-TAGTGTATACA
* * * * * * *
899212 TGTTGTTCTTGATTGTGTGAAACAATTAGTTTAAAGAAGATGCGTTAGTAGT-CAACAGTTTGGA
1 TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGA
* * * * * * *
899276 TAATTGCATTCCAAGCAA-AGGACCTGAGTTCGACTCTCGGTAAATGTAATTACGATA-TTAAAA
66 TAATTGCCTTCCAAGCAATA-GACC-GGGTTTGACTCCCGGCAAATGCAATTACGATAGTAAAAA
* ** *
899339 ATTAAGGGGAATTTTTTTGAAAAGTAAAACGAATAGTGTAAACA
129 ATTTAGGGGAA-AATTTTGAAAAGTAAAACGAATAGTGTATACA
* * * ** *
899383 TTTTGTTCTTGATTATGTGAAACGAATAATGTAAAGAAGAAACGTTTGTAGTCCAATGGTTAGGA
1 TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGA
* * * * *
899448 TAATTACCTTCCAAGCAATAGACCCGAGTTTGACTCCTGGCTAATGTAATTACGATAGTAAAAAA
66 TAATTGCCTTCCAAGCAATAGA-CCGGGTTTGACTCCCGGCAAATGCAATTACGATAGTAAAAAA
* * * * **
899513 TTAAGGGGAAATTTTTGAAAAGTAAAACGAGTTGTGTATTTA
130 TTTAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACA
* * * *
899555 TGTTGTTCGTT-ATTATGTGAAACAAATAGTGTAAAAAATAGGCGTTTGTAGTCTAACGATTAGG
1 TGTTGTTC-TTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGG
* * * * * *** * *
899619 ATAATTTCTTTCCAAGCAATACGCCCGGCTTCT-ACTCCTGGCAAAAAAAATTAGGATAGTAAAG
65 ATAATTGCCTTCCAAGCAATA-GACCGGGTT-TGACTCCCGGCAAATGCAATTACGATAGTAAAA
* * * * *
899683 AA-TTAAGGGAAAATTTTGAAAAGTAAAATGAGTAATGTGT--A
128 AATTTAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACA
* * * * *
899724 --TTGATCTTGATTATTTGAAACAAATAGTTTTTAAGAAGAGGCATTTGTAGTCCAACGGTTTA-
1 TGTTGTTCTTGATTATGTGAAACAAATAG-TGTAAAGAAGAGGCGTTTGTAGTCCAACGG-TTAG
* * * * * ** * * *
899786 GATAATTGCCTTTCATGCAATGGATCGGGGTTTGACTCTCGATAAAGGTAATTACGATATTAAAA
64 GATAATTGCCTTCCAAGCAATAGA-CCGGGTTTGACTCCCGGCAAATGCAATTACGATAGTAAAA
* ** *
899851 AA-TTAAGTAAAAATTTTTGAAAAGTAAAACGAATAGTGTATACC
128 AATTTAGGGGAAAA-TTTTGAAAAGTAAAACGAATAGTGTATACA
* * * * *
899895 T-TTCGTGCTTAATTATGTG-----AA-A---T---GAA-A-GTGTTTGTATTCTAACGGTTAGG
1 TGTT-GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGG
** * ** *
899945 ATAATTGCCTTCCAAGCAATAGACCTGACTTTGACTCCCGACAAATGCGTTTACGATTGTAAAAA
65 ATAATTGCCTTCCAAGCAATAGACC-GGGTTTGACTCCCGGCAAATGCAATTACGATAGTAAAAA
* * *
900010 ATTAAGGGGAAAATTTTGGAAAGTAAAAC-AAGTCA-TGTATAGA
129 ATTTAGGGGAAAATTTTGAAAAGTAAAACGAA-T-AGTGTATACA
* * * ** *
900053 TGTTGTTCTTGATTATGTAAAACAAATAGTTTAAAGAAGAGGTGTTTGTAGTCCAACCATTAAGA
1 TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGA
* ** **** * * *
900118 TAATTGCCTTCAAAGCAATAGACACGGGTTCAACTTGTAGAAAATGTAATTTCGATAGT--AAAA
66 TAATTGCCTTCCAAGCAATAGAC-CGGGTTTGACTCCCGGCAAATGCAATTACGATAGTAAAAAA
* * * * *
900181 TTAAGTGGAAAATTTTGATGAAAAGTAAAACAAATAGT-TTTAACC
130 TTTAGGGGAAAA-TTT--TGAAAAGTAAAACGAATAGTGTAT-ACA
* * * * * * * * * **
900226 TTTTGTACTTGAGTATGTGAAACTAATACTGTAAAGAAAAGGTGTTTTTAGTCCTATTGTTAGGA
1 TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGA
** * * * * *
900291 TAATTGCCTTCCAATTAATAGACTCGGGTTTGAGTCCCCGCAAAAGAAATTACGATTGTAAAAAA
66 TAATTGCCTTCCAAGCAATAGAC-CGGGTTTGACTCCCGGCAAATGCAATTACGATAGTAAAAAA
* * *
900356 TTAAGGGG-AAA-TTT------TAAAA--AATA-TATATACC
130 TTTAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACA
* * * *
900387 T-TTTTTGCTTGATTATATGAAACAAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAATGGTTAGG
1 TGTTGTT-CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGG
* * * * ** **** * *
900451 ATGATTTCCTTCCAACCGATAGACTCGGGTTCAACTTGATGCAAATACAATTACAATAGTAAAAA
65 ATAATTGCCTTCCAAGCAATAGAC-CGGGTTTGACTCCCGGCAAATGCAATTACGATAGTAAAAA
** * * * * * * *
900516 A-TTAACGAAAAAATTGGAAAAGTAAAACGATTAGCGAATACT
129 ATTTAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACA
* * * * *
900558 TTTTGTGCTTGATTATGTGAAACAAATACTGTAAAGAAGATGCGTTTGTAGTCCAACTGTTAGGA
1 TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGA
* * ** * * * *
900623 TAAATT-CCTTCCAAGCAATAGGCCTGGGTTTAAC-CTTTGGTAAACGCAATTACGATTGT--TA
66 T-AATTGCCTTCCAAGCAATAGACC-GGGTTTGACTC-CCGGCAAATGCAATTACGATAGTAAAA
* * *
900684 AATGTTATGGGGAAATTTTTGAAAAGTAAAACAAATAGTATATA-A
128 AAT-TTA-GGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACA
* * *
900729 T-TTTTATGCTTGATTATGTGAAACGAATTA-TGTAAAGAAGAGGCGTTTGTAGTCTAACGGTTA
1 TGTTGT-T-CTTGATTATGTGAAAC-AAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTA
* * * * * **
900792 GGATAATTGCCTTCCAAGCCATAGACCCGGCTTTAACTCTCGGCAAACGCGTTTACGATAGT-AA
63 GGATAATTGCCTTCCAAGCAATAGA-CCGGGTTTGACTCCCGGCAAATGCAATTACGATAGTAAA
** *
900856 AAATTTAAGTTGAAAATTTTG-AAAGTAAAACGAGTAGTGTATACA
127 AAATTT-AGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACA
* * *
900901 TCTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGATGAGGCGTTTGTAGTCCAATGGTTAGGA
1 TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGA
* * * * ** * * **
900966 TAATTGCCTTCTAAACAATAGACCTGGGTTCGACTCCTGATAAAAGAAATTTTGATAGT-AAAAA
66 TAATTGCCTTCCAAGCAATAGACC-GGGTTTGACTCCCGGCAAATGCAATTACGATAGTAAAAAA
* * * * * *
901030 -TTAAGGAAAAACTTTT-AAAAATAAACCAAATAGTGTATACC
130 TTTAGGGGAAAA-TTTTGAAAAGTAAAACGAATAGTGTATACA
* * * * * * * * * *
901071 TTTTGTTCTTGATTATGAGAAGCGAATAGTGTAAAGAGGAGGCGTTTGTTGTCTAACCGATACGA
1 TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGA
* ** *** **
901136 TAATTGCCTTCCAAGCAATAGACCTAGGTTCAACTCGTTGCAAATGCAATTATAATAGTAAAATA
66 TAATTGCCTTCCAAGCAATAGACC-GGGTTTGACTCCCGGCAAATGCAATTACGATAGTAAAA-A
* * * *
901201 ATTAAGGGGTAAATTTTAAAAAGTAAAACGAATAGTGTAAACA
129 ATTTAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACA
* * * * * * *
901244 T-TT-TTGCTTGAGTATGTGAAATC-AATACTGTAAACAAGACGCGTTCGTAATCCTACGGTTAG
1 TGTTGTT-CTTGATTATGTGAAA-CAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAG
* * * ** * * *
901306 GATAACTGCCTTCCAAGGAATAGACTTGGGTTTGACTATCGACAAATGCAATTGCAATA-TGAAA
64 GATAATTGCCTTCCAAGCAATAGAC-CGGGTTTGACTCCCGGCAAATGCAATTACGATAGT-AAA
* * * * * *
901370 AAGTTAAGGGGAAATTTTTGAAAAGTAAAACGTATAGTGTTTACC
127 AAATTTAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACA
* * * ** * *
901415 T-TTCGTGCTTGATTATATGAAACGAATAGTGTAAAGAAGAGGTATTTGTAGTCTAATGGTTAGG
1 TGTT-GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGG
** * * * * * * *
901479 CCAATTACCTTACAAGCAACAGTCCTGGGTTTGACTCCCGGTAAATG-ATTTACGATTGTAAAAA
65 ATAATTGCCTTCCAAGCAATAGACC-GGGTTTGACTCCCGGCAAATGCAATTACGATAGTAAAAA
* * * **
901543 A-TTAAGGGAAAATTATGAAAAGTAAAAC-AAGTAATGTATATG
129 ATTTAGGGGAAAATTTTGAAAAGTAAAACGAA-TAGTGTATACA
** * * * * * *
901585 TGTTGTTCTTGATTACATGAAACAAATAGTATGAATAACATGCGTTTGTAGTCCAACAGTTAGGA
1 TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGA
** ** * *
901650 TAATTGCCTTGTAAGCAATAGACCTGGGTTCAACT-CC--C--A-GCAATCACGATCGTAAAAAA
66 TAATTGCCTTCCAAGCAATAGACC-GGGTTTGACTCCCGGCAAATGCAATTACGATAGTAAAAAA
* * * * * * **
901709 -TTAAGGGAAAATATTAAAAAATAAAATGAGTAGTGTATATG
130 TTTAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACA
* * * * * *
901750 TGTTGTTCTTTATTATGTGAAACAAATAGTGTAAAGATGAGGCATTTGTAGTCCAATGG-TGGGG
1 TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGA
* * * * * * * *
901814 TAATTTCCTTCCAATCAAAAGTCTCGGGTTCGATTCCCGACAAACGCAATTACGATAGTAAAAAA
66 TAATTGCCTTCCAAGCAATAGAC-CGGGTTTGACTCCCGGCAAATGCAATTACGATAGTAAAAAA
* * *
901879 ATTAGGGGGAAAAATATTGAAAAGTAAAACGAGTAGTGTATACA
130 TTTA-GGGG-AAAATTTTGAAAAGTAAAACGAATAGTGTATACA
* **
901923 TGTTGTTCTTGATTATGTGAAACAAATAGAT-TAAATAAGAGGCGTTTGTAGTCCAACAATTAGG
1 TGTTGTTCTTGATTATGTGAAACAAATAG-TGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGG
* * * ** * * ** *
901987 ATTAGTTTCCTTCCAAGCCATAGACCCAAGTTCGACTCCTC-GTAAAAACAATTACTATAGT-AA
65 A-TAATTGCCTTCCAAGCAATAGA-CCGGGTTTGACTCC-CGGCAAATGCAATTACGATAGTAAA
* * * *
902050 AAATATAACGGG-AAATGTTT-AAAAGTAAAATGAGTAGGTGTA-A-A
127 AAAT-TTAGGGGAAAAT-TTTGAAAAGTAAAACGAATA-GTGTATACA
** * * * * * *
902094 TGGGTCATTCTCGATAATGTGAAACAAATAGTTTAAAGAAGAGGCATTTGTAGTCCTCCATTC-A
1 T--GTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAG---TCCA-ACGG
* * * * * **
902158 TTAGGATAATTGCCATTCCAAACAGTAGACCTAGGTTTGACTCGCGGAAAATGCAATTTTGATAG
60 TTAGGATAATTGCC-TTCCAAGCAATAGACC-GGGTTTGACTCCCGGCAAATGCAATTACGATAG
* * **
902223 TAAAAAA-TTAGGTGGTAAATTTTGAAAAGTAAAACGAGTAGTGTATATG
123 TAAAAAATTTAGG-GGAAAATTTTGAAAAGTAAAACGAATAGTGTATACA
* * *
902272 TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGATGAGGCATTTGTAGTCCAACGATTAGGA
1 TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGG-
* * *
902337 TAATAATTGCCTTCCAATCAAAAGACCCGGGTTCGACTCCCG
65 --ATAATTGCCTTCCAAGCAATAGA-CCGGGTTTGACTCCCG
902379 AAACACAATT
Statistics
Matches: 2743, Mismatches: 618, Indels: 297
0.75 0.17 0.08
Matches are distributed among these distances:
157 6 0.00
158 100 0.04
159 11 0.00
160 9 0.00
161 106 0.04
162 8 0.00
163 3 0.00
164 35 0.01
165 98 0.04
166 3 0.00
167 27 0.01
168 84 0.03
169 44 0.02
170 338 0.12
171 445 0.16
172 776 0.28
173 405 0.15
174 17 0.01
175 89 0.03
176 112 0.04
177 26 0.01
178 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (171 bp):
TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGA
TAATTGCCTTCCAAGCAATAGACCGGGTTTGACTCCCGGCAAATGCAATTACGATAGTAAAAAAT
TTAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACA
Found at i:899341 original size:343 final size:341
Alignment explanation
Indices: 898699--902376 Score: 2567
Period size: 343 Copynumber: 10.8 Consensus size: 341
898689 AAAGAACGTG
898699 TTGTTCTTGATTATGTGAAACAAATAGTGTAAAGATA-AGGCGTTTGTAGTCCAACGGTTAGGAT
1 TTGTTCTTGATTATGTGAAACAAATAGTGTAAAGA-AGAGGCGTTTGTAGTCCAACGGTTAGGAT
* * * * *
898763 ACTTG-CTTTCAAGCAATAGACCCAGGTTTGACTCTCC-GCAAACATAATTACGATAGTAAAAAA
65 AATTGCCTTCCAAGCAATAGACCCGGGTTCGACTC-CCGGCAAACGTAATTACGATAGTAAAAAA
* * * * * ** *
898826 TT-ATGGAAAATTTTTGAAAAGTAAATCGAA-AAGTGTATACCT-TTTTTGCTCAATTATATGAA
129 TTAAGGGAAAATTTTTGAAAAGTAAAAC-AAGTAGTGTATACATGTTGTT-CTTGATTATGTGAA
** * * *
898888 AGGAATAGTGTAAAGAAGAGGCATTTATAGTCCAACGGTTAGAATAATTGCCTTCCAAGCAATAG
192 ACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAG
* * *
898953 A-CTCGGGTTTGACTCCCAACAAATGCAATTATGATAGTAAAAAATTTAGGGGAAAATTTTGAAA
257 ACCT-GGGTTTGACT-CCGACAAATGCAATTACGATA-TTAAAAATTTAGGGGAAAATTTTGAAA
*
899017 AGAAAAACGAATAGTGTATACAT
319 AGTAAAACGAATAGTGTATACAT
* * * * * * *
899040 GTTGTTCTTGATTATGTTAAACGAATAGTGTAAAGAATAGGTGTTTATAGTCCAACGATTATGAT
1 -TTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT
* * * * *
899105 AATTTCCTTCTAAGCAATAGACCCCGGTTCGACTCCCGGCAAACATAATTACTATAGTAAAAAAA
65 AATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGTAATTACGATAGT-AAAAAA
* *
899170 TTAAGGGAAAATTTTTGAAAAGTAAAACAAGTAGTGTATACGTGTTGTTCTTGATTGTGTGAAAC
129 TTAAGGGAAAATTTTTGAAAAGTAAAACAAGTAGTGTATACATGTTGTTCTTGATTATGTGAAAC
* * * * * * *
899235 AATTAGTTTAAAGAAGATGCGTTAGTAGT-CAACAGTTTGGATAATTGCATTCCAAGCAA-AGGA
194 AAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATA-GA
* * ** * * **
899298 CCTGAGTTCGACTCTCGGTAAATGTAATTACGATATTAAAAATTAAGGGGAATTTTTTTGAAAAG
258 CCTGGGTTTGACTC-CGACAAATGCAATTACGATATTAAAAATTTAGGGGAA-AATTTTGAAAAG
*
899363 TAAAACGAATAGTGTAAACATT
321 TAAAACGAATAGTGTATACA-T
* * ** *
899385 TTGTTCTTGATTATGTGAAACGAATAATGTAAAGAAGAAACGTTTGTAGTCCAATGGTTAGGATA
1 TTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATA
* * * * * *
899450 ATTACCTTCCAAGCAATAGACCCGAGTTTGACTCCTGGCTAATGTAATTACGATAGTAAAAAATT
66 ATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGTAATTACGATAGTAAAAAATT
* * * **
899515 AAGGGGAAATTTTTGAAAAGTAAAACGAGTTGTGTATTTATGTTGTTCGTT-ATTATGTGAAACA
131 AAGGGAAAATTTTTGAAAAGTAAAACAAGTAGTGTATACATGTTGTTC-TTGATTATGTGAAACA
* * * * * *
899579 AATAGTGTAAAAAATAGGCGTTTGTAGTCTAACGATTAGGATAATTTCTTTCCAAGCAATACG-C
195 AATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATA-GAC
* * * *** * * *
899643 CCGGCTTCT-ACTCCTGGCAAAAAAAATTAGGATAGTAAAGAA-TTAAGGGAAAATTTTGAAAAG
259 CTGGGTT-TGACTCC-GACAAATGCAATTACGATATTAAA-AATTTAGGGGAAAATTTTGAAAAG
* * * *
899706 TAAAATGAGTAATGTGT--A-
321 TAAAACGAATAGTGTATACAT
* * * * *
899724 TTGATCTTGATTATTTGAAACAAATAGTTTTTAAGAAGAGGCATTTGTAGTCCAACGGTTTA-GA
1 TTGTTCTTGATTATGTGAAACAAATAG-TGTAAAGAAGAGGCGTTTGTAGTCCAACGG-TTAGGA
* * * * * * * ** * *
899788 TAATTGCCTTTCATGCAATGGATCGGGGTTTGACTCTCGATAAAGGTAATTACGATATTAAAAAA
64 TAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGTAATTACGATAGTAAAAAA
** * * *
899853 TTAAGTAAAAATTTTTGAAAAGTAAAACGAA-TAGTGTATACCT-TTCGTGCTTAATTATGTG--
129 TTAAGGGAAAATTTTTGAAAAGTAAAAC-AAGTAGTGTATACATGTT-GTTCTTGATTATGTGAA
* * *
899914 ---AA-A---T---GAA-A-GTGTTTGTATTCTAACGGTTAGGATAATTGCCTTCCAAGCAATAG
192 ACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAG
** ** * *
899967 ACCTGACTTTGACTCCCGACAAATGCGTTTACGAT-TGTAAAAAATTAAGGGGAAAATTTTGGAA
257 ACCTGGGTTTGACT-CCGACAAATGCAATTACGATAT-T-AAAAATTTAGGGGAAAATTTTGAAA
*
900031 AGTAAAAC-AAGTCA-TGTATAGAT
319 AGTAAAACGAA-T-AGTGTATACAT
* * * ** *
900054 GTTGTTCTTGATTATGTAAAACAAATAGTTTAAAGAAGAGGTGTTTGTAGTCCAACCATTAAGAT
1 -TTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT
* * * **** * * *
900119 AATTGCCTTCAAAGCAATAGACACGGGTTCAACTTGTAGAAAATGTAATTTCGATAGT--AAAAT
65 AATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGTAATTACGATAGTAAAAAAT
* * * * * *
900182 TAAGTGGAAAATTTTGATGAAAAGTAAAACAAATAGT-TTTAACCTTTTGTACTTGAGTATGTGA
130 TAAG-GGAAAATTTT--TGAAAAGTAAAACAAGTAGTGTAT-ACATGTTGTTCTTGATTATGTGA
* * * * * * ** **
900246 AACTAATACTGTAAAGAAAAGGTGTTTTTAGTCCTATTGTTAGGATAATTGCCTTCCAATTAATA
191 AACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATA
* * * *
900311 GA-CTCGGGTTTGAGTCCCCG-CAAAAGAAATTACGAT-TGTAAAAAATTAAGGGG-AAA-TTT-
256 GACCT-GGGTTTGA--CTCCGACAAATGCAATTACGATAT-T-AAAAATTTAGGGGAAAATTTTG
* *
900370 -----TAAAA--AATA-TATATACCT
316 AAAAGTAAAACGAATAGTGTATACAT
* * * *
900388 TTTTTGCTTGATTATATGAAACAAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAATGGTTAGGAT
1 TTGTT-CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT
* * * * * * **** *** *
900453 GATTTCCTTCCAACCGATAGACTCGGGTTCAACTTGATGCAAATACAATTACAATAGTAAAAAAT
65 AATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGTAATTACGATAGTAAAAAAT
* ** * * * * * * * *
900518 TAA-CGAAAAAATTGGAAAAGTAAAACGATTAGCGAATACTTTTTGTGCTTGATTATGTGAAACA
130 TAAGGGAAAATTTTTGAAAAGTAAAACAAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACA
* * * *
900582 AATACTGTAAAGAAGATGCGTTTGTAGTCCAACTGTTAGGATAAATT-CCTTCCAAGCAATAGGC
195 AATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT-AATTGCCTTCCAAGCAATAGAC
* ** ** * * *
900646 CTGGGTTTAACCTTTGGTAAACGCAATTACGAT-TGT-TAAATGTTATGGGGAAATTTTTGAAAA
259 CTGGGTTTGA-CTCCGACAAATGCAATTACGATAT-TAAAAAT-TTA-GGGGAAAATTTTGAAAA
* *
900709 GTAAAACAAATAGTATATA-AT
320 GTAAAACGAATAGTGTATACAT
* * *
900730 TTTTATGCTTGATTATGTGAAACGAATTA-TGTAAAGAAGAGGCGTTTGTAGTCTAACGGTTAGG
1 TTGT-T-CTTGATTATGTGAAAC-AAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGG
* * ** * ***
900794 ATAATTGCCTTCCAAGCCATAGACCCGGCTTTAACTCTCGGCAAACGCGTTTACGATAGTAAAAA
63 ATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGTAATTACGATAGTAAAAA
* * * *
900859 TTTAAGTTGAAAA-TTTTG-AAAGTAAAACGAGTAGTGTATACATCTTGTTCTTGATTATGTGAA
128 ATTAAG-GGAAAATTTTTGAAAAGTAAAACAAGTAGTGTATACATGTTGTTCTTGATTATGTGAA
* * * *
900922 ACAAATAGTGTAAAGATGAGGCGTTTGTAGTCCAATGGTTAGGATAATTGCCTTCTAAACAATAG
192 ACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAG
* * * * ** * * *
900987 ACCTGGGTTCGACTCCTGATAAAAGAAATTTTGATAGTAAAAA-TTAAGGAAAAACTTTT-AAAA
257 ACCTGGGTTTGACTCC-GACAAATGCAATTACGATATTAAAAATTTAGGGGAAAA-TTTTGAAAA
* * * *
901050 ATAAACCAAATAGTGTATACCTT
320 GTAAAACGAATAGTGTATA-CAT
* * * * * * * * *
901073 TTGTTCTTGATTATGAGAAGCGAATAGTGTAAAGAGGAGGCGTTTGTTGTCTAACCGATACGATA
1 TTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATA
** * *** * * **
901138 ATTGCCTTCCAAGCAATAGACCTAGGTTCAACTCGTTGCAAATGCAATTATAATAGTAAAATAAT
66 ATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGTAATTACGATAGTAAAA-AAT
* * * *
901203 TAAGGGGTAAA-TTTTAAAAAGTAAAACGAA-TAGTGTAAACAT-TT-TTGCTTGAGTATGTGAA
130 TAA-GGGAAAATTTTTGAAAAGTAAAAC-AAGTAGTGTATACATGTTGTT-CTTGATTATGTGAA
* * * * * * * *
901264 ATC-AATACTGTAAACAAGACGCGTTCGTAATCCTACGGTTAGGATAACTGCCTTCCAAGGAATA
192 A-CAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATA
* * * * * * *
901328 GACTTGGGTTTGACTATCGACAAATGCAATTGCAATATGAAAAAGTTAAGGGGAAATTTTTGAAA
256 GACCTGGGTTTGACT-CCGACAAATGCAATTACGATATTAAAAA-TTTAGGGGAAAATTTTGAAA
* * *
901393 AGTAAAACGTATAGTGTTTACCT
319 AGTAAAACGAATAGTGTATACAT
* * * ** * * **
901416 TTCGTGCTTGATTATATGAAACGAATAGTGTAAAGAAGAGGTATTTGTAGTCTAATGGTTAGGCC
1 TT-GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT
* * * * * * * * * *
901481 AATTACCTTACAAGCAACAGTCCTGGGTTTGACTCCCGGTAAATG-ATTTACGATTGTAAAAAAT
65 AATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGTAATTACGATAGTAAAAAAT
* * ** **
901545 TAAGGGAAAA-TTATGAAAAGTAAAACAAGTAATGTATATGTGTTGTTCTTGATTACATGAAACA
130 TAAGGGAAAATTTTTGAAAAGTAAAACAAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACA
* * * * * * **
901609 AATAGTATGAATAACATGCGTTTGTAGTCCAACAGTTAGGATAATTGCCTTGTAAGCAATAGACC
195 AATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACC
** * ** * * * * *
901674 TGGGTTCAACTCC--C--A-GCAATCACGATCGTAAAAAATTAAGGGAAAATATTAAAAAATAAA
260 TGGGTTTGACTCCGACAAATGCAATTACGATATTAAAAATTTAGGGGAAAATTTTGAAAAGTAAA
* * **
901734 ATGAGTAGTGTATATGT
325 ACGAATAGTGTATACAT
* * * * * *
901751 GTTGTTCTTTATTATGTGAAACAAATAGTGTAAAGATGAGGCATTTGTAGTCCAATGG-TGGGGT
1 -TTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT
* * * * * * * *
901815 AATTTCCTTCCAATCAAAAGTCTCGGGTTCGATTCCCGACAAACGCAATTACGATAGTAAAAAAA
65 AATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGTAATTACGATAGT-AAAAAA
* * * *
901880 TTAGGGGGAAAAATATTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAA
129 TTA-AGGGAAAATTTTTGAAAAGTAAAACAAGTAGTGTATACATGTTGTTCTTGATTATGTGAAA
* ** * * *
901945 CAAATAGAT-TAAATAAGAGGCGTTTGTAGTCCAACAATTAGGATTAGTTTCCTTCCAAGCCATA
193 CAAATAG-TGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGA-TAATTGCCTTCCAAGCAATA
*** * * * * * *
902009 GACCCAAGTTCGACTCCTCGTA-AAA-ACAATTACTATAGTAAAAATATAACGGG-AAATGTTT-
256 GACCTGGGTTTGACT-C-CG-ACAAATGCAATTACGATATTAAAAAT-TTAGGGGAAAAT-TTTG
* *
902070 AAAAGTAAAATGAGTAGGTGTA-A-AT
316 AAAAGTAAAACGAATA-GTGTATACAT
** * * * * * *
902095 GGGTCATTCTCGATAATGTGAAACAAATAGTTTAAAGAAGAGGCATTTGTAGTCCTCCATTC-AT
1 ---TTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAG---TCCA-ACGGT
* * ** * * * * * **
902159 TAGGATAATTGCCATTCCAAACAGTAGACCTAGGTTTGACTCGCGGAAAATGCAATTTTGATAGT
59 TAGGATAATTGCC-TTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGTAATTACGATAGT
* * * **
902224 AAAAAATTAGGTGGTAAA-TTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCTTGATTAT
123 AAAAAATTAAG-GGAAAATTTTTGAAAAGTAAAACAAGTAGTGTATACATGTTGTTCTTGATTAT
* * *
902288 GTGAAACAAATAGTGTAAAGATGAGGCATTTGTAGTCCAACGATTAGGATAATAATTGCCTTCCA
187 GTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGG---ATAATTGCCTTCCA
* * * *
902353 ATCAAAAGACCCGGGTTCGACTCC
249 AGCAATAGACCTGGGTTTGACTCC
902377 CGAAACACAA
Statistics
Matches: 2640, Mismatches: 560, Indels: 265
0.76 0.16 0.08
Matches are distributed among these distances:
325 2 0.00
326 63 0.02
327 34 0.01
328 12 0.00
329 12 0.00
330 76 0.03
331 62 0.02
332 117 0.04
333 13 0.00
334 152 0.06
335 91 0.03
336 36 0.01
337 14 0.01
338 81 0.03
339 55 0.02
340 133 0.05
341 159 0.06
342 272 0.10
343 447 0.17
344 376 0.14
345 187 0.07
346 62 0.02
347 1 0.00
348 1 0.00
349 92 0.03
350 25 0.01
351 64 0.02
352 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (341 bp):
TTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATA
ATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAAACGTAATTACGATAGTAAAAAATT
AAGGGAAAATTTTTGAAAAGTAAAACAAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACAA
ATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCT
GGGTTTGACTCCGACAAATGCAATTACGATATTAAAAATTTAGGGGAAAATTTTGAAAAGTAAAA
CGAATAGTGTATACAT
Found at i:900515 original size:161 final size:161
Alignment explanation
Indices: 900223--900520 Score: 355
Period size: 161 Copynumber: 1.9 Consensus size: 161
900213 AATAGTTTTA
* * * * *
900223 ACCTTTTGTACTTGAGTATGTGAAACTAATACTGTAAAGAAAAGGTGTTTTTAGTCCTATTGTTA
1 ACCTTTTGTACTTGAGTATATGAAACAAATACTGTAAAGAAAAGGTGTTTGTAGTCCAATGGTTA
** ** * * * *
900288 GGATAATTGCCTTCCAATTAATAGACTCGGGTTTGAGTCCCCGCAAAAGAAATTACGATTGTAAA
66 GGATAATTGCCTTCCAACCAATAGACTCGGGTTCAACTCCACGCAAAAGAAATTACAATAGTAAA
900353 AAATTAAGGGGAAATTTTAAAAAATATATAT
131 AAATTAAGGGGAAATTTTAAAAAATATATAT
* * * * *
900384 ACCTTTTTTGCTTGATTATATGAAACAAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAATGGTTA
1 ACCTTTTGTACTTGAGTATATGAAACAAATACTGTAAAGAAAAGGTGTTTGTAGTCCAATGGTTA
* * * ** * *
900449 GGATGATTTCCTTCCAACCGATAGACTCGGGTTCAACTTGATGCAAATA-CAATTACAATAGTAA
66 GGATAATTGCCTTCCAACCAATAGACTCGGGTTCAACTCCACGCAAA-AGAAATTACAATAGTAA
900513 AAAATTAA
130 AAAATTAA
900521 CGAAAAAATT
Statistics
Matches: 111, Mismatches: 25, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
161 110 0.99
162 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (161 bp):
ACCTTTTGTACTTGAGTATATGAAACAAATACTGTAAAGAAAAGGTGTTTGTAGTCCAATGGTTA
GGATAATTGCCTTCCAACCAATAGACTCGGGTTCAACTCCACGCAAAAGAAATTACAATAGTAAA
AAATTAAGGGGAAATTTTAAAAAATATATAT
Found at i:902560 original size:142 final size:141
Alignment explanation
Indices: 902271--902550 Score: 325
Period size: 142 Copynumber: 2.0 Consensus size: 141
902261 TAGTGTATAT
* * * *
902271 GTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGATGAGGCATTTGTAGTCCAACGATTAGG
1 GTGTTGGTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGCCATTTGTAGTCCAACAATTAGG
*
902336 ATAATAATTGCCTTCCAATCAAAAGACCCGGGTTCGACTCCCGAAACACAATTACTAGTAAAATG
66 ATAAT-ATTGCCTTCCAAGCAAAAGACCCGGGTTCGACTCCCGAAACACAATTACTAGTAAAATG
* ** * *
902401 AGTGGTGTATAC
130 AATGAAGGAGAC
* * *
902413 GTGTTGGTCTTGATTAT-TAGAAACAAATAGTTTAAATAAGAGCCGTTTGTAGTCCAACAATTAG
1 GTGTTGGTCTTGATTATGT-GAAACAAATAGTGTAAAGAAGAGCCATTTGTAGTCCAACAATTAG
* **
902477 GATAAT-TT-CCTTCCAAGCAATAGATTCGGGTTCGACTCCCGGTAAACACAATTACTATAGTAA
65 GATAATATTGCCTTCCAAGCAAAAGACCCGGGTTCGACTCCC-G-AAACACAATTAC--TAGTAA
*
902540 AA-GAATTAAGG
126 AATGAATGAAGG
902551 GGAGTTGTTG
Statistics
Matches: 117, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
139 28 0.24
140 3 0.03
141 13 0.11
142 65 0.56
143 8 0.07
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.30
Consensus pattern (141 bp):
GTGTTGGTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGCCATTTGTAGTCCAACAATTAGG
ATAATATTGCCTTCCAAGCAAAAGACCCGGGTTCGACTCCCGAAACACAATTACTAGTAAAATGA
ATGAAGGAGAC
Found at i:903519 original size:172 final size:172
Alignment explanation
Indices: 902405--905037 Score: 1819
Period size: 172 Copynumber: 15.4 Consensus size: 172
902395 AAAATGAGTG
* * ** * * *
902405 GTGTATACGTGTTGGTCTTGATTAT-TAGAAACAAATAGTTTAAATAAGAGCCGTTTGTAGTCCA
1 GTGTATACATGTTGTTCTTGATTATGT-GAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCA
** * ** * * ** *
902469 ACAATTAGGATAATTTCCTTCCAAGCAATAGATTCGGGTTCGACTCCCGGTAAACACAATTACTA
65 ACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCAGCAAATGCAATTACGA
* * * *
902534 TAGTAAAAGAATTAAGGGG--AGTTGTTGAAAAGTAAAATGAGTA
130 TAGTAAAA-AATTAAGGGGAAAATT-TTAAAAAGTAAAACGAATA
* * * * ** * * * *
902577 GTGTATACATGTTATTATCGGTTATGTGAAACCAAATAATTTAAGGAAGAGGCATTTGTAGTCCA
1 GTGTATACATGTTGTTCTTGATTATGTGAAA-TGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCA
** * * ** * * * * ** *
902642 ACCATTAGGATAATTGCCACTCCAAACTGTAGTCCTGGGTTCGACTCTC-GAAAAATATAATTTC
65 ACGGTTAGGATAATTGCC-TTCCAAGCAATAGACCCGGGTTCGACTCCCAG-CAAATGCAATTAC
* * * * *
902706 GATAGTAAAAAATAAAGTGGTAAATTTTGAATAGTAAAACGAATA
128 GATAGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATA
* * * * * * *
902751 GTTTTTAGCAT-TTCTGCTTGATTATGTGAAACT-AATACTGTAAAAAAGAGGCGTTTGTAATCC
1 GTGTATA-CATGTTGTTCTTGATTATGTGAAA-TGAATAGTGTAAAGAAGAGGCGTTTGTAGTCC
* ** * * * * * * * * ** *
902814 TATTGTTAGGATAATTGTCTTGCAAGCAACAAACTCGGGTTTGAGTCCCGGCAAA-AAAATTATG
64 AACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCAGCAAATGCAATTACG
* * * * *
902878 ATTGTAAAAAAATTAAGTGGAATATTTT--GAAGTAAAACAAATA
129 ATAGT-AAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATA
* * * * * *
902921 GTATATATATATATATATCTGCTTGATTA--TGAAACT-AATAGTGT--A-AAGAGGAGTTTTTA
1 G--TGTATACATGT-TGT-T-CTTGATTATGTGAAA-TGAATAGTGTAAAGAAGAGGCGTTTGTA
* * * * * ** * *
902980 GTCCAACGGTTTGGATGATTGCCTTCCAAGCAATAGGCTCTGGTTCGACTTACTGCAAATGCAAC
60 GTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCAGCAAATGCAAT
* * * *
903045 TACAATAGTAAAATATTATGGGGAAAA-TATAGAAAAGTAAAAC-AATTA
125 TACGATAGTAAAAAATTAAGGGGAAAATTTTA-AAAAGTAAAACGAA-TA
* * * ** * *
903093 G-CTATACTTTTTGTTCTTGATTATGTGAAACAAATACTGTAAAGAAGAGCCGTTTGTAGTCCAA
1 GTGTATACATGTTGTTCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAA
* * * * ** * **** * *
903157 CTGTTAGGATAATTGCCTTCTAAGTAATAGGCCCTAGTTTGACTTTTGGCAAACGTAATTACGAT
66 CGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCAGCAAATGCAATTACGAT
* * * *
903222 AGTAAAAATTTAA-GGGAAAA--TTGAAAAGTAAAATGAAAA
131 AGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATA
* ** * * *
903261 GTGTATACCT-TTCGCGCTTAATTATGTG-ATTGGAATAGTGTAAAGAAGAGGCGTTTGAAGTCC
1 GTGTATACATGTT-GTTCTTGATTATGTGAAAT-GAATAGTGTAAAGAAGAGGCGTTTGTAGTCC
** * * * * *
903324 AACGGTTAGGATAATAACCTTCCAAGCAATAAACCCGAGTTCGACTCCCAACAAATGCGACTACG
64 AACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCAGCAAATGCAATTACG
* *
903389 ATAGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAAAGAGTA
129 ATAGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATA
* * ** * *
903433 GTGTATACATGTTTTTCTAGATTATGCAAAATGAATAGTGTAAAGAAGAGGCATTTGTAGTCCAG
1 GTGTATACATGTTGTTCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAA
* * * * * * **
903498 CGATTATGATAATTTCCTTCCAAGCAATAGAGATCCGAGTTCGAGTCCCAGCAAACACAATTACG
66 CGGTTAGGATAATTGCCTTCCAAGCAAT--AGACCCGGGTTCGACTCCCAGCAAATGCAATTACG
* * * *
903563 ATAGTAAAAAATTAAGGGGAAAATGTTGAAAAGTAAAATGAACA
129 ATAGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATA
* * * * *
903607 GTGTATACGTGTTGTACTTGATTATGTG-AATCAAATAGTTTAAAGAAGAGGCATTTGTAGTCCA
1 GTGTATACATGTTGTTCTTGATTATGTGAAAT-GAATAGTGTAAAGAAGAGGCGTTTGTAGTCCA
* * * * * * ** **
903671 ACGGTTTGGATAATTGCCTTTCATGCAATGGACTC-GGTTCGACTCTCGATAAATATAATAATTA
65 ACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTC-CCAGCAA-AT-GCAATTA
* * * * **
903735 CAATATTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAATGTGTA
127 CGATAGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATA
* * * * * *
903780 ATGTATACTTGTTGTTCTTGATTATGTGAAA-GAAATATTGTGAATAAGAGGCATTTGTAGTCCA
1 GTGTATACATGTTGTTCTTGATTATGTGAAATG-AATAGTGTAAAGAAGAGGCGTTTGTAGTCCA
* * *
903844 ATGGTTAGGATAATTGCCTTCCAAGCAATAGACCTGGGTTCGACTCCCA-CAATTGCAA-TA--A
65 ACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCAGCAAATGCAATTACGA
*
903905 TA--AAATAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATA
130 TAGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATA
* * * * * * ***
903946 GTGTAAACCTTTTGTGCTTGATTATGTGAAATGAAGAATGTAAAGAAGATATGTTTGTAGTCCAA
1 GTGTATACATGTTGTTCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAA
* * * * ** * * *
904011 TGGTTAGGATAATTACCTTCCAAGCAATAGAACCGGGTTTGACTCCTGGCTAATGTAACTACGAT
66 CGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCAGCAAATGCAATTACGAT
* * *
904076 AGTAAAAAATTAAGGGG-AAATATTTGAAACGTAAAACGAGTA
131 AGTAAAAAATTAAGGGGAAAAT-TTTAAAAAGTAAAACGAATA
** * * **
904118 GTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTTTGAAGAAGAGATGTTTGTAGTCCAA
1 GTGTATACATGTTGTTCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAA
** * * * * *
904183 TTGTTAGGATAATTGCCTTCGAATCAATAGACTCGGGCTT-GAGTCCGAGCAAATG-AATTACGA
66 CGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGG-TTCGACTCCCAGCAAATGCAATTACGA
*
904246 TTGTAAAAAATTAAGGGG-AAA-TTTAAAAAGTAAAACGAATA
130 TAGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATA
* * * *
904287 GTGTATACGTGTTGTTCTTGATTATGTGAAA-GAAATAGTGTGAATAAGAGGTGTTTGTAGTCCA
1 GTGTATACATGTTGTTCTTGATTATGTGAAATG-AATAGTGTAAAGAAGAGGCGTTTGTAGTCCA
* * * *** * **
904351 ACGGTTAGGATAATTGCCTT-AAAGCAATAGACCTGGGTTTGACTCATGGCAAACGC-ATTCAAA
65 ACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCAGCAAATGCAATT-ACG
* * *
904414 ATAATAACATAATTAAGGGTAAAATTTTAAAAAGTAAAACGAATA
129 ATAGTAA-AAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATA
* * * * * * ** *
904459 ATGTAAACCTTTTGTGCTTGATTATGTGAAATGAATAATGTAAAGAAGTTGCGTTTGTAGTCGAA
1 GTGTATACATGTTGTTCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAA
* ** * ** *
904524 CGGTTAGGATAATTACCTTCCAAGCAATAGACCAAGGTTTGACTCCTGGCTAATGCAATTACGAT
66 CGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCAGCAAATGCAATTACGAT
* ** * * *
904589 AGTAAAAGATTAAGCAGAAATTTTTGAAAAGTAAAACGAGTA
131 AGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATA
* * * * * *
904631 GTGTATACATGTTGTTCTAT-ATTATGTGAAACGAATAGTGTAAAGAATATGTGTTTCTAGTCTA
1 GTGTATACATGTTGTTCT-TGATTATGTGAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCA
* * * * ** * ***
904695 ACGATTAGGTTAATTTCTTTCCAAGCAAT--ACCCTGGGTTTTACTCCCGGCAAAAAAAAAATTA
65 ACGGTTAGGATAATTGCCTTCCAAGCAATAGACCC-GGGTTCGACTCCCAGC--AAATGCAATTA
* * * * *
904758 TGACAGTAAAAAATTAAGGGAAAAATTTTGAAAAGTAAAACGAGTA
127 CGATAGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATA
* * * * * ** * * *
904804 GTTTGTACGTGTTGTTCTTGATTGTTTGAAACAAATAGTTTAAAGAAGAGCCCTTTGTAGTCCAA
1 GTGTATACATGTTGTTCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAA
* * * * ** * * * * * * *
904869 TGGTTTGAATAATTACCTTCCTTGAAATGGACCAGGGTTCGACTCTCGGTAAATGTAATTACGAT
66 CGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCAGCAAATGCAATTACGAT
* * * * *
904934 ATTAAAATATTAAGGGGAAATTTTTGAAATGTAAAACGAATA
131 AGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATA
* * * ** * * *
904976 GTATTTATC-TTTTGCGCTTGATTATGTGAAATGAATTGTGTAGAGAAGAGGCGTTAGTAGTC
1 GTGTATA-CATGTTGTTCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTC
905038 TAAAAACCTC
Statistics
Matches: 1935, Mismatches: 454, Indels: 144
0.76 0.18 0.06
Matches are distributed among these distances:
165 9 0.00
166 124 0.06
167 13 0.01
168 57 0.03
169 218 0.11
170 114 0.06
171 156 0.08
172 585 0.30
173 378 0.20
174 264 0.14
175 17 0.01
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (172 bp):
GTGTATACATGTTGTTCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAA
CGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCAGCAAATGCAATTACGAT
AGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATA
Found at i:904031 original size:685 final size:676
Alignment explanation
Indices: 902942--904724 Score: 1705
Period size: 685 Copynumber: 2.6 Consensus size: 676
902932 TATATATCTG
* * * * *
902942 CTTGATTA--TGAAACTAATAGTGTAAAGAGGA-G--TTTTTAGTCCAACGGTTTGGATGATTGC
1 CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGC
* * * * * * * *
903002 CTTCCAAGCAATAG-GCTCTGGTTCGACTTACTG-CAAATGCAACT-ACAATAGTAA-AATATTA
66 CTT-AAAGCAATAGACCTC-GGTTCGACTCA-TGACAAAAG-AATTCAAAATAATAACAAAATTA
* * * * *
903063 TGGGGAAAA-TATAGAAAAGTAAAAC-AATTA-GCTATACTTTTTGTTCTTGATTATGTGAAACA
127 AGGGTAAAATTTTA-AAAAGTAAAACGAATAATG-TATAC-TTTTGTTCTTGATTATGTGAAAGA
* * * * *
903125 AATACTGTAAAGAAGAGCCGTTTGTAGTCCAACT-GTTAGGATAATTGCCTTCTAAGTAATAGGC
189 AATAATGTAAAGAAGAGGCGTTTGTAGTCCAA-TGGTTAGGATAATTGCCTTCCAAGCAATA-GA
* * * * * *
903189 CCTAGTTTGACTTTTGGCAAACGTAATTACGATAGTAAAAATTTAA-GGGAAAA--TTGAAAAGT
252 CCTGGTTTGAC---T--CCAAC-TAATTGCAATAATAAAAAATTAAGGGGAAAATTTTGAAAAGT
* * * * * * *
903251 AAAATGAAAAGTGTATACCTTTCGCGCTTAATTATGTG-ATTGGAATAGTGTAAAGAAGAGGCGT
311 AAAACGAATAGTGTATACCTTTTGTGCTT-ATTATGTGAAAT-GAATAGTGTAAAGAAGATGTGT
* *
903315 TTGAAGTCCAACGGTTAGGATAATAACCTTCCAAGCAATA-AACCCGAGTTCGACTCCCAACAAA
374 TTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGAA-CCGAGTTCGACTCCCAACAAA
*
903379 TGCGACTACGATAGTAAAAAATTAAGGGGAAA-ATTTTAAAAAGTAAAAAGAGTAGTGTATACAT
438 TGCAACTACGATAGTAAAAAATTAAGGGGAAATA-TTTAAAAAGTAAAAAGAGTAGTGTATACAT
* ** * *
903443 GTTTTTCTAGATTATGCAAAATGAATAGTGTAAAGAAGAGGCATTTGTAGTCC-AGCGATTATGA
502 GTTGTTCTAGATTATGCAAAACAAATAGTGTAAAGAAGAGACATTTGTAGTCCAAGCG-TTAGGA
*
903507 TAATTTCCTTCCAAGCAATAGAGATCCGAG-TTCGAGTCCCAGCAAACACAATTACGATAGTAAA
566 TAATTGCCTTCCAAGCAATAGA-AT-CGAGCTT-GAGTCCCAGCAAA-ACAATTACGATAGTAAA
* *
903571 AAATTAAGGGGAAAATGTTGAAAAGTAAAATGAACAGTGTATACGTGTTGTA
627 AAATTAAGGGG-AAAT-TTAAAAAGTAAAACGAACAGTGTATACGTGTTGTA
* * *
903623 CTTGATTATGTGAATCAAATAGTTTAAAGAAGAGGCATTTGTAGTCCAACGGTTTGGATAATTGC
1 CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGC
* * * * * * * *
903688 CTTTCATGCAATGGA-CTCGGTTCGACTC-TCGATAAATATAATAATTACAATATTAA-AAAATT
66 C-TTAAAGCAATAGACCTCGGTTCGACTCAT-GACAAA-AGAAT--TCAAAATAATAACAAAATT
* * **
903750 AAGGG-AAAATTTTGAAAAGTAAAATGTGTAATGTATACTTGTTGTTCTTGATTATGTGAAAGAA
126 AAGGGTAAAATTTTAAAAAGTAAAACGAATAATGTATACTT-TTGTTCTTGATTATGTGAAAGAA
* * * *
903814 ATATTGTGAATAAGAGGCATTTGTAGTCCAATGGTTAGGATAATTGCCTTCCAAGCAATAGACCT
190 ATAATGTAAAGAAGAGGCGTTTGTAGTCCAATGGTTAGGATAATTGCCTTCCAAGCAATAGACCT
* * *
903879 GGGTTCGACTCCCAC-AATTGCAATAATAAAATAATTAAGGGGAAAATTTTAAAAAGTAAAACGA
255 -GGTTTGACTCCAACTAATTGCAATAATAAAA-AATTAAGGGGAAAATTTTGAAAAGTAAAACGA
* * * *
903943 ATAGTGTAAACCTTTTGTGCTTGATTATGTGAAATGAAGAATGTAAAGAAGATATGTTTGTAGTC
318 ATAGTGTATACCTTTTGTGCTT-ATTATGTGAAATGAATAGTGTAAAGAAGATGTGTTTGTAGTC
* * * *** * *
904008 CAATGGTTAGGATAATTACCTTCCAAGCAATAGAACCGGGTTTGACTCCTGGCTAATGTAACTAC
382 CAACGGTTAGGATAATTACCTTCCAAGCAATAGAACCGAGTTCGACTCCCAACAAATGCAACTAC
* * * *
904073 GATAGTAAAAAATTAAGGGGAAATATTTGAAACGTAAAACGAGTAGTGTATACATGTTGTTCTTG
447 GATAGTAAAAAATTAAGGGGAAATATTTAAAAAGTAAAAAGAGTAGTGTATACATGTTGTTCTAG
** * * ** **
904138 ATTATGTGAAACAAATAGTTTGAAGAAGAGATGTTTGTAGTCCAATTGTTAGGATAATTGCCTTC
512 ATTATGCAAAACAAATAGTGTAAAGAAGAGACATTTGTAGTCCAAGCGTTAGGATAATTGCCTTC
* * * * * ** *
904203 GAATCAATAGACTCGGGCTTGAGTCCGAGCAAATGAATTACGATTGTAAAAAATTAAGGGGAAAT
577 CAAGCAATAGAATCGAGCTTGAGTCCCAGCAAAACAATTACGATAGTAAAAAATTAAGGGGAAAT
* *
904268 TTAAAAAGTAAAACGAATAGTGTATACGTGTTGTT
642 TTAAAAAGTAAAACGAACAGTGTATACGTGTTGTA
* * * **
904303 CTTGATTATGTGAAAGAAATAGTGTGAATAAGAGGTGTTTGTAGTCCAACGGTTAGGATAATTGC
1 CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGC
* * * * * *
904368 CTTAAAGCAATAGACCTGGGTTTGACTCATGGCAAACGCATTCAAAATAATAACATAATTAAGGG
66 CTTAAAGCAATAGACCTCGGTTCGACTCATGACAAAAGAATTCAAAATAATAACAAAATTAAGGG
* *
904433 TAAAATTTTAAAAAGTAAAACGAATAATGTAAACCTTTTGTGCTTGATTATGTGAAATG-AATAA
131 TAAAATTTTAAAAAGTAAAACGAATAATGTATA-CTTTTGTTCTTGATTATGTGAAA-GAAATAA
** * * * *
904497 TGTAAAGAAGTTGCGTTTGTAGTCGAACGGTTAGGATAATTACCTTCCAAGCAATAGACCAAGGT
194 TGTAAAGAAGAGGCGTTTGTAGTCCAATGGTTAGGATAATTGCCTTCCAAGCAATAGACC-TGGT
** ** *
904562 TTGACTCCTGGCTAA-TGCAATTACGATAGTAAAAGATTAAGCAGAAATTTTTGAAAAGTAAAAC
258 TTGACTCC-AACTAATTGCAA-TA--ATA--AAAA-ATTAAGGGGAAAATTTTGAAAAGTAAAAC
* * * * * * *
904626 GAGTAGTGTATACATGTTGTTCTATATTATGTGAAACGAATAGTGTAAAGAATATGTGTTTCTAG
316 GAATAGTGTATACCTTTTGTGCT-TATTATGTGAAATGAATAGTGTAAAGAAGATGTGTTTGTAG
* * * * *
904691 TCTAACGATTAGGTTAATTTCTTTCCAAGCAATA
380 TCCAACGGTTAGGATAATTACCTTCCAAGCAATA
904725 CCCTGGGTTT
Statistics
Matches: 903, Mismatches: 155, Indels: 84
0.79 0.14 0.07
Matches are distributed among these distances:
677 9 0.01
678 10 0.01
679 124 0.14
680 114 0.13
681 30 0.03
682 30 0.03
683 48 0.05
684 6 0.01
685 355 0.39
686 46 0.05
687 24 0.03
688 106 0.12
689 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.30
Consensus pattern (676 bp):
CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGC
CTTAAAGCAATAGACCTCGGTTCGACTCATGACAAAAGAATTCAAAATAATAACAAAATTAAGGG
TAAAATTTTAAAAAGTAAAACGAATAATGTATACTTTTGTTCTTGATTATGTGAAAGAAATAATG
TAAAGAAGAGGCGTTTGTAGTCCAATGGTTAGGATAATTGCCTTCCAAGCAATAGACCTGGTTTG
ACTCCAACTAATTGCAATAATAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTA
TACCTTTTGTGCTTATTATGTGAAATGAATAGTGTAAAGAAGATGTGTTTGTAGTCCAACGGTTA
GGATAATTACCTTCCAAGCAATAGAACCGAGTTCGACTCCCAACAAATGCAACTACGATAGTAAA
AAATTAAGGGGAAATATTTAAAAAGTAAAAAGAGTAGTGTATACATGTTGTTCTAGATTATGCAA
AACAAATAGTGTAAAGAAGAGACATTTGTAGTCCAAGCGTTAGGATAATTGCCTTCCAAGCAATA
GAATCGAGCTTGAGTCCCAGCAAAACAATTACGATAGTAAAAAATTAAGGGGAAATTTAAAAAGT
AAAACGAACAGTGTATACGTGTTGTA
Found at i:904419 original size:513 final size:505
Alignment explanation
Indices: 902456--905037 Score: 1848
Period size: 513 Copynumber: 5.0 Consensus size: 505
902446 AAATAAGAGC
** * * * *
902456 CGTTTGTAGTCCAACAATTAGGATAATTTCCTTCCAAGCAATAGATTCGGGTTCGACTCCCGGTA
1 CGTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGA-CCGGGTTCGACTCCTGGCA
** * * ** * *
902521 AACACAATTACTATAGTAAAAGAATTAAGGGG-AGTTGTTGAAAAGTAAAATGAGTAGTGTATAC
65 AATGCAACTACGATAGTAAAA-AATTAAGGGGAAAATATTGAAAAGTAAAACGAGTAGTGTATAC
* * * * * * * * **
902585 ATGTTATTATCGGTTATGTGAAACCAAATAATTTAAGGAAGAGGCATTTGTAGTCCAACCATTAG
129 ATGTTGTTCTTGATTATGTGAAA-CAAATAGTTTAAAGAAGAGACGTTTGTAGTCCAACTGTTAG
* * ** * * * * * *
902650 GATAATTGCCACTCCAAACTGTAGTCCTGGGTTCGACTCTCGA-AAAATATAATTTCGATAGTAA
193 GATAATTG-C-CTTCAATCAATAG-ACTCGGTT-GACTC-CGAGCAAAT-GAATTACGATTGTAA
* * * * * * * * *
902714 AAAATAAAGTGGTAAATTTTGAATAGTAAAACGAATAGTTTTTAGCAT-TTCTGCTTGATTATGT
252 AAAATTAAG-GGGAAA-TTTGAAAAGTAAAATGAATAGTGTATA-CCTGTTGTTCTTGATTATGT
** * * * * * ** * *
902778 GAAACTAATACTGTAAAAAAGAGGCGTTTGTAATCCTATTGTTAGGATAATTGTCTTGCAAGCAA
314 GAAAGAAATAGTGTGAATAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAA
* * * * *** * ** * * *
902843 CA-AACTCGGGTTTGAGTCCCGGCAAAAAAATT-ATGATTGTAAAAAAATTAAGTGGAATATTTT
379 TAGACCT-GGGTTCGA--CTC--CAAACGCATTCA-AATAATAAAATAATTAAGGGGAAAATTTT
* * * ** * *
902906 --GAAGTAAAACAAATAGTATATATATATATATATCTGCTTGATTA--TGAAACT-AATAGTGTA
438 AAAAAGTAAAACGAATAGTGTA-A-ACCT-T-T-TGTGCTTGATTATGTGAAA-TGAATAATGTA
902966 AAG-AG--G
497 AAGAAGATG
* * * * * * * *
902972 AGTTTTTAGTCCAACGGTTTGGATGATTGCCTTCCAAGCAATAGGCTCTGGTTCGACTTACT-GC
1 CGTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGAC-CGGGTTCGAC-TCCTGGC
* * * * * * *
903036 AAATGCAACTACAATAGTAAAATATTATGGGGAAAATATAGAAAAGTAAAACAATTAG-CTATAC
64 AAATGCAACTACGATAGTAAAAAATTAAGGGGAAAATATTGAAAAGTAAAACGAGTAGTGTATAC
* * * * *
903100 TTTTTGTTCTTGATTATGTGAAACAAATACTGTAAAGAAGAGCCGTTTGTAGTCCAACTGTTAGG
129 ATGTTGTTCTTGATTATGTGAAACAAATAGTTTAAAGAAGAGACGTTTGTAGTCCAACTGTTAGG
* * * ** * *
903165 ATAATTGCCTTCTAAGT-AATAGGCCCTAGTTTGACTTTTG-GCAAACGTAATTACGATAGTAAA
194 ATAATTGCCTTC-AA-TCAATA-G-ACTCGGTTGAC-TCCGAGCAAATG-AATTACGATTGTAAA
* * * ** * *
903228 AATTTAA-GGGAAAATTGAAAAGTAAAATGAAAAGTGTATACCT-TTCGCGCTTAATTATGTGAT
253 AAATTAAGGGGAAATTTGAAAAGTAAAATGAATAGTGTATACCTGTT-GTTCTTGATTATGTGAA
* * * * * ** *
903291 TGGAATAGTGTAAAGAAGAGGCGTTTGAAGTCCAACGGTTAGGATAATAACCTTCCAAGCAATAA
317 AGAAATAGTGTGAATAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAG
* * * ** * *
903356 ACCCGAGTTCGACTCCCAACAAATGCGACTACGATAGTAAAA-AATTAAGGGGAAAATTTTAAAA
382 ACCTGGGTTCGACTCCAAACGCATTC-A--A--ATAATAAAATAATTAAGGGGAAAATTTTAAAA
* * * * * * ** * *
903420 AGTAAAAAGAGTAGTGTATACATGTTT-TTCTAGATTATGCAAAATGAATAGTGTAAAGAAGAGG
442 AGTAAAACGAATAGTGTAAACCT-TTTGTGCTTGATTATGTGAAATGAATAATGTAAAGAAGATG
* * * * * * * **
903484 CATTTGTAGTCCAGCGATTATGATAATTTCCTTCCAAGCAATAGAGATCCGAGTTCGAGTCCCAG
1 CGTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGCAAT--AGA-CCGGGTTCGACTCCTGG
** * * * **
903549 CAAACACAATTACGATAGTAAAAAATTAAGGGGAAAATGTTGAAAAGTAAAATGAACAGTGTATA
63 CAAATGCAACTACGATAGTAAAAAATTAAGGGGAAAATATTGAAAAGTAAAACGAGTAGTGTATA
* * * * * * *
903614 CGTGTTGTACTTGATTATGTGAATCAAATAGTTTAAAGAAGAGGCATTTGTAGTCCAACGGTTTG
128 CATGTTGTTCTTGATTATGTGAAACAAATAGTTTAAAGAAGAGACGTTTGTAGTCCAACTGTTAG
* ** * *
903679 GATAATTGCCTTTC-ATGCAATGGACTCGGTTCGACTCTCGATAAATATAATAATTACAATAT-T
193 GATAATTGCC-TTCAAT-CAATAGACTCGGTT-GACTC-CGAGCAA-AT--GAATTACGAT-TGT
* ** * *
903742 AAAAAATTAAGGGAAAATTTTGAAAAGTAAAATGTGTAATGTATACTTGTTGTTCTTGATTATGT
250 AAAAAATTAAGGGGAAA-TTTGAAAAGTAAAATGAATAGTGTATACCTGTTGTTCTTGATTATGT
* * *
903807 GAAAGAAATATTGTGAATAAGAGGCATTTGTAGTCCAATGGTTAGGATAATTGCCTTCCAAGCAA
314 GAAAGAAATAGTGTGAATAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAA
* *
903872 TAGACCTGGGTTCGACTCC-CAC-AATTGC-AATAATAAAATAATTAAGGGGAAAATTTTAAAAA
379 TAGACCTGGGTTCGACTCCAAACGCATT-CAAATAATAAAATAATTAAGGGGAAAATTTTAAAAA
* *
903934 GTAAAACGAATAGTGTAAACCTTTTGTGCTTGATTATGTGAAATGAAGAATGTAAAGAAGATA
443 GTAAAACGAATAGTGTAAACCTTTTGTGCTTGATTATGTGAAATGAATAATGTAAAGAAGATG
* * * *
903997 TGTTTGTAGTCCAATGGTTAGGATAATTACCTTCCAAGCAATAGAACCGGGTTTGACTCCTGGCT
1 CGTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAG-ACCGGGTTCGACTCCTGGCA
* *
904062 AATGTAACTACGATAGTAAAAAATTAAGGGG-AAATATTTGAAACGTAAAACGAGTAGTGTATAC
65 AATGCAACTACGATAGTAAAAAATTAAGGGGAAAATA-TTGAAAAGTAAAACGAGTAGTGTATAC
* * *
904126 ATGTTGTTCTTGATTATGTGAAACAAATAGTTTGAAGAAGAGATGTTTGTAGTCCAATTGTTAGG
129 ATGTTGTTCTTGATTATGTGAAACAAATAGTTTAAAGAAGAGACGTTTGTAGTCCAACTGTTAGG
*
904191 ATAATTGCCTTCGAATCAATAGACTCGGGCTTGAGTCCGAGCAAATGAATTACGATTGTAAAAAA
194 ATAATTGCCTTC-AATCAATAGACTC-GG-TTGACTCCGAGCAAATGAATTACGATTGTAAAAAA
* * *
904256 TTAAGGGGAAATTTAAAAAGTAAAACGAATAGTGTATACGTGTTGTTCTTGATTATGTGAAAGAA
256 TTAAGGGGAAATTTGAAAAGTAAAATGAATAGTGTATACCTGTTGTTCTTGATTATGTGAAAGAA
* *
904321 ATAGTGTGAATAAGAGGTGTTTGTAGTCCAACGGTTAGGATAATTGCCTT-AAAGCAATAGACCT
321 ATAGTGTGAATAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCT
* * *
904385 GGGTTTGACTCATGGCAAACGCATTCAAAATAATAACATAATTAAGGGTAAAATTTTAAAAAGTA
386 GGGTTCGACTC----CAAACGCATTC-AAATAATAAAATAATTAAGGGGAAAATTTTAAAAAGTA
* *
904450 AAACGAATAATGTAAACCTTTTGTGCTTGATTATGTGAAATGAATAATGTAAAGAAGTTG
446 AAACGAATAGTGTAAACCTTTTGTGCTTGATTATGTGAAATGAATAATGTAAAGAAGATG
* * * *
904510 CGTTTGTAGTCGAACGGTTAGGATAATTACCTTCCAAGCAATAGACCAAGGTTTGACTCCTGGCT
1 CGTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGACC-GGGTTCGACTCCTGGCA
* * ** * *
904575 AATGCAATTACGATAGTAAAAGATTAAGCAGAAATTTTTGAAAAGTAAAACGAGTAGTGTATACA
65 AATGCAACTACGATAGTAAAAAATTAAGGGGAAAATATTGAAAAGTAAAACGAGTAGTGTATACA
* * * * * *
904640 TGTTGTTCTAT-ATTATGTGAAACGAATAGTGTAAAGAATATG-TGTTTCTAGTCTAAC-GATTA
130 TGTTGTTCT-TGATTATGTGAAACAAATAGTTTAAAGAAGA-GACGTTTGTAGTCCAACTG-TTA
* * * * ** * * ** * **
904702 GGTTAATTTCTTTCCAAGCAATACCCTGGGTTTTACTCCCG-GCAAAAAAAAAATTATGACAGTA
192 GGATAATTGCCTT-CAATCAATAGACTCGG-TTGACT-CCGAGC---AAATGAATTACGATTGTA
* * * * * * * *
904766 AAAAATTAAGGGAAAAATTTTGAAAAGTAAAACGAGTAGTTTGTACGTGTTGTTCTTGATTGTTT
251 AAAAATTAAGGG-GAAA-TTTGAAAAGTAAAATGAATAGTGTATACCTGTTGTTCTTGATTATGT
* * * * * * * * * * ** *
904831 GAAACAAATAGTTTAAAGAAGAGCCCTTTGTAGTCCAATGGTTTGAATAATTACCTTCCTTGAAA
314 GAAAGAAATAGTGTGAATAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAA
* * * * * * *
904896 TGGACCAGGGTTCGACTCTCGGTAAATGTAATT-ACGATATTAAAAT-ATTAAGGGGAAATTTTT
379 TAGACCTGGGTTCGACTC-C---AAACG-CATTCA-AATAATAAAATAATTAAGGGGAAAATTTT
* * * ** * * ** *
904959 GAAATGTAAAACGAATAGTATTTATCTTTTGCGCTTGATTATGTGAAATGAATTGTGTAGAGAAG
438 AAAAAGTAAAACGAATAGTGTAAACCTTTTGTGCTTGATTATGTGAAATGAATAATGTAAAGAAG
*
905024 AGG
503 ATG
*
905027 CGTTAGTAGTC
1 CGTTTGTAGTC
905038 TAAAAACCTC
Statistics
Matches: 1652, Mismatches: 336, Indels: 155
0.77 0.16 0.07
Matches are distributed among these distances:
506 30 0.02
507 103 0.06
508 30 0.02
509 21 0.01
510 121 0.07
511 161 0.10
512 87 0.05
513 419 0.25
514 120 0.07
515 131 0.08
516 90 0.05
517 191 0.12
518 38 0.02
519 108 0.07
520 2 0.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (505 bp):
CGTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGACCGGGTTCGACTCCTGGCAA
ATGCAACTACGATAGTAAAAAATTAAGGGGAAAATATTGAAAAGTAAAACGAGTAGTGTATACAT
GTTGTTCTTGATTATGTGAAACAAATAGTTTAAAGAAGAGACGTTTGTAGTCCAACTGTTAGGAT
AATTGCCTTCAATCAATAGACTCGGTTGACTCCGAGCAAATGAATTACGATTGTAAAAAATTAAG
GGGAAATTTGAAAAGTAAAATGAATAGTGTATACCTGTTGTTCTTGATTATGTGAAAGAAATAGT
GTGAATAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCTGGGTT
CGACTCCAAACGCATTCAAATAATAAAATAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATAG
TGTAAACCTTTTGTGCTTGATTATGTGAAATGAATAATGTAAAGAAGATG
Found at i:905040 original size:345 final size:339
Alignment explanation
Indices: 902392--905037 Score: 1495
Period size: 341 Copynumber: 7.7 Consensus size: 339
902382 CACAATTACT
* ** * * *
902392 AGTAAAATGAGTGGTGTATACGTGTTGGTCTTGATTAT-TAGAAACAAATAGTTTAAATAAGAGC
1 AGTAAAACGAGTAATGTATACATGTTGTTCTTGATTATGT-GAAACAAATAGTTTAAAGAAGAG-
*** * *
902456 CGTTTGTAGTCCAACAATTAGGATAATTTCCTTCCAAGCAATAGATTC-GGGTTCGACTCCCGGT
64 CGTTTGTAGTCCAATGGTTAGGATAATTACCTTCCAAGCAATAGA-CCAGGGTTCGACT-CCGGT
** * * * * * * * *
902520 AAACACAATTACTATAGTAAAAGAATTAAGGGG-AGTTGTTGAAAAGTAAAATGAGTAGTGTATA
127 -AATGCAATTACGATATTAAAA-TATTAAGGGGAAATTTTTAAAAAGTAAAACGAATAGTGTATA
* ** * * ** * * * ** **
902584 CATGTTATTATCGGTTATGTGAAACCAAATAATTTAAGGAAGAGGCATTTGTAGTCCAACCATTA
190 CATGTTGTGCTTGATTATGTGAAA-TGAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAACGGTTA
* * * ** * * * * *
902649 GGATAATTGCCACTCCAAACTGTAGTCCTGGGTTCGACT-CTCG-AAAAATATAATTTCGATAGT
254 GGATAATTACC-TTCCAAGCAATA-ACCTGGGTTTGACTCCTGGCAAAAATAAAATAT-GA-AGT
* * *
902712 AAAAAATAAAGTGGTAAATTTTGAAT
315 AAAAAATTAAG-GGAAAATTTTGAAA
* * * * * * * * * *
902738 AGTAAAACGAATAGTTTTTAGCAT-TTCTGCTTGATTATGTGAAACTAATACTGTAAAAAAGAGG
1 AGTAAAACGAGTAATGTATA-CATGTTGTTCTTGATTATGTGAAACAAATAGTTTAAAGAAGA-G
* * * ** * * * * * *
902802 CGTTTGTAATCCTATTGTTAGGATAATTGTCTTGCAAGCAACAAACTC-GGGTTTGAGTCCCGGC
64 CGTTTGTAGTCCAATGGTTAGGATAATTACCTTCCAAGCAATAGAC-CAGGGTTCGACT-CCGGT
*** * * * * *
902866 AAAAAAATTATGAT-TGTAAAAAAATTAAGTGG-AATATTTT--GAAGTAAAACAAATAGTATAT
127 AATGCAATTACGATAT-T-AAAATATTAAGGGGAAAT-TTTTAAAAAGTAAAACGAATAG----T
* * * * *
902927 ATATATATATATCTGCTTGATTA--TGAAACT-AATAGTGTAAAGAGGA-GT-TTT-TAGTCCAA
185 GTATACATGT-TGTGCTTGATTATGTGAAA-TGAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAA
* * * * * * * *
902986 CGGTTTGGATGATTGCCTTCCAAGCAATAGGCTCT-GGTTCGACTTACT-GC--AAATGCAACTA
248 CGGTTAGGATAATTACCTTCCAAGCAATA-AC-CTGGGTTTGAC-TCCTGGCAAAAAT-AAAATA
** * * * *
903047 CAATAGTAAAATATTATGGGGAAAATATAGAAA
309 TGA-AGTAAAAAATTA-AGGGAAAATTTTGAAA
* * * * * *
903080 AGTAAAAC-AATTA-GCTATACTTTTTGTTCTTGATTATGTGAAACAAATACTGTAAAGAAGAGC
1 AGTAAAACGAGTAATG-TATACATGTTGTTCTTGATTATGTGAAACAAATAGTTTAAAGAAGAG-
* * * * *** * **
903143 CGTTTGTAGTCCAACT-GTTAGGATAATTGCCTTCTAAGTAATAGGCCCTAGTTTGACTTTTGGC
64 CGTTTGTAGTCCAA-TGGTTAGGATAATTACCTTCCAAGCAATAGACCAGGGTTCGAC-TCCGG-
* * * * * * * *
903207 AAACGTAATTACGATAGTAAAA-ATTTAA-GGGAAA--ATTGAAAAGTAAAATGAAAAGTGTATA
126 TAATGCAATTACGATATTAAAATA-TTAAGGGGAAATTTTTAAAAAGTAAAACGAATAGTGTATA
* * * * * *
903268 CCT-TTCGCGCTTAATTATGTG-ATTGGAATAGTGTAAAGAAGAGGCGTTTGAAGTCCAACGGTT
190 CATGTT-GTGCTTGATTATGTGAAAT-GAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAACGGTT
* * * * ** * *
903331 AGGATAATAACCTTCCAAGCAATAAACCCGAGTTCGACTCC---CAACAAATGCGACTACGATAG
253 AGGATAATTACCTTCCAAGCAAT-AACCTGGGTTTGACTCCTGGCAA-AAAT-AAAATATGA-AG
*
903393 TAAAAAATTAAGGGGAAAATTTTAAAA
314 TAAAAAATTAA-GGGAAAATTTTGAAA
* * * * ** ** *
903420 AGTAAAAAGAGTAGTGTATACATGTTTTTCTAGATTATGCAAAATGAATAGTGTAAAGAAGAGGC
1 AGTAAAACGAGTAATGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTTTAAAGAAGA-GC
* ** * * * * *
903485 ATTTGTAGTCCAGCGATTATGATAATTTCCTTCCAAGCAATAGAGATCC-GAGTTCGAGTCCCAG
65 GTTTGTAGTCCAATGGTTAGGATAATTACCTTCCAAGCAAT--AGA-CCAGGGTTCGACT-CC-G
** ** * * * * * * *
903549 CAAACACAATTACGATAGTAAAAAATTAAGGGGAAAATGTTGAAAAGTAAAATGAACAGTGTATA
125 GTAATGCAATTACGATATTAAAATATTAAGGGGAAATTTTTAAAAAGTAAAACGAATAGTGTATA
* * * * ** *
903614 CGTGTTGTACTTGATTATGTG-AATCAAATAGTTTAAAGAAGAGGCATTTGTAGTCCAACGGTTT
190 CATGTTGTGCTTGATTATGTGAAAT-GAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAACGGTTA
* * * * * * * **
903678 GGATAATTGCCTTTCATGCAATGGA-CTCGGTTCGACT-CTCG-ATAAATATAATAATTACAATA
254 GGATAATTACCTTCCAAGCAAT-AACCTGGGTTTGACTCCTGGCA-AAA-ATAA-AA-TATGA-A
*
903740 TTAAAAAATTAAGGGAAAATTTTGAAA
313 GTAAAAAATTAAGGGAAAATTTTGAAA
* * * * * *
903767 AGTAAAATGTGTAATGTATACTTGTTGTTCTTGATTATGTGAAAGAAATA-TTGTGAATAAGAGG
1 AGTAAAACGAGTAATGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTT-TAAAGAAGA-G
* * * *
903831 CATTTGTAGTCCAATGGTTAGGATAATTGCCTTCCAAGCAATAGACCTGGGTTCGACTCC---CA
64 CGTTTGTAGTCCAATGGTTAGGATAATTACCTTCCAAGCAATAGACCAGGGTTCGACTCCGGTAA
* * * * * *
903893 --CAATTGCAATAATAAAATAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATAGTGTAAACCT
129 TGCAATTACGATATTAAAAT-ATTAAGGGGAAATTTTTAAAAAGTAAAACGAATAGTGTATACAT
* * * ** *
903956 TTTGTGCTTGATTATGTGAAATGAAGAATGTAAAGAAGATATGTTTGTAGTCCAATGGTTAGGAT
193 GTTGTGCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAACGGTTAGGAT
* ** * *
904021 AATTACCTTCCAAGCAATAGAACC-GGGTTTGACTCCTGGCTAATGT-AACTACGATAGTAAAAA
258 AATTACCTTCCAAGCAAT--AACCTGGGTTTGACTCCTGGCAAAAATAAAATATGA-AGTAAAAA
*
904084 ATTAAGGGGAAATATTTGAAA
320 ATTAAGGGAAAAT-TTTGAAA
* * * *
904105 CGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTTTGAAGAAGAGAT
1 AGTAAAACGAGTAATGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTTTAAAGAAGAG-C
* * * * *
904170 GTTTGTAGTCCAATTGTTAGGATAATTGCCTTCGAATCAATAGACTC-GGGCTT-GAGTCCGAGC
65 GTTTGTAGTCCAATGGTTAGGATAATTACCTTCCAAGCAATAGAC-CAGGG-TTCGACTCCG-G-
* *
904233 AAATG-AATTACGAT-TGTAAAAAATTAAGGGGAAA--TTTAAAAAGTAAAACGAATAGTGTATA
126 TAATGCAATTACGATAT-TAAAATATTAAGGGGAAATTTTTAAAAAGTAAAACGAATAGTGTATA
* * * *
904294 CGTGTTGTTCTTGATTATGTGAAA-GAAATAGTGTGAATAAGAGGTGTTTGTAGTCCAACGGTTA
190 CATGTTGTGCTTGATTATGTGAAATG-AATAGTGTAAAGAAGAGGTGTTTGTAGTCCAACGGTTA
* * * * *
904358 GGATAATTGCCTT-AAAGCAATAGACCTGGGTTTGACTCATGGCAAACGCATTCAAA-AT-AA-T
254 GGATAATTACCTTCCAAGCAATA-ACCTGGGTTTGACTCCTGGCAAA---AATAAAATATGAAGT
* *
904419 AACATAATTAAGGGTAAAATTTTAAAA
315 AA-AAAATTAAGGG-AAAATTTTGAAA
* * * * * ** * * *
904446 AGTAAAACGAATAATGTAAACCTTTTGTGCTTGATTATGTGAAATGAATAATGTAAAGAAGTTGC
1 AGTAAAACGAGTAATGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTTTAAAGAAG-AGC
* * * *
904511 GTTTGTAGTCGAACGGTTAGGATAATTACCTTCCAAGCAATAGACCAAGGTTTGACTCCTGGCTA
65 GTTTGTAGTCCAATGGTTAGGATAATTACCTTCCAAGCAATAGACCAGGGTTCGACTCC-GG-TA
* * ** * *
904576 ATGCAATTACGATAGTAAAAGATTAAGCAGAAATTTTTGAAAAGTAAAACGAGTAGTGTATACAT
128 ATGCAATTACGATATTAAAATATTAAGGGGAAATTTTTAAAAAGTAAAACGAATAGTGTATACAT
* * * * * * * *
904641 GTTGTTCTAT-ATTATGTGAAACGAATAGTGTAAAGAATATGTGTTTCTAGTCTAACGATTAGGT
193 GTTGTGCT-TGATTATGTGAAATGAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAACGGTTAGGA
* * * * * *
904705 TAATTTCTTTCCAAGCAATACCCTGGGTTTTACTCCCGGCAAAAAAAAAATTATGACAGTAAAAA
257 TAATTACCTTCCAAGCAATAACCTGGGTTTGACTCCTGGCAAAAATAAAA-TATGA-AGTAAAAA
904770 ATTAAGGGAAAAATTTTGAAA
320 ATTAAGGG-AAAATTTTGAAA
* * * * * *
904791 AGTAAAACGAGTAGTTTGTACGTGTTGTTCTTGATTGTTTGAAACAAATAGTTTAAAGAAGAGCC
1 AGTAAAACGAGTAATGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTTTAAAGAAGAG-C
* * * ** * *
904856 CTTTGTAGTCCAATGGTTTGAATAATTACCTTCCTTGAAATGGACCAGGGTTCGACTCTCGGTAA
65 GTTTGTAGTCCAATGGTTAGGATAATTACCTTCCAAGCAATAGACCAGGGTTCGACTC-CGGT-A
* * * * *
904921 ATGTAATTACGATATTAAAATATTAAGGGGAAATTTTTGAAATGTAAAACGAATAGTATTTATC-
128 ATGCAATTACGATATTAAAATATTAAGGGGAAATTTTTAAAAAGTAAAACGAATAGTGTATA-CA
* * * * * *
904985 TTTTGCGCTTGATTATGTGAAATGAATTGTGTAGAGAAGAGGCGTTAGTAGTC
192 TGTTGTGCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGTGTTTGTAGTC
905038 TAAAAACCTC
Statistics
Matches: 1797, Mismatches: 387, Indels: 233
0.74 0.16 0.10
Matches are distributed among these distances:
334 1 0.00
335 10 0.01
336 7 0.00
337 43 0.02
338 127 0.07
339 117 0.07
340 147 0.08
341 384 0.21
342 99 0.06
343 77 0.04
344 156 0.09
345 266 0.15
346 215 0.12
347 116 0.06
348 25 0.01
349 7 0.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (339 bp):
AGTAAAACGAGTAATGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTTTAAAGAAGAGCG
TTTGTAGTCCAATGGTTAGGATAATTACCTTCCAAGCAATAGACCAGGGTTCGACTCCGGTAATG
CAATTACGATATTAAAATATTAAGGGGAAATTTTTAAAAAGTAAAACGAATAGTGTATACATGTT
GTGCTTGATTATGTGAAATGAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAACGGTTAGGATAAT
TACCTTCCAAGCAATAACCTGGGTTTGACTCCTGGCAAAAATAAAATATGAAGTAAAAAATTAAG
GGAAAATTTTGAAA
Found at i:905102 original size:134 final size:133
Alignment explanation
Indices: 904926--905170 Score: 310
Period size: 133 Copynumber: 1.8 Consensus size: 133
904916 GGTAAATGTA
* * * * * * * * *
904926 ATTACGATATTAAAATATTAAGGGGAAATTTTTGAAATGTAAAACGAATAGTATTTATCTTTTGC
1 ATTACGATAGTAAAAAATTAAAGGGAAAATTTTAAAAAGTAAAACGAATAGT-TATAGCTGTTGC
** * * *
904991 GCTTGATTATGTGAAATGAATTGTGTAGAGAAGAGGCGTTAGTAGTCTAAAAACCTCCTGAAAAA
65 GCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGACGTTAGTAGTCTAAAAACCTCCTGAAAAA
905056 CGTT
130 CGTT
* * **
905060 ATTACGATAGTAAAAAATTAAAGGGAAAATTTTAAAAAGTAAAACGAGTAGTTATAGGTGTTGTT
1 ATTACGATAGTAAAAAATTAAAGGGAAAATTTTAAAAAGTAAAACGAATAGTTATAGCTGTTGCG
*
905125 CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGACGTTTGTAGTC
66 CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGACGTTAGTAGTC
905171 CAACCATTAG
Statistics
Matches: 92, Mismatches: 19, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
133 47 0.51
134 45 0.49
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.32
Consensus pattern (133 bp):
ATTACGATAGTAAAAAATTAAAGGGAAAATTTTAAAAAGTAAAACGAATAGTTATAGCTGTTGCG
CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGACGTTAGTAGTCTAAAAACCTCCTGAAAAAC
GTT
Found at i:905332 original size:307 final size:304
Alignment explanation
Indices: 904762--905344 Score: 707
Period size: 307 Copynumber: 1.9 Consensus size: 304
904752 AAATTATGAC
* *
904762 AGTAAAAAATTAAGGGAAAAATTTTGAAAAGTAAAACGAGTAGTTTGTACGTGTTGTTCTTGATT
1 AGTAAAAAATTAAGGGAAAAATTTTAAAAAGTAAAACGAGTAGTTTATACGTGTTGTTCTTGATT
* * * * *** * *
904827 GTTTGAAACAAATAGTTTAAAGAAGAGCCCTTTGTAGTCCAATGGTTTGAATAATTACCTTCCTT
66 ATGTGAAACAAATAGTGTAAAGAAGAGACCTTTGTAGTCCAACCATTAGAATAATTACATTCC-T
* * *
904892 GAAATGGACCAGGGTTCGACTCTCGGTAAATGTAATTACGATATTAAAATATTAAGGGGAAATTT
130 -AAATGGACCAGGGTTCGACTCTCGGAAAATGTAATTACGATAGTAAAAAATTAAGGGGAAATTT
* * ** *
904957 TTGAAATGTAAAACGAATAGTATTTATCTTTTGCGCTTGATTATGTGAAATGAATTGTGTAGAGA
194 TTGAAAAGTAAAACGAATAGTATTTATCTTTTGCGCTTGATTATATGAAATGAATACTGTAAAGA
*
905022 AGAGGCGTTAGTAGTCTAAAAACCTCCTGAAAAACGTTATTACGAT
259 AGAGGCATTAGTAGTCTAAAAACCTCCTGAAAAACGTTATTACGAT
*
905068 AGTAAAAAATTAAAGGG-AAAATTTTAAAAAGTAAAACGAGTAG-TTATAGGTGTTGTTCTTGAT
1 AGTAAAAAATT-AAGGGAAAAATTTTAAAAAGTAAAACGAGTAGTTTATACGTGTTGTTCTTGAT
* *
905131 TATGTGAAACAAATAGTGTAAAGAAGAGACGTTTGTAGTCCAACCATTAGGATAATTGCACATTC
65 TATGTGAAACAAATAGTGTAAAGAAGAGACCTTTGTAGTCCAACCATTAGAATAATT--ACATTC
* * *
905196 C-AAATAGTAGATCC-GGGTTCGACT-TGCGGAAAAT-TCAGTTTCGATAGTAAAAAATTATGTG
128 CTAAAT-G--GA-CCAGGGTTCGACTCT-CGGAAAATGT-AATTACGATAGTAAAAAATTAAG-G
* * *
905257 GTAAA-TTTTGAAAAGTAAAACGAATAGTTTTTA-CTGTTTGTGCTTGATTATATGAAACT-AAT
186 GGAAATTTTTGAAAAGTAAAACGAATAGTATTTATCT-TTTGCGCTTGATTATATGAAA-TGAAT
*
905319 ACTGTAAAGAAGAGGCATTTGTAGTC
249 ACTGTAAAGAAGAGGCATTAGTAGTC
905345 ATACTGTTAG
Statistics
Matches: 235, Mismatches: 30, Indels: 23
0.82 0.10 0.08
Matches are distributed among these distances:
304 4 0.02
305 66 0.28
306 40 0.17
307 117 0.50
308 8 0.03
ACGTcount: A:0.37, C:0.10, G:0.21, T:0.32
Consensus pattern (304 bp):
AGTAAAAAATTAAGGGAAAAATTTTAAAAAGTAAAACGAGTAGTTTATACGTGTTGTTCTTGATT
ATGTGAAACAAATAGTGTAAAGAAGAGACCTTTGTAGTCCAACCATTAGAATAATTACATTCCTA
AATGGACCAGGGTTCGACTCTCGGAAAATGTAATTACGATAGTAAAAAATTAAGGGGAAATTTTT
GAAAAGTAAAACGAATAGTATTTATCTTTTGCGCTTGATTATATGAAATGAATACTGTAAAGAAG
AGGCATTAGTAGTCTAAAAACCTCCTGAAAAACGTTATTACGAT
Found at i:905934 original size:341 final size:340
Alignment explanation
Indices: 905303--905939 Score: 847
Period size: 341 Copynumber: 1.9 Consensus size: 340
905293 TTTGTGCTTG
* * *
905303 ATTATATGAAACTAATACTGTAAAGAAGAGGCATTTGTAGTCATACTGTTAGGATAATTTCCTTA
1 ATTATATGAAACGAATACTGTAAAGAAGAGGCATTTGTAGTCAAACTGTTAGGATAAATTCCTTA
* * *
905368 CAAGCAATAAACCCGAGTTTGATTCCCAGCAAAAGAAATTACGATTATAAAAAATTAAGGGGAAA
66 CAAGCAATAAACCCGAGTTTAATT-CCAGCAAAAGAAATCACGATTACAAAAAATTAAGGGGAAA
905433 TTTTGAAAAATAAAACAAATAGTATATATATACCTTTTATGCTTGATAAAATGAAACAAATAGTG
130 TTTTGAAAAATAAAACAAATAG---ATATATACCTTTTATGCTTGATAAAATGAAACAAATAGTG
* * *
905498 TAAAGAGGAGTTTTTAGTCCAACGGTTAGGATGATTGCCTTCCAAGAAATAGACTCTAGTTCGAC
192 TAAAAAGGAGTTTTTAGTCCAACGGTTAGGATGATTGCCTTCCAAGAAATAAACTCCAGTTCGAC
*
905563 TTCCTGCAAATGCAATTACAATAGTAAAATATTAAGTGGAAAATTTGGAAAAGTAAGACGATTAA
257 TTCCTGCAAATGCAATTACAATAATAAAATATTAAGTGGAAAATTTGGAAAAGTAAGACGATTAA
905628 CGTAAATCTTTTATTCTTA
322 CGTAAATCTTTTATTCTTA
* * *
905647 ATTATGTGAAACGAATATTGTAAAGAAGAGGCATTTGTAGTCAAACTGTTAGGATAAATTCCTTC
1 ATTATATGAAACGAATACTGTAAAGAAGAGGCATTTGTAGTCAAACTGTTAGGATAAATTCCTTA
** * * * * * *
905712 CAAGC-ATAGGCCCGAGTTTAACTT-CTGGAAAACGCAATCACGATTGCAAAAAGTTCAGGGGAA
66 CAAGCAATAAACCCGAGTTTAA-TTCCAGCAAAA-GAAATCACGATTACAAAAAATTAAGGGG-A
* * * ** *
905775 AATTTTGAAAAGTAAAA-AAATAG-TATATACCTTTTGTG-TTGATTATGTGAAACAAATAGTTT
128 AATTTTGAAAAATAAAACAAATAGATATATACCTTTTATGCTTGATAAAATGAAACAAATAGTGT
* * *
905837 AAGAAAATGGTGTTTTTAGTTCAACGGTTAGGATGATTGCCTTCCAAGCAATAAAC-CCAGGTTC
193 -A-AAAA-GGAGTTTTTAGTCCAACGGTTAGGATGATTGCCTTCCAAGAAATAAACTCCA-GTTC
905901 GAC-TCACTGCAAATGCAATTACAATAATAAAATATTAAG
254 GACTTC-CTGCAAATGCAATTACAATAATAAAATATTAAG
905940 GGGAGATTTT
Statistics
Matches: 255, Mismatches: 30, Indels: 19
0.84 0.10 0.06
Matches are distributed among these distances:
338 20 0.08
339 15 0.06
340 7 0.03
341 83 0.33
342 6 0.02
343 41 0.16
344 83 0.33
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (340 bp):
ATTATATGAAACGAATACTGTAAAGAAGAGGCATTTGTAGTCAAACTGTTAGGATAAATTCCTTA
CAAGCAATAAACCCGAGTTTAATTCCAGCAAAAGAAATCACGATTACAAAAAATTAAGGGGAAAT
TTTGAAAAATAAAACAAATAGATATATACCTTTTATGCTTGATAAAATGAAACAAATAGTGTAAA
AAGGAGTTTTTAGTCCAACGGTTAGGATGATTGCCTTCCAAGAAATAAACTCCAGTTCGACTTCC
TGCAAATGCAATTACAATAATAAAATATTAAGTGGAAAATTTGGAAAAGTAAGACGATTAACGTA
AATCTTTTATTCTTA
Found at i:906660 original size:172 final size:170
Alignment explanation
Indices: 906397--906962 Score: 546
Period size: 172 Copynumber: 3.3 Consensus size: 170
906387 TTCGTGCTCA
* * * * * * *
906397 ATTATGTGAAAGGAATAGTGTTAATAAGAGGTGATTGTACTCCAACGGTTAGGATAATTACCTTC
1 ATTATGTGAAA-GAATAATGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTATGATAATTACCTTC
* * * *
906462 CAAGCATTAG-CCCAAGGTTTGACTCCCAACAAATGCAACTACGATAGTAAAAAATTAAGGGGAA
65 CAAGCAATAGACTC-AGGTTCGACTCCCAACAAATGCAATTACGATAGTAAAAAATTAAGGGGAA
* * *
906526 ATTTTTAAAAAGTAAAAACAGTGGTGTATACATGTTTTTCTTG
129 ATTTTT-AAAAGTAAAAACAGTAGTGTATACGTGTTATTCTTG
* * *
906569 ATTATGTAAAATGAATAATGTAAAGAAGAGGCGTTTGTAGTCCAACGATTATGATAATTTCCTTC
1 ATTATGTGAAA-GAATAATGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTATGATAATTACCTTC
** ** *
906634 CAAGCAATAGACTCAGGTTCGACTCCCGGCAAACACAGTTACGATAGTAAAAAATTAAGGGGAAA
65 CAAGCAATAGACTCAGGTTCGACTCCCAACAAATGCAATTACGATAGTAAAAAATTAAGGGG-AA
* **
906699 ATTTTTAACAGTAAAATGAGTAGTGTATACGTGTTATTCTTG
129 ATTTTTAAAAGTAAAAACAGTAGTGTATACGTGTTATTCTTG
* * * * * ** * *
906741 ATTATGTGAAACAA-ATATCTTAAAGGATATGTATTTGAAGTCCAACGGTT-TGGATAATTGCCT
1 ATTATGTGAAAGAATA-AT-GTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAT-GATAATTACCT
* ** * ** * * ** * *
906804 TTCTTGCAATGGACTCAGGTTCGACTCTTAATAAATGTAATTAAAATATTAAAAAATTAAGAGGA
63 TCCAAGCAATAGACTCAGGTTCGACTCCCAACAAATGCAATTACGATAGTAAAAAATTAAGGGGA
* * *
906869 AATTTTGAAACGT-AAAACGAGTAGTGTATACGTGTTGTTCTTG
128 AATTTTTAAAAGTAAAAAC-AGTAGTGTATACGTGTTATTCTTG
* *
906912 ATTATGTGAAAGAAATAGTGTGAAAGAAGGGGCGTTTGTAGTCCAACGGTT
1 ATTATGTGAAAG-AATAATGT-AAAGAAGAGGCGTTTGTAGTCCAACGGTT
906963 GGGGAAAGTT
Statistics
Matches: 315, Mismatches: 70, Indels: 18
0.78 0.17 0.04
Matches are distributed among these distances:
170 4 0.01
171 51 0.16
172 249 0.79
173 11 0.03
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (170 bp):
ATTATGTGAAAGAATAATGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTATGATAATTACCTTCC
AAGCAATAGACTCAGGTTCGACTCCCAACAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAT
TTTTAAAAGTAAAAACAGTAGTGTATACGTGTTATTCTTG
Found at i:907053 original size:97 final size:99
Alignment explanation
Indices: 906866--907056 Score: 230
Period size: 97 Copynumber: 1.9 Consensus size: 99
906856 AAAATTAAGA
* * * * * *
906866 GGAAATTTTGAAACGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAAGAAATAGT
1 GGAAATTTTAAAAAGTAAAACGAATAGTATATACATGTTGTTCTTGATTATGTGAAAGAAATAGA
* * *
906931 GTGAAAGAAGGGGCGTTTGTAGTCCAACGGTTGG
66 GTGAAAGAAGAGGCATTCGTAGTCCAACGGTTGG
*
906965 GGAAAGTTTTAAAAAGTAAAAACGAATAGTATATACATGTT-TT-TT-ATTATGTGAACCG-AAT
1 GGAAA-TTTTAAAAAGT-AAAACGAATAGTATATACATGTTGTTCTTGATTATGTGAA-AGAAAT
907026 AGAGT-AAAGAAGAGGCATTCGTAGTCCAACG
63 AGAGTGAAAGAAGAGGCATTCGTAGTCCAACG
907057 ATTAATGATA
Statistics
Matches: 79, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
97 23 0.29
98 17 0.22
99 8 0.10
100 11 0.14
101 20 0.25
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.29
Consensus pattern (99 bp):
GGAAATTTTAAAAAGTAAAACGAATAGTATATACATGTTGTTCTTGATTATGTGAAAGAAATAGA
GTGAAAGAAGAGGCATTCGTAGTCCAACGGTTGG
Found at i:907721 original size:169 final size:171
Alignment explanation
Indices: 907010--908446 Score: 816
Period size: 171 Copynumber: 8.3 Consensus size: 171
907000 CATGTTTTTT
* * * * * * *
907010 ATTATGTGAACCGAATAGAGTAAAGAAGAGGCATTCGTAGTCCAAC-GATTAATGATAATTTCCT
1 ATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACAG-TT-AGGATAATTACCT
* ** * * * *
907074 TCCAAGCTATAGACCCAGGTT-GAACTCCCAGCAAACACAATTACGATAGTAAAAAATTATGGAG
64 TCCAAGCAATAGACCCAAATTCG-ACTCCCGGCAAAAACAATTACGATAGTAAAAAATTAAGGGG
* * *
907138 AAAATTTTGAAAAGTAAAATAAGTAGTGAGTAGTGTATATGTGTTGTTCTTG
128 AAAATTTTG-AAAGTAAAACAAGTAGT--GTA---TA-CT-TCTTGTTCTTG
* * * * * * **
907190 ATTATATGAAACAAATAGTTTAAAGAAGAGGCATTTTTAGTCCAACGGTTTGGATAATCGCCTTC
1 ATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACAGTTAGGATAATTACCTTC
* * **** * * * *** * * * * *
907255 CATGCAATGGACCTGGGTTTGACTCTCGGTAAATGTAATTATGCTATTAAAAAATTATGGGG-GA
66 CAAGCAATAGACCCAAATTCGACTCCCGGCAAAAACAATTACGATAGTAAAAAATTAAGGGGAAA
* * *
907319 ATTTTGAAAAGCAAAACAAATAGTGTATACCTTTCATG--CTTG
131 ATTTTG-AAAGTAAAACAAGTAGTGTATA-C-TTCTTGTTCTTG
* ** *
907361 ATTATGTGAAACAAATAGTGTAAATAAGAGGTTTTTGTAGTCCAACGGTTAGGATAATTACCTTC
1 ATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACAGTTAGGATAATTACCTTC
**** * * **
907426 CAAGCAATAGACCTGGGTTCGACTCCTGGCTAATGCAATTACGATAGTAAAAAATTAAGGGGAAA
66 CAAGCAATAGACCCAAATTCGACTCCCGGCAAAAACAATTACGATAGTAAAAAATTAAGGGGAAA
*
907491 ATTTTGTAAAGTAAAACAAGTGGTGTATACTTCTTGTTCTTG
131 ATTTTG-AAAGTAAAACAAGTAGTGTATACTTCTTGTTCTTG
** * * * **
907533 ATTATGTGAAATGAATAGTGTAAAGAAGATGCGTTTGTAATCCAACAATTAGGATAATT-TTTTC
1 ATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACAGTTAGGATAATTACCTTC
* * * * *
907597 CAAGCAATAGACCCAAATTCTACTCCCGGCAAAAACAATTAGGATATTATAAAATTAA-TGGAAA
66 CAAGCAATAGACCCAAATTCGACTCCCGGCAAAAACAATTACGATAGTAAAAAATTAAGGGGAAA
* *
907661 TATTTTG-AAGTAAAACGA-TAAGTGTATA-TGTGTTGTTCTTG
131 -ATTTTGAAAGTAAAACAAGT-AGTGTATACT-TCTTGTTCTTG
* *
907702 ATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTACAACCGTTAGGATAATTACCTTC
1 ATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACAGTTAGGATAATTACCTTC
* * * *** * ** * * ** *
907767 CAATCAGTTAG-CTCGGGTTCAACTAACAG-AAAATACTATTTTGATATTAAAAAATTAAGGGG-
66 CAAGCA-ATAGACCCAAATTCGACTCCCGGCAAAA-ACAATTACGATAGTAAAAAATTAAGGGGA
* * * * *
907829 AAATTTTAAAAGTAAAACGAA-TAATGTATATCTT-TCGTGCTTT
129 AAATTTTGAAAGTAAAAC-AAGTAGTGTATA-CTTCTTGTTCTTG
* * ** * * * * **
907872 ATTATATAAAATGAATTGTGTAAAGAAAAGGCGTTAGTAGTCTAATGGTTAGGATAATTACCTTC
1 ATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACAGTTAGGATAATTACCTTC
*** * ** *** * * * *
907937 CAAGCAATAGACCCGTGTTCGACTCACAACAAACGTAATTACTATAGTGAAGAATTAATGGGAAA
66 CAAGCAATAGACCCAAATTCGACTCCCGGCAAAAACAATTACGATAGTAAAAAATTAAGGGGAAA
* * ** ** *
908002 TTTTTTAAAAGTAAAATGAGTAGTGTATAGGTGTTGTTCTTG
131 -ATTTTGAAAGTAAAACAAGTAGTGTATACTTCTTGTTCTTG
* * * *
908044 ATTATGTGAAACAAATAGTGTATAGAAGAGGCGTTTGTAGTCCAACCGTTAGGATAATTGCCTGC
1 ATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACAGTTAGGATAATTACCTTC
* * * ***** ** * *
908109 CAAGCAGTTGTCTTGGGTTCGACTCGTGG-AAAATGA-AATTTCGATAGTAAAAAATTAAGTGGA
66 CAAGCAATAGACCCAAATTCGACTCCCGGCAAAA--ACAATTACGATAGTAAAAAATTAAGGGGA
* * * * *
908172 AAATTTTGAAAAGTAAAATGAA-TAAT-TTTACCTT-TTGTGCTTC
129 AAATTTTG-AAAGTAAAA-CAAGTAGTGTATA-CTTCTTGTTCTTG
* * * * ** *
908215 ATTATGTGAAAACTAA-ACTGTAAAGAAGAGGTGTTTGTAGTCCTATTGTTAGGATAATTGCCTT
1 ATTATGTG-AAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACAGTTAGGATAATTACCTT
* * *** * * * * * * *
908279 CCAAGAAATAGACTCGGGTTTGAATCTCGCCAAATGA-AATTACGATTGTAAAAAATTAAGTGGA
65 CCAAGCAATAGACCCAAATTCGACTCCCGGCAAA-AACAATTACGATAGTAAAAAATTAAGGGGA
* * *
908343 AAATTTTGAAAAAATAAAGAAAACAA-TATGTATATACCTT-TTGTGCTTG
129 AAATTTTG--AAAGT----AAAACAAGTA-GTGTATA-CTTCTTGTTCTTG
* * * * **
908392 GTTATATGAAACAAATAGTGTAAAGAATAGGCGTTTGTAGACCAATGGTTAGGAT
1 ATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACAGTTAGGAT
908447 GATTGCCTCC
Statistics
Matches: 986, Mismatches: 232, Indels: 81
0.76 0.18 0.06
Matches are distributed among these distances:
168 2 0.00
169 91 0.09
170 162 0.16
171 301 0.31
172 230 0.23
173 6 0.01
174 1 0.00
175 4 0.00
176 14 0.01
177 54 0.05
178 22 0.02
179 56 0.06
180 42 0.04
181 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (171 bp):
ATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACAGTTAGGATAATTACCTTC
CAAGCAATAGACCCAAATTCGACTCCCGGCAAAAACAATTACGATAGTAAAAAATTAAGGGGAAA
ATTTTGAAAGTAAAACAAGTAGTGTATACTTCTTGTTCTTG
Found at i:908048 original size:511 final size:520
Alignment explanation
Indices: 907010--908114 Score: 1241
Period size: 511 Copynumber: 2.1 Consensus size: 520
907000 CATGTTTTTT
* * * * * *
907010 ATTATGTGAACCGAATAGAGTAAAGAAGAGGCATTCGTAGTCCAACGATTAATGATAATTTCCTT
1 ATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACAATT-AGGATAATTTCCTT
* ** * *
907075 CCAAGCTATAGACCCAGGTTGAACTCCCAGCAAACACAATTACGATAGTAAAAAATTATGGAGAA
65 CCAAGCAATAGACCCAAATTCAACTCCCAGCAAAAACAATTACGATAGTAAAAAATTATGGAGAA
907140 AATTTTGAAAAGTAAAATAAGTAGTGAGTAGTGTATATGTGTTGTTCTTGATTATATGAAACAAA
130 AATTTTG-AAAGTAAAATAAGTAGTGAG-AGTGTATATGTGTTGTTCTTGATTATATGAAACAAA
* * * * * *
907205 TAGTTTAAAGAAGAGGCATTTTTAGTCCAACGGTTTGGATAATCGCCTTCCATGCAATGGACCTG
193 TAGTGTAAAGAAGAGGCATTTGTAGTACAACCGTTAGGATAATCACCTTCCATGCAATGGACCTG
** ** * * * * * *
907270 GGTTTGACTCTCGGTAAATGTAATTATGCTATTAAAAAATTATGGGGGAATTTTGAAAAGCAAAA
258 GGTTCAACTAACAGAAAATCTAATTATGATATTAAAAAATTAAGGGGAAATTTTGAAAAGCAAAA
* * * * * ** *
907335 CAAATAGTGTATACCTTTCATGCTTGATTATGTGAAACAAATAGTGTAAATAAGAGGTTTTTGTA
323 CAAATAATGTATACCTTTCATGCTTGATTATATAAAACAAATAGTGTAAAGAAAAGGCGTTAGTA
* ** * *
907400 GTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGACCTGGGTTCGACTCCTGGCTAATGCAAT
388 GTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTCGACTCCTAACAAACGCAAT
* *
907465 TACGATAGTAAAAAATTAAGGGGAAAATTTTGTAAAGTAAAACAAGTGGTGTATACTTCTTGTTC
453 TACGATAGTAAAAAATTAAGGGGAAAATTTTGTAAAGTAAAACAAGTAGTGTATACGTCTTGTTC
907530 TTG
518 TTG
* * * *
907533 ATTATGTGAAATGAATAGTGTAAAGAAGATGCGTTTGTAATCCAACAATTAGGATAATTT-TTTC
1 ATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACAATTAGGATAATTTCCTTC
* * * * *
907597 CAAGCAATAGACCCAAATTCTACTCCCGGCAAAAACAATTAGGATATTATAAAATTAATGGA-AA
66 CAAGCAATAGACCCAAATTCAACTCCCAGCAAAAACAATTACGATAGTAAAAAATT-ATGGAGAA
* * *
907661 TATTTTG-AAGT-AAA-ACG-A-T-A-AGTGTATATGTGTTGTTCTTGATTATGTGAAACAAATA
130 AATTTTGAAAGTAAAATAAGTAGTGAGAGTGTATATGTGTTGTTCTTGATTATATGAAACAAATA
* * * * *
907719 GTGTAAAGAAGAGGCGTTTGTAGTACAACCGTTAGGATAATTACCTTCCAAT-CAGT-TAGCTCG
195 GTGTAAAGAAGAGGCATTTGTAGTACAACCGTTAGGATAATCACCTTCC-ATGCAATGGACCT-G
* *
907782 GGTTCAACTAACAGAAAATACT-ATTTTGATATTAAAAAATTAAGGGGAAATTTT-AAAAGTAAA
258 GGTTCAACTAACAGAAAAT-CTAATTATGATATTAAAAAATTAAGGGGAAATTTTGAAAAGCAAA
* * * * ** *
907845 ACGAATAATGTATATCTTTCGTGCTTTATTATATAAAATGAATTGTGTAAAGAAAAGGCGTTAGT
322 ACAAATAATGTATACCTTTCATGCTTGATTATATAAAACAAATAGTGTAAAGAAAAGGCGTTAGT
* * * *
907910 AGTCTAATGGTTAGGATAATTACCTTCCAAGCAATAGACCCGTGTTCGACTCAC-AACAAACGTA
387 AGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTCGACTC-CTAACAAACGCA
* * * * * ** * *
907974 ATTACTATAGTGAAGAATTAATGGG-AAATTTTTTAAAAGTAAAATGAGTAGTGTATAGGTGTTG
451 ATTACGATAGTAAAAAATTAAGGGGAAAATTTTGT-AAAGTAAAACAAGTAGTGTATACGTCTTG
908038 TTCTTG
515 TTCTTG
* * ** * *
908044 ATTATGTGAAACAAATAGTGTATAGAAGAGGCGTTTGTAGTCCAACCGTTAGGATAATTGCCTGC
1 ATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACAATTAGGATAATTTCCTTC
908109 CAAGCA
66 CAAGCA
908115 GTTGTCTTGG
Statistics
Matches: 484, Mismatches: 91, Indels: 25
0.81 0.15 0.04
Matches are distributed among these distances:
510 8 0.02
511 216 0.45
512 132 0.27
513 3 0.01
514 1 0.00
515 1 0.00
516 1 0.00
517 2 0.00
518 3 0.01
519 4 0.01
521 57 0.12
522 14 0.03
523 42 0.09
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (520 bp):
ATTATGTGAAACGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACAATTAGGATAATTTCCTTC
CAAGCAATAGACCCAAATTCAACTCCCAGCAAAAACAATTACGATAGTAAAAAATTATGGAGAAA
ATTTTGAAAGTAAAATAAGTAGTGAGAGTGTATATGTGTTGTTCTTGATTATATGAAACAAATAG
TGTAAAGAAGAGGCATTTGTAGTACAACCGTTAGGATAATCACCTTCCATGCAATGGACCTGGGT
TCAACTAACAGAAAATCTAATTATGATATTAAAAAATTAAGGGGAAATTTTGAAAAGCAAAACAA
ATAATGTATACCTTTCATGCTTGATTATATAAAACAAATAGTGTAAAGAAAAGGCGTTAGTAGTC
CAACGGTTAGGATAATTACCTTCCAAGCAATAGACCCGGGTTCGACTCCTAACAAACGCAATTAC
GATAGTAAAAAATTAAGGGGAAAATTTTGTAAAGTAAAACAAGTAGTGTATACGTCTTGTTCTTG
Found at i:908860 original size:170 final size:172
Alignment explanation
Indices: 908494--908868 Score: 407
Period size: 172 Copynumber: 2.2 Consensus size: 172
908484 GTTATACCTT
* * * * *
908494 TTGTGCTTGATTATGTGAAACGAATATTGTAAAGAAGAGACGCTTGTAGTCCAACTGCTAGGATA
1 TTGTGCTAGATTATGTGAAACAAATAATGTAAAAAAGAGACGCTTGTAGTCCAACAGCTAGGATA
* * * * * * * **
908559 ATTGCCTTGCAAGCAATAGGCACGGGTTTAACTTCTGGCAAATGCAATTACGATTGTAAAAAGTT
66 ATTGCATTGCAAGCAATAGACACGGGTTCAACTGCCGGCAAATGCAATTACAATAGTAAAAAAAT
* * *
908624 ATGGGGAAATTTTTGGAAAGTAAAACAAATAGTATATAACTT
131 ATAGGGAAATTTTTGAAAAGTAAAACAAATAGTATATAACTC
* * * * * *
908666 TTGTGCTTGATTATGTGAAACAAATAATGTAAAAAAGAGGCGCTTTTAGTTCAACAGTTAGGATG
1 TTGTGCTAGATTATGTGAAACAAATAATGTAAAAAAGAGACGCTTGTAGTCCAACAGCTAGGATA
* * *
908731 ATTGCATTTCAAGCAATAGAC-CTGGGTTCGACTGCCGGTAAATG-AATTACAATAGTAAAAAAA
66 ATTGCATTGCAAGCAATAGACAC-GGGTTCAACTGCCGGCAAATGCAATTACAATAGTAAAAAAA
* ** * *
908794 TA-AGGGAAATTTTTGAAAAGTGAAATGAGTAGTGTATACAC-C
130 TATAGGGAAATTTTTGAAAAGTAAAACAAATAGTATATA-ACTC
* *
908836 TTGTTCTAGATTATGTGAAACAAATAGTGTAAA
1 TTGTGCTAGATTATGTGAAACAAATAATGTAAA
908869 GACTAGTATA
Statistics
Matches: 169, Mismatches: 32, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
170 59 0.35
171 20 0.12
172 90 0.53
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (172 bp):
TTGTGCTAGATTATGTGAAACAAATAATGTAAAAAAGAGACGCTTGTAGTCCAACAGCTAGGATA
ATTGCATTGCAAGCAATAGACACGGGTTCAACTGCCGGCAAATGCAATTACAATAGTAAAAAAAT
ATAGGGAAATTTTTGAAAAGTAAAACAAATAGTATATAACTC
Found at i:908881 original size:49 final size:49
Alignment explanation
Indices: 908823--908920 Score: 135
Period size: 49 Copynumber: 2.0 Consensus size: 49
908813 GTGAAATGAG
*
908823 TAGTGTATACACCTTGTTCTAGATTATGT-GAAACAAATAGTGTAAAGAC
1 TAGTATATACACCTTGTTCTAGATTATGTCG-AACAAATAGTGTAAAGAC
*** *
908872 TAGTATATACGTGTTGTTCTTGATTATGTCGAACAAATAGTGTAAAGAC
1 TAGTATATACACCTTGTTCTAGATTATGTCGAACAAATAGTGTAAAGAC
908921 CTGGGTTCGA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
49 42 0.98
50 1 0.02
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (49 bp):
TAGTATATACACCTTGTTCTAGATTATGTCGAACAAATAGTGTAAAGAC
Found at i:909684 original size:158 final size:158
Alignment explanation
Indices: 909396--909713 Score: 397
Period size: 158 Copynumber: 2.0 Consensus size: 158
909386 GAATAGTGTA
* * * * *
909396 AATAATAGGTATTTGTCGTCCAACGGTTAGGCTAATTACCTTTCAAGCAATAGACTCGGGTTCGA
1 AATAAGAGGTATTTGTAGTCCAACGGTTAGGATAAATACCTTCCAAGCAATAGACTCGGGTTCGA
* * * ** * * * *
909461 CTCCCGGTAAATGAATTACGATTGTAAAAAAAGTAAGGGGAAAATTTTGAAAAGTATAACGAGTA
66 CTCCCAGCAAACGAAAGACAATAGTAAAAAAAGTAAGGGGAAAATTTTAAAAAGTAAAACGAGTA
* *
909526 GTGTATATGCGTTGTCCTTGATTATGTG
131 GTGTATACGCGTTGTCATTGATTATGTG
* * *
909554 AATAAGAGGTGTTTGTAGTCCAACGGTTAGGATAAATGCCTTCCAAGTAATAGAC-CTGGGTTCG
1 AATAAGAGGTATTTGTAGTCCAACGGTTAGGATAAATACCTTCCAAGCAATAGACTC-GGGTTCG
* *
909618 ACTCCCAGCAAACGCAAAGACAATAGT-AAAAAATTGAGGGGAAAATTTTAAAAAGTAAAACGAG
65 ACTCCCAGCAAACG-AAAGACAATAGTAAAAAAAGTAAGGGGAAAATTTTAAAAAGTAAAACGAG
* *
909682 TAGTGTATACGTGTTGTTATTGATTATGTG
129 TAGTGTATACGCGTTGTCATTGATTATGTG
909712 AA
1 AA
909714 ACAAATGCTG
Statistics
Matches: 135, Mismatches: 23, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
157 1 0.01
158 126 0.93
159 8 0.06
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (158 bp):
AATAAGAGGTATTTGTAGTCCAACGGTTAGGATAAATACCTTCCAAGCAATAGACTCGGGTTCGA
CTCCCAGCAAACGAAAGACAATAGTAAAAAAAGTAAGGGGAAAATTTTAAAAAGTAAAACGAGTA
GTGTATACGCGTTGTCATTGATTATGTG
Found at i:910343 original size:346 final size:343
Alignment explanation
Indices: 909554--916829 Score: 3632
Period size: 346 Copynumber: 21.0 Consensus size: 343
909544 TGATTATGTG
** * *
909554 AATAAGAGGTGTTTGTAGTCCAACGGTTAGGATAAATGCCTTCCAAGTAATAGAC-CTGGGTTCG
1 AATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTC-GGGTTCG
* ** * * *
909618 ACTCCCAGCAAACGCAAAGACAATAGTAAAAAATTGAGGGGAAAATTTTAAAAAGTAAAACGAGT
65 ACTCCCGGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGT
* *
909683 AGTGTATACGTGTTGTTA-TTGATTATGTGAAACAAAT-GCTGTAAAGACGAGGTATTTGTAGTC
130 AGTGTATACGTGTTG-TACTTGATTATGTGAAACAAATAG-TGTAAAGAAGAGGTGTTTGTAGTC
** * * * * * *
909746 CAACGATTAGGATAATTGCCTTTTAATCAATATACTCGGGTTCGATTCCCAACAAACGCAATTAG
193 CAACGATTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCGAA-AAACGCAATTAC
* * * *
909811 GATTATAAAAAATTAAGGGGAAAATGTTGAAAAGTTAAAACGATTAGTGTATACGTGTTGTTCTT
257 GATTGTAAAAAATTAAGGGGAAAATTTTGAAAAG-TAAAACGAGTAGTGTATATGTGTTGTTCTT
* *
909876 GTTTATGTGAAACAAATAACT-TA
321 GATTATGTGAAACAAAT-AGTGTA
* * * *** * * * * ***
909899 AATAAAAGGCATTTTTAGTCCTATAATTAGGACAATTTCCTT-CAAGGCAAAAAACTATAGTTCG
1 AATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAA-GCAATAGACTCGGGTTCG
* * * * *
909963 ACTCCCGGTAAACACAATTACAATTGTAAAAAAATTAAGGGGGAAATGTTT-AAAAGTAAAACGA
65 ACTCCCGGCAAACGCAATTACGATAGT-AAAAAATTAAGGGGAAAAT-TTTGAAAAGTAAAACGA
* * * * * * * *
910027 ATAGTGTATACATGTTATACGTGATTATGTGAAACAAATAGTTTTAAGAAGAGGCGTTTGTACTC
128 GTAGTGTATACGTGTTGTACTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGTGTTTGTAGTC
* * ** * *
910092 CAACGGTTAGGATAATTGCCTTCTAAGCAATAGAATCAGGTTCGACTCCGGAAAAACACAATTAC
193 CAACGATTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCC-GAAAAACGCAATTAC
*
910157 GATTGTAAAAAATTAAGGGGAAAATTTTTAAAAGTAAAACGAGTAGTAGTATATAGTTGTTGTTC
257 GATTGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGT-GTATAT-G-TGTTGTTC
*
910222 GTGATTATGTGAAACAAATAGTGTA
319 TTGATTATGTGAAACAAATAGTGTA
* * ** * * *
910247 AACAAAAGGCATTTGTAGTCCAACACTTAAGATAATTGCCTTACAAGCAATAGACTCGAGTTCGA
1 AATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGA
* * * ** * * *
910312 CTCCCGTCAAATG-AATTACGTTAGTAAAAAATTAAAAGGAAATTTTTTAAAAGTAAAACGAGTT
66 CTCCCGGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTA
* * * *
910376 GTGTATACGTGTTTTTA-TTCATTAAGTGAAACAAATAGTGTCAATAAGAGAGAGGCGTTTGTAG
131 GTGTATACGTG-TTGTACTTGATTATGTGAAACAAATAGTGT--A-AAGA-AGAGGTGTTTGTAG
* ** * * * * * * *
910440 TCCAACGGTTAGGATAATTGCCTTCCAAGTGATCGACCCAGGTTTGACACCCGACAAACACAATC
191 TCCAACGATTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGAC-TCCGAAAAACGCAATT
* * * * ** * **
910505 ACGATCGTAAAAAATT-AGGGGGAGATTTTAAAAAGTAAAACGAGTAGTGTATACATGATGTAAT
255 ACGATTGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCT
* *
910569 TGCTTACGTGAAACAAATAGTGTA
320 TGATTATGTGAAACAAATAGTGTA
* * ** * * * * *
910593 AATATGATGCATTCATAGTCCTACAGTTAGGATAATTTCCTTCCAATCAATAGACTCAGGTTCGA
1 AATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGA
* * * *
910658 CTCCCAGAAAACGTAATTACGATAGTAAAAAATTAAGGGGAAAATGTTGAAAAGTAAAAC-AGTA
66 CTCCCGGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTA
* * * *
910722 GTGTATACATGTTGTTATTTTGATTATGTGAAACAAATAGTGTAAAGAAGA-G-G--TATATTCC
131 GTGTATACGTGTTG-TA-CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGTGTTTGTAGTCC
* * * * *
910783 AACGATTAGGATAATTGACTTCCAAGTAATAGACCCGGGTTGGACTCCCGACAAATGCAATTACG
194 AACGATTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACT-CCGAAAAACGCAATTACG
* * * * * *
910848 ATAGTAGTACAAATTTAAGGGGAAAATTTTGAAAAGTAAAACAAG-ATGTGTACATGTTTTGTTA
258 AT--T-GTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTA-GTGTATATGTGTTGTTC
*
910912 TTGATTATGTGAAACAAATAGCGTA
319 TTGATTATGTGAAACAAATAGTGTA
* * ** * ** *** * * * *
910937 AAGAGGAGGTGTTTTTCTTCCAACCACTAGGAT-ATTGCCTTCCAGGCAAGAAACCCGGGTTCGA
1 AATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGA
**** ** * * * * **
911001 CGGGTGAAAAAGGCAATTTCGATAGTAAAAAAATAAGGGGAAAATTTTGAAAAGTAAAACAAACA
66 CTCCCGGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTA
* * * * ** * *
911066 GTGTTTACCTTTTGTTCTTGATTACATGAAACAAATAGTGTAAAGAATAGGTATTTGTAGTCCAA
131 GTGTATACGTGTTGTACTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAA
* * * * * *
911131 CGGTTAGGCTAA-TGACCATT-CAAGCAATAGACCCGGGTTCAACTACAGGAAAATG-AATTACG
196 CGATTAGGATAATTG-CC-TTCCAAGCAATAGACCCGGGTTCGACT-CCGAAAAACGCAATTACG
* * *** * *
911193 ATTTTATAAAATTAAGGGGAAAATTTTGAAAAGTAAATTTAGTAACATATATATGTGTTGTTCTT
258 ATTGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGT-A-GTGTATATGTGTTGTTCTT
* * *
911258 GATTAT-TTAAA-AAATTGTGTG
321 GATTATGTGAAACAAATAGTGTA
* * * ** *
911279 AATAAGAGGCGTTTGTAATCCAACGGTTAGGATAATTACCTTTTAAGCAATAGACCCGGGTTCGA
1 AATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGA
* * * *** * *
911344 CTCTCGGCAAACGCAATGACAATAGTAAAAAATTAAGCAAAAAACTTTAAAAAGTAAAACGAGTA
66 CTCCCGGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTA
*
911409 GTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTGTAAA-AATGAGGTGTTTGTAGTC
131 GTGTATACGTGTTGTACTTGATTATGTGAAACAAATA--GTGTAAAGAA-GAGGTGTTTGTAGTC
* * * * * *
911473 CAACAATTAGGATAATTGCCTTCCGATCAATATACCCGGGTTCGACTCCCGACAAACACAATTAC
193 CAACGATTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACT-CCGAAAAACGCAATTAC
* * * * * *
911538 GATGGTAAAAACTTAAGGGGGAAATGTTT-AAAAGTAAAACGAGTAGTGTGTACGTGTTATT-TG
257 GATTGTAAAAAATTAAGGGGAAAAT-TTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCT-
* *
911601 TGATTATGTAAAACAAATAGTTTA
320 TGATTATGTGAAACAAATAGTGTA
* ** * * *
911625 AAGAAGAGGCGCTTATAGTCCAACGGTTAGGATAATTGCCTTCTAAGCAATAGTCTCGGGTTCGA
1 AATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGA
* * * * * * *
911690 C-CCTGGGAAAACGCAATTGCAATAGTAAAAAATCAA--GGAAATTTTTTGAAAAGTAATACGAG
66 CTCC-CGGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAA-ATTTTGAAAAGTAAAACGAG
* * *
911752 TAGTGTATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGTGTTTGTTGTCC
129 TAGTGTATACGTGTTGTACTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGTGTTTGTAGTCC
* * * ** * *
911817 AACAATTAGGATAATTGCCTTCCAAGCAATAGAACTGGGTTCGACTCTCGTTAAATG-AATTAAG
194 AACGATTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTC-CGAAAAACGCAATTACG
* ** * * * *
911881 -TTAATAAAAAATTAAAAGGAAATTTTTAAAAAGTAAAACGAGTAGTGTATATGTGTTTTTCTTT
258 ATT-GTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCTTG
**
911945 ATTATAAGAAACAAATAGTGTA
322 ATTATGTGAAACAAATAGTGTA
* * * * *
911967 AATAAGAGGAATTTGTAGTCCAAGGGTTAGGATAATTGCCTTTCAAGCGATAGACTTGGGTTCGA
1 AATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGA
* *** * ** * * *
912032 CTCCAGATGAACACAATCGCGATCGTAAAAAATTAAGGGGAAAAATTTAAAAAGTAAAACGAGTA
66 CTCCCGGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTA
* * ** * * * * *
912097 GTGTATTACATGTTGGT-TTTGATTACCTGAAAAAAAATAGTGTAAAGATGACGCGTTCGTAGTC
131 GTGTA-TACGTGTT-GTACTTGATTATGTG-AAACAAATAGTGTAAAGAAGAGGTGTTTGTAGTC
* * * * * * * *
912161 CTATA-G-TTAGGATAATTTCCTCTTTCAATCAATAGACTCAGGTTCGTAGT-C---ATACGTAA
193 C-A-ACGATTAGGATAA-TTGC-CTTCCAAGCAATAGACCCGGGTTCG-ACTCCGAAAAACGCAA
* * * * * *
912220 TTACGATAGTAAGAAATTAAGGGGAAAATGTTGAAAAGTAAAATGACTATTGTATATGTGTTGTT
253 TTACGATTGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTT
* *
912285 CTTGATTAAGTAAAACAAATAGTGTA
318 CTTGATTATGTGAAACAAATAGTGTA
* *
912311 AACAA-A---ATGTGTAGTCCAACGGTTAGGATAATTGCCCTTCCAAGCAATAGACTCGGGTTCG
1 AATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTG-CCTTCCAAGCAATAGACTCGGGTTCG
* * * * * *
912372 ACTCCCGACAAACACGATTATG-CAGT-AAAAATTCAAGGGGAAAATTTTGAAAAGTAAAACAAG
65 ACTCCCGGCAAACGCAATTACGATAGTAAAAAATT-AAGGGGAAAATTTTGAAAAGTAAAACGAG
* * * * ** **
912435 TAGTGTATAGGTTTTGTTA-TTGATTATGTGGAACAAAAAGCATAAAGAAGAGGTGTTTGTCTTC
129 TAGTGTATACGTGTTG-TACTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGTGTTTGTAGTC
* * * * * * * ** * *
912499 CAACCACTAGGACAATTGCCTTCTAGGCAATAAACAC-GGTTCGACAGGCGAAAAAGGCAATTTC
193 CAACGATTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGAC-TCCGAAAAACGCAATTAC
* * ** * ** *
912563 GATAGTAAAAAATTAAGGGG-AAATTTTGAAAAGTAAAACAAACAGT-TTTACCTTTTGTGT-TT
257 GATTGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGT-TCTT
912625 GATTATGTGAAACAAATAGTGTA
321 GATTATGTGAAACAAATAGTGTA
* * * * * * * * *
912648 AACAATAGGTATTTTTAGTCCAACGGTTAGGCTAATTACCTTCCAAGCAAAATACTCGGGTTTGA
1 AATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGA
* * * * * * **
912713 CTTCCGGCAAATG-AATTACGATTGCAAAAAATTAAGGGGATAATTTTGAAAAGTAGATTGAGTA
66 CTCCCGGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTA
* * * * * * * *
912777 GTGTACACGTGTTGTTCTCGATTATGTAAAAGAAATAGTATGAATAAGAGTAGTGTACAGGTT-T
131 GTGTATACGTGTTGTACTTGATTATGTGAAACAAATAGTGTAAAGAAGAG--GTGT-----TTGT
* * ** * **** ** * *** * * **
912841 TGTTC-TTGACTATGTGA-AA-CAAATAGC--GTAA-AGAGGAGGTGTTTGTCTTCCGATCACTA
189 AGTCCAACGATTA-G-GATAATTGCCTTCCAAGCAATAGACCCGG-GTTCGAC-TCCGA--AAAA
* * * ** * * *
912900 GGATAATTGCCTTCTAGTCAATAAACCCGGGTTCGATAGGCGAAAAAGGCAATTTTG-ATAGT-A
248 CG-CAATTACGAT-T-GT-AA-AAA-----ATT--A-AGG-G--GAA---AATTTTGAAAAGTAA
* *** * * ** * *
912963 AA--A-TA-T-TA-A-GGGAAAATT-TTGA-AAAGAAAAAAAAACAGTGTTTA
294 AACGAGTAGTGTATATGTG-TTGTTCTTGATTATGTGAAACAAATAGTG--TA
** * * * * ** * * * * ** * *
913007 CCT-TG-GGAAAATTTTTAAAATTAAAACAGATAGTG-T--TTACCTTTCGTGC--TTGATTACA
1 AATAAGAGG--CATTTGT---AGTCCAACGGTTAG-GATAATTGCCTTCCAAGCAATAGACT-C-
* *** * * * * ** * *** * ** ** **
913065 TGAAACAAAT--AGTGTAAA-G-AATAGGTATTTATAGTCCAACGGTT-ATGCTAATTACCTTCC
58 GGGTTCGACTCCCG-GCAAACGCAAT---TA-CGATAGT-AAAAAATTAAGGGGAA--AATTTTG
* * * ** * *** ** * * *
913125 AAGCAAATGAATTACGA--A-TGTCAAAAAT-TAAGGGGTAAATT-T-TGAAAAGTAAATTGAGT
115 AA--AAGT-AA-AACGAGTAGTGT-ATACGTGT-TGTACTTGATTATGTG-AAA-CAAATAGTGT
* * * * * * ** **
913184 AATGTATATGTGTTGTTATTGATTATGT-AAAAGAAATAGTGTGAATAAGAGGCACTT-GTAGTC
172 AAAG-A-A-GAGGTG-T-TTG--TA-GTCCAACG-ATTA--G-G-ATAA-TTGC-CTTCCAAG--
* **** * * * * * ** * ** *** *
913247 CAA-CGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTT-CGACTCACG-GCAAACGCAAT
220 CAATAGACCCGGGT--TCGAC-TCC--G-AA-AAACGC-AATTACGA-T--TGTAAAAAATTAAG
** *** * * *
913309 GACAATAGTAAAAAAGTAAGGGGAAATTTTAAAAAGTAGAACGAGTATTGTATATGTATTGTTCT
274 GGGAA-A--ATTT---T-----G--------AAAAGTAAAACGAGTAGTGTATATGTGTTGTTC-
*
913374 TGATTGATTATGTGAATCAAATAGTGTA
319 ---TTGATTATGTGAAACAAATAGTGTA
* * ** * * * *
913402 AAGACGAGGTGTTTGTAGTCCAACGGTTAGGATAATTGCCTTTCAATCGATATACTCGGGTTCGA
1 AATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGA
** * * * * * * * *
913467 CTCCCAACAAAGGTAATTATGATGGTAAAAAATTAAGGGGAAAATGTTGGAAAGTGAAACTAGTA
66 CTCCCGGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTA
* * * * * * * *
913532 GTGTATAAGTGTTGTTCTTGTTTATGTGAAAGAAATAGCT-TAAATAAGAGGCGTTTTTAGTACA
131 GTGTATACGTGTTGTACTTGATTATGTGAAACAAATAG-TGTAAAGAAGAGGTGTTTGTAGTCCA
* * * * * * * ** * *
913596 ACAATTAGGATAATTTCCTTCCAAACAAAAGACTCGAGTTCAACTCCTGGTAAACACAATTATGA
195 ACGATTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCC-GAAAAACGCAATTACGA
* * * * * *
913661 TAGTAAAAATTTAAGGCGAAAATGTTT-AAAAGTAAAACAAGTAGTGTATACGTGTTATTCGTT-
259 TTGTAAAAAATTAAGGGGAAAAT-TTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTC-TTG
913724 ATTATGTGAAACAAATAGTGTCA
322 ATTATGTGAAACAAATAGTGT-A
* * *
913747 AA-AAGAGGCATTTGTAGTCCAACGCTTAGGATAATTGCCTTCCAAGCAATAAACTCGGGTTTGA
1 AATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGA
* * * * * * ** ** *
913811 CTCACGAG-AAATGAAAATTACGTTTGTAAGAAATTAAAAGGAATTTTTTTAAAAGTAAAACGAG
66 CTCCCG-GCAAACG-CAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAG
* ** * * * * *
913875 TAGTGTATACGTGTTGTTCTTGATTACCTGAAACAAATAGTGTAAAGATGATGCGTTCGTAGTAC
129 TAGTGTATACGTGTTGTACTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGTGTTTGTAGTCC
* * * * * *
913940 TAC-AGTTAGGATAATTGCCTTTCAATCAATAGACTCGGGTTCGACTCCCAACAAACGCAATTAG
194 AACGA-TTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCGAA-AAACGCAATTAC
* * * * *
914004 GATAGTAAAAAATTAAGGGGAAAATATTGAAAAGTAAAACGAGTAATGTATACGTGTTGTTATTG
257 GATTGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCTTG
914069 ATTATGTGAAACAAATAGTGTA
322 ATTATGTGAAACAAATAGTGTA
* * * * * *
914091 AAGAAGAGG----TGTAGTCCAACGATTAGTATAATTTCCTTCCAAGAAATAGATTCGGGTTCGA
1 AATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGA
* * * * * *
914152 CTCCCGGTAAACACAATTACTATAGTTAAAGAATTAAGGGG--AGTTGTTGAAAAGTAAAATGAG
66 CTCCCGGCAAACGCAATTACGATAG-TAAAAAATTAAGGGGAAAATT-TTGAAAAGTAAAACGAG
* * * * * * *
914215 TAGTGTATACATGTTATTA-TCGGTTATGTGAAACCAAATAGTTTAAGGAAGAGGCGTTTGTAGT
129 TAGTGTATACGTGTT-GTACTTGATTATGTGAAA-CAAATAGTGTAAAGAAGAGGTGTTTGTAGT
* * * ** *
914279 CCAACGGTTAGGATAATTGCCTTCCAAGCAATAGGCCCGGGTTCAACTCCTGGCAAATGCAATTA
192 CCAACGATTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCC-GAAAAACGCAATTA
* * * * *
914344 TGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGCATAGGTGTTGTTCTT
256 CGATTGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCTT
914409 GATTATGTGAAACAAATAGTGTA
321 GATTATGTGAAACAAATAGTGTA
* * ** * * ** * *
914432 AAGAAGAGACATTTGTAGTCCAACCATTAGGATAATTGCCACTCCAAACTGTAGTCCCGGGTTCG
1 AATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCC-TTCCAAGCAATAGACTCGGGTTCG
* ** *** * * * * * *
914497 ACTCTCGAAAAATATAATTTCGATAGTAAAAAATAAAGTGGTAAATTTTGAATAGTAAAACGAAT
65 ACTCCCGGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGT
* * * * * * * * * *
914562 AGTTTTTACCAT-TTCTGCTTGATTATGTGAAACTAATACTGTAAAAAAGAGGCGTTTGTAATCC
130 AGTGTATA-CGTGTTGTACTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGTGTTTGTAGTCC
** * * * * * * *
914626 TATTG-TTAGGATAATTGTCTTGCAAGCAACAAACTCGGGTTTGAGTCCCGGCAAAAA---AATT
194 -AACGATTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACT-CC-G-AAAAACGCAATT
* * * * * * * *
914687 ATGATTGTAAAAAAATTAAGGGGAAAATTTTGAAAAATAAAACAAATAGTATATATATATATATA
255 ACGATTGT-AAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGT-TGT-
* * *
914752 TACCTTTTATGCTTGATAATATATAACAAATAGTGT-
317 T--C---T-TGATT-AT-GT-GA-AACAAATAGTGTA
* * * * * *
914788 -A-AAGAGG-AGTTTTTAGTCCAACGGTTTGGATGAGTGCCTTCCAAGCAATAGGCTCTGGTTCG
1 AATAAGAGGCA-TTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCG
** * * * * * * * ** *
914850 ACTTACTGCAAATGCGATTACAATAGTAAAATATTAAGGGGAAAATATAGAAAAGTAAAATAATT
65 ACTCCCGGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGT
* * * * * **
914915 AG-CTATACTTTTTGTTCTTGATTATGTGAAAC-AATACTGTAAAGAAGAGCCGTTTGTAGTCCA
130 AGTGTATACGTGTTGTACTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGTGTTTGTAGTCCA
* * * ** * ** * *
914978 ACTG-TTAGGATAATTGCCTTCTAAGTAATAGGCCCTAGTTTGACTTTTGGAAAACGTAATTACG
195 AC-GATTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGAC-TCCGAAAAACGCAATTACG
* * * * ** * ** *
915042 ATAGTAAAAATTTAA-GGGAAAA-ATTGAAAAGTAAAATGAAAAGTGTATATCT-TTCGCGCTTA
258 ATTGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTT-GTTCTTG
****
915104 ATTATGTGATTGGAATAGTGTA
322 ATTATGTGAAACAAATAGTGTA
* * * ** * *
915126 AAGAAGAGGCGTTTGAAGTCCAACGGTTAGGATAATAACCTTCCAAGCAATAAACCCGGGTTCGA
1 AATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGA
** * * * * *
915191 CTCCCAACAAATGCGACTACGATAGTAAAAAATTAAGGGG-AAATTTTAAAAAGTAAAAAGAGTA
66 CTCCCGGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTA
* * * * ** ** * *
915255 GTGTATACATGTTTTTCTAGATTATGCAAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAG
131 GTGTATACGTGTTGTACTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAA
* * * * * * * *
915320 CGATTATGATAATTTCCTTCCAAGCAATAGAGATCTGAGTTCGACTCCCAGCAAACACAATTACG
196 CGATTAGGATAATTGCCTTCCAAGCAAT--AGACCCGGGTTCGACTCCGA-AAAACGCAATTACG
* * * * * *
915385 ATAGTAAAAAATTAAGGGGAAAATGTTGAAAAGTAAAATGAGCAGTGTATACGTGTTGTACTTGA
258 ATTGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCTTGA
* *
915450 TTATGTGAATCAAATAGTTTA
323 TTATGTGAAACAAATAGTGTA
* * * *
915471 AAGAAGAGGCATTTGTAGTCCAACGGTTTGGATAATTGCCTTTCATA-CAATGGACTC-GGTTCG
1 AATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCA-AGCAATAGACTCGGGTTCG
* ** *** * * *
915534 ACTCTCGATAAATATAATAATTACAATATTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAATG
65 ACTCCCG-GCAA-A-CGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACG
* * * * * ** * **
915598 TGTA-TGTATACTTGTTGTTCTTGATTATGTGAAAGAAATATTGGGAATAAGAGGCATTTGTAGT
127 AGTAGTGTATACGTGTTGTACTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGTGTTTGTAGT
* * * * * *
915662 CCAATGGTTAGGATAATTGCCTTCCAAGCAATAGACCTGGGTTCGACTCCTACAATCGCAA-TA-
192 CCAACGATTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCGAAAAACGCAATTAC
* * * ** * **
915725 -A---TAAAATAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATAGTGTAAACCTTTTGTGGTT
257 GATTGTAAAA-AATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCTT
* * *
915786 GATTATGTGAAATGAAGAAAATGTA
321 GATTATGTGAAA-CAA-ATAGTGTA
* **** * * *
915811 AAGAAGATATGTTTGTAGTCCAATGGTTAGGATAATTACCTTCCAAGCAATAGAAC-CGGGTTTG
1 AATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAG-ACTCGGGTTCG
** * * * * *
915875 ACTCATGGCTAATGTAACTACGATAGTAAAAAATTAAGGGGAAATTTTTGAAAAGTAAAACGAGT
65 ACTCCCGGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGT
* * * * *
915940 AGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTTTGAAGAAGAGATGTTTGTAGTCCA
130 AGTGTATACGTGTTGTACTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGTGTTTGTAGTCCA
* * * * * * * *
916005 ATTG-TTAGGATAATTGCCTTCGAATCAATAGACTCGGGCTT-GAGTCCCAGCAAATG-AATTAC
195 A-CGATTAGGATAATTGCCTTCCAAGCAATAGACCCGGG-TTCGACTCCGA-AAAACGCAATTAC
* * *
916067 GATTGTAAAAAATTAAGGGG-AAA-TTTAAAAAGTAAAACGAATAGTGTATACGTGTTGTTCTTG
257 GATTGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCTTG
* *
916130 ATTATGTGAAAGAAATAGTGTT
322 ATTATGTGAAACAAATAGTGTA
** * *
916152 AATAAGAGGTGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCTAAGCAATAGACCCGGGTTCGA
1 AATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGA
** ** * * * *
916217 CTCATGGCAAACGC-ATTCAAAATAATAACATTAATTAAGGGTAAAATTTTAAAAAGTAAAACGA
66 CTCCCGGCAAACGCAATT-ACGATAGTAA-A-AAATTAAGGGGAAAATTTTGAAAAGTAAAACGA
* * * * * * ** ** ** * *
916281 ATAATGTAAACCTTTTGTGCTTGATTATGTGAAATGAATAAAGTAAAGAAGTTGCGTTTCTAGTC
128 GTAGTGTATACGTGTTGTACTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGTGTTTGTAGTC
* * * ** * *** *
916346 GAACGGTTAGGATAATTACCTTCCAAGCAATAGACCAAGGTTTGACTCCTGGCTAATGCAATTAC
193 CAACGATTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCC-GAAAAACGCAATTAC
* * * **
916411 GATAGTAAAAAATTAAGCGGAAATTTTTGAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTAT
257 GATTGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCT-T
*
916476 -ATTATGTGAAACGAATAGTGTA
321 GATTATGTGAAACAAATAGTGTA
* * * ** * ** ** * * * * * **
916498 AAGAATATGTGTTTCTAGTGTAACTATTAGGTTAATTTCTTTCCAAGCAATA-CCCCGGGTTTTA
1 AATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGA
*** * * *
916562 CTCCCGGCAAAAAAAATTATGACAGTAAAAAATTAAGGGAAAAATTTTGAAAAGTAAAACGAGTA
66 CTCCCGGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTA
* * * * * * * ***
916627 GTTTGTACGTGTTGTTCTTGATTGTTTGAAACAAATAGTTTAAATAAGAGCCCTTTGTAGTCCAA
131 GTGTATACGTGTTGTACTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAA
* * * * ** * * * ** * *
916692 CGGTTTGGATAATTACCTTTCTTGAAATGGACCAGGGTTCGACTCTCGGTAAATGTAATTACGAT
196 CGATTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTC-CGAAAAACGCAATTACGAT
* * * * * * * * * *
916757 AT-TAAAATATTAAGGGGAAATTTTTGAAATGTAAAATGAATAGTATTTATCTTTTGTGCTTGAT
260 -TGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCTTGAT
916821 TATGTGAAA
324 TATGTGAAA
916830 TGAATTGTGT
Statistics
Matches: 5248, Mismatches: 1349, Indels: 670
0.72 0.19 0.09
Matches are distributed among these distances:
334 1 0.00
335 6 0.00
336 14 0.00
337 53 0.01
338 130 0.02
339 107 0.02
340 521 0.10
341 457 0.09
342 260 0.05
343 688 0.13
344 414 0.08
345 755 0.14
346 785 0.15
347 148 0.03
348 142 0.03
349 66 0.01
350 91 0.02
351 73 0.01
352 34 0.01
353 69 0.01
354 30 0.01
355 2 0.00
356 3 0.00
357 26 0.00
358 13 0.00
359 18 0.00
360 16 0.00
361 3 0.00
362 18 0.00
363 6 0.00
364 12 0.00
365 13 0.00
366 28 0.01
367 16 0.00
368 10 0.00
369 11 0.00
370 7 0.00
371 3 0.00
372 5 0.00
373 2 0.00
374 3 0.00
375 9 0.00
376 3 0.00
377 5 0.00
378 10 0.00
379 9 0.00
380 2 0.00
381 11 0.00
382 5 0.00
384 6 0.00
385 3 0.00
386 3 0.00
387 5 0.00
388 4 0.00
389 21 0.00
390 10 0.00
391 9 0.00
392 15 0.00
393 9 0.00
394 15 0.00
395 10 0.00
396 9 0.00
397 16 0.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (343 bp):
AATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGA
CTCCCGGCAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTA
GTGTATACGTGTTGTACTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAA
CGATTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCGAAAAACGCAATTACGATT
GTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATATGTGTTGTTCTTGATTA
TGTGAAACAAATAGTGTA
Found at i:910724 original size:171 final size:172
Alignment explanation
Indices: 909557--916860 Score: 3328
Period size: 172 Copynumber: 42.1 Consensus size: 172
909547 TTATGTGAAT
* * *
909557 AAGAGGTGTTTGTAGTCCAACGGTTAGGATAAATGCCTTCCAAGTAATAGAC-CTGGGTTCGACT
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTC-GGGTTCGACT
* ** * * *
909621 CCCAGCAAACGCAAAGACAATAGTAAAAAATTGAGGGGAAAATTTTAAAAAGTAAAACGAGTAGT
65 CCCAGAAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGT
*
909686 GTATACGTGTTGTTATTGATTATGTGAAACAAAT-GCTGTAAAG
130 GTATACGTGTTGTTCTTGATTATGTGAAACAAATAG-TGTAAAG
* ** * ** * * *
909729 ACGAGGTATTTGTAGTCCAACGATTAGGATAATTGCCTTTTAATCAATATACTCGGGTTCGATTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * *
909794 CCA-ACAAACGCAATTAGGATTA-TAAAAAATTAAGGGGAAAATGTTGAAAAGTTAAAACGATTA
66 CCAGA-AAACGCAATTACGA-TAGTAAAAAATTAAGGGGAAAATTTTGAAAAG-TAAAACGAGTA
* * *
909857 GTGTATACGTGTTGTTCTTGTTTATGTGAAACAAATAACT-TAAAT
128 GTGTATACGTGTTGTTCTTGATTATGTGAAACAAAT-AGTGTAAAG
* * * * *** * * * * ***
909902 AAAAGGCATTTTTAGTCCTATAATTAGGACAATTTCCTT-CAAGGCAAAAAACTATAGTTCGACT
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAA-GCAATAGACTCGGGTTCGACT
* * * * * * *
909966 CCCGGTAAACACAATTACAATTGTAAAAAAATTAAGGGGGAAATGTTT-AAAAGTAAAACGAATA
65 CCCAGAAAACGCAATTACGATAGT-AAAAAATTAAGGGGAAAAT-TTTGAAAAGTAAAACGAGTA
* * * * * *
910030 GTGTATACATGTTATACGTGATTATGTGAAACAAATAGTTTTAAG
128 GTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * * *
910075 AAGAGGCGTTTGTACTCCAACGGTTAGGATAATTGCCTTCTAAGCAATAGAATCAGGTTCGACT-
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * * *
910139 CCGGAAAAACACAATTACGATTGTAAAAAATTAAGGGGAAAATTTTTAAAAGTAAAACGAGTAGT
66 CCAG-AAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGT
* * *
910204 AGTATATAGTTGTTGTTCGTGATTATGTGAAACAAATAGTGTAAAC
130 -GTATA-CG-TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * ** * * *
910250 AAAAGGCATTTGTAGTCCAACACTTAAGATAATTGCCTTACAAGCAATAGACTCGAGTTCGACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * * ** * * *
910315 CC-GTCAAATG-AATTACGTTAGTAAAAAATTAAAAGGAAATTTTTTAAAAGTAAAACGAGTTGT
66 CCAG-AAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGT
* * * *
910378 GTATACGTGTTTTTATTCATTAAGTGAAACAAATAGTGTCAATAAG
130 GTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGT--A-AAG
** * * * * *
910424 AGAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGTGATCGACCCAGGTTTGACA
1 A-AGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACT
* * * * * *
910489 CCC-GACAAACACAATCACGATCGTAAAAAATT-AGGGGGAGATTTTAAAAAGTAAAACGAGTAG
65 CCCAGA-AAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAG
* * ** * * *
910552 TGTATACATGATGTAATTGCTTACGTGAAACAAATAGTGTAAAT
129 TGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * * ** * * * * *
910596 ATGATGCATTCATAGTCCTACAGTTAGGATAATTTCCTTCCAATCAATAGACTCAGGTTCGACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* *
910661 CCAGAAAACGTAATTACGATAGTAAAAAATTAAGGGGAAAATGTTGAAAAGTAAAAC-AGTAGTG
66 CCAGAAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTG
* *
910725 TATACATGTTGTTATTTTGATTATGTGAAACAAATAGTGTAAAG
131 TATACGTGTTG-T-TCTTGATTATGTGAAACAAATAGTGTAAAG
* * * * * * *
910769 AAGA-G-G--TATATTCCAACGATTAGGATAATTGACTTCCAAGTAATAGACCCGGGTTGGACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * *
910830 CC-GACAAATGCAATTACGATAGTAGTACAAATTTAAGGGGAAAATTTTGAAAAGTAAAACAAG-
66 CCAGA-AAACGCAATTACGATAGTA--A-AAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGT
* * * * *
910893 ATGTGTACATGTTTTGTTATTGATTATGTGAAACAAATAGCGTAAAG
127 A-GTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * * ** *** * * * * *
910940 AGGAGGTGTTTTTCTTCCAACCACTAGGAT-ATTGCCTTCCAGGCAAGAAACCCGGGTTCGAC-G
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
*** * * * * **
911003 GGTGAAAAAGGCAATTTCGATAGTAAAAAAATAAGGGGAAAATTTTGAAAAGTAAAACAAACAGT
66 CCAG-AAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGT
* * * **
911068 GTTTACCTTTTGTTCTTGATTACATGAAACAAATAGTGTAAAG
130 GTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* ** * * *
911111 AATAGGTATTTGTAGTCCAACGGTTAGGCTAA-TGACCATT-CAAGCAATAGACCCGGGTTCAAC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTG-CC-TTCCAAGCAATAGACTCGGGTTCGAC
* * ** * ***
911174 T-ACAGGAAAATG-AATTACGATTTTATAAAATTAAGGGGAAAATTTTGAAAAGTAAATTTAGTA
64 TCCCA-GAAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGT-
* * * * * * *
911237 ACATATATATGTGTTGTTCTTGATTAT-TTAAA-AAATTGTGTGAAT
127 A-GTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * ** *
911282 AAGAGGCGTTTGTAATCCAACGGTTAGGATAATTACCTTTTAAGCAATAGACCCGGGTTCGACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * * * * *** * *
911347 TCGGCAAACGCAATGACAATAGTAAAAAATTAAGCAAAAAACTTTAAAAAGTAAAACGAGTAGTG
66 CCAGAAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTG
911412 TATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTGTAAA-
131 TATACGTGTTGTTCTTGATTATGTGAAACAAATA--GTGTAAAG
* ** * * * *
911455 AATGAGGTGTTTGTAGTCCAACAATTAGGATAATTGCCTTCCGATCAATATACCCGGGTTCGACT
1 AA-GAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACT
* * * *
911520 CCC-GACAAACACAATTACGATGGTAAAAACTTAAGGGGGAAATGTTT-AAAAGTAAAACGAGTA
65 CCCAGA-AAACGCAATTACGATAGTAAAAAATTAAGGGGAAAAT-TTTGAAAAGTAAAACGAGTA
* * * *
911583 GTGTGTACGTGTTATT-TGTGATTATGTAAAACAAATAGTTTAAAG
128 GTGTATACGTGTTGTTCT-TGATTATGTGAAACAAATAGTGTAAAG
* * * *
911628 AAGAGGCGCTTATAGTCCAACGGTTAGGATAATTGCCTTCTAAGCAATAGTCTCGGGTTCGAC-C
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
** * * * * *
911692 CTGGGAAAACGCAATTGCAATAGTAAAAAATCAA--GGAAATTTTTTGAAAAGTAATACGAGTAG
66 C-CAGAAAACGCAATTACGATAGTAAAAAATTAAGGGGAAA-ATTTTGAAAAGTAAAACGAGTAG
*
911755 TGTATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
129 TGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * **
911799 AAGAGGTGTTTGTTGTCCAACAATTAGGATAATTGCCTTCCAAGCAATAGAACT-GGGTTCGACT
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAG-ACTCGGGTTCGACT
* * * * * * ** * *
911863 CTC-GTTAAATG-AATTAAGTTAATAAAAAATTAAAAGGAAATTTTTAAAAAGTAAAACGAGTAG
65 CCCAG-AAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAG
* * * ** *
911926 TGTATATGTGTTTTTCTTTATTATAAGAAACAAATAGTGTAAAT
129 TGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
** * * * *
911970 AAGAGGAATTTGTAGTCCAAGGGTTAGGATAATTGCCTTTCAAGCGATAGACTTGGGTTCGACT-
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * ** * * *
912034 CCAGATGAACACAATCGCGATCGTAAAAAATTAAGGGGAAAAATTTAAAAAGTAAAACGAGTAGT
66 CCAGA-AAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGT
* ** *
912099 GTATTACATGTTGGTT-TTGATTACCTGAAAAAAAATAGTGTAAAG
130 GTA-TACGTGTT-GTTCTTGATTATGTG-AAACAAATAGTGTAAAG
* * * * ** * * * *
912144 ATGACGCGTTCGTAGTCCTATAGTTAGGATAATTTCCTCTTTCAATCAATAGACTCAGGTTCG--
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAA-TTGC-CTTCCAAGCAATAGACTCGGGTTCGAC
* * * * * * *
912207 T---AGTCATACGTAATTACGATAGTAAGAAATTAAGGGGAAAATGTTGAAAAGTAAAATGACTA
64 TCCCAG-AAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTA
* * * * *
912269 TTGTATATGTGTTGTTCTTGATTAAGTAAAACAAATAGTGTAAAC
128 GTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* *
912314 AA-A---ATGTGTAGTCCAACGGTTAGGATAATTGCCCTTCCAAGCAATAGACTCGGGTTCGACT
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTG-CCTTCCAAGCAATAGACTCGGGTTCGACT
* * * * *
912375 CCC-GACAAACACGATTATG-CAGT-AAAAATTCAAGGGGAAAATTTTGAAAAGTAAAACAAGTA
65 CCCAGA-AAACGCAATTACGATAGTAAAAAATT-AAGGGGAAAATTTTGAAAAGTAAAACGAGTA
* * * * * **
912437 GTGTATAGGTTTTGTTATTGATTATGTGGAACAAAAAGCATAAAG
128 GTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* ** *** * * * * * **
912482 AAGAGGTGTTTGTCTTCCAACCACTAGGACAATTGCCTTCTAGGCAATAAACAC-GGTTCGACAG
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * * * **
912546 GC-GAAAAAGGCAATTTCGATAGTAAAAAATTAAGGGG-AAATTTTGAAAAGTAAAACAAACAGT
66 CCAG-AAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGT
* * * *
912609 -TTTACCTTTTGTGT-TTGATTATGTGAAACAAATAGTGTAAAC
130 GTATACGTGTTGT-TCTTGATTATGTGAAACAAATAGTGTAAAG
* ** * * * * * * *
912651 AATAGGTATTTTTAGTCCAACGGTTAGGCTAATTACCTTCCAAGCAAAATACTCGGGTTTGACTT
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * * * * * * **
912716 CCGGCAAATG-AATTACGATTGCAAAAAATTAAGGGGATAATTTTGAAAAGTAGATTGAGTAGTG
66 CCAGAAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTG
* * * * * * *
912780 TACACGTGTTGTTCTCGATTATGTAAAAGAAATAGTATGAAT
131 TATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * ** ** * * ***
912822 AAGA---G-TAGT-GTAC-A-GGTTTTG-TTCTTGACTATGTGAAACAAATAGCGTAA-AGAGGA
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTG-C-CT-T----C-CA-AGC--AATAGACTC
* * * * * * * ** * *
912878 GGTGTTTGTCTTCC-GATCACTAGGATAATTGCCTTCTAGTCAATAAACCCGGGTTCGATAGGCG
55 GG-GTTCGACTCCCAGA--A-AACG-CAATT-AC-GATAGT-AA-AAA-----ATT--A-AGGGG
* * *** * * ** *
912942 AAAAAGGCAATTTTG-ATAGT-AAA--A-TA-T-TA-A-GGGAAAATT-TTGA-AAAGAAAAAAA
103 AAA------ATTTTGAAAAGTAAAACGAGTAGTGTATACGTG-TTGTTCTTGATTATGTGAAACA
* * **
912996 AACAGTGTTTACC
161 AATAGTG-TAAAG
** ** * * ** * * * * ** * * * *
913009 TTG-GGAAAATTTTTAAAATTAAAACAGATAGTG-T--TTACCTTTCGTGC--TTGATTACATGA
1 AAGAGG--CGTTTGT---AGTCCAACGGTTAG-GATAATTGCCTTCCAAGCAATAGACT-C-GGG
** * * *** * ** * *** * ** ** **
913068 AACAAAT-AGTGTAAA-G-AATAGGTATTTATAGTCCAACGGTT-ATGCTAATTACCTTCCAAGC
58 TTCGACTCCCAGAAAACGCAAT---TA-CGATAGT-AAAAAATTAAGGGGAA--AATTTTGAA--
* * * ** * *** ** * * * *
913129 AAATGAATTACGA--A-TGTCAAAAAT-TAAGGGGTAAATT-T-TGAAAAGTAAATTGAGTAATG
114 AAGT-AA-AACGAGTAGTGT-ATACGTGT-TGTTCTTGATTATGTG-AAA-CAAATAGTGTAAAG
* * * * ** * * * * * * * * *
913188 TATATGTG-TTGTTA-TTGATTA-TGTAAAAGA-AATAG--TGT-GAA-TAAGAGGCACTTGTAG
1 AAGAGGCGTTTG-TAGTCCA--ACGGT-TAGGATAATTGCCT-TCCAAGCAATA-G-ACTCG-GG
* * **** ** * * * * * *** *** * *** * *
913245 TCCAACGGTTAGGATAATTGC-CTT-CCA-AGCAATAGA-CCCGGGTTCGACTCACGGCAAACGC
58 TTCGACTCCCA-GA-AAACGCAATTACGATAGTAAAAAATTAAGGG-GAAAAT-TTTG-AAAAGT
* * ** * * ** ** * * * * *
913306 AATGAC-AATAGTAAAAAAGTAAGGGGAAATT-TT-AAAAAGT-AGAACGAGTATTGTATATG
118 AA-AACGAGTAGTGTATACGT--GTTG---TTCTTGATTATGTGA-AACAAATAGTGTA-AAG
* * ** * * * * ** *** *
913365 TATTGTTCTTGATTGATTATGTGAATCAAATAGTGTAAAGACGAGGTGTTTGTAGTCCAACGGTT
1 -A-AG----AG-GCG-TT-TGT-AGTCCAA-CG-GT-TAG--GA--TAATTGCCTTCCAA--G-C
* ** * * * ** * * * **
913430 AGGATA-A-TTGCCTTTC-AAT-CGATATACTCGGGTTCGACTCCCAAC-AAAGGTAATTATGAT
46 A--ATAGACTCG-GGTTCGACTCCCAGA-AAAC--G--C-AAT---TACGATA-GTAA--AAAAT
* * * * * *
913490 GGTAAAAAATTAAGGGGAAAATGTTGGAAAGTGAAACTAGTAGTGTATAAGTGTTGTTCTTGTTT
96 --T---A-----AGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATT
* *
913555 ATGTGAAAGAAATAGCT-TAAAT
151 ATGTGAAACAAATAG-TGTAAAG
* * ** * * * * *
913577 AAGAGGCGTTTTTAGTACAACAATTAGGATAATTTCCTTCCAAACAAAAGACTCGAGTTCAACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
** * * * * * *
913642 CTGGTAAACACAATTATGATAGTAAAAATTTAAGGCGAAAATGTTT-AAAAGTAAAACAAGTAGT
66 CCAGAAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAAT-TTTGAAAAGTAAAACGAGTAGT
*
913706 GTATACGTGTTATTCGTT-ATTATGTGAAACAAATAGTGTCAAA-
130 GTATACGTGTTGTTC-TTGATTATGTGAAACAAATAGTGT-AAAG
* * * *
913749 AAGAGGCATTTGTAGTCCAACGCTTAGGATAATTGCCTTCCAAGCAATAAACTCGGGTTTGACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * * * * * ** ** *
913814 AC-GAGAAATGAAAATTACGTTTGTAAGAAATTAAAAGGAATTTTTTTAAAAGTAAAACGAGTAG
66 CCAGA-AAACG-CAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAG
**
913878 TGTATACGTGTTGTTCTTGATTACCTGAAACAAATAGTGTAAAG
129 TGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * * * * * * *
913922 ATGATGCGTTCGTAGTACTACAGTTAGGATAATTGCCTTTCAATCAATAGACTCGGGTTCGACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * *
913987 CCA-ACAAACGCAATTAGGATAGTAAAAAATTAAGGGGAAAATATTGAAAAGTAAAACGAGTAAT
66 CCAGA-AAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGT
*
914051 GTATACGTGTTGTTATTGATTATGTGAAACAAATAGTGTAAAG
130 GTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * * * *
914094 AAGA-G-G--TGTAGTCCAACGATTAGTATAATTTCCTTCCAAGAAATAGATTCGGGTTCGACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * * * * * *
914155 CCGGTAAACACAATTACTATAGTTAAAGAATTAAGGGG--AGTTGTTGAAAAGTAAAATGAGTAG
66 CCAGAAAACGCAATTACGATAG-TAAAAAATTAAGGGGAAAATT-TTGAAAAGTAAAACGAGTAG
* * * * * * *
914218 TGTATACATGTTATTATCGGTTATGTGAAACCAAATAGTTTAAGG
129 TGTATACGTGTTGTTCTTGATTATGTGAAA-CAAATAGTGTAAAG
* * *
914263 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGGCCCGGGTTCAACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
** * * * *
914328 CTGGCAAATGCAATTATGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTG
66 CCAGAAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTG
* *
914393 CATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
131 TATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * ** * * ** * *
914435 AAGAGACATTTGTAGTCCAACCATTAGGATAATTGCCACTCCAAACTGTAGTCCCGGGTTCGACT
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCC-TTCCAAGCAATAGACTCGGGTTCGACT
* *** * * * * * *
914500 CTC-GAAAAATATAATTTCGATAGTAAAAAATAAAGTGGTAAATTTTGAATAGTAAAACGAATAG
65 CCCAG-AAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAG
* * * * * * * *
914564 TTTTTACCAT-TTCTGCTTGATTATGTGAAACTAATACTGTAAAA
129 TGTATA-CGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * ** * * * * * *
914608 AAGAGGCGTTTGTAATCCTATTGTTAGGATAATTGTCTTGCAAGCAACAAACTCGGGTTTGAGTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * * * * * *
914673 CCGGCAAAA--AAATTATGATTGTAAAAAAATTAAGGGGAAAATTTTGAAAAATAAAACAAATAG
66 CCAG-AAAACGCAATTACGATAGT-AAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAG
* ** * * * * *
914736 TATATATATATATATATACCTTTTATGCTTGATAATATATAACAAATAGTGT--A-
129 TGTATACGTGT-TGT-T--C---T-TGATT-AT-GT-GA-AACAAATAGTGTAAAG
* * * * * * * *
914789 AAGAGGAGTTTTTAGTCCAACGGTTTGGATGAGTGCCTTCCAAGCAATAGGCTCTGGTTCGACTT
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * * * * * * * * ** * *
914854 ACTGCAAATGCGATTACAATAGTAAAATATTAAGGGGAAAATATAGAAAAGTAAAATAATTAG-C
66 CCAGAAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTG
* * *
914918 TATACTTTTTGTTCTTGATTATGTGAAAC-AATACTGTAAAG
131 TATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * * * * * ** * *
914959 AAGAGCCGTTTGTAGTCCAACTGTTAGGATAATTGCCTTCTAAGTAATAGGCCCTAGTTTGACTT
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
*** * * * * **
915024 TTGGAAAACGTAATTACGATAGTAAAAATTTAA-GGGAAAA-ATTGAAAAGTAAAATGAAAAGTG
66 CCAGAAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTG
** * ****
915087 TATATC-T-TTCGCGCTTAATTATGTGATTGGAATAGTGTAAAG
131 TATA-CGTGTT-GTTCTTGATTATGTGAAACAAATAGTGTAAAG
* ** * *
915129 AAGAGGCGTTTGAAGTCCAACGGTTAGGATAATAACCTTCCAAGCAATAAACCCGGGTTCGACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * * * *
915194 CCA-ACAAATGCGACTACGATAGTAAAAAATTAAGGGG-AAATTTTAAAAAGTAAAAAGAGTAGT
66 CCAGA-AAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGT
* * * ** **
915257 GTATACATGTTTTTCTAGATTATGCAAAATGAATAGTGTAAAG
130 GTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * * * * *
915300 AAGAGGCGTTTGTAGTCCAGCGATTATGATAATTTCCTTCCAAGCAATAGAGATCTGAGTTCGAC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGA-CTC-GGGTTCGAC
* * * * *
915365 TCCCAGCAAACACAATTACGATAGTAAAAAATTAAGGGGAAAATGTTGAAAAGTAAAATGAGCAG
64 TCCCAGAAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAG
* * *
915430 TGTATACGTGTTGTACTTGATTATGTGAATCAAATAGTTTAAAG
129 TGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * * *
915474 AAGAGGCATTTGTAGTCCAACGGTTTGGATAATTGCCTTTCATA-CAATGGACTC-GGTTCGACT
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCA-AGCAATAGACTCGGGTTCGACT
* * *** * * * *
915537 CTCGATAAATATAATAATTACAATATTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAATGTGT
65 C-CCAGAAA-A-CGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGT
* * * ** *
915601 A-TGTATACTTGTTGTTCTTGATTATGTGAAAGAAATATTGGGAAT
127 AGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* *
915646 AAGAGGCATTTGTAGTCCAATGGTTAGGATAATTGCCTTCCAAGCAATAGAC-CTGGGTTCGACT
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTC-GGGTTCGACT
* * * * * *
915710 CCTA-CAATCGCAA-TA--ATA--AAATAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATAGT
65 CCCAGAAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGT
* * * ** * * *
915769 GTAAACCTTTTGTGGTTGATTATGTGAAATGAAGAAAATGTAAAG
130 GTATACGTGTTGTTCTTGATTATGTGAAA-CAA-ATAGTGTAAAG
*** * * *
915814 AAGATATGTTTGTAGTCCAATGGTTAGGATAATTACCTTCCAAGCAATAGAAC-CGGGTTTGACT
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAG-ACTCGGGTTCGACT
*** ** * * * *
915878 CATGGCTAATGTAACTACGATAGTAAAAAATTAAGGGGAAATTTTTGAAAAGTAAAACGAGTAGT
65 CCCAGAAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGT
* * *
915943 GTATACATGTTGTTCTTGATTATGTGAAACAAATAGTTTGAAG
130 GTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
** ** * * *
915986 AAGAGATGTTTGTAGTCCAATTGTTAGGATAATTGCCTTCGAATCAATAGACTCGGGCTT-GAGT
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGG-TTCGACT
* * * * *
916050 CCCAGCAAATG-AATTACGATTGTAAAAAATTAAGGGG-AAA-TTTAAAAAGTAAAACGAATAGT
65 CCCAGAAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGT
* * *
916112 GTATACGTGTTGTTCTTGATTATGTGAAAGAAATAGTGTTAAT
130 GTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * *
916155 AAGAGGTGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCTAAGCAATAGACCCGGGTTCGACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
*** * ** * * * * *
916220 ATGGCAAACGC-ATTCAAAATAATAACATTAATTAAGGGTAAAATTTTAAAAAGTAAAACGAATA
66 CCAGAAAACGCAATT-ACGATAGTAA-A-AAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTA
* * * * * ** **
916284 ATGTAAACCTTTTGTGCTTGATTATGTGAAATGAATAAAGTAAAG
128 GTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
** * * * * *
916329 AAGTTGCGTTTCTAGTCGAACGGTTAGGATAATTACCTTCCAAGCAATAGAC-CAAGGTTTGACT
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTC-GGGTTCGACT
** ** * * *
916393 CCTGGCTAATGCAATTACGATAGTAAAAAATTAAGCGGAAATTTTTGAAAAGTAAAACGAGTAGT
65 CCCAGAAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGT
* *
916458 GTATACATGTTGTTCTAT-ATTATGTGAAACGAATAGTGTAAAG
130 GTATACGTGTTGTTCT-TGATTATGTGAAACAAATAGTGTAAAG
* * * * ** ** * * * * * **
916501 AATATGTGTTTCTAGTGTAACTATTAGGTTAATTTCTTTCCAAGCAATA-CCCCGGGTTTTACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* ** * * *
916565 CCGGCAAAA-AAAATTATGACAGTAAAAAATTAAGGGAAAAATTTTGAAAAGTAAAACGAGTAGT
66 CCAG-AAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGT
* * * * * *
916629 TTGTACGTGTTGTTCTTGATTGTTTGAAACAAATAGTTTAAAT
130 GTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * * * * ** * *
916672 AAGAGCCCTTTGTAGTCCAACGGTTTGGATAATTACCTTTCTTGAAATGGAC-CAGGGTTCGACT
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTC-GGGTTCGACT
* * * * * * * * * * *
916736 CTCGGTAAATGTAATTACGATATTAAAATATTAAGGGGAAATTTTTGAAATGTAAAATGAATAGT
65 CCCAGAAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGT
* * * * ** * *
916801 ATTTATC-TTTTGTGCTTGATTATGTGAAATGAATTGTGTAGAG
130 GTATA-CGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
*
916844 AAGAGGCGTTAGTAGTC
1 AAGAGGCGTTTGTAGTC
916861 TAAAAACCTC
Statistics
Matches: 5345, Mismatches: 1413, Indels: 748
0.71 0.19 0.10
Matches are distributed among these distances:
163 3 0.00
164 15 0.00
165 50 0.01
166 52 0.01
167 21 0.00
168 262 0.05
169 357 0.07
170 328 0.06
171 934 0.17
172 1197 0.22
173 797 0.15
174 622 0.12
175 243 0.05
176 60 0.01
177 15 0.00
178 12 0.00
179 13 0.00
180 27 0.01
181 90 0.02
182 23 0.00
183 3 0.00
184 18 0.00
185 4 0.00
186 17 0.00
187 16 0.00
188 8 0.00
189 8 0.00
190 9 0.00
191 8 0.00
192 10 0.00
193 1 0.00
194 4 0.00
195 18 0.00
196 12 0.00
197 7 0.00
198 7 0.00
199 6 0.00
200 3 0.00
201 2 0.00
202 6 0.00
203 2 0.00
204 3 0.00
205 3 0.00
206 4 0.00
208 2 0.00
210 1 0.00
211 3 0.00
212 3 0.00
213 10 0.00
214 4 0.00
215 2 0.00
216 14 0.00
217 1 0.00
218 2 0.00
219 3 0.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.30
Consensus pattern (172 bp):
AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
CCAGAAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTG
TATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
Found at i:913015 original size:39 final size:39
Alignment explanation
Indices: 912972--913049 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 39
912962 AAAATATTAA
912972 GGGAAAATTTTGAAAAGAAAAAAAAACAGTGTTTACCTT
1 GGGAAAATTTTGAAAAGAAAAAAAAACAGTGTTTACCTT
* ** * * *
913011 GGGAAAATTTTTAAAATTAAAACAGATAGTGTTTACCTT
1 GGGAAAATTTTGAAAAGAAAAAAAAACAGTGTTTACCTT
913050 TCGTGCTTGA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.45, C:0.08, G:0.17, T:0.31
Consensus pattern (39 bp):
GGGAAAATTTTGAAAAGAAAAAAAAACAGTGTTTACCTT
Found at i:914452 original size:686 final size:683
Alignment explanation
Indices: 909008--917790 Score: 4342
Period size: 686 Copynumber: 12.8 Consensus size: 683
908998 AAAGGCCAAA
* * * * * * * *
909008 TAGTGTATACCTTTTGTGCTTGATTATGAT-AAGCAAATAGTGTAATGAAGAAGCATTTGTTGT-
1 TAGTGTATACATGTTGTTCTTGATTATG-TGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTC
* * * * * *
909071 CTAACAGTTATGATAATTGCCTTCCAAGCAATAGACAT-GGGTTCGACTTACTA-CAAATGTAAT
65 CT-ACTGTTAGGATAATTGCCTTCCAAGCAATAGAC-TCGGGTTCGAC-TCCCAGCAAACGCAAT
* * * * * * * * * * *
909134 TACAATAGTAAAATAATTAAGAGGAAGATTTTAAAAATTAAAACGAATAGTGTAAACCTTTTGTG
127 TACGATAGTAAAA-AATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAATGTATACGTGTTGTT
* * * * * * * * **
909199 CTTGAGTATGAGAAATAAATATTGTAAAGAAGTGGTGTTTGGAATCCAAATGTTAGGATAATTGC
191 ATTGATTATGTGAAACAAATAGTGTAAAGAAG-AGTG-TTGTAGTCCAACGGTTAGGATAATTGC
* * * * * * ** * * *
909264 GTTCAAAGCAATTGACCCGGGTTTGATTCTTGGCAAACGCAATCACGATAG-TACAAAATTAAGG
254 CTTCCAAGCAATAGACTCGGGTTCGACTCACGGCAAACGCAATTACAATAGTTAAAAAATTAAGG
* ** * * * * * * *
909328 GGAAATTTTGAAAAGTAAAACGAACAATGTTTACCTTTTGTGCTTGATTACGTAAAATG-AATAG
319 GG-AATTTTGAAAAGTAAAATGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAA-GAAATAG
* * * ** * * * * *
909392 TGTAAATAATAGGTATTTGTCGTCCAACGGTTAGGCTAATTACCTTTCAAGCAATAGACTCGGGT
382 TTTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGT
* * * * *
909457 TCGACTCCCGGTAAATG-AATTACGATTGTAAAAAAAGTAAGGGGAAAATTTTGAAAAGTATAAC
447 TCGACTCCTGGCAAATGCAATTACGATAGT-AAAAAATTAAGGGGAAAATTTTGAAAAGTAAAAC
* * * **
909521 GAGTAGTGTATATGC-GTTGTCCTTGATTATGTG------A-A---T-AAG-AG-G-TGTTTGTA
511 GAATAGTGTATA-CCTGTTGTTCTT-ATTATGTGAAACAAATAGTGTAAAGAAGAGACATTTGTA
* * * * * * * * *
909571 GTCCAACGGTTAGGATAAATGCCTTCCAAGTAATAGACCTGGGTTCGACTC-CCAGCAAACGCAA
574 GTCCAACGCTTAGGATAATTACCTTCCAAGCAATAAACCCGGGTTCGACTCACGAG-AAATGTAA
** * * * *
909635 AGACAATAGTAAAAAATTGAGGGGAAAATTTTAAAAAGTAAAACGAG
638 CTACGATAGTAAAAAATTAAAGGG-AAATTTTGAAAAGTAAAACGAG
* * * **
909682 TAGTGTATACGTGTTGTTATTGATTATGTGAAACAAAT-GCTGTAAAGACGAGGTATTTGTAGTC
1 TAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAG-TGTAAAGAAGAGGCGTTTGTAGTC
* ** * * * *
909746 CAAC-GATTAGGATAATTGCCTTTTAATCAATATACTCGGGTTCGATTCCCAACAAACGCAATTA
65 CTACTG-TTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCAGCAAACGCAATTA
* * * * *
909810 GGATTA-TAAAAAATTAAGGGGAAAATGTTGAAAAGTTAAAACGATTAGTGTATACGTGTTGTTC
129 CGA-TAGTAAAAAATTAAGGGGAAAATTTTGAAAAG-TAAAACGAGTAATGTATACGTGTTGTTA
* * * * * * *** * *
909874 TTGTTTATGTGAAACAAATAACT-TAAATAAAAG-GCATTTTTAGTCCTATAATTAGGACAATTT
192 TTGATTATGTGAAACAAAT-AGTGTAAAGAAGAGTG---TTGTAGTCCAACGGTTAGGATAATTG
* * *** * * * * *
909937 CCTT-CAAGGCAAAAAACTATAGTTCGACTCCCGGTAAACACAATTACAATTGTAAAAAAATTAA
253 CCTTCCAA-GCAATAGACTCGGGTTCGACTCACGGCAAACGCAATTACAATAGTTAAAAAATTAA
* * * * * *
910001 GGGGGAAATGTTT-AAAAGTAAAACGAATAGTGTATACATGTTATACGTGATTATGTGAAACAAA
317 -GGGG-AAT-TTTGAAAAGTAAAATGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAAGAAA
* * * ** *
910065 TAGTTTTAAGAAGAGGCGTTTGTACTCCAACGGTTAGGATAATTGCCTTCTAAGCAATAGAATCA
379 TAGTTTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCG
* ** * *
910130 GGTTCGACTCC-GGAAAAACACAATTACGATTGTAAAAAATTAAGGGGAAAATTTTTAAAAGTAA
444 GGTTCGACTCCTGG-CAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAA
* ** * * * *
910194 AACGAGTAGTAGTATATAGTTGTTGTTCGTGATTATGTGAAACAAATAGTGTAAACAAAAGGCAT
508 AACGA--A-TAGTGTATACCTGTTGTTC-TTATTATGTGAAACAAATAGTGTAAAGAAGAGACAT
* * * * * * * * **
910259 TTGTAGTCCAACACTTAAGATAATTGCCTTACAAGCAATAGACTCGAGTTCGACTCCCGTCAAAT
569 TTGTAGTCCAACGCTTAGGATAATTACCTTCCAAGCAATAAACCCGGGTTCGACTCACGAGAAAT
* * * *
910324 G-AATTACGTTAGTAAAAAATTAAAAGGAAATTTTTTAAAAGTAAAACGAG
634 GTAACTACGATAGTAAAAAATTAAAGGGAAA-TTTTGAAAAGTAAAACGAG
* * * * * *
910374 TTGTGTATACGTGTTTTTATTCATTAAGTGAAACAAATAGTGTCAATAAGAGAGAGGCGTTTGTA
1 TAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGT--A-AAGA-AGAGGCGTTTGTA
* * ** * * * * * *
910439 GTCCAACGGTTAGGATAATTGCCTTCCAAGTGATCGACCCAGGTTTGACACCC-GACAAACACAA
62 GTCCTACTGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCAG-CAAACGCAA
* * * * * * * * *
910503 TCACGATCGTAAAAAATT-AGGGGGAGATTTTAAAAAGTAAAACGAGTAGTGTATACATGATGTA
126 TTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAATGTATACGTGTTGTT
* * * * * * * *
910567 ATTGCTTACGTGAAACAAATAGTGTAAATATGA-TGCATTCATAGTCCTACAGTTAGGATAATTT
191 ATTGATTATGTGAAACAAATAGTGTAAAGAAGAGTG--TT-GTAGTCCAACGGTTAGGATAATTG
* * * * * * *
910631 CCTTCCAATCAATAGACTCAGGTTCGACTCCCAGAAAACGTAATTACGATAG-TAAAAAATTAAG
253 CCTTCCAAGCAATAGACTCGGGTTCGACTCACGGCAAACGCAATTACAATAGTTAAAAAATTAAG
* * * *
910695 GGGAAAATGTTGAAAAGTAAAA-CAGTAGTGTATACATGTTGTTATTTTGATTATGTGAAACAAA
318 GGG--AATTTTGAAAAGTAAAATGAGTAGTGTATACATGTTG-T-TCTTGATTATGTGAAAGAAA
* * * * * *
910759 TAGTGTAAAGAAGA-G-G--TATATTCCAACGATTAGGATAATTGACTTCCAAGTAATAGACCCG
379 TAGTTTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCG
* * * *
910820 GGTTGGACTCCCGACAAATGCAATTACGATAGTAGTACAAATTTAAGGGGAAAATTTTGAAAAGT
444 GGTTCGACTCCTGGCAAATGCAATTACGATAGTA--A-AAAATTAAGGGGAAAATTTTGAAAAGT
* * * * * * ***
910885 AAAAC-AAGA-TGTGTACATGTTTTGTTATTGATTATGTGAAACAAATAGCGTAAAGAGGAGGTG
506 AAAACGAATAGTGTATACCTG--TTGTTCTT-ATTATGTGAAACAAATAGTGTAAAGAAGAGACA
* ** * * * * **** *
910948 TTTTTCTTCCAAC-CACTAGGAT-ATTGCCTTCCAGGCAAGAAACCCGGGTTCGACGGGTGAAAA
568 TTTGTAGTCCAACGC-TTAGGATAATTACCTTCCAAGCAATAAACCCGGGTTCGACTCACGAGAA
* * * * * * * *
911011 AGGCAATTTCGATAGTAAAAAAATAAGGGGAAAATTTTGAAAAGTAAAACAAA
632 ATGTAACTACGATAGTAAAAAATTAAAGGG-AAATTTTGAAAAGTAAAACGAG
* * * * ** * **
911064 CAGTGTTTACCTTTTGTTCTTGATTACATGAAACAAATAGTGTAAAGAATAGGTATTTGTAGTCC
1 TAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCC
* * * * * * * *
911129 AACGGTTAGGCTAA-TGACCATT-CAAGCAATAGACCCGGGTTCAACT-ACAGGAAAATG-AATT
66 TACTGTTAGGATAATTG-CC-TTCCAAGCAATAGACTCGGGTTCGACTCCCA-GCAAACGCAATT
** * *** * *
911190 ACGATTTTATAAAATTAAGGGGAAAATTTTGAAAAGTAAATTTAGTAACATATATATGTGTTGTT
128 ACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGT-A-ATGTATACGTGTTGTT
* * * * * * * *
911255 CTTGATTAT-TTAAA-AAATTGTGTGAATAAGAGGCGTTTGTAATCCAACGGTTAGGATAATTAC
191 ATTGATTATGTGAAACAAATAGTGTAAAGAAGA-GTG-TTGTAGTCCAACGGTTAGGATAATTGC
** * * *
911318 CTTTTAAGCAATAGACCCGGGTTCGACTCTCGGCAAACGCAATGACAATAG-TAAAAAATTAAGC
254 CTTCCAAGCAATAGACTCGGGTTCGACTCACGGCAAACGCAATTACAATAGTTAAAAAATTAAG-
*** * * * * *
911382 AAAAAACTTTAAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAG
318 -GGGAATTTTGAAAAGTAAAATGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAAGAAATAG
* ** * * *
911447 TGTGTAAA-AATGAGGTGTTTGTAGTCCAACAATTAGGATAATTGCCTTCCGATCAATATACCCG
382 T-T-TAAAGAA-GAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCG
* * ** * * *
911511 GGTTCGACTCCCGACAAACACAATTACGATGGTAAAAACTTAAGGGGGAAATGTTT-AAAAGTAA
444 GGTTCGACTCCTGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAAT-TTTGAAAAGTAA
* * * * * * * **
911575 AACGAGTAGTGTGTACGTGTTATT-TGTGATTATGTAAAACAAATAGTTTAAAGAAGAGGCGCTT
508 AACGAATAGTGTATACCTGTTGTTCT-T-ATTATGTGAAACAAATAGTGTAAAGAAGAGACATTT
* * * * ** * * *
911639 ATAGTCCAACGGTTAGGATAATTGCCTTCTAAGCAATAGTCTCGGGTTCGAC-C-CTGGGAAAAC
571 GTAGTCCAACGCTTAGGATAATTACCTTCCAAGCAATAAACCCGGGTTCGACTCAC-GAG-AAAT
* * * * * *
911702 GCAATTGCAATAGTAAAAAA-TCAA-GGAAATTTTTTGAAAAGTAATACGAG
634 GTAACTACGATAGTAAAAAATTAAAGGGAAA--TTTTGAAAAGTAAAACGAG
** * *
911752 TAGTGTATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGTGTTTGTTGTCC
1 TAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCC
* ** * * *
911817 AACAATTAGGATAATTGCCTTCCAAGCAATAGAACT-GGGTTCGACTCTC-GTTAAATG-AATTA
66 TACTGTTAGGATAATTGCCTTCCAAGCAATAG-ACTCGGGTTCGACTCCCAG-CAAACGCAATTA
* * * ** * * * * * *
911879 AGTTAATAAAAAATTAAAAGGAAATTTTTAAAAAGTAAAACGAGTAGTGTATATGTGTTTTTCTT
129 CGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAATGTATACGTGTTGTTATT
* ** * *
911944 TATTATAAGAAACAAATAGTGTAAATAAGAG-GAATTTGTAGTCCAAGGGTTAGGATAATTGCCT
194 GATTATGTGAAACAAATAGTGTAAAGAAGAGTG---TTGTAGTCCAACGGTTAGGATAATTGCCT
* * * * * ** * *
912008 TTCAAGCGATAGACTTGGGTTCGACTC-CAG-ATGAACACAATCGCGATCG-TAAAAAATTAAGG
256 TCCAAGCAATAGACTCGGGTTCGACTCACGGCA--AACGCAATTACAATAGTTAAAAAATTAAGG
* * * ** *
912070 GGAAAAATTTAAAAAGTAAAACGAGTAGTGTATTACATGTTGGTT-TTGATTACCTGAAAAAAAA
319 GG--AATTTTGAAAAGTAAAATGAGTAGTGTA-TACATGTT-GTTCTTGATTATGTG-AAAGAAA
* * * * * ** * * * *
912134 TAGTGTAAAGATGACGCGTTCGTAGTCCTATAGTTAGGATAATTTCCTCTTTCAATCAATAGACT
379 TAGTTTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAA-TTGC-CTTCCAAGCAATAGACC
* * * * * * * *
912199 CAGGTTCG--T--AGTCATACGTAATTACGATAGTAAGAAATTAAGGGGAAAATGTTGAAAAGTA
442 CGGGTTCGACTCCTGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTA
* * * ** * * * *
912260 AAATGACTATTGTATATGTGTTGTTCTTGATTAAGTAAAACAAATAGTGTAAA-CA-A-A-ATGT
507 AAACGAATAGTGTATACCTGTTGTTCTT-ATTATGTGAAACAAATAGTGTAAAGAAGAGACATTT
* * * * * * **
912321 GTAGTCCAACGGTTAGGATAATTGCCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACA
571 GTAGTCCAACGCTTAGGATAATT-ACCTTCCAAGCAATAAACCCGGGTTCGACTCACGAGAAATG
** * * * * *
912386 CGATTATG-CAGT-AAAAATTCAAGGGGAAAATTTTGAAAAGTAAAACAAG
635 TAACTACGATAGTAAAAAATT-AAAGGG-AAATTTTGAAAAGTAAAACGAG
** * * * * ** * **
912435 TAGTGTATAGGTTTTGTTATTGATTATGTGGAACAAAAAGCATAAAGAAGAGGTGTTTGTCTTCC
1 TAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCC
* *** * * * * * *** * * *
912500 AACCACTAGGACAATTGCCTTCTAGGCAATAAACAC-GGTTCGACAGGC-GAAAAAGGCAATTTC
66 TACTGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCAG-CAAACGCAATTAC
* ** * * * *
912563 GATAGTAAAAAATTAAGGGG-AAATTTTGAAAAGTAAAACAAACAGT-TTTACCTTTTGTGT-TT
130 GATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAATGTATACGTGTTGT-TATT
* * * * * *
912625 GATTATGTGAAACAAATAGTGTAAACAATAGGTATTTTTAGTCCAACGGTTAGGCTAATTACCTT
194 GATTATGTGAAACAAATAGTGTAAAGAAGA-GT-GTTGTAGTCCAACGGTTAGGATAATTGCCTT
* * * * * * *
912690 CCAAGCAAAATACTCGGGTTTGACTTC-CGGCAAATG-AATTACGATTG-CAAAAAATTAAGGGG
257 CCAAGCAATAGACTCGGGTTCGAC-TCACGGCAAACGCAATTACAATAGTTAAAAAATTAAGGGG
* * * * * *
912752 ATAATTTTGAAAAGTAGATTGAGTAGTGTACACGTGTTGTTCTCGATTATGTAAAAGAAATAGTA
321 --AATTTTGAAAAGTAAAATGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAAGAAATAGT-
* * * * * *
912817 TGAATAAGAGTAGTGTACAGGTTTTGTTCTTGACTATGTGAAACAAATAGCGTAAAGAGGAGGTG
383 T---TAA-AG-A----AGAGG---CG-T-TTG--TA-GT----CCAA-CG-GT---TAGGA--TA
* * * * * *** ** * * * ** *** * * *
912882 TTTGTCTTCCGATCACTAGGATAATTGCCTTCTAGTCAATAAACCCGGGTTCGA-TAGGCGAAAA
420 ATTGCCTTCCAAGCAATA-G--ACCCGGGTTCGACTC-CT---GGCAAATGCAATTA--CG-ATA
* ** * *
912946 AGGCAATTTTGATAGTAAAATATTAA-GGGAAAATTTTGAAAAGAAAAAAAAACAGTGTTTACCT
475 ----------G-TA--AAAA-ATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTATACCT
* * ** * * ***** *
913010 -TGGGAAAATTTTTAAAAT-TAAAACAGATAGTGTTTACCTTTCGTG-CTTGATTACATGAAACA
526 GT-TG----TTCTTATTATGTGAAACAAATAGTG--TA-AAGAAGAGAC---ATT---TG-----
** * ** * *** ** * ** *** *
913072 AATAGTGTAAAGAATAGG-TATTTATAGTCCAA-CGGT-TATGCTAATT--ACCTTC-CAAGCAA
572 --TAGTCCAACGCTTAGGATAATTACCTTCCAAGCAATAAACCCGGGTTCGA-C-TCACGAG-AA
* * * **
913131 ATG-AATTACGA-ATGTCAAAAATTAAGGGGTAAATTTTGAAAAGTAAATTGAG
632 ATGTAACTACGATA-GTAAAAAATTAAAGGG-AAATTTTGAAAAGTAAAACGAG
* ** * * * * * **
913183 TAATGTATATGTGTTGTTATTGATTATGTAAAAGAAATAGTGTGAATAAGAGGCACTTGTAGTCC
1 TAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCC
* * * * * * *
913248 AACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCACGGCAAACGCAATGACA
66 TACTGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCAGCAAACGCAATTACG
* * * * * *
913313 ATAGTAAAAAAGTAAGGGG-AAATTTTAAAAAGTAGAACGAGTATTGTATATGTATTGTTCTTGA
131 ATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAATGTATACG---TGTTGTT-A
* *
913377 TTGATTATGTGAATCAAATAGTGTAAAGACGAGGTGTTTGTAGTCCAACGGTTAGGATAATTGCC
192 TTGATTATGTGAAACAAATAGTGTAAAGAAGA-GTG-TTGTAGTCCAACGGTTAGGATAATTGCC
* * * * * ** * * ** *
913442 TTTCAATCGATATACTCGGGTTCGACTCCCAACAAAGGTAATTATGAT-GGTAAAAAATTAAGGG
255 TTCCAAGCAATAGACTCGGGTTCGACTCACGGCAAACGCAATTACAATAGTTAAAAAATTAAGGG
* * * *
913506 GAAAATGTTGGAAAGTGAAACT-AGTAGTGTATA-AGTGTTGTTCTTGTTTATGTGAAAGAAATA
320 G--AATTTTGAAAAGT-AAAATGAGTAGTGTATACA-TGTTGTTCTTGATTATGTGAAAGAAATA
* * * * ** * * * * *
913569 GCTTAAATAAGAGGCGTTTTTAGTACAACAATTAGGATAATTTCCTTCCAAACAAAAGACTCGAG
381 GTTTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGG
* * ** * * *
913634 TTCAACTCCTGGTAAACACAATTATGATAGTAAAAATTTAAGGCGAAAATGTTT-AAAAGTAAAA
446 TTCGACTCCTGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAAT-TTTGAAAAGTAAAA
* * *
913698 C-AAGTAGTGTATACGTGTTATTCGTTATTATGTGAAACAAATAGTGTCAAA-AAGAGGCATTTG
510 CGAA-TAGTGTATACCTGTTGTTC-TTATTATGTGAAACAAATAGTGT-AAAGAAGAGACATTTG
* * * *
913761 TAGTCCAACGCTTAGGATAATTGCCTTCCAAGCAATAAACTCGGGTTTGACTCACGAGAAATGAA
572 TAGTCCAACGCTTAGGATAATTACCTTCCAAGCAATAAACCCGGGTTCGACTCACGAGAAATG-T
* * * * * * *
913826 AATTACGTTTGTAAGAAATTAAAAGGAATTTTTTTAAAAGTAAAACGAG
636 AACTACGATAGTAAAAAATTAAAGGGAA-ATTTTGAAAAGTAAAACGAG
* ** * * * *
913875 TAGTGTATACGTGTTGTTCTTGATTACCTGAAACAAATAGTGTAAAGATGATGCGTTCGTAGTAC
1 TAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCC
* * * * *
913940 TACAGTTAGGATAATTGCCTTTCAATCAATAGACTCGGGTTCGACTCCCAACAAACGCAATTAGG
66 TACTGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCAGCAAACGCAATTACG
*
914005 ATAGTAAAAAATTAAGGGGAAAATATTGAAAAGTAAAACGAGTAATGTATACGTGTTGTTATTGA
131 ATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAATGTATACGTGTTGTTATTGA
* * *
914070 TTATGTGAAACAAATAGTGTAAAGAAGAG-G-TGTAGTCCAACGATTAGTATAATTTCCTTCCAA
196 TTATGTGAAACAAATAGTGTAAAGAAGAGTGTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAA
* * * * * * * *
914133 GAAATAGATTCGGGTTCGACTCCCGGTAAACACAATTACTATAGTTAAAGAATTAAGGGGAGTTG
261 GCAATAGACTCGGGTTCGACTCACGGCAAACGCAATTACAATAGTTAAAAAATTAAGGGGAATT-
* * * * * *
914198 TTGAAAAGTAAAATGAGTAGTGTATACATGTTATTATCGGTTATGTGAAACCAAATAGTTTAAGG
325 TTGAAAAGTAAAATGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAA-GAAATAGTTTAAAG
* *
914263 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGGCCCGGGTTCAACTC
389 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTC
*
914328 CTGGCAAATGCAATTATGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTG
454 CTGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTG
* **
914393 CATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGACATTTGTAGTCCAAC-C
519 TATACCTGTTGTTCTT-ATTATGTGAAACAAATAGTGTAAAGAAGAGACATTTGTAGTCCAACGC
* * * ** ** * * * * *
914457 ATTAGGATAATTGCCACTCCAAACTGTAGTCCCGGGTTCGACTCTCGAAAAATATAATTTCGATA
583 -TTAGGATAATTACC-TTCCAAGCAATAAACCCGGGTTCGACTCACGAGAAATGTAACTACGATA
* *
914522 GTAAAAAA-TAAAGTGGTAAATTTTGAATAGTAAAACGAA
646 GTAAAAAATTAAAG-GG-AAATTTTGAAAAGTAAAACGAG
* * * * * * * *
914561 TAGTTTTTACCAT-TTCTGCTTGATTATGTGAAACTAATACTGTAAAAAAGAGGCGTTTGTAATC
1 TAGTGTATA-CATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTC
* * * * * * * * ** *
914625 CTATTGTTAGGATAATTGTCTTGCAAGCAACAAACTCGGGTTTGAGTCCCGGCAAA-AAAATTAT
65 CTACTGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCAGCAAACGCAATTAC
* * * * ** *
914689 GATTGTAAAAAAATTAAGGGGAAAATTTTGAAAAATAAAACAAATAGTATATATATATATATATA
130 GATAGT-AAAAAATTAAGGGGAAAATTTTGAAAAGTAAAAC---GAG--TA-ATGTATACGTGT-
* * * * * *
914754 CCTTTTATGCTTGATAATAT-ATAACAAATAGTGTAAAGAGGAGT-TTTTAGTCCAACGGTTTGG
187 --TGTTA---TTGATTATGTGA-AACAAATAGTGTAAAGAAGAGTGTTGTAGTCCAACGGTTAGG
* * * * * * * *
914817 ATGAGTGCCTTCCAAGCAATAGGCTCTGGTTCGACTTACTGCAAATGCGATTACAATAG-TAAAA
246 ATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCACGGCAAACGCAATTACAATAGTTAAAA
* * * * * * * *
914881 TATTAAGGGGAAAATATAGAAAAGTAAAATAATTAG-CTATACTTTTTGTTCTTGATTATGTGAA
311 AATTAAGGGG--AATTTTGAAAAGTAAAATGAGTAGTGTATACATGTTGTTCTTGATTATGTGAA
* * * * * * *
914945 A-CAATACTGTAAAGAAGAGCCGTTTGTAGTCCAACTGTTAGGATAATTGCCTTCTAAGTAATAG
374 AGAAATAGTTTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAG
* ** * ** * * * * *
915009 GCCCTAGTTTGACTTTTGGAAAACGTAATTACGATAGTAAAAATTTAA-GGGAAAA-ATTGAAAA
439 ACCCGGGTTCGACTCCTGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAA
* * * ** **** *
915072 GTAAAATGAAAAGTGTATATCT-TTCGCGCTTAATTATGTGATTGGAATAGTGTAAAGAAGAGGC
504 GTAAAACGAATAGTGTATACCTGTT-GTTCTT-ATTATGTGAAACAAATAGTGTAAAGAAGAGAC
* * * * * * *
915136 GTTTGAAGTCCAACGGTTAGGATAATAACCTTCCAAGCAATAAACCCGGGTTCGACTCCCAACAA
567 ATTTGTAGTCCAACGCTTAGGATAATTACCTTCCAAGCAATAAACCCGGGTTCGACTCACGAGAA
** * * *
915201 ATGCGACTACGATAGTAAAAAATTAAGGGGAAATTTTAAAAAGTAAAAAGAG
632 ATGTAACTACGATAGTAAAAAATTAAAGGGAAATTTTGAAAAGTAAAACGAG
* * ** **
915253 TAGTGTATACATGTTTTTCTAGATTATGCAAAATGAATAGTGTAAAGAAGAGGCGTTTGTAGTCC
1 TAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCC
* * * * *
915318 -AGC-GATTATGATAATTTCCTTCCAAGCAATAGAGATCTGAGTTCGACTCCCAGCAAACACAAT
66 TA-CTG-TTAGGATAATTGCCTTCCAAGCAATAGA-CTC-GGGTTCGACTCCCAGCAAACGCAAT
* * * *
915381 TACGATAGTAAAAAATTAAGGGGAAAATGTTGAAAAGTAAAATGAGCAGTGTATACGTGTTG-TA
127 TACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAATGTATACGTGTTGTTA
* * *
915445 CTTGATTATGTGAATCAAATAGTTTAAAGAAGAG-GCATTTGTAGTCCAACGGTTTGGATAATTG
192 -TTGATTATGTGAAACAAATAGTGTAAAGAAGAGTG---TTGTAGTCCAACGGTTAGGATAATTG
* * * ** ***
915509 CCTTTCATA-CAATGGACTC-GGTTCGACTCTCGATAAATATAATAATTACAATA-TTAAAAAAT
253 CCTTCCA-AGCAATAGACTCGGGTTCGACTCACG-GCAA-A-CGCAATTACAATAGTTAAAAAAT
* * *
915571 TAAGGGAAAATTTTGAAAAGTAAAATGTGTA-TGTATACTTGTTGTTCTTGATTATGTGAAAGAA
314 TAAGGG-GAATTTTGAAAAGTAAAATGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAAGAA
** * * *
915635 ATA-TTGGGAATAAGAGGCATTTGTAGTCCAATGGTTAGGATAATTGCCTTCCAAGCAATAGACC
378 ATAGTT-TAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACC
* * * *
915699 TGGGTTCGACTCCT-AC-AATCGCAA-TA--ATA--AAATAATTAAGGGGAAAATTTTAAAAAGT
442 CGGGTTCGACTCCTGGCAAAT-GCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGT
* * ** * * * * **
915757 AAAACGAATAGTGTAAACCTTTTGTGGTTGATTATGTGAAATGAAGAAAATGTAAAGAAGATATG
506 AAAACGAATAGTGTATACCTGTTGTTCTT-ATTATGTGAAA-CAA-ATAGTGTAAAGAAGAGACA
* * * * *
915822 TTTGTAGTCCAATGGTTAGGATAATTACCTTCCAAGCAATAGAA-CCGGGTTTGACTCATG-GCT
568 TTTGTAGTCCAACGCTTAGGATAATTACCTTCCAAGCAATA-AACCCGGGTTCGACTCACGAG-A
*
915885 AATGTAACTACGATAGTAAAAAATTAAGGGGAAATTTTTGAAAAGTAAAACGAG
631 AATGTAACTACGATAGTAAAAAATTAAAGGGAAA-TTTTGAAAAGTAAAACGAG
* * **
915939 TAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTTTGAAGAAGAGATGTTTGTAGTCC
1 TAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCC
* * * * * *
916004 AATTGTTAGGATAATTGCCTTCGAATCAATAGACTCGGGCTT-GAGTCCCAGCAAATG-AATTAC
66 TACTGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGG-TTCGACTCCCAGCAAACGCAATTAC
* * * * *
916067 GATTGTAAAAAATTAAGGGG-AAA-TTTAAAAAGTAAAACGAATAGTGTATACGTGTTGTTCTTG
130 GATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAATGTATACGTGTTGTTATTG
* * *
916130 ATTATGTGAAAGAAATAGTGTTAATAAGAGGTGTTTGTAGTCCAACGGTTAGGATAATTGCCTTC
195 ATTATGTGAAACAAATAGTGTAAAGAAGA-GTG-TTGTAGTCCAACGGTTAGGATAATTGCCTTC
* * * * * *
916195 TAAGCAATAGACCCGGGTTCGACTCATGGCAAACGC-ATTCAAAATA-ATAACATTAATTAAGGG
258 CAAGCAATAGACTCGGGTTCGACTCACGGCAAACGCAATT-ACAATAGTTAA-A-AAATTAAGGG
* * * * * * * * * *
916258 TAAAATTTTAAAAAGTAAAACGAATAATGTAAACCTTTTGTGCTTGATTATGTGAAATGAATAAA
320 --GAATTTTGAAAAGTAAAATGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAA-GAA-ATA
** * * * **
916323 G--TAAAGAAGTTGCGTTTCTAGTCGAACGGTTAGGATAATTACCTTCCAAGCAATAGACCAAGG
381 GTTTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGG
* * * *
916386 TTTGACTCCTGGCTAATGCAATTACGATAGTAAAAAATTAAGCGGAAATTTTTGAAAAGTAAAAC
446 TTCGACTCCTGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAAC
* * * * ** *
916451 GAGTAGTGTATACATGTTGTTCTATATTATGTGAAACGAATAGTGTAAAGAATATG-TGTTTCTA
511 GAATAGTGTATACCTGTTGTTCT-TATTATGTGAAACAAATAGTGTAAAGAAGA-GACATTTGTA
** ** * * * * ** * ***
916515 GTGTAACTATTAGGTTAATTTCTTTCCAAGCAAT-ACCCCGGGTTTTACTCCCG-GCAAAAAAAA
574 GTCCAACGCTTAGGATAATTACCTTCCAAGCAATAAACCCGGGTTCGACTCACGAG-AAATGTAA
* * *
916578 TTATGACAGTAAAAAATT-AAGGGAAAAATTTTGAAAAGTAAAACGAG
638 CTACGATAGTAAAAAATTAAAGGG--AAATTTTGAAAAGTAAAACGAG
* * * * * * * * *
916625 TAGTTTGTACGTGTTGTTCTTGATTGTTTGAAACAAATAGTTTAAATAAGAGCCCTTTGTAGTCC
1 TAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCC
* * * * * ** * * * * * * *
916690 AACGGTTTGGATAATTACCTTTCTTGAAATGGAC-CAGGGTTCGACTCTCGGTAAATGTAATTAC
66 TACTGTTAGGATAATTGCCTTCCAAGCAATAGACTC-GGGTTCGACTCCCAGCAAACGCAATTAC
* * * * * * * * **
916754 GATATTAAAATATTAAGGGGAAATTTTTGAAATGTAAAATGAATAGTATTTAT-C-TTTTGTGCT
130 GATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTA--ATGTATACGTGTTGTTAT
** * *
916817 TGATTATGTGAAATGAATTGTGTAGAGAAGA-----G--G-----C-GTTA-G-T-A--G---T-
193 TGATTATGTGAAACAAATAGTGTAAAGAAGAGTGTTGTAGTCCAACGGTTAGGATAATTGCCTTC
* ** * ** * * * * *
916860 CTA--AA-A-AC-C----T---C-C-CGAAACACGTTATTACGATAGTAAAAAATTAAAGGGAAA
258 CAAGCAATAGACTCGGGTTCGACTCACGGCAAACGCAATTACAATAGTTAAAAAATTAAGGG-GA
* * ** * *
916911 ATTTTAAAAAGTAAAACGAGTAGT-TATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAA
322 ATTTTGAAAAGTAAAATGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAAGAAATAGTTTAA
* ** ** * *
916975 AGAAGAGACGTTTGTAGTCCAACCATTAGGATAATTGCACATTCCAAATAGTAGATCCGGGTTCG
387 AGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGC-C-TTCCAAGCAATAGACCCGGGTTCG
* * * * * * * *
917040 ACTTGC-GGAAAATTCAATTTCGATAGTAAAAAATTATGTGGTAAATTTTGAAAAGGAAAACGAA
450 AC-TCCTGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAA
* * * * * *
917104 TAGT-TTTACCAT-TTGTGCTTGATTATGTGAAACTAATACTGTAAAGAAGAGGCGTTTGTAGT-
514 TAGTGTATACC-TGTTGTTCTT-ATTATGTGAAACAAATAGTGTAAAGAAGAGACATTTGTAGTC
* * * * * * * *
917166 CATACTG-TTAGGATAATTTCCTTACAAGCAATAAACCCGGGTTTGAGTC-CCAGCAAAAGAAAT
577 CA-AC-GCTTAGGATAATTACCTTCCAAGCAATAAACCCGGGTTCGACTCACGAG-AAATGTAAC
* * * *
917229 TACGATTA-TAAAAAATTAAGGGGAAATTTTGAAAAATAAAACAAA
639 TACGA-TAGTAAAAAATTAAAGGGAAATTTTGAAAAGTAAAACGAG
* * * * * ** * *
917274 TAGTATATATATACCTTTTATGCTTGATAAAATGAAACAAATAGTGTAAAGATGA---GTTTTTA
1 TAGTGTATACAT--GTTGT-T-CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTA
* * * * ** * * *
917336 GTCCAACGGTTAGGATGATTGCCTTCCAAGAAATAGACTCTAGTTCGACTTCCTGCAAATGCAAT
62 GTCCTACTGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCAGCAAACGCAAT
* * * * * * * * * *
917401 TACAATAGTAAAATATTAAGTGGAAAATTTGGAAAAGTAAGACGATTAACGTAAATC-TTTTATT
127 TACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAATGTATA-CGTGTTGTT
* * * * * *
917465 CTTAATTATGTGAAACGAATATTGTAAAGAAGAG-GCATTTGTAGTCAAACTGTTAGGATAAATT
191 ATTGATTATGTGAAACAAATAGTGTAAAGAAGAGTG---TTGTAGTCCAACGGTTAGGAT-AATT
* * * * ** * * * * * * *
917529 -CTTTCCAAGC-ATAGGCCCGAGTTTAACTTC-TGGAAAACGCAATCACGATTG-TAAAAAGTTC
252 GCCTTCCAAGCAATAGACTCGGGTTCGAC-TCACGGCAAACGCAATTACAATAGTTAAAAAATTA
** * * * * * *
917590 AGGGGAAAATTTTGAAAAGTAAAAAAAAAATAGTATATACCTTTTG-TGTTGATTATGTGAAACA
316 AGGGG--AATTTTGAAAAGT--AAAATGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAAGA
* * * * *
917654 AATAGTTT-AAGAAAATG-GTGTT-TAGTTCAACGGTTAGGATGATTGCCTTCCAAGCAATAAAC
377 AATAGTTTAAAGAAGAGGCGT-TTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGAC
* * * * * **
917716 CCGGGTTCGACTCACT-GCAAATGCAATTACAATAATAAAATATTAAGGGGAGATTTTTGAAATT
441 CCGGGTTCGACTC-CTGGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAG
917780 TAAAACGAATA
505 TAAAACGAATA
917791 ATGTTAAATA
Statistics
Matches: 6206, Mismatches: 1481, Indels: 833
0.73 0.17 0.10
Matches are distributed among these distances:
646 3 0.00
647 2 0.00
648 62 0.01
649 122 0.02
650 242 0.04
651 21 0.00
652 7 0.00
653 27 0.00
656 1 0.00
657 1 0.00
659 1 0.00
660 1 0.00
661 2 0.00
662 1 0.00
663 2 0.00
664 1 0.00
665 5 0.00
666 2 0.00
667 1 0.00
669 2 0.00
671 1 0.00
672 2 0.00
673 31 0.00
674 198 0.03
675 18 0.00
676 146 0.02
677 16 0.00
678 18 0.00
679 43 0.01
680 51 0.01
681 199 0.03
682 146 0.02
683 310 0.05
684 51 0.01
685 395 0.06
686 944 0.15
687 303 0.05
688 423 0.07
689 290 0.05
690 251 0.04
691 95 0.02
692 356 0.06
693 192 0.03
694 266 0.04
695 47 0.01
696 164 0.03
697 5 0.00
698 63 0.01
699 77 0.01
700 8 0.00
701 6 0.00
702 14 0.00
703 6 0.00
704 29 0.00
705 18 0.00
706 5 0.00
707 2 0.00
708 5 0.00
710 1 0.00
715 2 0.00
716 2 0.00
717 4 0.00
718 3 0.00
719 2 0.00
720 2 0.00
722 1 0.00
723 9 0.00
725 1 0.00
726 12 0.00
728 5 0.00
729 2 0.00
730 1 0.00
731 33 0.01
732 5 0.00
733 15 0.00
734 2 0.00
735 6 0.00
737 2 0.00
738 2 0.00
740 2 0.00
741 1 0.00
742 3 0.00
745 6 0.00
746 1 0.00
747 9 0.00
748 113 0.02
749 66 0.01
750 10 0.00
751 7 0.00
752 12 0.00
753 6 0.00
754 85 0.01
755 70 0.01
756 3 0.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (683 bp):
TAGTGTATACATGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCC
TACTGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCAGCAAACGCAATTACG
ATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAATGTATACGTGTTGTTATTGA
TTATGTGAAACAAATAGTGTAAAGAAGAGTGTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAA
GCAATAGACTCGGGTTCGACTCACGGCAAACGCAATTACAATAGTTAAAAAATTAAGGGGAATTT
TGAAAAGTAAAATGAGTAGTGTATACATGTTGTTCTTGATTATGTGAAAGAAATAGTTTAAAGAA
GAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCT
GGCAAATGCAATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGTA
TACCTGTTGTTCTTATTATGTGAAACAAATAGTGTAAAGAAGAGACATTTGTAGTCCAACGCTTA
GGATAATTACCTTCCAAGCAATAAACCCGGGTTCGACTCACGAGAAATGTAACTACGATAGTAAA
AAATTAAAGGGAAATTTTGAAAAGTAAAACGAG
Found at i:916834 original size:515 final size:511
Alignment explanation
Indices: 913242--916834 Score: 2154
Period size: 517 Copynumber: 7.0 Consensus size: 511
913232 GAGGCACTTG
* * * * * * *
913242 TAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCACGGCAAACGCA
1 TAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGAACCAGGTTTGACTCATGGCTAATGCA
* * * * * * *
913307 A-TGACAATAGTAAAAAAGTAAGGGGAAA-TTTTAAAAAGTAGAACGAGTATTGTATATGTATTG
66 ACT-ACGATAGTAAAAAATTAAGCGGAAATTTTTGAAAAGTAAAACGAGTAGTGTATA--CA-TG
* * * * * * **
913370 TTCTTGATTGATTATGTGAATCAAATAGTGTAAAGACGAGGTGTTTGTAGTCCAACGGTTAGGAT
127 TTGTT-CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGATGTTTCTAGTCCAACTATTAGGAT
* * * * * * ** * **
913435 AATTGCCTTTCAATCGATATACTCGGG-TTCGACTCCCAACAAAGGTAATTATGATGGTAAAAAA
191 AATTGCCTTCCAAGCAATAGACCCGGGCTT-GACTCCCAGCAAA-AAAATTACGACAGTAAAAAA
* * * * * *
913499 TTAAGGGGAAAATGTTGGAAAGTGAAACTAGTAGTGTATAAGTGTTGTTCTTGTTTATGTGAAAG
254 TTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAAG
* * * * ** * * * * *
913564 AAATAGCTTAAATAAGAGGCGTTTTTAGTACAACAATTAGGATAATTTCCTTCCAAACAAAAGAC
318 AAATAG-TTTAATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTTCTAGCAATAGAC
* * ** * *
913629 TC-GAGTTCAACTC-CTGGTAAACACAATTATGATAGTAAAA-ATTTAAGGCGAAAATGTTT-AA
382 -CAGGGTTCGACTCTC-GGTAAA-TGAATTA--ATA-TAAAATAATTAAGGGGAAAAT-TTTAAA
* * * * * ** *
913690 AAGTAAAAC-AAGTAGTGTATACGTGTTATTCGTT-ATTATGTGAAACAAAT-AGTGTCAAA-AA
440 AAGTAAAACGAA-TAGTGTAAACCTTTTGTGC-TTGATTATGTGAAATGAATAAATGT-AAAGAA
** * *
913751 GAGGCATTTG
502 GATACGTTTC
* * * * *
913761 TAGTCCAACGCTTAGGATAATTGCCTTCCAAGCAATA-AACTCGGGTTTGACTCACGAG-AAATG
1 TAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGAAC-CAGGTTTGACTCATG-GCTAATG
* * * * * ** * * *
913824 AAAATTACGTTTGTAAGAAATTAAAAGGAATTTTTTTAAAAGTAAAACGAGTAGTGTATACGTGT
64 -CAACTACGATAGTAAAAAATTAAGCGGAAATTTTTGAAAAGTAAAACGAGTAGTGTATACATGT
** * * * *
913889 TGTTCTTGATTACCTGAAACAAATAGTGTAAAG-A-TGATGCGTTCGTAGTACTAC-AGTTAGGA
128 TGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGATG-TTTC-TAGTCCAACTA-TTAGGA
* * * * ** * *
913951 TAATTGCCTTTCAATCAATAGACTCGGG-TTCGACTCCCAACAAACGCAATTAGGATAGTAAAAA
190 TAATTGCCTTCCAAGCAATAGACCCGGGCTT-GACTCCCAGCAAA-AAAATTACGACAGTAAAAA
* * *
914015 ATTAAGGGGAAAATATTGAAAAGTAAAACGAGTAATGTATACGTGTTGTTATTGATTATGTGAAA
253 ATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAA
* * * * * * * * *
914080 CAAATAGTGTAAAGAAGAGG----TGTAGTCCAACGATTAGTATAATTTCCTTCCAAGAAATAGA
317 GAAATAGT-TTAATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTTCTAGCAATAGA
* * ** * * * *
914141 TTC-GGGTTCGACTCCCGGTAAACACAATTACTATAGTTAAAGAATTAAGGGG--AGTTGTTGAA
381 -CCAGGGTTCGACTCTCGGTAAA-TGAATTA--ATA-TAAAATAATTAAGGGGAAAATT-TTAAA
* * * * * * ** * * ** * * *
914203 AAGTAAAATGAGTAGTGTATACATGTTATTATCGGTTATGTGAAACCAA-ATAGTTTAAGGAAGA
440 AAGTAAAACGAATAGTGTAAACCTTTTGTGCTTGATTATGTGAAATGAATA-AATGTAAAGAAGA
** *
914267 GGCGTTTG
504 TACGTTTC
* ** * ** * *
914275 TAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGGCCCGGGTTCAACTCCTGGCAAATGCA
1 TAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGAACCAGGTTTGACTCATGGCTAATGCA
* * * * * * **
914340 ATTATGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAATAGTGCATAGGTGTTGT
66 ACTACGATAGTAAAAAATTAAGCGGAAATTTTTGAAAAGTAAAACGAGTAGTGTATACATGTTGT
** * *
914405 TCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGACATTTGTAGTCCAACCATTAGGATAATTG
131 TCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGATGTTTCTAGTCCAACTATTAGGATAATTG
* * ** * * * * * *
914470 CCACTCCAAACTGTAGTCCCGGG-TTCGACTCTC-GAAAAATATAATTTCGATAGTAAAAAATAA
196 CC-TTCCAAGCAATAGACCCGGGCTT-GACTCCCAGCAAAA-A-AATTACGACAGTAAAAAATTA
* * * * * * * * **
914533 AGTGGTAAATTTTGAATAGTAAAACGAATAGTTTTTACCAT-TTCTGCTTGATTATGTGAAACTA
257 AG-GGAAAATTTTGAAAAGTAAAACGAGTAGTGTATA-CGTGTTGTTCTTGATTATGTGAAAGAA
* * * * * * ** * * * * *
914597 ATACTGTAAAAAAGAGGCGTTTGTAATCCTATTGTTAGGATAATTGTCTTGCAAGCAACAAACTC
320 ATAGT-TTAATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTTCTAGCAATAGAC-C
* * * * ** * *
914662 -GGGTTTGAGTCCCGGCAAAAAAATTATGATTGTAAAAAAATTAAGGGGAAAATTTTGAAAAA-T
383 AGGGTTCGACTCTCGGTAAATGAATTA--A-TATAAAATAATTAAGGGGAAAATTTT-AAAAAGT
* * * * * ** *
914725 AAAACAAATAGTATATATATATATATATACCTTTTATGCTTGATAATAT-ATAACAAAT-AGTGT
444 AAAAC-----G---A-ATA-GTGTA-A-ACCTTTTGTGCTTGATTATGTGA-AATGAATAAATGT
* *
914788 AAAG-AG-GA-GTTTT
496 AAAGAAGATACGTTTC
* * * * * * * * *
914801 TAGTCCAACGGTTTGGATGAGTGCCTTCCAAGCAATAG-GCTCTGGTTCGACTTACT-GCAAATG
1 TAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGAAC-CAGGTTTGACTCA-TGGCTAATG
* * * * * * * * ** * * * *
914864 CGATTACAATAGTAAAATATTAAGGGGAAAATATAGAAAAGTAAAATAATTAG-CTATACTTTTT
64 CAACTACGATAGTAAAAAATTAAGCGGAAATTTTTGAAAAGTAAAACGAGTAGTGTATACATGTT
* ** * *
914928 GTTCTTGATTATGTGAAAC-AATACTGTAAAGAAGAGCCGTTTGTAGTCCAACTGTTAGGATAAT
129 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGATGTTTCTAGTCCAACTATTAGGATAAT
* * * ** * *** * * * *
914992 TGCCTTCTAAGTAATAGGCCCTAGTTTGACT-TTTGGAAAACGTAATTACGATAGTAAAAATTTA
194 TGCCTTCCAAGCAATAGACCCGGGCTTGACTCCCAGCAAAA--AAATTACGACAGTAAAAAATTA
* * ** ** * ** *
915056 AGGGAAAA-ATTGAAAAGTAAAATGAAAAGTGTATATC-T-TTCGCGCTTAATTATGTGATTGGA
257 AGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATA-CGTGTT-GTTCTTGATTATGTGAAAGAA
* * * * ** * * * *
915118 ATAGTGTAAAGAAGAGGCGTTTGAAGTCCAACGGTTAGGATAATAACCTTCCAAGCAATAAACCC
320 ATAGT-TTAATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTTCTAGCAATAGACCA
* *** * *
915183 GGGTTCGACTCCCAACAAATGCGACTACGATAGTAAAA-AATTAAGGGG-AAATTTTAAAAAGTA
384 GGGTTCGACTCTCGGTAAATG-AATTA--ATA-TAAAATAATTAAGGGGAAAATTTTAAAAAGTA
* * * * * * ** * **
915246 AAAAGAGTAGTGTATACATGTTT-TTCTAGATTATGCAAAATGAAT-AGTGTAAAGAAGAGGCGT
445 AAACGAATAGTGTAAACCT-TTTGTGCTTGATTATGTGAAATGAATAAATGTAAAGAAGATACGT
*
915309 TTG
509 TTC
* * * * * * * *** * **
915312 TAGTCCAGCGATTATGATAATTTCCTTCCAAGCAATAGAGATCTGAGTTCGACTCCCAGCAAACA
1 TAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGA-ACCAG-GTTTGACTCATGGCTAATG
* * * * * * *
915377 CAATTACGATAGTAAAAAATTAAGGGGAAAATGTTGAAAAGTAAAATGAGCAGTGTATACGTGTT
64 CAACTACGATAGTAAAAAATTAAGCGGAAATTTTTGAAAAGTAAAACGAGTAGTGTATACATGTT
* * * *** * ** *
915442 GTACTTGATTATGTGAATCAAATAGTTTAAAGAAGAGGCATTTGTAGTCCAACGGTTTGGATAAT
129 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGATGTTTCTAGTCCAACTATTAGGATAAT
* * * * ** * * *
915507 TGCCTTTCATA-CAATGGACTC-GG-TTCGACTCTCGATAAATATAATAATTACAATATTAAAAA
194 TGCCTTCCA-AGCAATAGACCCGGGCTT-GACTC-CCAGCAA-A-AA-AATTACGACAGTAAAAA
* * *
915569 ATTAAGGGAAAATTTTGAAAAGTAAAATGTGTA-TGTATACTTGTTGTTCTTGATTATGTGAAAG
253 ATTAAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAAG
* * * *
915633 AAATA-TTGGGAATAAGAGGCATTTGTAGTCCAATGGTTAGGATAATTGCCTTCCAAGCAATAGA
318 AAATAGTT--TAATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTTCTAGCAATAGA
*
915697 CCTGGGTTCGACTC-C--TACAATCGCAA-T-A-ATAAAATAATTAAGGGGAAAATTTTAAAAAG
381 CCAGGGTTCGACTCTCGGTA-AAT-G-AATTAATATAAAATAATTAAGGGGAAAATTTTAAAAAG
* * *
915756 TAAAACGAATAGTGTAAACCTTTTGTGGTTGATTATGTGAAATGAAGAAAATGTAAAGAAGATAT
443 TAAAACGAATAGTGTAAACCTTTTGTGCTTGATTATGTGAAATGAA-TAAATGTAAAGAAGATAC
*
915821 GTTTG
507 GTTTC
* * *
915826 TAGTCCAATGGTTAGGATAATTACCTTCCAAGCAATAGAACCGGGTTTGACTCATGGCTAATGTA
1 TAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGAACCAGGTTTGACTCATGGCTAATGCA
*
915891 ACTACGATAGTAAAAAATTAAGGGGAAATTTTTGAAAAGTAAAACGAGTAGTGTATACATGTTGT
66 ACTACGATAGTAAAAAATTAAGCGGAAATTTTTGAAAAGTAAAACGAGTAGTGTATACATGTTGT
* * * * *
915956 TCTTGATTATGTGAAACAAATAGTTTGAAGAAGAGATGTTTGTAGTCCAATTGTTAGGATAATTG
131 TCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGATGTTTCTAGTCCAACTATTAGGATAATTG
* * * * ** **
916021 CCTTCGAATCAATAGACTCGGGCTTGAGTCCCAGCAAATGAATTACGATTGTAAAAAATTAAGGG
196 CCTTCCAAGCAATAGACCCGGGCTTGACTCCCAGCAAAAAAATTACGACAGTAAAAAATTAAGGG
* * *
916086 GAAA-TTTAAAAAGTAAAACGAATAGTGTATACGTGTTGTTCTTGATTATGTGAAAGAAATAGTG
261 AAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAAGAAATAGT-
** *
916150 TTAATAAGAGGTGTTTGTAGTCCAACGGTTAGGATAATTGCC-TTCTAAGCAATAGACCCGGGTT
325 TTAATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTTCT-AGCAATAGACCAGGGTT
* * * * *
916214 CGACTCAT-GGCAAACGCATTCAAAATAATAACATTAATTAAGGGTAAAATTTTAAAAAGTAAAA
389 CGACTC-TCGGTAAATGAATT---AAT-ATAA-AATAATTAAGGGGAAAATTTTAAAAAGTAAAA
* * *
916278 CGAATAATGTAAACCTTTTGTGCTTGATTATGTGAAATGAATAAA-GTAAAGAAGTTGCGTTTC
448 CGAATAGTGTAAACCTTTTGTGCTTGATTATGTGAAATGAATAAATGTAAAGAAGATACGTTTC
* *
916341 TAGTCGAACGGTTAGGATAATTACCTTCCAAGCAATAG-ACCAAGGTTTGACTCCTGGCTAATGC
1 TAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGAACC-AGGTTTGACTCATGGCTAATGC
*
916405 AATTACGATAGTAAAAAATTAAGCGGAAATTTTTGAAAAGTAAAACGAGTAGTGTATACATGTTG
65 AACTACGATAGTAAAAAATTAAGCGGAAATTTTTGAAAAGTAAAACGAGTAGTGTATACATGTTG
* * ** *
916470 TTCTAT-ATTATGTGAAACGAATAGTGTAAAGAATATG-TGTTTCTAGTGTAACTATTAGGTTAA
130 TTCT-TGATTATGTGAAACAAATAGTGTAAAGAAGA-GATGTTTCTAGTCCAACTATTAGGATAA
* * * * * * *
916533 TTTCTTTCCAAGCAATA-CCCCGGGTTTTACTCCCGGCAAAAAAAATTATGACAGTAAAAAATTA
193 TTGCCTTCCAAGCAATAGACCCGGGCTTGACTCCCAGC-AAAAAAATTACGACAGTAAAAAATTA
* * * * *
916597 AGGGAAAAATTTTGAAAAGTAAAACGAGTAGTTTGTACGTGTTGTTCTTGATTGTTTGAAACAAA
257 AGGG-AAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAAGAAA
* * * * * * *
916662 TAGTTTAAATAAGAGCCCTTTGTAGTCCAACGGTTTGGATAATTACCTTTCTTGAAATGGACCAG
321 TAGTTT-AATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTTCTAGCAATAGACCAG
* * *
916727 GGTTCGACTCTCGGTAAATGTAATTACGATATTAAAAT-ATTAAGGGGAAATTTTTGAAATGTAA
385 GGTTCGACTCTCGGTAAATG-AATTA--ATA-TAAAATAATTAAGGGGAAAATTTTAAAAAGTAA
* * ** *
916791 AATGAATAGTATTTATCTTTTGTGCTTGATTATGTGAAATGAAT
446 AACGAATAGTGTAAACCTTTTGTGCTTGATTATGTGAAATGAAT
916835 TGTGTAGAGA
Statistics
Matches: 2468, Mismatches: 482, Indels: 252
0.77 0.15 0.08
Matches are distributed among these distances:
508 43 0.02
509 126 0.05
510 12 0.00
511 57 0.02
512 203 0.08
513 285 0.12
514 285 0.12
515 346 0.14
516 30 0.01
517 488 0.20
518 88 0.04
519 66 0.03
520 36 0.01
521 139 0.06
522 16 0.01
523 41 0.02
524 46 0.02
525 26 0.01
526 100 0.04
527 4 0.00
528 5 0.00
529 8 0.00
530 18 0.01
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.30
Consensus pattern (511 bp):
TAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGAACCAGGTTTGACTCATGGCTAATGCA
ACTACGATAGTAAAAAATTAAGCGGAAATTTTTGAAAAGTAAAACGAGTAGTGTATACATGTTGT
TCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGATGTTTCTAGTCCAACTATTAGGATAATTG
CCTTCCAAGCAATAGACCCGGGCTTGACTCCCAGCAAAAAAATTACGACAGTAAAAAATTAAGGG
AAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAAGAAATAGTT
TAATAAGAGGCATTTGTAGTCCAACGGTTAGGATAATTGCCTTTCTAGCAATAGACCAGGGTTCG
ACTCTCGGTAAATGAATTAATATAAAATAATTAAGGGGAAAATTTTAAAAAGTAAAACGAATAGT
GTAAACCTTTTGTGCTTGATTATGTGAAATGAATAAATGTAAAGAAGATACGTTTC
Found at i:916992 original size:133 final size:134
Alignment explanation
Indices: 916749--916993 Score: 312
Period size: 133 Copynumber: 1.8 Consensus size: 134
916739 GGTAAATGTA
* * * * * * * * * *
916749 ATTACGATATTAAAATATTAAGGGGAAATTTTTGAAATGTAAAATGAATAGTATTTATCTTTTGT
1 ATTACGATAGTAAAAAATTAAAGGGAAAATTTTAAAAAGTAAAACGAATAGTATATAGCTGTTGT
** * * *
916814 GCTTGATTATGTGAAATGAATTGTGTAGAGAAGAGGCGTTAGTAGTCTAAAAACCTCCCGAAACA
66 GCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGACGTTAGTAGTCTAAAAACCTCCCGAAACA
916879 CGTT
131 CGTT
* *
916883 ATTACGATAGTAAAAAATTAAAGGGAAAATTTTAAAAAGTAAAACGAGTAGT-TATAGGTGTTGT
1 ATTACGATAGTAAAAAATTAAAGGGAAAATTTTAAAAAGTAAAACGAATAGTATATAGCTGTTGT
* *
916947 TCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGACGTTTGTAGTC
66 GCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGACGTTAGTAGTC
916994 CAACCATTAG
Statistics
Matches: 92, Mismatches: 19, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
133 48 0.52
134 44 0.48
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.33
Consensus pattern (134 bp):
ATTACGATAGTAAAAAATTAAAGGGAAAATTTTAAAAAGTAAAACGAATAGTATATAGCTGTTGT
GCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGACGTTAGTAGTCTAAAAACCTCCCGAAACA
CGTT
Found at i:917154 original size:306 final size:305
Alignment explanation
Indices: 916585--917166 Score: 732
Period size: 306 Copynumber: 1.9 Consensus size: 305
916575 AAATTATGAC
* *
916585 AGTAAAAAATTAAGGGAAAAATTTTGAAAAGTAAAACGAGTAGTTTGTACGTGTTGTTCTTGATT
1 AGTAAAAAATTAAGGGAAAAATTTTAAAAAGTAAAACGAGTAGTTTATACGTGTTGTTCTTGATT
* * * * * ** * *
916650 GTTTGAAACAAATAGTTTAAATAAGAGCCCTTTGTAGTCCAACGGTTTGGATAATTACCTTTCTT
66 ATGTGAAACAAATAGTGTAAAGAAGAGACCTTTGTAGTCCAACCATTAGGATAATTACCATTC-T
* * * *
916715 GAAATGGACCAGGGTTCGACTCTCGGTAAATGTAATTACGATATTAAAATATTAAGGGGAAATTT
130 CAAATGGACCAGGGTTCGACTCTCGGAAAATGTAATTACGATAGTAAAAAATTAAGGGGAAATTT
* * * * * ** *
916780 TTGAAATGTAAAATGAATAGTATTTATCTTTTGTGCTTGATTATGTGAAATGAATTGTGTAGAGA
195 TTGAAAAGGAAAACGAATAGTATTTACCATTTGTGCTTGATTATGTGAAATGAATACTGTAAAGA
916845 AGAGGCGTTAGTAGTCTAAAAACCTCCCGAAACACGTTATTACGAT
260 AGAGGCGTTAGTAGTCTAAAAACCTCCCGAAACACGTTATTACGAT
*
916891 AGTAAAAAATTAAAGGG-AAAATTTTAAAAAGTAAAACGAGTAG-TTATAGGTGTTGTTCTTGAT
1 AGTAAAAAATT-AAGGGAAAAATTTTAAAAAGTAAAACGAGTAGTTTATACGTGTTGTTCTTGAT
* *
916954 TATGTGAAACAAATAGTGTAAAGAAGAGACGTTTGTAGTCCAACCATTAGGATAATTGCACATTC
65 TATGTGAAACAAATAGTGTAAAGAAGAGACCTTTGTAGTCCAACCATTAGGATAATTAC-CATTC
* *
917019 -CAAATAGTAGATCC-GGGTTCGACT-TGCGGAAAAT-TCAATTTCGATAGTAAAAAATTATGTG
129 TCAAAT-G--GA-CCAGGGTTCGACTCT-CGGAAAATGT-AATTACGATAGTAAAAAATTAAG-G
*
917080 GTAAA-TTTTGAAAAGGAAAACGAATAGT-TTTACCATTTGTGCTTGATTATGTGAAACT-AATA
187 GGAAATTTTTGAAAAGGAAAACGAATAGTATTTACCATTTGTGCTTGATTATGTGAAA-TGAATA
*
917142 CTGTAAAGAAGAGGCGTTTGTAGTC
251 CTGTAAAGAAGAGGCGTTAGTAGTC
917167 ATACTGTTAG
Statistics
Matches: 236, Mismatches: 30, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
304 4 0.02
305 68 0.29
306 93 0.39
307 64 0.27
308 7 0.03
ACGTcount: A:0.37, C:0.10, G:0.21, T:0.32
Consensus pattern (305 bp):
AGTAAAAAATTAAGGGAAAAATTTTAAAAAGTAAAACGAGTAGTTTATACGTGTTGTTCTTGATT
ATGTGAAACAAATAGTGTAAAGAAGAGACCTTTGTAGTCCAACCATTAGGATAATTACCATTCTC
AAATGGACCAGGGTTCGACTCTCGGAAAATGTAATTACGATAGTAAAAAATTAAGGGGAAATTTT
TGAAAAGGAAAACGAATAGTATTTACCATTTGTGCTTGATTATGTGAAATGAATACTGTAAAGAA
GAGGCGTTAGTAGTCTAAAAACCTCCCGAAACACGTTATTACGAT
Found at i:917757 original size:342 final size:344
Alignment explanation
Indices: 917125--917762 Score: 842
Period size: 342 Copynumber: 1.9 Consensus size: 344
917115 TTTGTGCTTG
* * * *
917125 ATTATGTGAAACTAATACTGTAAAGAAGAGGCGTTTGTAGTCATACTGTTAGGATAATTTCCTTA
1 ATTATGTGAAACGAATACTGTAAAGAAGAGGCATTTGTAGTCAAACTGTTAGGATAAATTCCTTA
* * * *
917190 CAAGCAATAAACCCGGGTTTGAGTCCCAGCAAAAGAAATTACGATTATAAAAAATTAAGGGGAAA
66 CAAGCAATAAACCCGAGTTTAACTCCCAGCAAAAGAAATCACGATTATAAAAAATTAAGGGGAAA
*
917255 TTTTGAAAAATAAAACAAATAGTATATATATACCTTTTATGCTTGATAAAATGAAACAAATAGTG
131 TTTTGAAAAATAAAACAAATAGAATATATATACCTTTTATGCTTGATAAAATGAAACAAATAGTG
* * * * *
917320 TAAAGATGAGTTTTTAGTCCAACGGTTAGGATGATTGCCTTCCAAGAAATAGACTCTAGTTCGAC
196 TAAAAATGAGTGTTTAGTCCAACGGTTAGGATGATTGCCTTCCAAGAAATAAACCCGAGTTCGAC
*
917385 TTCCTGCAAATGCAATTACAATAGTAAAATATTAAGTGGAAAATTTGGAAAAGTAAGACGATTAA
261 TTCCTGCAAATGCAATTACAATAATAAAATATTAAGTGGAAAATTTGGAAAAGTAAGACGATTAA
917450 CGTAAATCTTTTATTCTTA
326 CGTAAATCTTTTATTCTTA
* * *
917469 ATTATGTGAAACGAATATTGTAAAGAAGAGGCATTTGTAGTCAAACTGTTAGGATAAATTCTTTC
1 ATTATGTGAAACGAATACTGTAAAGAAGAGGCATTTGTAGTCAAACTGTTAGGATAAATTCCTTA
** * * * * * * *
917534 CAAGC-ATAGGCCCGAGTTTAACT-TCTGGAAAACGCAATCACGATTGTAAAAAGTTCAGGGGAA
66 CAAGCAATAAACCCGAGTTTAACTCCCAGCAAAA-GAAATCACGATTATAAAAAATTAAGGGG-A
* * * **
917597 AATTTTGAAAAGTAAAA-AAA-A-AATAGTATATACCTTTTGTG-TTGATTATGTGAAACAAATA
129 AATTTTGAAAAATAAAACAAATAGAATA-TATATACCTTTTATGCTTGATAAAATGAAACAAATA
* * * *
917658 GTTTAAGAAAATG-GTGTTTAGTTCAACGGTTAGGATGATTGCCTTCCAAGCAATAAACCCGGGT
193 GTGT-A-AAAATGAGTGTTTAGTCCAACGGTTAGGATGATTGCCTTCCAAGAAATAAACCCGAGT
917722 TCGAC-TCACTGCAAATGCAATTACAATAATAAAATATTAAG
256 TCGACTTC-CTGCAAATGCAATTACAATAATAAAATATTAAG
917763 GGGAGATTTT
Statistics
Matches: 252, Mismatches: 36, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
341 25 0.10
342 103 0.41
343 44 0.17
344 80 0.32
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (344 bp):
ATTATGTGAAACGAATACTGTAAAGAAGAGGCATTTGTAGTCAAACTGTTAGGATAAATTCCTTA
CAAGCAATAAACCCGAGTTTAACTCCCAGCAAAAGAAATCACGATTATAAAAAATTAAGGGGAAA
TTTTGAAAAATAAAACAAATAGAATATATATACCTTTTATGCTTGATAAAATGAAACAAATAGTG
TAAAAATGAGTGTTTAGTCCAACGGTTAGGATGATTGCCTTCCAAGAAATAAACCCGAGTTCGAC
TTCCTGCAAATGCAATTACAATAATAAAATATTAAGTGGAAAATTTGGAAAAGTAAGACGATTAA
CGTAAATCTTTTATTCTTA
Found at i:918506 original size:172 final size:170
Alignment explanation
Indices: 918220--918785 Score: 571
Period size: 172 Copynumber: 3.3 Consensus size: 170
918210 TTCGTGCTCA
* * * * * * *
918220 ATTATGTGAAAGGAATAGTGTTAATAAGAGGTGATTGTACTCCAACGGTTAGGATAATTACCTTC
1 ATTATGTGAAA-GAATAATGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTATGATAATTACCTTC
* * * * *
918285 CAAGCATTAG-CCCAAGGTTTGACTCCCAACAAATGCAACTACGATAGTAAAAAATTAAGGGGAA
65 CAAGCAATAGACTC-AGGTTCGACTCCCAACAAATACAATTACGATAGTAAAAAATTAAGGGGAA
** * * *
918349 ATTTTTAAAAAGTAAAAACAGTGGTGTCTACATGTTGTTCTTG
129 ATTTTT-AAAAGTAAAATGAGTAGTGTATACGTGTTGTTCTTG
* * * *
918392 ATTATGTAAAATGAATAATGTAAATAAGAGGCGTTTGTAGTCCAACGATTATGATAATTTCCTTC
1 ATTATGTGAAA-GAATAATGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTATGATAATTACCTTC
** * *
918457 CAAGCAATAGACTCAGGTTCGACTCCCGGCAAACACAGTTACGATAGTAAAAAATTAAGGGGAAA
65 CAAGCAATAGACTCAGGTTCGACTCCCAACAAATACAATTACGATAGTAAAAAATTAAGGGG-AA
* *
918522 ATTTTTAACAGTAAAATGAGTAGTGTATACGTGTTATTCTTG
129 ATTTTTAAAAGTAAAATGAGTAGTGTATACGTGTTGTTCTTG
* * * * * * *
918564 ATTATGTGAAACAA-ATATCTTAAAGGATAGGCATTTGAAGTCCAACGGTT-TGGATAATTGCCT
1 ATTATGTGAAAGAATA-AT-GTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAT-GATAATTACCT
* ** * ** * ** ** * *
918627 TTCTTGCAATGGACTCAGGTTCGACTCTTAATAAATTTAATTAAAATATTAAAAAATTAAGAGGA
63 TCCAAGCAATAGACTCAGGTTCGACTCCCAACAAATACAATTACGATAGTAAAAAATTAAGGGGA
*
918692 AATTTTGAAAAGTAAAATGAGTAGTGTATACGTGTTGTTCTTG
128 AATTTTTAAAAGTAAAATGAGTAGTGTATACGTGTTGTTCTTG
* *
918735 ATTATGTGAAAGAAATAGTGTGAAAGAAGGGGCGTTTGTAGTCCAACGGTT
1 ATTATGTGAAAG-AATAATGT-AAAGAAGAGGCGTTTGTAGTCCAACGGTT
918786 GGGGAATGTT
Statistics
Matches: 322, Mismatches: 64, Indels: 16
0.80 0.16 0.04
Matches are distributed among these distances:
170 1 0.00
171 58 0.18
172 252 0.78
173 11 0.03
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (170 bp):
ATTATGTGAAAGAATAATGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTATGATAATTACCTTCC
AAGCAATAGACTCAGGTTCGACTCCCAACAAATACAATTACGATAGTAAAAAATTAAGGGGAAAT
TTTTAAAAGTAAAATGAGTAGTGTATACGTGTTGTTCTTG
Found at i:918876 original size:100 final size:100
Alignment explanation
Indices: 918694--918882 Score: 247
Period size: 100 Copynumber: 1.9 Consensus size: 100
918684 TAAGAGGAAA
* * * * *
918694 TTTTGAAAAGTAAAATGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAAGAAATAGTGTGAA
1 TTTTAAAAAGTAAAACGAATAGTATATACATGTTGTTCTTGATTATGTGAAAGAAATAGTGTGAA
* * *
918759 AGAAGGGGCGTTTGTAGTCCAACGGTTGGGGAATG
66 AGAAGAGGCATTCGTAGTCCAACGGTTGGGGAATG
* * *
918794 TTTTAAAAAGTAAAACGAATAGTATATACATGTTGTTTTTTTATTATGTGAACCG-AATAGTGT-
1 TTTTAAAAAGTAAAACGAATAGTATATACATGTTG-TTCTTGATTATGTGAA-AGAAATAGTGTG
918857 AAAGAAGAGGCATTCGTAGTCCAACG
64 AAAGAAGAGGCATTCGTAGTCCAACG
918883 ATTAATGATA
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
100 53 0.70
101 22 0.29
102 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.25, T:0.33
Consensus pattern (100 bp):
TTTTAAAAAGTAAAACGAATAGTATATACATGTTGTTCTTGATTATGTGAAAGAAATAGTGTGAA
AGAAGAGGCATTCGTAGTCCAACGGTTGGGGAATG
Found at i:919254 original size:172 final size:171
Alignment explanation
Indices: 918794--920277 Score: 1093
Period size: 172 Copynumber: 8.6 Consensus size: 171
918784 TTGGGGAATG
* * * ** * * *
918794 TTTTAAAAAGTAAAACGAATAGTATATACATGTTGTTTTTTTATTATGTGAACCGAATAGTGTAA
1 TTTTGAAAAGTAAAACGAATAGTGTATACGT-TTG-TGCTTGATTATGTGAAACAAATAGTGTAA
* * * * * * *
918859 AGAAGAGGCATTCGTAGTCCAACGATTAATGATAATTTCCTTCCAAGCTATAGACC-CAGGTT-G
64 AGAAGAGGCGTTTGTAGTCCAACGGTT-AGGATAATTACCTTCCAAGCAATAGACCTCGGGTTCG
* * *** * *
918922 AACTCCCAGCAAACACAATTACGATAGTAAAAAATTATGGAGAAAA
128 -ACTCTCGGCAAATGTAATTACGATATTAAAAAATTAAGG-GAAAA
* * * *
918968 TTTTGAAAAGTAAAATGAGTAGTGAGTAGAGTATATGTGTTGTTCTTGATTATATGAAACAAATA
1 TTTTGAAAAGTAAAACGA--A-T-AGT---GTATACGT-TTGTGCTTGATTATGTGAAACAAATA
* * * * * ** * *
919033 GTTTAAAGAAGAGGCATTTTTAGTCCAACGATTTGGATAATCGCCTTCCATGCAATGGACCT-GG
58 GTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGACCTCGG
* * * * * *
919097 GTTTGACTCTCGGTAAATGTAATTACGCTATTAAAAAATTATGGGCGAAT
123 GTTCGACTCTCGGCAAATGTAATTACGATATTAAAAAATTAAGGG-AAAA
* * ***
919147 TTTTGAAAAGTAAAACAAATAGTGTATACCATTCACGCTTGATTATGTGAAACAAATAGTGTAAA
1 TTTTGAAAAGTAAAACGAATAGTGTATA-CGTTTGTGCTTGATTATGTGAAACAAATAGTGTAAA
* **
919212 TAAGAGGTTTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGACCT-GGGTTCGAC
65 GAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGACCTCGGGTTCGAC
* * *
919276 TC-CTGGCTAATGCAATTACGATAGTAAAAAATTAAGGGGAAAA
130 TCTC-GGCAAATGTAATTACGATATTAAAAAATTAA-GGGAAAA
* * * ** **
919319 TTTTGTAAAGTAAAAC-AAGTGGTGTATACTTGTTGTTATTGATTATGTGAAATGAATAGTGTAA
1 TTTTGAAAAGTAAAACGAA-TAGTGTATACGT-TTGTGCTTGATTATGTGAAACAAATAGTGTAA
* * ** * ** * *
919383 AGAAGATGCGTTTGTAATCCAACAATTAAGATAATT-TTTTCCAAGCAATAGACC-CAGGTTCTA
64 AGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGACCTCGGGTTCGA
* * *** * * *
919446 CTCCCGACAAAAACAATTAGGATATTATAAAATTAATGGAAATA
129 CTCTCGGCAAATGTAATTACGATATTAAAAAATTAAGGGAAA-A
* *
919490 TTTTGAAAAGTAAAACG-ATAAGTGTATATGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAA
1 TTTTGAAAAGTAAAACGAAT-AGTGTATACGT-TTGTGCTTGATTATGTGAAACAAATAGTGTAA
* * * * *
919554 AGAAGAGGCGTTTGTAGTACAACCGTTAGGATAATTACCTTCCAATCAGTTAG--CTCGGGTTCA
64 AGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGCA-ATAGACCTCGGGTTCG
** * * * ** *
919617 ACTAACAGAAAATACT-ATTTTGATATTAAAAAATTAAGGGGAAA
128 ACTCTCGGCAAAT-GTAATTACGATATTAAAAAATTAAGGGAAAA
* * * ** *
919661 TTTT-AAAAGTAAAACGAATAATGTATATC-TTTCGTGCTTGATTATATAAAATGAATTGTGTAA
1 TTTTGAAAAGTAAAACGAATAGTGTATA-CGTTT-GTGCTTGATTATGTGAAACAAATAGTGTAA
* * * * *
919724 AGAAAAGGCGTTAGTAGTCTAATGGTTAGGATAATTACCTTCCAAGCAATAGA-CTCGTGTTCGA
64 AGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGACCTCGGGTTCGA
* ** * * * * * *
919788 CTCACAACAAACGTAATTACTATAGTGAAGAATTAATGGGAAAT
129 CTCTCGGCAAATGTAATTACGATATTAAAAAATTAA-GGGAAAA
* * * * *
919832 TTTTTAAAAGTAAAACGAGTAGTGTATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTATA
1 TTTTGAAAAGTAAAACGAATAGTGTATACGT-TTGTGCTTGATTATGTGAAACAAATAGTGTAAA
* * * * * *
919897 GAAGAGGCGTTTGTAGTCCAACCGTTAGGATAATTGCCTGCCAAGCAGTTG-TCTCGGGTTCGAC
65 GAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGACCTCGGGTTCGAC
* * * *
919961 TCGT-GGAAAATGAAATTTCGATAGTAAAAAATTAAGTGGAAAA
130 TC-TCGGCAAATGTAATTACGATATTAAAAAATTAAG-GGAAAA
* * * * * * *
920004 TTTTGAAAAGTAAAACGAATAATTTTTACCTTTTGTGATTCATTATGTGAAAACTAAA-ACTGTA
1 TTTTGAAAAGTAAAACGAATAGTGTATA-CGTTTGTGCTTGATTATGTG-AAAC-AAATAGTGTA
* * ** * *
920068 AAGAAGAGGTGTTTGTAGTCCTATTGTTAGGATAATTACCTTCCAAGAAATAGA-CTCGGGTTTG
63 AAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGACCTCGGGTTCG
* * *
920132 AATCTCGCCAAATGAAATTACGAT-TGTAAAAAATTAAGTGGAAAA
128 ACTCTCGGCAAATGTAATTACGATAT-TAAAAAATTAAG-GGAAAA
* * * * *
920177 TTTTGAAAAAATAAAGAAAAC-AATATGTATATACCTTTTGTGCTTGGTTATATGAAACAAATAG
1 TTTTG-AAAAGT----AAAACGAATA-GTGTATA-CGTTTGTGCTTGATTATGTGAAACAAATAG
* * *
920241 TGTAAAGAATAGGCGTTTGTAGACCAATGGTTAGGAT
59 TGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT
920278 GATTGCCTCC
Statistics
Matches: 1036, Mismatches: 225, Indels: 95
0.76 0.17 0.07
Matches are distributed among these distances:
169 6 0.01
170 123 0.12
171 157 0.15
172 400 0.39
173 113 0.11
174 24 0.02
175 3 0.00
176 5 0.00
177 43 0.04
178 30 0.03
179 74 0.07
180 49 0.05
181 9 0.01
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.31
Consensus pattern (171 bp):
TTTTGAAAAGTAAAACGAATAGTGTATACGTTTGTGCTTGATTATGTGAAACAAATAGTGTAAAG
AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTACCTTCCAAGCAATAGACCTCGGGTTCGACT
CTCGGCAAATGTAATTACGATATTAAAAAATTAAGGGAAAA
Found at i:919844 original size:513 final size:520
Alignment explanation
Indices: 918785--920021 Score: 1274
Period size: 513 Copynumber: 2.4 Consensus size: 520
918775 GTCCAACGGT
* * * * * *
918785 TGGGGAATGTTTTAAAAAGTAAAACGAA-TAGTATATACATGTTGTTTTTTTATTATGTGAACCG
1 TGGGAAAT-TTTTTAAAAGTAAAAC-AAGTAGTGTATACATGTTG-TTATTGATTATGTGAAACG
* * * *
918849 AATAGTGTAAAGAAGAGGCATTCGTAGTCCAACGATTAATGATAATTTCCTTCCAAGCTATAGAC
63 AATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACAATTAATGATAATTTCCTTCCAAGCAATAGAC
* *
918914 CCAGGTTGAACTCCCAGCAAACACAATTACGATAGTAAAAAATTATGGAGAAAATTTTGAAAAGT
128 CCAGGTTCAACTCCCAGCAAAAACAATTACGATAGTAAAAAATTATGGAGAAAATTTTGAAAAGT
* *
918979 AAAATGAGTAGTGAGTAGAGTATATGTGTTGTTCTTGATTATATGAAACAAATAGTTTAAAGAAG
193 AAAACGAGTA--GAGT--AGTATATGTGTTGTTCTTGATTATATGAAACAAATAGTGTAAAGAAG
* * * * ** ** *
919044 AGGCATTTTTAGTCCAACGATTTGGATAATCGCCTTCCATGCAATGGACCTGGGTTTGACTCTCG
254 AGGCATTTGTAGTACAACGATTAGGATAATCACCTTCCATGCAATGGACCTGGGTTCAACTAACA
* * * * * *
919109 GTAAATGTAATTACGCTATTAAAAAATTATGGGCGAATTTTTGAAAAGTAAAACAAATAGTGTAT
319 GAAAATCTAATTACGATATTAAAAAATTAAGGGCGAAATTTTGAAAAGTAAAACAAATAATGTAT
* * * * ** *
919174 ACCATTCACGCTTGATTATGTGAAACAAATAGTGTAAATAAGAGGTTTTTGTAGTCCAACGGTTA
384 ACCATTCACGCTTGATTATATAAAACAAATAGTGTAAAGAAAAGGCGTTAGTAGTCCAACGGTTA
** * *
919239 GGATAATTACCTTCCAAGCAATAGACCTGGGTTCGACTCCTGGCTAATGCAATTACGATAGTAAA
449 GGATAATTACCTTCCAAGCAATAGACCTGGGTTCGACTCCTAACAAACGCAATTACGATAGTAAA
919304 AAATTAA
514 AAATTAA
* * * * *
919311 GGGGAAAATTTTGT-AAAGTAAAACAAGTGGTGTATACTTGTTGTTATTGATTATGTGAAATGAA
1 TGGG-AAATTTTTTAAAAGTAAAACAAGTAGTGTATACATGTTGTTATTGATTATGTGAAACGAA
* * *
919375 TAGTGTAAAGAAGATGCGTTTGTAATCCAACAATTAA-GATAATTT-TTTCCAAGCAATAGACCC
65 TAGTGTAAAGAAGAGGCGTTTGTAGTCCAACAATTAATGATAATTTCCTTCCAAGCAATAGACCC
* * * * *
919438 AGGTTCTACTCCC-GACAAAAACAATTAGGATATTATAAAATTAATGGA-AATATTTTGAAAAGT
130 AGGTTCAACTCCCAG-CAAAAACAATTACGATAGTAAAAAATT-ATGGAGAAAATTTTGAAAAGT
*
919501 AAAACGA-TA-AGT-GTATATGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGC
193 AAAACGAGTAGAGTAGTATATGTGTTGTTCTTGATTATATGAAACAAATAGTGTAAAGAAGAGGC
* * * * *
919563 GTTTGTAGTACAACCG-TTAGGATAATTACCTTCCAAT-CAGT-TAGCTCGGGTTCAACTAACAG
258 ATTTGTAGTACAA-CGATTAGGATAATCACCTTCC-ATGCAATGGACCT-GGGTTCAACTAACAG
** *
919625 AAAATACT-ATTTTGATATTAAAAAATTAAGGG-GAAATTTT-AAAAGTAAAACGAATAATGTAT
320 AAAAT-CTAATTACGATATTAAAAAATTAAGGGCGAAATTTTGAAAAGTAAAACAAATAATGTAT
* * ** ** * * *
919687 ATCTTTCGTGCTTGATTATATAAAATGAATTGTGTAAAGAAAAGGCGTTAGTAGTCTAATGGTTA
384 ACCATTCACGCTTGATTATATAAAACAAATAGTGTAAAGAAAAGGCGTTAGTAGTCCAACGGTTA
* * * *
919752 GGATAATTACCTTCCAAGCAATAGA-CTCGTGTTCGACTCAC-AACAAACGTAATTACTATAGTG
449 GGATAATTACCTTCCAAGCAATAGACCT-GGGTTCGACTC-CTAACAAACGCAATTACGATAGTA
*
919815 AAGAATTAA
512 AAAAATTAA
* ** * *
919824 TGGGAAATTTTTTAAAAGTAAAACGAGTAGTGTATAGGTGTTGTTCTTGATTATGTGAAACAAAT
1 TGGGAAATTTTTTAAAAGTAAAACAAGTAGTGTATACATGTTGTTATTGATTATGTGAAACGAAT
* ** * * * * * * * *
919889 AGTGTATAGAAGAGGCGTTTGTAGTCCAACCGTT-AGGATAATTGCCTGCCAAGCAGTTGTCTCG
66 AGTGTAAAGAAGAGGCGTTTGTAGTCCAACAATTAATGATAATTTCCTTCCAAGCAATAGACCCA
* ** * * *
919953 GGTTCGACT-CGTGGAAAATGA-AATTTCGATAGTAAAAAATTAAGTG-GAAAATTTTGAAAAGT
131 GGTTCAACTCCCAGCAAAA--ACAATTACGATAGTAAAAAATTATG-GAGAAAATTTTGAAAAGT
920015 AAAACGA
193 AAAACGA
920022 ATAATTTTTA
Statistics
Matches: 586, Mismatches: 107, Indels: 48
0.79 0.14 0.06
Matches are distributed among these distances:
512 11 0.02
513 217 0.37
514 70 0.12
515 111 0.19
516 5 0.01
518 3 0.01
521 3 0.01
522 70 0.12
523 13 0.02
524 51 0.09
525 23 0.04
526 6 0.01
527 3 0.01
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (520 bp):
TGGGAAATTTTTTAAAAGTAAAACAAGTAGTGTATACATGTTGTTATTGATTATGTGAAACGAAT
AGTGTAAAGAAGAGGCGTTTGTAGTCCAACAATTAATGATAATTTCCTTCCAAGCAATAGACCCA
GGTTCAACTCCCAGCAAAAACAATTACGATAGTAAAAAATTATGGAGAAAATTTTGAAAAGTAAA
ACGAGTAGAGTAGTATATGTGTTGTTCTTGATTATATGAAACAAATAGTGTAAAGAAGAGGCATT
TGTAGTACAACGATTAGGATAATCACCTTCCATGCAATGGACCTGGGTTCAACTAACAGAAAATC
TAATTACGATATTAAAAAATTAAGGGCGAAATTTTGAAAAGTAAAACAAATAATGTATACCATTC
ACGCTTGATTATATAAAACAAATAGTGTAAAGAAAAGGCGTTAGTAGTCCAACGGTTAGGATAAT
TACCTTCCAAGCAATAGACCTGGGTTCGACTCCTAACAAACGCAATTACGATAGTAAAAAATTAA
Found at i:919883 original size:342 final size:341
Alignment explanation
Indices: 919184--920277 Score: 1052
Period size: 342 Copynumber: 3.2 Consensus size: 341
919174 ACCATTCACG
* ** *
919184 CTTGATTATGTGAAACAAATAGTGTAAATAAGAGGTTTTTGTAGTCCAACGGTTAGGATAATTAC
1 CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACCGTTAGGATAATTAC
* * ** * *
919249 CTTCCAAGCA-ATAGAC-CTGGGTTCGACTCCTGGCTAATGCAATTACGATAGTAAAAAATTAAG
66 CTTCCAAGCAGTTAGACTC-GGGTTCGACTAC-GGAAAATACAATTTCGATAGTAAAAAATTAAG
* ** * *
919312 GGGAAAATTTTGTAAAGTAAAAC-AAGTGGTGTATACTTGTTGTTATTGATTATGTGAAATGAAT
129 GGG-AAATTTTGAAAAGTAAAACGAA-TAATGTATACTT-TTGTGATTGATTATGTAAAATGAAT
* * * * * * ** *
919376 AGTGTAAAGAAGATGCGTTTGTAATCCAACAATTAAGATAATT-TTTTCCAAGCAATAGACCCAG
191 AGTGTAAAGAAGAGGCGTTTGTAGTCTAATAGTTAGGATAATTACCTTCCAAGCAATAGACTC-G
* * * * *
919440 GTTCTACTCCCGACAAAAACAATTAGGATATTATAAAATTAATGGAAATATTTTGAAAAGTAAAA
255 GTTCGACTCACAACAAAAACAATTACGATATGATAAAATTAATGGAAATATTTTGAAAAGTAAAA
*
919505 CGATAAGTGTATATGTGTTGTT
320 CGATAAGTGTATAGGTGTTGTT
*
919527 CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTACAACCGTTAGGATAATTAC
1 CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACCGTTAGGATAATTAC
* * * * * *
919592 CTTCCAATCAGTTAG-CTCGGGTTCAACTAACAGAAAATACTATTTTGATATTAAAAAATTAAGG
66 CTTCCAAGCAGTTAGACTCGGGTTCGACT-ACGGAAAATACAATTTCGATAGTAAAAAATTAAGG
* * * *
919656 GGAAATTTT-AAAAGTAAAACGAATAATGTATATCTTTCGTGCTTGATTATATAAAATGAATTGT
130 GGAAATTTTGAAAAGTAAAACGAATAATGTATA-CTTTTGTGATTGATTATGTAAAATGAATAGT
* * *
919720 GTAAAGAAAAGGCGTTAGTAGTCTAATGGTTAGGATAATTACCTTCCAAGCAATAGACTCGTGTT
194 GTAAAGAAGAGGCGTTTGTAGTCTAATAGTTAGGATAATTACCTTCCAAGCAATAGACTCG-GTT
*** * * *
919785 CGACTCACAACAAACGTAATTACTATAGTGA-AGAATTAATGGGAAAT-TTTTTAAAAGTAAAAC
258 CGACTCACAACAAAAACAATTACGATA-TGATAAAATTAAT-GGAAATATTTTGAAAAGTAAAAC
919848 GAGT-AGTGTATAGGTGTTGTT
321 GA-TAAGTGTATAGGTGTTGTT
* *
919869 CTTGATTATGTGAAACAAATAGTGTATAGAAGAGGCGTTTGTAGTCCAACCGTTAGGATAATTGC
1 CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACCGTTAGGATAATTAC
* *
919934 CTGCCAAGCAGTT-GTCTCGGGTTCGACT-CGTGGAAAATGA-AATTTCGATAGTAAAAAATTAA
66 CTTCCAAGCAGTTAGACTCGGGTTCGACTAC--GGAAAAT-ACAATTTCGATAGTAAAAAATTAA
* * * *
919996 GTGGAAAATTTTGAAAAGTAAAACGAATAATTTTTACCTTTTGTGATTCATTATGTGAAAACT-A
128 G-GGGAAATTTTGAAAAGTAAAACGAATAATGTATA-CTTTTGTGATTGATTATGT-AAAA-TGA
* * * * *
920060 AAACTGTAAAGAAGAGGTGTTTGTAGTCCT-ATTGTTAGGATAATTACCTTCCAAGAAATAGACT
189 ATAGTGTAAAGAAGAGGCGTTTGTAGT-CTAATAGTTAGGATAATTACCTTCCAAGCAATAGACT
* * * ** * *
920124 CGGGTTTGAATCTCGCCAAATGA-AATTACGAT-TGTAAAAAATTAAGTGGAAA-ATTTTGAAAA
253 C-GGTTCGACTCACAACAAA-AACAATTACGATATG-ATAAAATTAA-TGGAAATATTTTG-AAA
* * * * ** * *
920186 AATAAAGAAAACAATATGTATATACCTTTTGTG
313 AGT----AAAACGATAAGTGTATAGGTGTTGTT
* * * * **
920219 CTTGGTTATATGAAACAAATAGTGTAAAGAATAGGCGTTTGTAGACCAATGGTTAGGAT
1 CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACCGTTAGGAT
920278 GATTGCCTCC
Statistics
Matches: 619, Mismatches: 101, Indels: 55
0.80 0.13 0.07
Matches are distributed among these distances:
340 1 0.00
341 72 0.12
342 202 0.33
343 127 0.21
344 42 0.07
345 95 0.15
346 10 0.02
349 1 0.00
350 69 0.11
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (341 bp):
CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACCGTTAGGATAATTAC
CTTCCAAGCAGTTAGACTCGGGTTCGACTACGGAAAATACAATTTCGATAGTAAAAAATTAAGGG
GAAATTTTGAAAAGTAAAACGAATAATGTATACTTTTGTGATTGATTATGTAAAATGAATAGTGT
AAAGAAGAGGCGTTTGTAGTCTAATAGTTAGGATAATTACCTTCCAAGCAATAGACTCGGTTCGA
CTCACAACAAAAACAATTACGATATGATAAAATTAATGGAAATATTTTGAAAAGTAAAACGATAA
GTGTATAGGTGTTGTT
Found at i:920691 original size:170 final size:172
Alignment explanation
Indices: 920327--920699 Score: 403
Period size: 172 Copynumber: 2.2 Consensus size: 172
920317 TATACCTTTT
* * * * *
920327 GTGCTTGATTATGTGAAACGAATATTGTAAAGAAGAGACGCTTGTAGTCCAACTGCTAGGATAAT
1 GTGCTAGATTATGTGAAACAAATAATGTAAAAAAGAGACGCTTGTAGTCCAACAGCTAGGATAAT
* * * * * * * **
920392 TGCCTTGCAAGCAATAGGCACGGGTTTAACTTCTGGCAAATGCAATTACGATTGTAAAAAGTTAT
66 TGCATTGCAAGCAATAGACACGGGTTCAACTGCCGGCAAATGCAATTACAATAGTAAAAAAATAT
* * *
920457 GGGGAAATTTTTGGAAAGTAAAACAAATAGTATATAACTTTC
131 AGGGAAATTTTTGAAAAGTAAAACAAATAGTATATAACCTTC
* * * * * *
920499 GTGCTTGATTATGTGAAACAAATAATGTAAAAAAGAGGCGCTTTTAGTTCAACAGTTAGGATGAT
1 GTGCTAGATTATGTGAAACAAATAATGTAAAAAAGAGACGCTTGTAGTCCAACAGCTAGGATAAT
* * *
920564 TGCATTTCAAGCAATAGAC-CTGGGTTCGACTGCCGGTAAATG-AATTACAATAGTAAAAAAATA
66 TGCATTGCAAGCAATAGACAC-GGGTTCAACTGCCGGCAAATGCAATTACAATAGTAAAAAAATA
* ** * *
920627 -AGGGAAATTTTTGAAAAGTGAAATGAGTAGTGTATACACCTT-
130 TAGGGAAATTTTTGAAAAGTAAAACAAATAGTATATA-ACCTTC
* *
920669 GTTCTAGATTATGTGAAACAAATAGTGTAAA
1 GTGCTAGATTATGTGAAACAAATAATGTAAA
920700 GACTAGTATA
Statistics
Matches: 167, Mismatches: 32, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
170 57 0.34
171 22 0.13
172 88 0.53
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (172 bp):
GTGCTAGATTATGTGAAACAAATAATGTAAAAAAGAGACGCTTGTAGTCCAACAGCTAGGATAAT
TGCATTGCAAGCAATAGACACGGGTTCAACTGCCGGCAAATGCAATTACAATAGTAAAAAAATAT
AGGGAAATTTTTGAAAAGTAAAACAAATAGTATATAACCTTC
Found at i:920712 original size:49 final size:49
Alignment explanation
Indices: 920654--920751 Score: 142
Period size: 49 Copynumber: 2.0 Consensus size: 49
920644 GTGAAATGAG
*
920654 TAGTGTATACACCTTGTTCTAGATTATGTGAAACAAATAGTGTAAAGAC
1 TAGTATATACACCTTGTTCTAGATTATGTGAAACAAATAGTGTAAAGAC
*** * *
920703 TAGTATATACGTGTTGTTCTTGATTATGTGGAACAAATAGTGTAAAGAC
1 TAGTATATACACCTTGTTCTAGATTATGTGAAACAAATAGTGTAAAGAC
920752 CTGGGTTCGA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (49 bp):
TAGTATATACACCTTGTTCTAGATTATGTGAAACAAATAGTGTAAAGAC
Found at i:920828 original size:18 final size:17
Alignment explanation
Indices: 920791--920824 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
920781 TGAAAGTAAA
920791 AAATAAGGGATTTTTTT
1 AAATAAGGGATTTTTTT
920808 AAATAAGGGATTTTTTT
1 AAATAAGGGATTTTTTT
920825 TAAAAAAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.47
Consensus pattern (17 bp):
AAATAAGGGATTTTTTT
Found at i:921230 original size:171 final size:172
Alignment explanation
Indices: 920970--923404 Score: 478
Period size: 171 Copynumber: 14.2 Consensus size: 172
920960 TGTAATTACA
* * * * * * *
920970 ATAGTAAAATAATTAAGAGAAAAATTTTAAAAATTAAAACGAATAGTGTAAACCTTTTGTGCTTG
1 ATAGTAAAA-AAGTAAGGGGAAAATTTTGAAAAGTAAAACGAACAATGTAAACCTTTTGTGCTTG
* * * * *
921035 AGTATGAGAAATAAATATTGTAAAGAAGT-GGTGTTTGTAATCCAAATGTTAGGATAATT-GCGT
65 AGTACGAGAAATAAATAGTGTAAAGAA-TAGGTATTTGTAATCCAAAGGTTAGGATAATTACCGT
* * **
921098 TCAAAGCAATAGAC-CCGGGTTTGACTCTTGGCAAACGCAATCACG
129 TC-AAGCAATAGACTCAGGGTTCGACTCCCGGCAAACG-AATCACG
* * **
921143 ATAGTACAAAATTAAGGGG-AAATTTTGAAAAGTAAAACGAACAATGTTTACCTTTTGTGCTTGA
1 ATAGTAAAAAAGTAAGGGGAAAATTTTGAAAAGTAAAACGAACAATGTAAACCTTTTGTGCTTGA
* * ** * * *
921207 TTACGTA-AAATGAATAGTGTAAAGAATAGGTATTTGTCGTCCAACGGTTAGGCTAATTACCTTT
66 GTACG-AGAAATAAATAGTGTAAAGAATAGGTATTTGTAATCCAAAGGTTAGGATAATTACCGTT
* * *
921271 CAAGCAATAGACTCAGGGTTCGACTCCCGGTAAATGAATTACG
130 CAAGCAATAGACTCAGGGTTCGACTCCCGGCAAACGAATCACG
* * ** * * * *
921314 ATTGTAAAAAAGTAAGGGGAAAATTTTGAAAAGTATAACGAGTAGTGTATACGC-GTTGTCCTTG
1 ATAGTAAAAAAGTAAGGGGAAAATTTTGAAAAGTAAAACGAACAATGTAAAC-CTTTTGTGCTTG
* * * ** * * *
921378 A-T--------T--AT--T-TGAATAAGAGGCGTTTGTAGTCCAACA-GTTATGATAAATACC-T
65 AGTACGAGAAATAAATAGTGTAAAGAATAGGTATTTGTAATCCAA-AGGTTAGGATAATTACCGT
* * * * *
921427 TCCAAGTAATAGAC-CTGGGTTCGACTCCCAGCAAACGCAATGACA
129 T-CAAGCAATAGACTCAGGGTTCGACTCCCGGCAAACG-AATCACG
* * * ** * * * * **
921472 ATAGTAAAAAATTGAGGGGAAAATTTTAAAAAGTAAAACGAGTAGTGTATACATGTTGTTATTGA
1 ATAGTAAAAAAGTAAGGGGAAAATTTTGAAAAGTAAAACGAACAATGTAAACCTTTTGTGCTTGA
* * * * ** * * * * *
921537 TTATGTGAAACAAAT-GCTGTAAAGACGAGGTGTTTGTAGTCCAACGGTTAGGATAATTGCCTTT
66 GTACGAGAAATAAATAG-TGTAAAGAATAGGTATTTGTAATCCAAAGGTTAGGATAATTACCGTT
* * * * ** * *
921601 TAATCAATATACTC-GGGTTCGATTCCCAACAAACGCAATTAGG
130 CAAGCAATAGACTCAGGGTTCGACTCCCGGCAAACG-AATCACG
* * ** * * * * *
921644 ATTA-TAAAAAATTAAGGGGAAAATGTTGAAAAGTTAAAACGAGTAGTGTATACGTGTTGTTCTT
1 A-TAGTAAAAAAGTAAGGGGAAAATTTTGAAAAG-TAAAACGAACAATGTAAACCTTTTGTGCTT
** * * * * * * * * * * *
921708 GTTTATGTGAAACAAATAACT-TAAATAAAAGGCATTTTTAGTCCTATAA--TTAGGACAATTTC
64 GAGTACGAGAAATAAAT-AGTGTAAAGAATAGGTATTTGTAATCC-A-AAGGTTAGGATAATTAC
* * ** * * *
921770 C-TTCAAGGCAAAAAACT-ATAGTTCGACTCCCGGTAAACACAATTACG
126 CGTTCAA-GCAATAGACTCAGGGTTCGACTCCCGGCAAAC-GAATCACG
* * * * * * * * * * *
921817 ATTGTAAAAAAATTAAGGGGGAAATGTTT-AAAAGTAAAACGAATAGTGTATACATGTTATACGT
1 ATAGT-AAAAAAGTAAGGGGAAAAT-TTTGAAAAGTAAAACGAACAATGTAAACCTTTTGTGCTT
* * * * * * * ** * * *
921881 GATTATGTGAAACAAATAGTTTTAAGAAGAGGCGTTTGTACTCCAACGGTTAGGATAATTGCC-T
64 GAGTACGAGAAATAAATAGTGTAAAGAATAGGTATTTGTAATCCAAAGGTTAGGATAATTACCGT
* * * *
921945 TCTAAGCAATAGAAC-C-GGGTTCGACT-TCGGAAAAACACAATTACG
129 TC-AAGCAATAG-ACTCAGGGTTCGACTCCCGG-CAAAC-GAATCACG
* * * * * ** * * *
921990 ATTGTAAAAAATTAAGGTGAAAATTTTTAAAAGTAAAATGAGTAGTAGTATATA-GTTGTTGTTC
1 ATAGTAAAAAAGTAAGGGGAAAATTTTGAAAAGTAAAACGAACAAT-GTA-A-ACCTT-TTGTGC
* * * * * * * ** * * * * *
922054 GTGATTATGTGAAACAAATAGTGTAAACAAAAGGCGTTTGTAGTCCAACGCTTAAGATAATTTCC
62 TTGAGTACGAGAAATAAATAGTGTAAAGAATAGGTATTTGTAATCCAAAGGTTAGGATAATTACC
* * * * *
922119 -TTACAAGCAATAGACTC-GAGTTCGACTTCCGTCAAATGAATTACG
127 GTT-CAAGCAATAGACTCAGGGTTCGACTCCCGGCAAACGAATCACG
* * ** * * **** * * ** *
922164 TTAGTAAAAAATTAAAAGGAAATTTTTTAAAAGTAAAACGAGTTGTGTATACGTGTTT-TTATTC
1 ATAGTAAAAAAGTAAGGGGAAAATTTTGAAAAGTAAAACGAACAATGTAAACCT-TTTGTGCTTG
* * * * * * * ** * * *
922228 ATTATGTGAAACAAATAGTGTCAATAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCC-TT
65 AGTACGAGAAATAAATAGTGTAAAGAATAGGTATTTGTAATCCAAAGGTTAGGATAATTACCGTT
** * * * * *
922292 CCAAGTGATCA-ACCCA-GGTTTGACACCCGACAAACACAATCACG
130 -CAAGCAAT-AGACTCAGGGTTCGACTCCCGGCAAAC-GAATCACG
* * * * * ** * * * ** * *
922336 ATCGTAAAAAA-TTAGGGGGAGATTTTAAAAAGTAAAACGAGTAGTGTATACATGATGTACTTGC
1 ATAGTAAAAAAGTAAGGGGAAAATTTTGAAAAGTAAAACGAACAATGTAAACCTTTTGTGCTTGA
* ** * * * * * * * *
922400 TTACCTGAAACAAATAGTGTAAA-TATGATGCATTCGTAGTCCTACA-GTTAGGATAATTGCC-T
66 GTACGAGAAATAAATAGTGTAAAGAAT-AGGTATTTGTAATCC-AAAGGTTAGGATAATTACCGT
* * *
922462 TCCAATCAATAGACTC-GGGTTCGACTCCCGGAAAACGTAATTACG
129 T-CAAGCAATAGACTCAGGGTTCGACTCCCGGCAAACG-AATCACG
* * ** * * * * * *
922507 ATAGTAAAAAATTAAGGGGAAAATGTTGAAAAGTAAAAC-AGTAGTGTATACATGTTAT-TTTGA
1 ATAGTAAAAAAGTAAGGGGAAAATTTTGAAAAGTAAAACGAACAATGTAAACCTTTTGTGCTTGA
* * * * * * * * *
922570 TTATGTGATACAAATAGTGTAAAGAAGAGGTA----TATTCCAACGATTAGGATAATTGA-C-TT
66 GTACGAGAAATAAATAGTGTAAAGAATAGGTATTTGTAATCCAAAGGTTAGGATAATT-ACCGTT
* * * * *
922629 CCAAGCAATAGAC-CCGGGTTGGACTCCCGACAAATGCAATTACG
130 -CAAGCAATAGACTCAGGGTTCGACTCCCGGCAAACG-AATCACG
** * * * ** **
922673 ATAGTAGTACAAATTTAAGGGGAAAATTTTGAAAAGTAAAAC-AAGATGTGTACATGTTTTGTTA
1 ATAGTA--A-AAAAGTAAGGGGAAAATTTTGAAAAGTAAAACGAACA-ATGTAAACCTTTTGTGC
* * * * * * ** * * ** **** *
922737 TTGATTATGTGAAACAAATAGCGTAAATAGGAGGTGTTTTTCTTCCAACCACTAGGATAATTGCC
62 TTGAGTACGAGAAATAAATAGTGTAAAGAATAGGTATTTGTAATCCAAAGGTTAGGATAATTACC
* * * * * **** ** * **
922802 -TTCCAGGCAAGAAAC-CCGGGTTTGACGGGTGAAAAAGGCAATTTCG
127 GTT-CAAGCAATAGACTCAGGGTTCGACTCCCGGCAAACG-AATCACG
* * * ** *
922848 ATAGTAAAAAAATAAGGGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTTTCGTGCTTGA
1 ATAGTAAAAAAGTAAGGGGAAAATTTTGAAAAGTAAAACGAACAATGTAAACCTTTTGTGCTTGA
* * * * * * *
922913 TTAC-ATGAAACAAATAGTGTAAAGAATAGGTATTTGTAGTCCAACGGTTAGGCTAATGACCATT
66 GTACGA-GAAATAAATAGTGTAAAGAATAGGTATTTGTAATCCAAAGGTTAGGATAATTACCGTT
* * * * * * *
922977 CAAGCAATAGAC-CCGGGTTCAACTACAGGAAAATGAATTACG
130 CAAGCAATAGACTCAGGGTTCGACTCCCGGCAAACGAATCACG
** * * *** ** ** * ** * *
923019 ATTTTATAAAATTAAGGGGGAAAA-TTTGAAAAGTAAATTTAGTAACATATATGTGTTGTTCTTG
1 ATAGTAAAAAAGTAA-GGGGAAAATTTTGAAAAGTAAAACGAACAATGTAAACCTTTTGTGCTTG
* * * * * * ** * *
923083 ATTATGTA-AAA-AAATAATGTGAATAAGAGGCGTTTGTAATCCAACGGTTAGGATAATTACCTT
65 AGTACG-AGAAATAAATAGTGTAAAGAATAGGTATTTGTAATCCAAAGGTTAGGATAATTACCGT
* * ** * * *
923146 TTAAGCAATAGACTC-GGGTTTGACTCTTGGGAAACGCAATGACA
129 TCAAGCAATAGACTCAGGGTTCGACTCCCGGCAAACG-AATCACG
* ** * * ** * * * * *
923190 ATAGTAAAAAATTAAGCAGAAAACTTTAAAAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGA
1 ATAGTAAAAAAGTAAGGGGAAAATTTTGAAAAGTAAAACGAACAATGTAAACCTTTTGTGCTTGA
* * * * * * * *
923255 TTATGTGAAACAAATAGTGTGTAAA-AATGAGGTGTTTGTAGTCCAACA-ATTAGGATAATTGCC
66 GTACGAGAAATAAATA--GTGTAAAGAAT-AGGTATTTGTAATCCAA-AGGTTAGGATAATTACC
* * * * * *
923318 -TTCCAATCAATATAC-CCGGGTTCGACTCCCGACAAACACAATTACG
127 GTT-CAAGCAATAGACTCAGGGTTCGACTCCCGGCAAAC-GAATCACG
* **
923364 ATGGTAAAAACTTAAGGAGG-AAATGTTT-AAAAGTAAAACGA
1 ATAGTAAAAAAGTAAGG-GGAAAAT-TTTGAAAAGTAAAACGA
923405 GTAGTGTGTA
Statistics
Matches: 1765, Mismatches: 397, Indels: 199
0.75 0.17 0.08
Matches are distributed among these distances:
157 21 0.01
158 103 0.06
159 2 0.00
161 2 0.00
163 1 0.00
165 2 0.00
166 61 0.03
168 1 0.00
169 34 0.02
170 114 0.06
171 489 0.28
172 370 0.21
173 239 0.14
174 169 0.10
175 154 0.09
176 3 0.00
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (172 bp):
ATAGTAAAAAAGTAAGGGGAAAATTTTGAAAAGTAAAACGAACAATGTAAACCTTTTGTGCTTGA
GTACGAGAAATAAATAGTGTAAAGAATAGGTATTTGTAATCCAAAGGTTAGGATAATTACCGTTC
AAGCAATAGACTCAGGGTTCGACTCCCGGCAAACGAATCACG
Found at i:921530 original size:158 final size:158
Alignment explanation
Indices: 921239--921545 Score: 391
Period size: 158 Copynumber: 1.9 Consensus size: 158
921229 AGAATAGGTA
* * * * * * *
921239 TTTGTCGTCCAACGGTTAGGCTAATTACCTTTCAAGCAATAGACTCAGGGTTCGACTCCCGGTAA
1 TTTGTAGTCCAACAGTTAGGATAAATACCTTCCAAGCAATAGACTCAGGGTTCGACTCCCAGCAA
* * * * * * *
921304 ATGAATTACGATTGTAAAAAAGTAAGGGGAAAATTTTGAAAAGTATAACGAGTAGTGTATACGCG
66 ACGAATGACAATAGTAAAAAAGTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAGTGTATACACG
* *
921369 TTGTCCTTGATTATTTGAATAAGAGGCG
131 TTGTCATTGATTATGTGAATAAGAGGCG
* * *
921397 TTTGTAGTCCAACAGTTATGATAAATACCTTCCAAGTAATAGAC-CTGGGTTCGACTCCCAGCAA
1 TTTGTAGTCCAACAGTTAGGATAAATACCTTCCAAGCAATAGACTCAGGGTTCGACTCCCAGCAA
* * *
921461 ACGCAATGACAATAGTAAAAAATTGAGGGGAAAATTTTAAAAAGTAAAACGAGTAGTGTATACAT
66 ACG-AATGACAATAGTAAAAAAGTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAGTGTATACAC
*
921526 GTTGTTATTGATTATGTGAA
130 GTTGTCATTGATTATGTGAA
921546 ACAAATGCTG
Statistics
Matches: 125, Mismatches: 23, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
157 19 0.15
158 106 0.85
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.29
Consensus pattern (158 bp):
TTTGTAGTCCAACAGTTAGGATAAATACCTTCCAAGCAATAGACTCAGGGTTCGACTCCCAGCAA
ACGAATGACAATAGTAAAAAAGTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAGTGTATACACG
TTGTCATTGATTATGTGAATAAGAGGCG
Found at i:923603 original size:171 final size:171
Alignment explanation
Indices: 921389--927583 Score: 3765
Period size: 172 Copynumber: 36.1 Consensus size: 171
921379 TTATTTGAAT
* * * * *
921389 AAGAGGCGTTTGTAGTCCAACAGTTATGATAAATACCTTCCAAGTAATAGAC-CTGGGTTCGACT
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTC-GGGTTCGACT
** * * * * *
921453 CCCAGCAAACGCAATGACAATAGTAAAAAATTGAGGGGAAAATTTTAAAAAGTAAAACGAGTAGT
65 CCGGGAAAACGCAATTACGATAGTAAAAAATT-AAGGGAAAATTTTGAAAAGTAAAACGAGTAGT
* *
921518 GTATACATGTTGTTATTGATTATGTGAAACAAAT-GCTGTAAAG
129 GTATACGTGTTGTTCTTGATTATGTGAAACAAATAG-TGTAAAG
* * ** * * *
921561 ACGAGGTGTTTGTAGTCCAACGGTTAGGATAATTGCCTTTTAATCAATATACTCGGGTTCGATTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
** * *
921626 C-CAACAAACGCAATTAGGATTA-TAAAAAATTAAGGGGAAAATGTTGAAAAGTTAAAACGAGTA
66 CGGGA-AAACGCAATTACGA-TAGTAAAAAATTAA-GGGAAAATTTTGAAAAG-TAAAACGAGTA
* * *
921689 GTGTATACGTGTTGTTCTTGTTTATGTGAAACAAATAACT-TAAAT
127 GTGTATACGTGTTGTTCTTGATTATGTGAAACAAAT-AGTGTAAAG
* * * * *** * * * * ***
921734 AAAAGGCATTTTTAGTCCTATAATTAGGACAATTTCCTT-CAAGGCAAAAAACTATAGTTCGACT
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAA-GCAATAGACTCGGGTTCGACT
* * * * * *
921798 CCCGGTAAACACAATTACGATTGTAAAAAAATTAAGGGGGAAATGTTT-AAAAGTAAAACGAATA
65 CCGGGAAAACGCAATTACGATAGT-AAAAAATTAA-GGGAAAAT-TTTGAAAAGTAAAACGAGTA
* * * * * *
921862 GTGTATACATGTTATACGTGATTATGTGAAACAAATAGTTTTAAG
127 GTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* *
921907 AAGAGGCGTTTGTACTCCAACGGTTAGGATAATTGCCTTCTAAGCAATAGAAC-CGGGTTCGACT
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAG-ACTCGGGTTCGACT
* * * * * *
921971 TCGGAAAAACACAATTACGATTGTAAAAAATTAAGGTGAAAATTTTTAAAAGTAAAATGAGTAGT
65 CCGGGAAAACGCAATTACGATAGTAAAAAATTAAGG-GAAAATTTTGAAAAGTAAAACGAGTAGT
* * *
922036 AGTATATAGTTGTTGTTCGTGATTATGTGAAACAAATAGTGTAAAC
129 -GTATA-CG-TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * * * * *
922082 AAAAGGCGTTTGTAGTCCAACGCTTAAGATAATTTCCTTACAAGCAATAGACTCGAGTTCGACTT
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGAC-T
** * * * * * *
922147 CC-GTCAAATG-AATTACGTTAGTAAAAAATTAAAAGGAAATTTTTTAAAAGTAAAACGAGTTGT
65 CCGGGAAAACGCAATTACGATAGTAAAAAATT-AAGGGAAAATTTTGAAAAGTAAAACGAGTAGT
* * * * *
922210 GTATACGTGTTTTTATTCATTATGTGAAACAAATAGTGTCAAT
129 GTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
** * * * *
922253 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGTGATCA-ACCCAGGTTTGACA
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAAT-AGACTCGGGTTCGACT
* * * * * * * *
922317 CC-CGACAAACACAATCACGATCGTAAAAAATTAGGGGGAGATTTTAAAAAGTAAAACGAGTAGT
65 CCGGGA-AAACGCAATTACGATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACGAGTAGT
* * * * ** *
922381 GTATACATGATGTACTTGCTTACCTGAAACAAATAGTGTAAAT
129 GTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * * * * * *
922424 ATGATGCATTCGTAGTCCTACAGTTAGGATAATTGCCTTCCAATCAATAGACTCGGGTTCGACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * *
922489 CCGGAAAACGTAATTACGATAGTAAAAAATTAAGGGGAAAATGTTGAAAAGTAAAAC-AGTAGTG
66 CGGGAAAACGCAATTACGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAGTG
* * *
922553 TATACATGTTATT-TTGATTATGTGATACAAATAGTGTAAAG
130 TATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * * * * *
922594 AAGA-G-G--TATATTCCAACGATTAGGATAATTGACTTCCAAGCAATAGACCCGGGTTGGACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * * *
922655 C-CGACAAATGCAATTACGATAGTAGTACAAATTTAAGGGGAAAATTTTGAAAAGTAAAACAAG-
66 CGGGA-AAACGCAATTACGATAGTA--A-AAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAGT
* * * * * *
922718 ATGTGTACATGTTTTGTTATTGATTATGTGAAACAAATAGCGTAAAT
126 A-GTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * * ** *** * * * * *
922765 AGGAGGTGTTTTTCTTCCAACCACTAGGATAATTGCCTTCCAGGCAAGAAACCCGGGTTTGA--C
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * * * * **
922828 GGGTGAAAAAGGCAATTTCGATAGTAAAAAAATAAGGGGAAAATTTTGAAAAGTAAAACAAACAG
66 CGG-G-AAAACGCAATTACGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAG
* * * **
922893 TGTTTACCT-TTCGTGCTTGATTACATGAAACAAATAGTGTAAAG
128 TGTATACGTGTT-GTTCTTGATTATGTGAAACAAATAGTGTAAAG
* ** * * *
922937 AATAGGTATTTGTAGTCCAACGGTTAGGCTAA-TGACCATT-CAAGCAATAGACCCGGGTTCAAC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTG-CC-TTCCAAGCAATAGACTCGGGTTCGAC
* * * ** * ***
923000 TACAGGAAAATG-AATTACGATTTTATAAAATTAAGGGGGAAAA-TTTGAAAAGTAAATTTAGTA
64 TCCGGGAAAACGCAATTACGATAGTAAAAAATTAA--GGGAAAATTTTGAAAAGTAAAACGAGTA
*** * * * * *
923063 ACATATATGTGTTGTTCTTGATTATGT-AAAAAAATAATGTGAAT
127 GTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * ** *
923107 AAGAGGCGTTTGTAATCCAACGGTTAGGATAATTACCTTTTAAGCAATAGACTCGGGTTTGACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * * * * *
923172 TTGGG-AAACGCAATGACAATAGTAAAAAATTAAGCAGAAAACTTTAAAAAGTAAAACGAGTAGT
66 -CGGGAAAACGCAATTACGATAGTAAAAAATTAAG-GGAAAATTTTGAAAAGTAAAACGAGTAGT
923236 GTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTGTAAA-
129 GTATACGTGTTGTTCTTGATTATGTGAAACAAATA--GTGTAAAG
* ** * * *
923280 AATGAGGTGTTTGTAGTCCAACAATTAGGATAATTGCCTTCCAATCAATATACCCGGGTTCGACT
1 AA-GAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACT
* * * * *
923345 CC-CGACAAACACAATTACGATGGTAAAAACTTAAGGAGGAAATGTTT-AAAAGTAAAACGAGTA
65 CCGGGA-AAACGCAATTACGATAGTAAAAAATTAAGG-GAAAAT-TTTGAAAAGTAAAACGAGTA
* * * * *
923408 GTGTGTATGTGTTATT-TGTGATTATGTAAAACAAATAGTTTAAAG
127 GTGTATACGTGTTGTTCT-TGATTATGTGAAACAAATAGTGTAAAG
* * * *
923453 AAGAGGCGCTTATAGTCCAACTGTTAGGATAATTGCCTTCTAAGCAATAGACTCGGGTTCGAC-C
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * * * * *
923517 CTGGGAAAATGCAATTGCAATAGTAAAAAATCAA-GGAAATTTTTTGAAAAGTAATACGAGTAGT
66 C-GGGAAAACGCAATTACGATAGTAAAAAATTAAGGGAAA-ATTTTGAAAAGTAAAACGAGTAGT
*
923581 GTATAGGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
129 GTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * **
923624 AAGAGGTGTTTGTTGTCCAACAATTAGGATAATTGCCTTCCAAGCAATAGAACT-GGGTTCGACT
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAG-ACTCGGGTTCGACT
** * * * * * * *
923688 CTC-GTTAAATG-AATTAAGTTAATAAAAAATTAAAAGGAAATTTTTAAAAAGTAAAACGAGTAG
65 C-CGGGAAAACGCAATTACGATAGTAAAAAATT-AAGGGAAAATTTTGAAAAGTAAAACGAGTAG
* * * ** * *
923751 TGTATATGTGTTTTTCTTTATTATAAGTAACAAATAGTGTAAAT
128 TGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
** * * * * *
923795 AAGAGGAATTTTGTAGTCCAAGGGTTAGGATAATTGCCTTTCAAGCGATAGACTTGGGTTCAACT
1 AAGAGG-CGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACT
* ** * ** * * *
923860 CC-AGATGGACACAATCGCGATCGTAAAAAATTAAGGGGAAATATTTAAAAAGTAAAACGAGTAG
65 CCGGGA-AAACGCAATTACGATAGTAAAAAATTAAGGGAAAAT-TTTGAAAAGTAAAACGAGTAG
* * ** *
923924 TGTATTACATGTTGTTTTTGATTACCTGAAAAAAAATAGTGTAAAG
128 TGTA-TACGTGTTGTTCTTGATTATGTG-AAACAAATAGTGTAAAG
* * * * ** * * * **
923970 ATGACGCGTTCGTAGTCCTATAGTTAGGATAATTTCCTCTTTCAATCAATAGACTCAAGTTCGTA
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAA-TTGC-CTTCCAAGCAATAGACTCGGGTTCG-A
* * * * * *
924035 GT-C--G--TACGTAATTACGATAGTAAGAAATTAAGGGGAAAATGTTGAAAAGTAAAATGAGTA
63 CTCCGGGAAAACGCAATTACGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTA
* * * * *
924095 TTGTATATGTGTTGTTCTTGATTAAGTAAAACAAATTGTGTAAAG
127 GTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* *
924140 AA-A---ATGTGTAGTCCAACGGTTAGGATAATTGCCCTTCCAAGCAATAGACTCGGGTTCGACT
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTG-CCTTCCAAGCAATAGACTCGGGTTCGACT
* * * * * *
924201 CC-CGACAAACACGATTATG-CAGT-AAAAATTCAAGGGGAAAATTTTGAAAAGTAAAACAAGTA
65 CCGGGA-AAACGCAATTACGATAGTAAAAAATT-AA-GGGAAAATTTTGAAAAGTAAAACGAGTA
* * * * * **
924263 GTGTACAGGTTTTGTTATTGATTATGTTG-AACAAAAAGCATAAAG
127 GTGTATACGTGTTGTTCTTGATTATG-TGAAACAAATAGTGTAAAG
* ** *** * * * * *
924308 AAGAGGTGTTTGTCTTCCAACCACTAGGACAATTGCCTTCTAGGCAATAAACACGGGTTCGA--C
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * * * * **
924371 AGGCGAAAAAGGCAATTTCGATAGTAAAAAATTAAGGGGAAATTTTGAAAAGTAAAACAAACAGT
66 CGG-G-AAAACGCAATTACGATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACGAGTAGT
* * * * ** *
924436 GTTTACCTTTTGTGCTTGATTACATGAAACAAATAGTGTAAAC
129 GTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* ** * * * * **
924479 AATAGGTATTTGTAGTCCAACGGTTAGGCTAATTACCTTCCAAGCAAAATACTCGGGTTTTACTT
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGAC-T
* * * * * * **
924544 CC-GGTAAATG-AATTACGATTGCAAAAAATTAAGGGGATAATTTTGAAAAGTAGATTGAGTAGT
65 CCGGGAAAACGCAATTACGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAGT
* * * *
924607 GTACACGTGTTGTTCTCGATTATGTAAAAGAAATAGTATGAATAAGAG
129 GTATACGTGTTGTTCTTGATTATGTGAAACAAATAG--TG--TAA-AG
* * ** * ** * * *
924655 TAGTGTACAGGTGTTTGTCTTCCGATC-ACTAGGATAATTGCCTT-CTAGTCAATAAACCCGGGT
1 -A----AGAGGCGTTTGTAGTCC-AACGGTTAGGATAATTGCCTTCCAAG-CAATAGACTCGGGT
* * * ** *
924718 TCGA-T-AGGCCAAAAAGGCAATTTTGATAGTAAAATATTAAGGGAAAATTTTGAAAAGTAAAAC
59 TCGACTCCGG--GAAAACGCAATTACGATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAAC
* ** * * * ** * * * * * **
924781 AAACAGTGTTTACCT-TGGAAAAATT-TTGAAAAT-TAAAACAGACAATGTTTACC
122 GAGTAGTGTATACGTGTTG-----TTCTTGATTATGTGAAACAAATAGTG-TAAAG
**** * ** * * * * *** * *
924834 TTTCGTGCTTGATTACGTGAAACAAATAGTGTAAAGAATAGGTATTTGTAGTCCAA-CAGTTAGG
1 AAGAG-GC--G-TT-TGT-AGTCCAA-CG-GT-TAGGATA---A-TTGCCTTCCAAGCA-ATAGA
** ** * * *
924898 CT--AATT--ACCTTCCAAGCAAATG-AATTACGA-ATGTAAAAAAATTAAGGGGTAAATTTTGA
52 CTCGGGTTCGA-C-TCCGGGAAAACGCAATTACGATA-GT-AAAAAATTAA-GGGAAAATTTTGA
** ** * * * * * *
924957 AAAGTAAATTGAGTAAAGTATATGTGTTGTTCTTGATTATGTAAAAGAAATAATGTGAAT
112 AAAGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* *
925017 AAGAGGCGCTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * * * * *
925082 AC-GGAAAACGCAATGACAATAGTAAAAAAGTAAGGGGAAGATTTTAAAAAGTAGAACGAGTAGT
66 -CGGGAAAACGCAATTACGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAGT
* *
925146 GTATATGTGTTGTTCTTGATTGATTATGTGAATCAAATAGTGTAAAG
129 GTATACGTGTTGTTC----TTGATTATGTGAAACAAATAGTGTAAAG
* * * * *
925193 ACGAGGTGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAATCAATATACTCGTGTTCGACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
** * * * * * * *
925258 C-CAACAAAGGCAATTATGATTGTAAAAAATTAAGGGGAAAATGTTGGAAAGTGAAACGAGTACT
66 CGGGA-AAACGCAATTACGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAGT
* * * *
925322 GTATAAGTGTTGTTCTTGTTTATGTGAAAGAAATAGCT-TAAAT
129 GTATACGTGTTGTTCTTGATTATGTGAAACAAATAG-TGTAAAG
* * * ** * * * * *
925365 AAGAGGTGTTTTTAGTACAACAATTAGGATAATTTCCTTCCAAACAAAAGACTCGAGTTCAACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * * * *
925430 CCGGTAAACACAATTACGATAGTAAAAATTTAAGGGGAAAATGTTT-AAAAGTAAAACAAGTAGT
66 CGGGAAAACGCAATTACGATAGTAAAAAATTAA-GGGAAAAT-TTTGAAAAGTAAAACGAGTAGT
* *
925494 GTATACGTGTTATTCGTT-ATTATGTGAGACAAATAGTGTAAAG
129 GTATACGTGTTGTTC-TTGATTATGTGAAACAAATAGTGTAAAG
* * *
925537 AAGAGGCGTTTGTAGTCCAATGCTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTTGACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACT-
* * * * * * ** * *
925602 CCGTG-AAATG-AATTACGTTAGTAAGAAATAAAAAGGACATTTTTTTAAAAGTAAAACGAGTAC
65 CCGGGAAAACGCAATTACGATAGTAAAAAAT-TAAGGGA-AAATTTTGAAAAGTAAAACGAGTAG
* * * *
925665 TGTATACGTGTTTTTATTCATTATGTGAAACAAATAGTGTAAAT
128 TGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * * * *
925709 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCGAAGCGATAGACCCGGGTTTGACAC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * * ** * * * *
925774 CCGGCAAACACAATCGCTATCGTAAAAAATTAAGGGGAGAATTTTAAAAAGTAAAACGAGTAGTG
66 CGGGAAAACGCAATTACGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAGTG
* *
925839 TATACATGTTGTTCTTGATTACT-TGAAACAAATAGTGTGAAG
130 TATACGTGTTGTTCTTGATTA-TGTGAAACAAATAGTGTAAAG
* * * * * * * *
925881 ATGATGCGTTCGTAGTACTACAGTTAGGATAATTGCCTTCCAATCAATAGACTGGGGTTCGACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
** * * *
925946 C-CAACAAACCCAATTAGGATAGT-AAAAATTAAGGGGAAAATATTGAAAAGTAAAACGAGTAGT
66 CGGGA-AAACGCAATTACGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAGT
*
926009 GTATACGTGTTGTTATTGATTATGTGAAACAAATAGTGTAAAG
129 GTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * * * *
926052 AAGAGAG-G--TGTAGTCCAACGATTAGGATAATTGCCTTTCAAGCAATAGACCCTGGTTAGACT
1 AAGAG-GCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACT
** * * * * * * *
926114 CC-CTACAAATGTAATTATGATAGTAAAAATTTTAGGGGAAATTTTGAAAAGT--TA--AGTAGT
65 CCGGGA-AAACGCAATTACGATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACGAGTAGT
* *
926174 GTA-A-------------AGTATGTGAAACAAATAGCGTAAAG
129 GTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * ** * * * * * * *
926203 AGGAGGTGTTTGTCTTCCAACCGCTAGGATAATTGCCTT-CTAGTTAATAAACCCGGGTTTGA-T
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAG-CAATAGACTCGGGTTCGACT
* * * * * **
926266 -AGGCGAAAAAGGAAATTTCGATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACAAACAG
65 CCGG-G-AAAACGCAATTACGATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACGAGTAG
* * * ** * * * **
926330 TGTTTACCT-TGGGAAAATT-TTGAAAAT-TAAAACAAACAGTGTTTACC
128 TGTATACGTGT-TG----TTCTTGATTATGTGAAACAAATAGTG-TAAAG
**** * ** * * * * *** * *
926377 TTTCGTGCTTGATTACGTGAAACAAATAGTGTAAAGAATAGGTATTTGTAGTCCAA-CAGTTAGG
1 AAGAG-GC--G-TT-TGT-AGTCCAA-CG-GT-TAGGATA---A-TTGCCTTCCAAGCA-ATAGA
** ** * *
926441 CT--AATT--ACCTTCCAAGCAAATG-AATTACGA-ATGTAAAAAATTAA-GG--------G---
52 CTCGGGTTCGA-C-TCCGGGAAAACGCAATTACGATA-GTAAAAAATTAAGGGAAAATTTTGAAA
** * * * *
926488 -GT-AATTGAGTAGTGTATACGTGTTGTTCTTGATTATGTAAAAGAAATAGTGTGAAT
114 AGTAAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* *
926544 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATATACCCGGGTTCGACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* * * * * ** *
926609 CTGGCAAACGCAATGACAATAGTAAAATATTAAGGGGAAAATTTCAAAAAGTAGAACGAGTAGTG
66 CGGGAAAACGCAATTACGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAGTG
926674 TATACGTGTTGTTCTTGATTGATTATGTGAAACAAATAGTGTAAAG
130 TATACGTGTTGTTC----TTGATTATGTGAAACAAATAGTGTAAAG
* * * * *
926720 ACGAGGTGTTTGTAGTCCAACGGTTAGGATAATTGTCTTCCAATCAATAAAAC-CGGGTTCGACT
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAAT-AGACTCGGGTTCGACT
** * * * * ** * *
926784 CC-CAACAAAGGCAATTATGATGGTAAAATATTAAAGGGAAAATGCTGGAAAGTGAAACGAGTAG
65 CCGGGA-AAACGCAATTACGATAGTAAAAAATT-AAGGGAAAATTTTGAAAAGTAAAACGAGTAG
* * * *
926848 TGTATACGTGTTGTTCTTGTTTATGTGAAAGAATTAGCT-TAAAT
128 TGTATACGTGTTGTTCTTGATTATGTGAAACAAATAG-TGTAAAG
* * * * ** * * * * *
926892 AATAGGCATTTTTAGTACAACAATTAGGATAATTTCCTTCCAAACAAAAGACTCGAGTTCAACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
* ** * * * * * *
926957 CCGTTAAACACAATTACAATAGTAAATATTTAAGGGGGAAATGTTT-AAAAGTAAAACAAGTAGT
66 CGGGAAAACGCAATTACGATAGTAAAAAATTAA-GGGAAAAT-TTTGAAAAGTAAAACGAGTAGT
* *
927021 GTATACGTGTTATTCGTT-ATTATGTGAAACAAATAGTGTCAAG
129 GTATACGTGTTGTTC-TTGATTATGTGAAACAAATAGTGTAAAG
* *
927064 AAGAGGCGTTTGTAGTCCAACGCTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTTGACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
** * * * * * *
927129 C-CCATAAATG-AATTACGTTAGTAAGAAATTAAAAGGAAATTTTTTAAAAGTAAAACGAGTAGT
66 CGGGA-AAACGCAATTACGATAGTAAAAAATT-AAGGGAAAATTTTGAAAAGTAAAACGAGTAGT
**
927192 GTATACGTGTTGTTCTTGATTACCTGAAACAAATAGTGTAAAG
129 GTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * * * * * * *
927235 ATGATGCGTTCGTAGTACTACAGTTAGGATAATTGCCTTCCAATCAATAGACTCTGGTTCGACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
** * * *
927300 C-CAACAAACGCAATTAGGATAGTAAAAAATTAAGGGGAAAATATTGAAAAGTAAAACGAGTAAT
66 CGGGA-AAACGCAATTACGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAGT
* * * *
927364 GTATGCGCGTTGTTATTGATTATGTAAAACAAATAGTGT-AAG
129 GTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* * * * *
927406 AAGA-------GTAGTCCAACGATTAGGATAATTGCCTTCAAAGAAATAGACCCGGGTTAGACTC
1 AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
** * * * ***
927464 C-CTACAAACGTAATTATGATAGTAAAAATTTAAGGGGAAAATTTTGAAAAGTAAATTAAGTAGT
66 CGGGA-AAACGCAATTACGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACGAGTAGT
* * * *
927528 GTACA-GTTTTTGTTCTTGACTATGTGAAACAAATAGCGTAAAG
129 GTATACG-TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
* *
927571 AGGAGGTGTTTGT
1 AAGAGGCGTTTGT
927584 CTTCCGATCG
Statistics
Matches: 4592, Mismatches: 1140, Indels: 582
0.73 0.18 0.09
Matches are distributed among these distances:
150 1 0.00
151 28 0.01
152 4 0.00
153 77 0.02
154 12 0.00
155 4 0.00
156 11 0.00
157 24 0.01
158 8 0.00
159 4 0.00
160 1 0.00
161 4 0.00
162 2 0.00
163 3 0.00
164 132 0.03
165 41 0.01
166 88 0.02
167 16 0.00
168 78 0.02
169 124 0.03
170 208 0.05
171 1026 0.22
172 1311 0.29
173 345 0.08
174 256 0.06
175 188 0.04
176 305 0.07
177 14 0.00
178 6 0.00
179 8 0.00
180 12 0.00
181 73 0.02
182 24 0.01
183 33 0.01
184 43 0.01
185 23 0.01
186 35 0.01
187 16 0.00
188 4 0.00
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (171 bp):
AAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC
CGGGAAAACGCAATTACGATAGTAAAAAATTAAGGGAAAATTTTGAAAAGTAAAACGAGTAGTGT
ATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAG
Found at i:924805 original size:39 final size:39
Alignment explanation
Indices: 924761--924835 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
924751 ATATTAAGGG
*
924761 AAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTTGGA
1 AAAATTTTGAAAAGTAAAACAAACAATGTTTACCTTGGA
* *
924800 AAAATTTTGAAAATTAAAACAGACAATGTTTACCTT
1 AAAATTTTGAAAAGTAAAACAAACAATGTTTACCTT
924836 TCGTGCTTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.47, C:0.11, G:0.12, T:0.31
Consensus pattern (39 bp):
AAAATTTTGAAAAGTAAAACAAACAATGTTTACCTTGGA
Found at i:926344 original size:39 final size:39
Alignment explanation
Indices: 926301--926378 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
926291 AAAAAATTAA
926301 GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTT
1 GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTT
*
926340 GGGAAAATTTTGAAAATTAAAACAAACAGTGTTTACCTT
1 GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTT
926379 TCGTGCTTGA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.44, C:0.10, G:0.17, T:0.29
Consensus pattern (39 bp):
GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTT
Found at i:927673 original size:38 final size:39
Alignment explanation
Indices: 927622--927698 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
927612 AAAATATTAA
927622 GGGAAAATTTTGAAAAGT-AAACAAACAGTGTTTACCTT
1 GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTT
* *
927660 GGGAAAATTTTGAAAATTAAAACAGACAGTGTTTACCTT
1 GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTT
927699 TCGTGCTTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
38 17 0.47
39 19 0.53
ACGTcount: A:0.42, C:0.10, G:0.18, T:0.30
Consensus pattern (39 bp):
GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTT
Found at i:928317 original size:172 final size:172
Alignment explanation
Indices: 927782--944863 Score: 6872
Period size: 172 Copynumber: 99.5 Consensus size: 172
927772 CAAGCAAATG
* ** * * *
927782 AATTACGA-ATGTAAAAAATTAA-GGGTAAATTTTGAAAAGTAAATTGAGTAATATATATGTGTT
1 AATTACGATA-GTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * * * * * *
927845 GTTCTTGATTATGTAAAAGAAATAGTGTGAATAAGAGCCGCTTGTAGTCCAACGATTAGGATAAT
65 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * *
927910 TGCCTTCCAAGGAATAGACTCGGGTTCGACTCACGGCAAACGC
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * * * * * *
927953 AATGACAATAGTAAAAAAGTAAGGGGAAAATATTAAAAAGTAGAACGAGTAATGTATATGTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * *
928018 TTCTTGATTGATTATGTGAATCAAATAGTGCAAAGACGAGGTGTTTGTAGTCCAACGGTTAGGAT
66 TTC----TTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT
* * * *
928083 AATTGCCTTCCAATCAATATACTCGGGTTCGACTCCCAACAAAGGC
127 AATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * * *
928129 AATTACGATGGTAAAAAATTAAGGGGAAAATGTTGGAAAGTGAAACGAGTAGTGTATAAGTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * * * **
928194 TTCTTGTTTATGTGAAAGAAATAGCT-TAAATAAGAGGCATTTTTAGTACAACAATTAGGATAAT
66 TTCTTGATTATGTGAAACAAATAG-TGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * * * ** *
928258 TTCCTTCCAAACAAAAGACTCGAGTTCAACTCCCGGTAAACAC
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * *
928301 AATTACGATAGTAAAAATTTAAGGGGGAAATGTTT-AAAAGTAAAACAAGTAGTGTATACGTGTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAAT-TTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* *
928365 ATTCGTT-ATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGCTTAGGATAA
65 GTTC-TTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAA
* * *
928429 TTGCCTTCCAAGCAATAGACTCGGGTTTGACTCCCGTCAAATG-
129 TTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * ** * *
928472 AATTACGTTAGTAAGAAATTAAAAGGAAATATTTTTAAAATTAAAACGAGTAGTGTATACGTGTT
1 AATTACGATAGTAAAAAATTAAGGGGAAA-ATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * * * * * *
928537 TTTATTCATTCTGTGAAATAAATAGTGTAAATAAGAGGCGTTTGTAGTCCAACGGTTAAGATAAT
65 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * * * * *
928602 TGCCTTCGAAGCGATAGACCCGGGTTTGACACCCGGCAAACAC
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
** * * * * *
928645 AATCGCTATCGTAAAAAATTAAGGGGAGAATTTTAAAAAGTAAAACGAGTAGTGTATACATGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
** * * ** * * * *
928710 TTCTTGATTACCTGAAACAAATAGTGTGAAGATGATTCGTTCGTAGTACTACAGTTAGGATAATT
66 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * * * *
928775 GCCTTCCAATCAATAAACTCAGGTTCGACTCCCAAAAAATGC
131 GCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * *
928817 AATTAGGATAGTAAAAAATTAAGAGGAAAATATTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* *
928882 TTATTGATTATGTGAAACAAATAGTGTAAAGAAGAGAG-G--TGTAGTCCAACGATTAGGATAAT
66 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAG-GCGTTTGTAGTCCAACGGTTAGGATAAT
* * * * * * *
928944 TGCCTTTCAAGCAATAGACCCGGGGTAGACTCCCTACAAATGT
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * * *** *
928987 AATTATGAT-TTAAAAATTTAAGTGG-AAATTTTGAAAAGTAAATTAAGTAGTGTACA-GTGTTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTG-TT
* * * * * * ** * * *
929049 TTTCTTGATTCTATGAAACAAATAGCGTAAAGAGGAGGTGTTTGTCTTACAACCGCTAGGATAAT
65 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * ** * *
929114 TGCCTT-CTAGTCAATAAACCCGGGTTCGA-TAGGCGAAAAAGGC
130 TGCCTTCCAAG-CAATAGACTCGGGTTCGACT-CCCGACAAACGC
* * * * * ** ** * * *
929157 AATTTCGATTGTAAAAAATT-A-GGGTAAATTTTGAAAAGAAAAACAAACAACGTTTACCT-TGG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGT-T
** * * * ****** * *
929219 GAAAATT-TTGAAAAT-TAAAACAAACAGTGTTTACCTTTCGTGCTTGATTACGT-GATACAAAT
65 G----TTCTTGATTATGTGAAACAAATAGTG-TAAAGAAGAG-GC--G-TT-TGTAG-T-CCAA-
* * * *** * * ** * * *
929281 AGTGTAAAGAATACGTATTTGTAGTCCAA-CAGTTAGGCT--AATT--ACCTTCCAAGCAAATG-
117 CG-GT-TAGGATA---A-TTGCCTTCCAAGCA-ATAGACTCGGGTTCGA-CTCCCGA-CAAACGC
* **
929340 AATTACGA-ATGT-AAAAATTAAGGGGTAAATTTTGAAAAGTAAATTGAGTAGTGTATACGTGTT
1 AATTACGATA-GTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * * *
929403 GTTCTTGATTATGTAAAAGAAATAGTGTGAATAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
65 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* *
929468 TGCCTTACAAGCAATAGAC-CTGGGTTCGACTCCCGGCAAACGC
130 TGCCTTCCAAGCAATAGACTC-GGGTTCGACTCCCGACAAACGC
* * * * * * *
929511 AATGACAATAGCAAAAAATTAAGGAGAAAACTTTAAAAAGTAGAACGAGTAGTGTATACGTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * *
929576 TTCTTGATTGATTTTGTGTAACAAATAGTGTAAAGAAGAGGTGTTTGTAGTCAAACGGTTAGGAT
66 TTCTTGATT-A---TGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT
* * * *
929641 AATTGCCTTCCAATCAATATACTCGGGTTCGACTCCCAACAAAGGC
127 AATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * *
929687 AATTACAATGGTAAAAAATTAAGGGG-AAATGTTGAAAAGTGAAACGAGTAGTGTATACGTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * * **
929751 TTCTTGTTTATGTGAAAGAAATAGCT-TAAATAAGAGGCGTTTTTAGTACAACAATTAGGATAAT
66 TTCTTGATTATGTGAAACAAATAG-TGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * * * ** *
929815 TTCCTTCCAAACAAAAGACTCGAGTTCAACTCCCGTTAAACAC
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * * * * *
929858 AATTACGATAGTAAATATTTAAGGGGGAAATGTTT-AAAAGTAAAACAAGTATTATGTACGTGTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAAT-TTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * * *
929922 ATTCGTT-ATTATATGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAATGCTTAGGATAA
65 GTTC-TTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAA
* ** *
929986 TTGCCTTCCAAGCAATAGACTCGGGTTTGACTCCCTTCAAATG-
129 TTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * ** * *
930029 AACTACGTTAGTAAGAAATTAA-AAGAAAATTTTTTAAAAATAAAA-GAGTAGTGTATACGTGTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAA-TTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * * * * *
930092 TTTATTCATTATGTGAGACAAATAGTGTAAATAAGAGGCGTTTGTAGTCCAACGGTTATGATAAT
65 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * * * **
930157 TGCCTTCGAAGCGATAGA-TCCGGGTTTGACACCCGGCAAACAT
130 TGCCTTCCAAGCAATAGACT-CGGGTTCGACTCCCGACAAACGC
** * * * * * *
930200 AATCGCTATCGTTAAAAATTAAGGGGAGAATTTTAAAAAGTAAAACGAGTAGTGTATACATG-T-
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
** * * * * * * * *
930263 TT-TTGATTACCTGAAACAAATAGTCTGAAGATGATGCGTTCGTAGTACTACAGTTAGGATAATT
66 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * *
930327 GCCTTCCAATCAATAGACTCGAGTTCGACTCCCAACAAACGC
131 GCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * *
930369 AATTATGATAGTAACAAATTAAGGGGAAAATATTGAAAAGTAAAACGAGTAATGTATACGTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * *
930434 TTATTGATTATGTGAAACAAATAGTGTAAAGAGGA-G-G--TGTAGTCCAACGATTAGGATAATT
66 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * * *
930495 GCCTTCCAAGAAATAGACCCGGGTTAGACTCCCTACAAACGT
131 GCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * ** * * *
930537 AATTATGATAGTAAAAATTTAAGGGGAAAATTTTGAAAAGT--AATTA--AGTGTACAGGTTTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * ** * *
930598 TTCTTGATTATGTGAAACAAATAGCGTAAAGAGGAGGTGTTTGTCTTCCAACCGCTAGGATAATT
66 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * ** * *
930663 GCCTT-CTAGTCAATAAACCCGGGTTCGA-TAAGCGAAAAAGGC
131 GCCTTCCAAG-CAATAGACTCGGGTTCGACT-CCCGACAAACGC
* * ** * * *
930705 AATTTCGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCT-TGG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGT-T
** * * * ****** * * *
930768 GAAAATT-TTGAAAAT-TAAAACAGACAGTGTTTACCTTTTATGC--TTGATTACGTGAAACAAA
65 G----TTCTTGATTATGTGAAACAAATAGTG--TAAAGAAGAGGCGTTTG--TA-GT---CCAAC
** * *** * * ** * * *
930829 TATTAAAAAGAATAGGTATTTGTAGTCCAA-CAGTTAGGCT--AATT--ACCTTCCAAGCAAATG
118 GGTT----AGGATA---A-TTGCCTTCCAAGCA-ATAGACTCGGGTTCGA-CTCCCGA-CAAACG
930889 -
172 C
*
930889 AATTACGA-ATGTAAAAAATTAAGGGGGTAAA--TTG---AGT---AC------TGTATACGAT-
1 AATTACGATA-GTAAAAAATTAA-GGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACG-TG
* *
930938 TTGTTCTTGATTATGT-AAA-AGAATAGTGTGAATAAGAGGCGTTTGTAGTCCAACGGTTAGGAT
63 TTGTTCTTGATTATGTGAAACA-AATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT
*
931001 AATTGCCTTCCAAGCAATAGAC-CTGGGTTCGACTCCCGGCAAACGC
127 AATTGCCTTCCAAGCAATAGACTC-GGGTTCGACTCCCGACAAACGC
* * *
931047 -ATTGACAATAGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAGAACGAGTAGTGTATACGTGTT
1 AATT-ACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
*
931111 GTTCTTGATTGATTATGTGAAACAAATAGTGTAAAGACGA---G---GT-G---AACGGTTAGGA
65 GTTC----TTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGA
* * ** ** *
931166 TAATTGCCTTCCAATCAATATACTCGGGTTTAACTCCTAACAAAGGC
126 TAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * ** * * * *
931213 AATTATGATGGT-AAATATTAAGGGGAAAAGGTTGGAAAGTGAATCGAGTA--GTATACATGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * * ***
931275 TTCTTGTTTATGTGAAATAAATAGCT-TAAATAAGAGGCGTTTTTAGTACAATAATTAGGATAAT
66 TTCTTGATTATGTGAAACAAATAG-TGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * * ** *
931339 T-CCTTCCAAACAAAAGACTCGAGTTCAACTCCCGTTAAACAC
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * *
931381 AATTACGATAGT-AAAATTTAAGGGGAAAATGTTT-AAAACTAAAACAAGTAGTGTATACGTGTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAAT-TTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * *
931444 ATTCGTT-ATTATGTGAGACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGCTTAGGATAA
65 GTTC-TTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAA
* * * ** *
931508 TTGCCTTCCAAGCAATAGACTCGGGTTTGACTACTGTGAAATG-
129 TTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * * *
931551 AATTACGTTAGTAAGAAATTAA-AGGAAATTTTTTTAAAAGTAAAACGAGTAGTGTATACGTGTT
1 AATTACGATAGTAAAAAATTAAGGGGAAA-ATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * *
931615 -TTATTCATTATGTGAAACAAATAGTGTAAATAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
65 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* *
931679 TGCCTTCCAAGCAATAGACCCGGGTTCGACTCACGACAAACGC
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * * * * *
931722 AATGACAATAGTAAAAAAGTAAGGGGAAAATTTTAAAAAGTAGAATGAGTAGTGTATATGTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * *
931787 TTCTTGATTGATTATGTGAATCAAATAGTGTAAAGACGAGGTGTTTGTAGTCCAACGGTTAGGAT
66 TTC----TTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT
* * *
931852 AATTGCCTTCCAAGCAATATACTCGGGTTCGACTCCCAACAAAGGC
127 AATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * * *
931898 AATTATGATGGTAAAAAATTAA-GGGAAAATGTTGGAAAGTGAAACGAGTAGTGTATACGTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * * **
931962 TTCTTGTTTATGTGAAAGAAATAGCT-TAAAATAAGAGGCGTTTTTAGTACAACAATTAGGATAA
66 TTCTTGATTATGTGAAACAAATAG-TGT-AAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAA
* * * ** *
932026 TTTCCTTCCAAGCAA-AGACTCGAGTTCAACTCCCGGTAAACAC
129 TTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * * *
932069 -ATTATGATAGTAAAAATTTAAGGGGAAAGTGTTT-AAAAGTAAAACAAGTAGTGTATATGTGTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAAT-TTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * *
932132 ATTCGTT-ATTATGTGAAACTAATAGTGTCAAA-AAGAGGCGTTTGTAGTCCAACGCTTAGGATA
65 GTTC-TTGATTATGTGAAACAAATAGTGT-AAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATA
* * * * *
932195 ATTGCCTTCCAAGCAATAAAATCGGGTTTGACTCCCGA-GAATG-
128 ATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * ** ** * *
932238 AATTACGTTTGTAAGAAA-TAAAAGGAATTTTTTTAAAAGTAAAACGAGTAGTGTATACATGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
** * * * * *
932302 TTCTTGATTACCTGAAACAAATAGTGTAAAGATGATGCGTTCGTAGTACTAC-GTTAGGATAATT
66 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* *
932366 GCCTTCCAATC-ATAGACTCGGGTTCGACTCCCAACAAACGC
131 GCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * *
932407 AATTAGGATAGT-AAAAATTAAGGGGAAAATATTAAAAAGTAAAACGAGTAATGTATA--TGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * *
932469 TTATTGATTATGTGAAACAAATAGTGTAAAGAAGA-G-G--TGTAGTCCAACGTTTAGTATAATT
66 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * *
932530 GCCTTCCAAG-AA-AGAC-CCGGTTAGACTCCCTACAAAC-T
131 GCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * *** * * *
932568 AATTATGATAGTAAAAATTTAAGGGGAAAATTTTGAAAAGTAAATTAAGTAGTGTACAGGTTTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * ** * **
932633 TTCTTGACTATGTGAAACAAA-AG-CTAAAGAGGAGGTGTTTGTCTTCCGATC-ACTAGGATAAT
66 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCC-AACGGTTAGGATAAT
* * ** * *
932695 TGCCTT-CTAGTCAATA-A---AGGTTCGA-TAGGCGAAAAAGGC
130 TGCCTTCCAAG-CAATAGACTCGGGTTCGACT-CCCGACAAACGC
**
932734 AATTTTGATAGT-AAAAA-TAA-GGGAAAATTTTGAAAAGTAAAAC-AGTAGTGTAT--GTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
932793 TTCTTGATTATGTGAAA-AAATAGTGTGAAA-ACAGACAGTGACCTTTCGTTTGTAGTCC-A---
66 TTCTTGATTATGTGAAACAAATAGTGT-AAAGA-AG--AG-G------CGTTTGTAGTCCAACGG
* * *
932852 --AGGATAATTGCCTTCC-A--ATTAGAC-CGGGTTCGACTCACCAAGCAAATGC
120 TTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTC-CCGA-CAAACGC
** * *
932901 AATT-CGAATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAATTGAGTAATGTATATGTGTT
1 AATTACG-ATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
*
932965 GTTCTTGATTATGTGAAA-AGAA-A-TGTAAAG-AGAGG-TTTTGTAGTCCAACGGTTAGGATAA
65 GTTCTTGATTATGTGAAACA-AATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAA
*
933025 TTGCCTTCCAAGCAATAGACCCGGGTTCGACT-CC--CAAACGC
129 TTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * *
933066 AATTATGATAGT-AAAAATTAAGGGGAAAATTTGGAAAAAGT-AAACGAGTAGTGTATATG-GTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTG-AAAAGTAAAACGAGTAGTGTATACGTGTT
*
933128 GTTCTTGA-TATGTGAAAGAAA-AGTGTAAAG-AGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
65 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* *
933190 TGCCTT-CAATCAATA-A--CGGGTTCGACTCCC-ACAAA--A
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* *
933226 AATTATGATAGT-AAAAATTAA--GGAAAATGTTT-AAAAGTAAAACAAGTAGTGTATACGTGTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAAT-TTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* *
933287 ATTCATT-ATTA--TGAAACAAATAGTGTGTCAAA-AAGAGGCGTTTGTAGTCCAACGCTTAGGA
65 GTTC-TTGATTATGTGAAACAAATA--GTGT-AAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGA
* * * *
933348 TAATTGCCTTCCAAGCAATAAACTCGGGTTTGACTCCCGAGAAATG-
126 TAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * ** **
933394 AATTACGTTTGT-AAAAATTAAAAGG--AATTTTTTAAAGTAAAACGAGTAGTGTATACGTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
** * * * ** * * *
933456 TTCTTGATTACCTAAAACAAATAGTGTAAAGATGATGCGTTCATAGTACTACAGTTAGGATAATT
66 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * *
933521 GCCTTCCAATCAATAGACTCGGGTTCGACCCCCAACAAACGC
131 GCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* *
933563 AATTAGGATAGTAAAAAATTAAGGGGAAAATATTGAAAAGTAAAACGAGTA--GTATACGTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * *
933626 TTATTGATTATGTGAAAC-AATAGTGTAAAGAAGA---G---GTAGTCCAACGATTAGTATAATT
66 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * *
933684 GCCTTCCAAGAAATAGAC-CCGG---G--TCCCTACAAACGT
131 GCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * *** * *
933720 AATTATGATAGTAAAAATTTAAGGGG-AAATATTGAAAAGTAAATTAAGTAGTGTA-AGGT-TTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * * * * *
933782 TTCTTGA-TATGTGAAAC-AATAGCGTAAAGAGGAGGTGTTTGT-CT-GATCCGCTAGGATAATT
66 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * ** *
933843 GCCTT-CTAGTCAATAAACCCGGGTTCGA-TAGGCGA-AAGAGGC
131 GCCTTCCAAG-CAATAGACTCGGGTTCGACT-CCCGACAA-ACGC
** * * ** * *
933885 AATTTTGATAGTAAAATATT-A-GGGAAAATTTTGAAAAGTAAAACAAACAGT-T-TACCT-TGG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
** * * ****** * * ** * *
933945 AAAATT-TTGAAAAT-TAAAACAACAGT-GTTTACCTTTCATGCTTGATTACGTGAAACAAATAG
66 ----TTCTTGATTATGTGAAACAA-A-TAGTGTAAAGAAGAGGC--G-TT-TGT-AGTCCAA-CG
* * *** ** ** * * *
934007 TGTAAAGAATAGTATTTGTAGTCCAA-CGGTTAG-CT--AATT--ACCTTCCAAGCAAATG-
119 -GT-TAGGATA--A-TTGCCTTCCAAGC-AATAGACTCGGGTTCGA-CTCCCGA-CAAACGC
* * *
934062 AATTACGA-ATGTAAAAAATTAAGGGGTAAATTTTGAAAAGT-AAATGAGTAATGTATA-GTGTT
1 AATTACGATA-GTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * * * * *
934124 GTTCTTGATTATGTAAAAGAAAAAGT-TGAATAA-AGGCGCTTGTAGTCCAACGGTTAGGATAAT
65 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * *
934187 TGCCTT-CTAGCAATAGACCCGGGTTCGACT--CGGCAAACGC
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * * *
934227 AATGACAATAGTAAAAAA-TAA--GGAAAATTTTAAAAAGTAGAATGTAGT-GTGTA-ACGTGTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACG-AGTAGTGTATACGTGTT
* * *
934287 GTTCTGATTGATTATGTGAATCAAATAGTGTAAAGACG-GGTGTTTGTAGTCCAACGGTTAGGAT
65 GTTC---TTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT
* * * *
934351 AATTGCCTTCCAATCAATATACTC-GGTTCGACTCCCAACAAAGGC
127 AATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * * *
934396 AA-T---AT-GAAAAAAATTAA-GGGAAAATGTTGGAAAGTGAAACGAGTAGTGTATACATGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * * * **
934455 TTCTTGTTTATATGAAAGAAATAGCT-TAAATAAGA-GCGTTTTTAGTACAACAATTAGGATAAT
66 TTCTTGATTATGTGAAACAAATAG-TGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * * * * **
934518 TTCCTTCCAAACAA-AAACTCGAGTTCAACTCCC-AGTAAATAC
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGA-CAAACGC
* *
934560 AATTACGATAGTAAAAATTTAAGGGGAAAATGTTT-AAAAGTAAAACAAGTA--GTATACGTGTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAAT-TTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * *
934622 ATTC--G-TTAT-T-AGACAAATAGTGTAAAGAAGAGGCG-TTGTAGTCCAACGCTTAGGATAAT
65 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * ** *
934681 TGCCTTCCAAGTAATAGACTCGGGTTTGACTCCTGTGAAATG-
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * ** * * *
934723 AACTACGTTAGTAAGAAATTAAAAGGAAATTTTTTAAAAGTAAAAC-AATAGTGTATACGTGTT-
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * *
934786 TTATTCATTATGTGAAAC-AATAGTGT--A-TA-AGGCG-TTGTAGT----C--TTATGATAA-T
66 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * *
934838 GCCTT-CGAGCGATAGA-TCCGGGTT-GA----C-AAAAATCGC
131 GCCTTCCAAGCAATAGACT-CGGGTTCGACTCCCGACAAA-CGC
* * *
934874 ---T---ATAGT--TAAATTAA-GGGAGAA-TTT-ATAAAGTAAAACGAGTAGTGTATACATGTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGA-AAAGTAAAACGAGTAGTGTATACGTGTT
** * * * * * * *
934928 GTTCTTGATTACCTGAAACAAATAGTGTGAAGATGATGCGTTCGTAGTACTACAGTTAGGATAAT
65 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * *
934993 TGCCATCC-A-TAATAGACTCGGGTTCGACTCCCAACAAACGC
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* *
935034 -ATTAGGATAGTAAAAAATTAAGGGGAAAATATTGAAAAGTAAAACGAGTAGTGTATAC-TGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* *
935097 TTATTGATTATGTGAAACAAATAGTGTAAAGAAGA-G-G--TGTAGTCCAACGATTAGGATAATT
66 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * * * *
935158 GCCTTCCAAGAAATAGACCCGGGTTAGACTCCCTACAAATGT
131 GCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * ***
935200 AATTATGATTGTAAAAATTTAAGGGG-AAA-TTTGAAAAGTAAATTAAGTAGTGT-TA-GTGTTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTG-TT
* * * * ** * * *
935261 TTTCTTGATTATGTGAAACAAATAGCGTAAAGAGGAGGTGTTTGTCTTACAACCGCTAGGATAAT
65 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * ** * *
935326 TGCCTT-CTAGTCAATAAACCCGGGTTCGA-TAGGCGAAAAAGGC
130 TGCCTTCCAAG-CAATAGACTCGGGTTCGACT-CCCGACAAACGC
* * * ** *
935369 AATTTCGATGGT-AAAAATT-A-GGGAAAATTTTGAAAAGTAAAACAACAACGT-T-TACCT-TG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTA-GTGTATACGTGT-
* ** * * ****** * ** ***
935428 GGAAAATT-TTGAAAAT-TAAAACAACAT-GTTTACCTTTCATGC--TTGATTACGTGAAACAAA
64 TG----TTCTTGATTATGTGAAACAA-ATAGTGTAAAGAAGAGGCGTTTG--TA-GTCCAACGGT
* *** * * * * * * *
935488 TAGTGTAAATAATAT--ATTTGTAGTCCAATAG-TTAGGCTAAT-TACCTTCCAAGCAAATG-
121 TAG-G---ATAAT-TGCCTTCCAAG--CAATAGACTCGGGT--TCGA-CTCCCGA-CAAACGC
* * **
935546 AATTACGA-ATGT-AAAAATTAAGTGGTAAATTTTGAAAAGTAAATTGAGTAGTGTATA-GTGTT
1 AATTACGATA-GTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * *
935608 GTTCTTGATTATGT-AAAGAAATAGTATGAAA-AAGAGGC--AT-TAGTCCAACGGTTAGGATAA
65 GTTCTTGATTATGTGAAACAAATAGTGT-AAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAA
* * * *
935668 TTGCCTTCTATGCAATAAACCCGGGTTCGACTCCCGGA-AAACGC
129 TTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCC-GACAAACGC
* * * ** * * * *
935712 AATGACAATAGCAAAAAATTAAGGATAAAACTTTAAAAAGTAGAACGAGTAGTGTGTACGTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * *
935777 TTCTTGATTGATTATGTGTAACAAATAGTATAAAGACGAGGTGTTTGTAGTCAAACGGTTAGGAT
66 TTC----TTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT
* * * * *
935842 AATAGCCTTCCAATCAATATACTCGGGTTTCGACT-CCAACAAAGGC
127 AATTGCCTTCCAAGCAATAGACTCGGG-TTCGACTCCCGACAAACGC
* * * * * *
935888 AATTACAATGGTAAAAAATTAAGGGGAAAATGTTGGAAAGTGAAACGAGTAGTGTATACATGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * * * * * **
935953 TTCTTGTTTATATGAAAGAAATAGCT-TAAATAAAAAGCGTTTTTAGTACAACAATTAGGATAAT
66 TTCTTGATTATGTGAAACAAATAG-TGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * * * * **
936017 TTCCTTCCAAACAAAAGACTCGAGTTCAACTCCC-AGTAAATAC
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGA-CAAACGC
* * * *
936060 AATTACGATAGTAAAAATTTAAGGGGGAAATGTTT-AAAAGTAAAACAAGTAGTATATACGTGTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAAT-TTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * *
936124 ATTCGTT-ATTATCTGAAACAAATAGTGTAAAGAAGAGG-GTTTTGTAGTCCAACGCTTAGGATA
65 GTTC-TTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCG-TTTGTAGTCCAACGGTTAGGATA
* * *
936187 ATTGCCTTCCAAGCAATAGACTCGGGTTTGACTCCCGTCAGAACTACGA
128 ATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCG--ACAA--ACGC
* * * * *
936236 ACAGTA-GAGTAGTGTATACGTTATGTGAGACA-AATAGTGTAAATAAGAGGAATTTTTAAAAGT
1 A-ATTACGA-TA--GTA-A----A----A-A-ATTA-AG-G------GGA-AAATTTTGAAAAGT
* ** * * *
936299 AAAACGAGTAGTGTATACATGTTGTTCTTGATTACCTGAAACAAATAGTGTGAAGATGATGCGTT
42 AAAACGAGTAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTT
* * * * * * *
936364 CGTAGTACTAC-ATTAGGATAATTGCCTTCCAATCAATAGACTCGGGTTCGACTCCCAACAAACA
107 TGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACG
936428 C
172 C
* * * *
936429 AATTAGGATAGT-AAAAATTAAGGGAAAAATATTGAAAAGTAAAACGAGTAGTGTATACATGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* *
936493 TTATTGATTATGTGAAACAAATAGTGT--AGAAGA-G-G--TGTA-TCCAACGATTAGGAT-ATT
66 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * * **
936550 GCCTTCCAAGAAATAGACCCGGGTTAGACTCCC-CCAAACAT
131 GCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * *** * * *
936591 AATTATGATAGTAAAAATTTAAGGGG-AAATTTTGAAAAGTAAATTAAGTA--GTACAGGTTTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * ** * **
936653 TTCTTGACTATGTGAAACAAATAGCGTAAAGAGGA-GCTGTTTGTCTTCCGATC-ACTAGGATAA
66 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGC-GTTTGTAGTCC-AACGGTTAGGATAA
* * * * * *
936716 TTGCCTT-CTAGTCAATAAACCCGGGTTCGA-TAGGCC-AAAAAGGC
129 TTGCCTTCCAAG-CAATAGACTCGGGTTCGACT--CCCGACAAACGC
** * * ** * * *
936760 AATTTTGATAGTAAAATATTAA-GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCT-TGG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGT-T
* ** * * * ** ***** *
936823 GAAAATT-TTTAAAAT-TAAAACAGACAGTGT--TTACCTTTCGTTCTTGATTACGTGAAACAAT
65 G----TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCG-T-TTG--TA-GT----CCA-
* * * *** ** ** * * *
936884 ACTGTAAAGAATAGGTATTTGTAGTCCAA-CGGTTATG-CT--AATT--ACCTTCCAAGCAAATG
116 ACGGT-TAGGATA---A-TTGCCTTCCAAGC-AATA-GACTCGGGTTCGA-CTCCCGA-CAAACG
936943 -
172 C
* * ** *
936943 AATTACGA-ATGTCAAAAATTAAGGGGTAAA-TTTGAAAAGTAAATTGAGTAATGTATA--TG-T
1 AATTACGATA-GTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * * * * * *
937003 GTTTTTGATTATGTAAAAGAAATAGTGTGAA-TAGAGGCGCTTGTACTCCAACGGTTAGGATAAT
65 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * *
937067 TGCCTTCCAAGC-ATAGACCCGGGTTTCGACTCACGGCAAACGC
130 TGCCTTCCAAGCAATAGACTCGGG-TTCGACTCCCGACAAACGC
* * * * * *
937110 AATGACAATAGT-AAAAAGTAAGGGGAAAATTTTAAAAAGTAGAACGAGTAGTGTATATGTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * *
937174 TTCTTGATTGATTATGTGAATCAAATAGTGTAAAGACGAGGTGTTTGTAGTCCAACGGCTAGGAT
66 TTC----TTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT
* * * * * * *
937239 AATTGCATTTCAATCAATATACTCGGGTTCGACTCCCAACAAAGGT
127 AATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * * * *
937285 AATTATGATGGTAAAAAATTAAGGGGAAAATGTTGGAAAGTGAAACGAGTA--GTATAAGTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * * **
937348 TTCTTGTTTATGTGAAAGAAATAGCT-TAAATAAGAGGCGTTTTTAGTACAACAATTAGGATAAT
66 TTCTTGATTATGTGAAACAAATAG-TGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * * ** *
937412 TTCCTTCCAAACAA-AGACTCGAGTTCAACTCCCGGTAAACAC
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * *
937454 AATTACGATAGT-AAAATTTAAGGGGGAAATGTTT-AAAAGTAAAACAAGTAGTGTATATGTGTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAAT-TTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * * *
937517 ATTCGTT-ATTATGTGAAACAAATAGTGTCAAGAAGAGGCGTTTTTAGTCCAACGCTTAGGATAA
65 GTTC-TTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAA
* * * *
937581 TTGCCTTCCAAGCAATAAACTCGGGTTTGACTCCCGAGAAATG-
129 TTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * ** ** *
937624 AATTACGTTTGTAAGAAATTAAAAGGAATTTTTTTAAAAGTAAAACGAGTAGTGTATACGTG-TG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
*** * * * * * *
937688 TTCTTGATTA-CCAAAAC-AATAGTGTAAAGATGATGCGTTCGTAGTACTACAGTTAGGATAATT
66 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * *
937751 GCCTT-CAATCAATAGACTCGGGTTCGACTCCCAAC-AATGC
131 GCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* ** *
937791 AATTAATAGTGTATAGATTATAGACAAAATTAA--ATAAGATATTTTTAAAAGTAAAACGAGTAG
1 AA-T--TA-CG-ATAG----TA-A-AAAATTAAGGGGAA-A-ATTTTGAAAAGTAAAACGAGTAG
* ** * * * * *
937854 TGTATACATGTTGTTC----TTACCTGAAACAAATAGTGTGAAGATGATG-GTTCGTAGTACTAA
53 TGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGT-CCAA
* * * *
937914 CAGTTAGGATAA-TGCCTTCCAATCAATAGAC-CGGGTTCGACTCCCAAC-AACAC
117 CGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * *
937967 AATTAGGATAGT-AAAAATTAAGGGAAAAATATTGAAAAGTAAAACGAGTAGTGTATACATGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * ** * * * * **
938031 TTATTGATTACAGGTTTTG-TTCTTGACTA-TGTGAAACAA-ATAGCG--TAAAGT-----GG--
66 TTCTTGATT--A---TGTGAAAC--AAATAGTGT-AAAGAAGA-GGCGTTTGTAGTCCAACGGTT
** * ** * * * * ** * * ** * *
938084 AGG-TGTTTGTCTTCTGATCACTAGGATAATTGCCTTCTAGT--TAATAAACCC
122 AGGATAATTGCCTTCCAAGCAATA-G--ACTCGGGTTCGACTCCCGACAAACGC
** *** * * * * *
938135 GGGTT-CGATAG---GCGA--AAGAGG-CAATTTTG-ATAGT-AAA--A-TA-T-TA-A-GGGAA
1 -AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTG-T
** * * * * **** ** * * **
938184 AATT-TTGA-AAAGT-AAACAAACAGTGTTTACCTTG-GGAAAATTT-TAAAAAT-TAA--AATA
64 TGTTCTTGATTATGTGAAACAAATAGTG-TAAAGAAGAGG--CGTTTGT---AGTCCAACGGTTA
* ** * * ** * * *** * * *** *
938241 GACAGTGTTTACCTTTCGTGC--TTGATTACGTGAAACAAATAGTG-TAAA-G-
123 G-GA-TAATTGCCTTCCAAGCAATAGACT-CG-GGTTCGACTCCCGACAAACGC
* * *** * * ** ** ** * * *
938290 AA-TAGGTATTTGTAGTCCAATGGTTATGCTAATTACCTTCCAAGCAAATGAATTACGAATGTAA
1 AATTACG-A-TAGTA-AAAAAT--TAAGGGGAA--AATTTTGAA--AAGT-AA-AACG-A-GTAG
*** * * ** * * * * * * * ** *
938354 AAAATTAAGGGGTAAATT-TTGA-AAAGT-AAATTAAGTAATGTATATG-TGTTG-TTCTTGATT
53 TGTA-T-ACGTGT-TGTTCTTGATTATGTGAAA-CAAATAGTGTA-AAGAAGAGGCGT-TTG--T
* * *** ** ** * * ** * * * * * *
938414 ATGT-AAAAGAAAAAGTGAATAAGAGGCGCTT-GTAGTCCA-CGGTTAGGATAATTGCCTTCCAA
110 A-GTCCAACG-GTTAG-G-ATAA-TTGC-CTTCCAAG-CAATAGACTCGGGT--TCGACTCCCGA
*
938476 GCAATAGACCC
166 -C-A-A-ACGC
** * * *
938487 GGGTT-CGACTCACGGCAAACGCAATGACAATAAAAAAGTAAGGGGAAAATTTTAAAAAGTAGAA
1 -AATTACGA-T-A--G-TAA----A--A-AAT-------TAAGGGGAAAATTTTGAAAAGTAAAA
* * * * * * *
938551 TGAGTAGTGTACATGTGTTGTTCTTGATTGATTATGTGAATCAAATAGTGTAAAGACGAGGTGCT
46 CGAGTAGTGTATACGTGTTGTTC----TTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTT
* * * * *
938616 TGTAGTCCAATGGTTAGGATAATTGCCTTCCAATCAATATACTCGGGTTCGACTCCCAACAAAGG
107 TGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACG
938681 C
172 C
* * * * * * *
938682 AATTATGATGGTAAAATATTAAGGGGAAAATGTTGGAAAGTGAAACGAGTAGTGTATAAGTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * * **
938747 TTCTTGTTTATGTGAAAGAAATAGCT-TAAATAAGAGGCGTTTTTAGTACAACAATTAGGATATA
66 TTCTTGATTATGTGAAACAAATAG-TGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGG--ATA
* * * * * * ** *
938811 ATTTCCTTCCAAACAAAAAACTCGAGTTCAACTCCCGGTAAACAC
128 ATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* *
938856 AATTACGATAGTAAAAATTTAAGGGGAAAATGTTT-AAAAGTAAAACAAGTAGTGTATACGTGTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAAT-TTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * * *
938920 ATT-TGTTATTATGTGAGACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGCTTAGGATAA
65 GTTCT-TGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAA
* ** ** *
938984 TTGCCTTCCAAGCAATAGACTCGGGTTTGACTCTTGTGAAATG-
129 TTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * ** * * * *
939027 AATTACGTTAGTAAGAAATTAAAAGGAAATTTTTTAAAAGTAAAACGAATAGTGTATACGTGTTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * *
939092 TTATTCATTATGTGAAACAAATAGTGT-AAGTAAGAGGCGTTTGTAGTCCAACGGTTATGATAAT
66 TTCTTGATTATGTGAAACAAATAGTGTAAAG-AAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * * * * *
939156 TACCTTCGAAGCGATAGA-TCCGGGTTTGACACCCGGCAAACAC
130 TGCCTTCCAAGCAATAGACT-CGGGTTCGACTCCCGACAAACGC
** * * * * * *
939199 AATCGCTATCGTTAAAAATTAAGGGGAGAATTTT-ATAAGGTAAAACGAGTAGTGTATACATGTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGA-AAAGTAAAACGAGTAGTGTATACGTGTT
* ** * * * * * * *
939263 GTTCTTGACTACCTGAAACAAATAGTGTGAAGATGATGCGTTCGTAGTACTACAGTTAGGATAAT
65 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* ** * *
939328 TGCCATCCAATTAATAGGCTCGGGTTCGACTCCCAACAAACGC
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* *
939371 AATTAGGATAGTAAAAAATTAAGGGGAAAATATTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* *
939436 TTATTGATTATGTGAAACAAATAGTGTAAAGAAGA-G-G--TGTAGTCCAACGATTAGGATAATT
66 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * * * *
939497 GCCTTCCAAGAAATAGACCCAGGTTAGACTCCCTACAAATTG-
131 GCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAA-CGC
* * * * ***
939539 AATTATGATTGTAAAAATTTATGGGG-AAATTTTGAAAAGTAAATTAAGTAGTGTATA-GTGTTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTG-TT
* * * * ** * * *
939602 TTTCTTGATTATGTGAAACAAATAGCGTAAAGAGGAGGTGTTTGTCTTACAACCGCTAGGATAAT
65 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * ** *
939667 TGCCTT-CTAGTCAATAAACCCGGGTTCGA-TAGGCGA-AAAAGTC
130 TGCCTTCCAAG-CAATAGACTCGGGTTCGACT-CCCGACAAACG-C
* * * ** ** * * *
939710 AATTTCGATGGTAAAAAATT-A-GGGAAAATTTTGAAAAGTAAAACAAACAACGTTTACCT-TGG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGT-T
** * * ****** * * ** * *
939772 GAAAATT-TTGAAAAT-TAAAACAAACAGTGTTTACCTTTCATGCTTGATTACGTGAAACAAATA
65 G----TTCTTGATTATGTGAAACAAATAGTG--TAAAGAAGAGGC--G-TT-TGT-AGTCCAA-C
* * *** * * ** * * *
939835 GTGTAAAGAATACGTATTTGTAGTCCAA-CAGTTAGGCT--AATT--ACCTTCCAAGCAAATG-
118 G-GT-TAGGATA---A-TTGCCTTCCAAGCA-ATAGACTCGGGTTCGA-CTCCCGA-CAAACGC
* * **
939893 AATTACGA-ATGTAAAAAATTAAGTGGTAAATTTTGAAAAGTAAATTGAGTAGTGTATACGTGTT
1 AATTACGATA-GTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * * *
939957 GTTCTTGATTATGTAAAAGAAATAGTGTGAAA-AAGAGGCATTGGTAGTCCAACGGTTAGGATAA
65 GTTCTTGATTATGTGAAACAAATAGTGT-AAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAA
* * * * *
940021 TTGCCTTCTATGCAATAAACCCGGGTTCGACTCCCGGA-AAATGC
129 TTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCC-GACAAACGC
* * * ** * * * *
940065 AATAACAATAGCAAAAAATTAAGGATAAAACTTTAAAAAGTAGAACGAGTAGTGTGTACGTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * *
940130 TTCTTGATTGATTATGTGTAACAAATAGTGTAAAGACGAGGTGTTTGTAGTCAAACGGGTAGGAT
66 TTC----TTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT
* * * *
940195 AATTGCCTTCCAATCAATATACTCGGGTTCGACTCCCAACAAAGGC
127 AATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * * *
940241 AATTACAATGGTAAAAAATTAAGGGGAAAATGTTGGAAAGTGAAACGAGTAGTGTATACGTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * * * **
940306 TTCTTGTTTATATGAAAGAAATAGCT-TAAATAAGAGGAGTTT-TAGTACAACAATTAGGATAAT
66 TTCTTGATTATGTGAAACAAATAG-TGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * * * * **
940369 TTCCTTCCAAACAAAAGACTCGGGTTCAACTCCAG-TAAATAC
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * *
940411 AATTACGATAGTAAAAATTTAAGGGGGAAATGTTT-AAAAGTAAAACAAGTAGTATATACGTGTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAAT-TTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * * * *
940475 ATTCTTTATTATCTGAAACAAATAGTGTAAAGAAGAGGTGTTTGTAGTCCAACGCTTAGGATAAT
65 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * *
940540 TGCCTTCCAAGCAATAGACTCGGGTTTGACTCCCGTCAAATG-
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * ** * *
940582 AATTACGTTAGTAAGAAATTAA-AAGAAAATTTTTTAAAAGTAAAACGAGTAGTGTAGACGTGTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAA-TTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * * * * * * **
940646 TTTATTCATTATGTGAGACAAATAGTGTAAATAAGAGGAGGTGTTTTTAAAAGTAAAACGAG-TA
65 GTTCTTGATTATGTGAAACAAATAGTGT--A-AAGAAGAGGCGTTTGT---AGTCCAACG-GTTA
** ** ** * * ** *** * ** *** ** *
940710 GTGTATACA-TGTTATTCTTGATTACTTGAAAC-AAATAGTGTGAAGA-TTATGC
123 G-G-ATA-ATTG-CCTTC-CAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * * * *** * * *
940762 -GTT-CG-TAGTACTACAGTT-A--GGATAA--TTG--CCTTCCAATC-AATA--G-ACT-CG-G
1 AATTACGATAGTA-AAAAATTAAGGGGAAAATTTTGAAAAGT-AAAACGAGTAGTGTA-TACGTG
* * * * ** *
940811 --GTTC--GACTCCCA-AT-AAACACAATTAGGATAGTAAAAAATTAAGGAAAATATTGAAAAGT
63 TTGTTCTTGA-T--TATGTGAAACA-AA-TA-G-T-GTAAAGAA--GAGG--CGT-TTG--TAGT
** ** ** * ** *** ** * *** *
940870 AAAACGAG-TAGTGTATCATTGTATTGATTATGTGAAACAAATAGTGTAAAG-AAGAGTGTAGTC
113 CCAACG-GTTAG-G-AT-A----ATTGCCT-T-CCAAGC-AATAGACTCGGGTTCGACTCCCGAC
*
940933 CAACG-
167 AAACGC
* * * * * **** * *
940938 -ATTAGGATAATTGCCTTCCAAGAAA-TAGACCCGGGCTAGACTCCCCACAAACGTAATTATGA-
1 AATTACGAT-A--G---T--AAAAAATTA-A---GGG-GAAAATTTTGA-AAA-GTAA-AACGAG
* * * * *** * * * * ******
941000 TAGTAAAAATTTAAGGGGAAAATT-TTGA-AAAGT-AAATTAAGTAGTGTACAAGTTTTTTTCTT
50 TAGT----GTAT-ACGTG-TTGTTCTTGATTATGTGAAA-CAAATAGTGTA-AAG-AAGAGGC--
** * * * * ** * * * ** * * **
941062 GATTATGTGAAACAAATAGCGTAAAGAGGTGGTGTTTGTCTTTCAACCGCTAGGATATTGCCTTC
104 G-TT-TGT-AGTCCAA-CG-GT---TA-G-GATAATTGCCTTCCAAGCAATA-GA-CTCGGGTTC
* * * * *
941127 TAGT--CAATAAACCC
157 GACTCCCGACAAACGC
** *
941141 GGGTT-CGATAAGCGAAAAGGCAATTTCGATAGTAAAAATTAAGGGAAAATTTT-AAAAGTAAAA
1 -AATTACGAT-AG-TAAAA---AA-TT--A-AG----------GGGAAAATTTTGAAAAGTAAAA
* ** * * * ** * * * * ** ****** *
941204 CAAACAGTGTTTACCT-TGGGAAAATT-TTGAAAAT-TAAAACAGACATTGTTTACCTTTTG-TT
46 CGAGTAGTGTATACGTGT-TG----TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGT
* *** ** * * ** ** * * * **
941265 CTTGATTACGTGAAACAAATATTGAAAAGAATAGGTATTTGTAATCCAACAGGCT--AATT--AC
106 -TTG--TA-GT---CCAACGGTT-AGGATAAT-TG-CCTTCCAA-GCAATAGACTCGGGTTCGAC
* * **
941326 TTCCAAGCAATTG-
160 TCCCGA-CAAACGC
* *
941339 AATTATGA-ATGTAAAAAATTAAGGGG-------T--AAA-T----TGAGTAGTGTATACGTGTT
1 AATTACGATA-GTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * * *
941389 GTTCTTGATTATGTAAAAGAAATAGTGTGAATAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
65 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
*
941454 TGCCTTCCAAGCAATAGAC-CTAGGTTCGACTCCCAGA-AAACGC
130 TGCCTTCCAAGCAATAGACTC-GGGTTCGACTCCC-GACAAACGC
* * * * * *
941497 AATGACAATAGTACAATATTAAGGGGAAAATTTTAAAAAGTAGAACGAGTAGTGTATACGTTGTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACG-TGTT
** * *
941562 CGTGATTGATTATGT-TAACAAATAGTGTAAAGACGA---G---GT-G---AACGGTTAGGATAA
65 -GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAA
* * * * ** *
941616 TTGCCTTCCAATCAATATACTCGAGTTTGACTCCTAACAAAAGC
129 TTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * * * * * *
941660 AATTATGATGGTAAAATATTAAGGGGAAAATGTTGGAAAGTGAATCGAGTAGTGTATACATGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * * ***
941725 TTCTTGTTTATGTGAAAGAAATAGCT-TAAATAAGAGGCGTTTTTAGTACAATAATTAGGATAAT
66 TTCTTGATTATGTGAAACAAATAG-TGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * * * ** *
941789 TTCCTTCCAAACAAAAGACTCGAGTTCAACTCCCGTTAAACAC
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * *
941832 AATTACGATAGTAAAAATTTAAGGGGGAAATGTTT-AAAAGTAAAACAAGTAGTGTATACGTGTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAAT-TTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * *
941896 ATTAGTT-ATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGCTTAGGATAA
65 GTT-CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAA
* * *
941960 TTGCCTTCCAAGCAATAGACTCGGGTTTGACTCCCGTCAAATG-
129 TTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * * * * * *
942003 AACTACGTTAGTAAGAAATTACA-AGGAAATTTTTTAAAAGTAAAATGAGTAGCGTATACGTGTT
1 AATTACGATAGTAAAAAATTA-AGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * * * *
942067 TTTATTCATTATGTGAAACAAATAGTGTAAATAAGAGGCGTTTGTAGTCCAACGGTTATGATAAT
65 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* ** * * * * ** ** *
942132 TGCCTTCAAAGGGATA-AATCCAGGTTTGACACATGGGAAACAC
130 TGCCTTCCAAGCAATAGACT-CGGGTTCGACTCCCGACAAACGC
** * * * * * * * *
942175 AATCGCTG-TCGTTAAAAATTAAGGGGAGAATTTTAAAAAGTTAAACCAGTAGTGTATACATATT
1 AATTAC-GATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
** * * * * * *** *
942239 GTTCTTGATTACCTGAAACAAATAATGTGAAGATGATGCGTTCGTAGTAGTACAGTTAGGATAAT
65 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * *
942304 TGCCTTACAATCAATAGACTCGGGTTCGACTCCCAATAAACGC
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * *
942347 AATTACGATAGTAAACAATTAAGGGGGAAATATTGAAAAGTAAAACGAGTAGTGTATACCTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* *
942412 TTATTGATTATGTGAAACAAATAGTGTAAAGAAGA-G-G--TGTAGTCCAACGATT-GGATAATT
66 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * * * *
942472 GCCTTCCAAGAAATAGAC-C-CGTTAGACTCCCTACAAATGT
131 GCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * *** * * *
942512 AATTATGATAGTAAAAATTTAAGGGG-AAATTTTGAAAAGTAAATTAAGTAGTGTACAGGTTTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* ** * ** * * *
942576 TTCTTGGTTATGTGAAACAAA-AACGT-AAG-AGAGGTGTTTGTCTTCCAACCGCTCGGATAATT
66 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * *** * * *
942638 GCCTT-CTAGTCAATAAACTCGGGTTCGA-TAGGTGAAAAAGGA
131 GCCTTCCAAG-CAATAGACTCGGGTTCGACT-CCCGACAAACGC
* * * ** * * * *
942680 AATTTCGATAGTAAAATATTAA-GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTTCCT-TGG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGT-T
** * * ** ****** * * * ** **
942743 GAAAATT-TTGAAAAT-TAAAACAAACAGTGTTTACCTTTCGTGCTTGATTACATGAAACAAATA
65 G----TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTG--TA-GTCCAAC-GGT-
* * * * ** *** * * * * * *** *
942806 TTGTAAAGAATAGGTATTTGTAGTCTAACAG-TTAGGCTAAT-TACCTTCAAAACAAATG-
121 TAG--GATAAT-TGCCTTCCAAG-C-AATAGACTCGGGT--TCGA-C-TCCCGACAAACGC
* * ** * * *
942864 AATTACGA-ATGTAAAACATTAAGGGGTAAATTTTGAAAAGTAAATTGAGTAGGGTATACCTTTT
1 AATTACGATA-GTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * * * * * * *
942928 TTTCTTGATTATGTAAAAGAAATAGTATGAATAAGAGGCGTTTGTAGTCCAATGTTTAGGATAAT
65 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * *
942993 TGCTTTCCAAGCAATAGACCCGGGTTCGATTCCCGACAAACGC
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * * * *
943036 AATGACAATAGTAAAAAATTAAGGGTAAAATTTTAAAAAGTAGAACGAGAAGTGTATACGTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* ** * * *
943101 TTATTGATTGATTATGTGAAACAAGCAATGTAAAGACGAGGTGTTTGTAGTCCAACGGTTAGGAT
66 ---TT-CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT
* * * * * *
943166 AATTACTTTCCAATCAAT-GTACTCGGGTTCGACTCCCTAGAAAGGC
127 AATTGCCTTCCAAGCAATAG-ACTCGGGTTCGACTCCCGACAAACGC
* * * * *
943212 AATTAAGATTGTAAAAAATTAAGGGGAAAATGTTGGAAAGTGAAACGAGTAGTGTATACGTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * * * * **
943277 TTCTTGTTTATGTGAAAGAAATAGCT-TAAATAAGAGGCGTTTTTAGTACAACAATTAGGATAAT
66 TTCTTGATTATGTGAAACAAATAG-TGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* * * * * ** *
943341 TTCCTTCCAAACAAAAGACTCGAGTTCAACTCCCGGTAAACAC
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * *
943384 AATTACGATAGTTAGTAAAAATTTAAGGGGGAAATGTTT-AAAAGTAAAACAAGTAGTATATACG
1 AATTACGATAG-TA--AAAAA-TTAAGGGGAAAAT-TTTGAAAAGTAAAACGAGTAGTGTATACG
* * * **
943448 TGTTATTCATT-ATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTTTAGGCCAACACTTAGG
61 TGTTGTTC-TTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGG
* * * ** *
943512 ATAATTGCCTTCCAAGCAATAGACCCGAGTTTGACTCCCGTTAAATG-
125 ATAATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * ** * * * *
943559 AACTACGTTAGTAAGAAATTAAAAGGAAATTTTTTAAAAGTAAAACGAGTAGTGTATACCTATTT
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATA-C-GTGT
* * * *
943624 TTTTTTTAATTATGTGAAACAAATAGTGTAAATAAGAGGCGTTTGTAGTCCAACGGTTAGGATAA
64 TGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAA
* * * * * * * * *
943689 TTACCTTCGAAGCGATAGACCCGGGTTTGACACACGGCAAACAC
129 TTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
** * * * * * *
943733 AATCGCTATCGTTAAAAATTAAGGGGAGAATTTTAAAAAGTAAAACGAGTAGTGTATACATGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
** * * ** * * * *
943798 TTCTTGATTACCTGAAACAAATAGTGTGAAA-ATGATGCGTTCCTAGTACTACAGTTAGTATAAT
66 TTCTTGATTATGTGAAACAAATAGTGT-AAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* *
943862 TGCCTTCCAATCAATAGACTCGGGTTCGACTCCCAACAAACGC
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * *
943905 AATTAGGATAGTAAAACATTAAGGGGAAAATATTG-AAAGTAAAACGAGTAGTGTATACGTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* *
943969 TTATTGATTATGTGAAACAAATAGTGTAAAGAAGA-G-G--TGTAGTCCAACGATTAGGATAATT
66 TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
* * * * *
944030 GCCTTCTAAGAAATAGACTCGGGTTAGACTCCCTACAAACGT
131 GCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * *** * *
944072 AATTATGATAGTAAAAATTTAAGGGGAAAATTTTGAAAAGTAAATTAAGTAGTGTACA-GTTTGT
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGT-T
* * ** * * * * *
944136 GTTCTTGATTATGTGAAACAAATAGCGTAAAGAGGAGGTATTTGT-CTTCAATCCGCTAGGAAAA
65 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAA-CGGTTAGGATAA
* * *** * *
944200 TTGCCTT-CTAGTCAATAAACTCGGGTTCGA-TAGGTGAAAAAGGC
129 TTGCCTTCCAAG-CAATAGACTCGGGTTCGACT-CCCGACAAACGC
* * ** * * *
944244 AATTTCGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCATG-G
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATA-CGTGTT
* * * ** ****** * * ** ***
944307 GAAAATT-TTGA-AACT-TAAAACAAACAGTGTTTACCTTTCGTGCTTGATTACGTGAAACAAAT
65 G----TTCTTGATTA-TGTGAAACAAATAGTGTAAAGAAGAGGCGTTTG--TA-GTCCAACGGTT
* ** *** * * * * * * * * *
944369 AGCGTAAATAATAGGTATTTGTAGTC-CTACAGTTAGGCTAAT-TACCTTCCAAGCAAATG-
122 AG-G---ATAAT-TGCCTTCCAAG-CAATAGA-CTCGGGT--TCGA-CTCCCGA-CAAACGC
* * **
944428 AATTACGA-ATGTAAAAAATTAACGGGTAAATTTTGAAAAGTAAATTGAGTAGTGTATACGTGTT
1 AATTACGATA-GTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTT
* * * *
944492 GTTCTTGATTATGT-AAAGAAATGGTGTGAATAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
65 GTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
* *
944556 TGCCTTCCAAGCAATAGACCCGGGTTCTACTCCCGGA-AAACGC
130 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCC-GACAAACGC
* * * *
944599 AATGACAATAGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAGAACGAGTAGTGTATACGTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* * *
944664 TTCTTGATTGATTATGTGAAACAAATAGTGTAAAGACGAGGTGTTTGTAGTCAAACGGTTAGGAT
66 TTC----TTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGAT
* * * * * * * *
944729 AATTGCATTCTAATCAATATACTCGAGTTTGACTCCCAACAAAGGC
127 AATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
* * * * * **
944775 AATTACGTTGGTAAAAAATTAAGGGGAAAATGTTGGAAAGTGAAACGAGTAGTGTATGTGTGTTG
1 AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
* *
944840 TTCTTGTTTATGTGAAATAAATAG
66 TTCTTGATTATGTGAAACAAATAG
944864 CTTTATATAA
Statistics
Matches: 12502, Mismatches: 3243, Indels: 2331
0.69 0.18 0.13
Matches are distributed among these distances:
140 1 0.00
141 13 0.00
142 19 0.00
143 21 0.00
144 8 0.00
145 4 0.00
146 4 0.00
147 4 0.00
148 8 0.00
149 9 0.00
150 2 0.00
151 1 0.00
152 2 0.00
153 2 0.00
154 17 0.00
155 78 0.01
156 60 0.00
157 83 0.01
158 89 0.01
159 85 0.01
160 112 0.01
161 45 0.00
162 243 0.02
163 423 0.03
164 489 0.04
165 291 0.02
166 306 0.02
167 550 0.04
168 910 0.07
169 562 0.04
170 1040 0.08
171 1299 0.10
172 2225 0.18
173 320 0.03
174 302 0.02
175 243 0.02
176 1208 0.10
177 151 0.01
178 109 0.01
179 89 0.01
180 41 0.00
181 49 0.00
182 95 0.01
183 120 0.01
184 150 0.01
185 124 0.01
186 37 0.00
187 18 0.00
188 9 0.00
189 9 0.00
190 11 0.00
191 3 0.00
192 9 0.00
193 8 0.00
194 4 0.00
195 8 0.00
196 8 0.00
197 55 0.00
198 84 0.01
199 14 0.00
200 11 0.00
201 22 0.00
202 22 0.00
203 6 0.00
204 37 0.00
205 21 0.00
206 22 0.00
207 31 0.00
208 17 0.00
209 6 0.00
210 11 0.00
211 5 0.00
212 8 0.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (172 bp):
AATTACGATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTG
TTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
GCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGACAAACGC
Found at i:930770 original size:39 final size:39
Alignment explanation
Indices: 930727--930804 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
930717 AAAAAATTAA
930727 GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTT
1 GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTT
* *
930766 GGGAAAATTTTGAAAATTAAAACAGACAGTGTTTACCTT
1 GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTT
930805 TTATGCTTGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.42, C:0.10, G:0.18, T:0.29
Consensus pattern (39 bp):
GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTT
Found at i:933142 original size:495 final size:482
Alignment explanation
Indices: 929329--933689 Score: 1799
Period size: 518 Copynumber: 8.6 Consensus size: 482
929319 TAATTACCTT
* * ** *
929329 CCAAGCAAATG-AATTACGA-ATGTAAAAATTAAGGGGTAAATTTTGAAAAGTAAATTGAGTAGT
1 CCAAGCAAATGCAATT-CGATA-GTAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAAT
*
929392 GTATACGTGTTGTTCTTGATTATGTAAAAGAAATAGTGTGAATA-AGAGGCGTTTGTAGTCCAAC
64 GTATA-GTGTTGTTCTTGATTATGTGAAA-AAATAGTGT-AA-AGAGA-G-GTTTGTAGTCCAAC
* * * * **
929456 GGTTAGGATAATTGCCTTACAAGCAATAGACCTGGGTTCGACTCCCGGCAAACGCAATGACAATA
123 GGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACT-CC-ACAAACGCAATTATGATA
* * * *
929521 GCAAAAAATTAAGGAGAAAACTTTAAAAAGTAGAACGAGTAGTGTATACGTGTTGTTCTTGATTG
186 G-TAAAAATTAAGGGGAAAA-TTTGAAAAGTA-AACGAGTAGTGTATA-G-GTTGTTCTTGACT-
* * * * **
929586 ATTTTGTGTAACAAATAGTGTAAAGAAGAGGTGTTTGTAGTCAAACGGTTAGGATAATTGCCTTC
245 A---TGTGAAACAAA-AGTCTAAAG-AGAGGCGTTTGTAGTCCAACGACTAGGATAATTGCCTT-
* * ** * *
929651 CAATCAATATACTCGGGTTCGACTCCCAACAAAGGCAATTACAATGGTAAAAAATTAAGGGGAAA
304 CAATCAATA-A--CAGGTTCGACTCCC-ACAAA--AAATTATGATAGT-AAAAATTAA-GGAAAA
* * * * * *
929716 TGTTGAAAAGTGAAACGAGTAGTGTATACGTGTTGTTC-TTGTTTATGTGAAAGAAATAGCT-T-
361 TGTTTAAAAGTAAAACAAGTAGTGTATA-GTGTTATTCATT-ATTA--TGAAACAAATAG-TGTG
* * * ** *
929778 -AAATAAGAGGCGTTTTTAGTACAACAATTAGGATAATTTCCTTCCAAACAAAAGACTCGAGTTC
421 CAAA-AAGAGGCGTTTGTAGT-C--CAA-CAGGATAATTGCCTTCC--A-ATTAGACTCGGGTTC
*
929842 AACTC
478 GACTC
* ** * * *
929847 CC--GTTAAACACAATTACGATAGTAAATATTTAAGGGGGAAATGTTT-AAAAGTAAAACAAGTA
1 CCAAG-CAAATGCAATT-CGATAGTAAA-AATTAAGGGGAAAAT-TTTAAAAAGTAAAACGAGTA
* * *
929909 TTATGTA-CGTGTTATTCGTT-ATTATATGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCC
62 --ATGTATAGTGTTGTTC-TTGATTATGTGAAA-AAATAGTGTAAAG-AGA-G-GTTTGTAGTCC
* * * * * * * *
929972 AATGCTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTTGACTCCCTTCAAATG-AACTACG
120 AACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACT-CC-ACAAACGCAATTATG
* ** * * * * * *
930036 TTAGTAAGAAATTAA-AAGAAAATTTTTTAAAAATAAAAGAGTAGTGTATACGTGTTTTTATTCA
183 ATAGTAA-AAATTAAGGGGAAAA--TTTGAAAAGTAAACGAGTAGTGTATA-G-GTTGTTCTTGA
* * * * ** *
930100 TTATGTGAGACAAATAGTGTAAATAAGAGGCGTTTGTAGTCCAACGGTTATGATAATTGCCTTCG
243 CTATGTGAAACAAA-AGTCTAAA-GAGAGGCGTTTGTAGTCCAACGACTAGGATAATTGCCTTC-
* * * * * * * * * *
930165 AAGCGATAGATCCGGGTTTGACACCCGGC-AAACATAATCGCTATCGTTAAAAATTAAGGGGAGA
305 AATCAATA-A--CAGGTTCGACTCCC-ACAAAAAATTAT-G--ATAG-TAAAAATTAA--GGAAA
* * * * ** *
930229 AT-TTTAAAAAGTAAAACGAGTAGTGTATACATGTTTTTGATTA-CCTGAAACAAATAGTCTG-A
360 ATGTTT-AAAAGTAAAACAAGTAGTGTATA-GTGTTATTCATTATTATGAAACAAATAGTGTGCA
* * * * ** *
930291 AGATGATGCGTTCGTAGTACTACAGTTAGGATAATTGCCTTCCAATCAATAGACTCGAGTTCGAC
423 AAAAGAGGCGTTTGTAGT-C--CA-ACAGGATAATTGCCTTCCAAT---TAGACTCGGGTTCGAC
930356 TC
481 TC
* * * *
930358 CCAA-CAAACGCAATTATGATAGTAACAAATTAAGGGGAAAATATTGAAAAGTAAAACGAGTAAT
1 CCAAGCAAATGCAATT-CGATAGTAA-AAATTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAAT
* *
930422 GTATACGTGTTGTTATTGATTATGTGAAACAAATAGTGTAAAGAGGAGG--TGTAGTCCAACGAT
64 GTATA-GTGTTGTTCTTGATTATGTGAAA-AAATAGTGTAAAGA-GAGGTTTGTAGTCCAACGGT
* * *
930485 TAGGATAATTGCCTTCCAAGAAATAGACCCGGGTTAGACTCCCTACAAACGTAATTATGATAGTA
126 TAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACT-CC-ACAAACGCAATTATGATAGTA
** * *
930550 AAAATTTAAGGGGAAAATTTTGAAAAGT-AATTA--AGTGTACAGGTTTTGTTCTTGATTATGTG
189 AAAA-TTAAGGGGAAAA-TTTGAAAAGTAAACGAGTAGTGTATAGG--TTGTTCTTGACTATGTG
* ** *
930612 AAACAAATAG-CGTAAAGAGGAGGTGTTTGTCTTCCAACCG-CTAGGATAATTGCCTTCTAGTCA
250 AAACAAA-AGTC-TAAAGA-GAGGCGTTTGTAGTCCAA-CGACTAGGATAATTGCCTTC-AATCA
* * *
930675 ATAAACCCGGGTTCGA-TAAGCGA-AAAAGGCAATT-TCGATAGTAAAAAATTAAGGGAAAAT-T
310 AT-AA--CAGGTTCGACT--CCCACAAAA---AATTAT-GATAGT-AAAAATTAA-GGAAAATGT
** * * * ** * *
930736 TTGAAAAGTAAAACAAACAGTGTTTACCTTGGGAAAATT-TTGAAAATTA--AAACAGACAGTGT
364 TT-AAAAGTAAAACAAGTAGTG--TA--TAGTG----TTATTCATTATTATGAAACAAATAGTGT
** ***** * * * * ** * * * *
930798 TTACCTTTTATGC--TTGATTACGT-GAA-A-CA-AA-T--ATT--AAAAAGAATAGGTATTTGT
420 GCA-AAAAGAGGCGTTTG--TA-GTCCAACAGGATAATTGCCTTCCAATTAGACTCGG-GTTCG-
*
930852 AGT-
479 ACTC
* * ** * ** * ** ***
930855 CCAA-CAGTTAGGCTAATTACCTTCCAAGCAAATGAATTACGAATGTAAAAAATTAAGGGGGTAA
1 CCAAGCA--AATGC-AATT-CGAT---AGTAAA--AATTA--AGGGGAAAATTTTAA-AAAGTAA
** *
930919 ATTGAGTACTGTATACGAT-TTGTTCTTGATTATGT-AAAAGAATAGTGTGAATA-AGAGGCGTT
54 AACGAGTAATGTATA-G-TGTTGTTCTTGATTATGTGAAAA-AATAGTGT-AA-AGAGA-G-GTT
* *
930981 TGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCTGGGTTCGACTCCCGGCAAACG
112 TGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACT-CC-ACAAACG
** *
931046 C-ATTGACAATAGTAAAAAATTAAGGGGAAAATTTTAAAAAGTAGAACGAGTAGTGTATACGTGT
175 CAATT-ATGATAGT-AAAAATTAAGGGGAAAA-TTTGAAAAGTA-AACGAGTAGTGTATA-G-GT
* * **
931110 TGTTCTTGATTGATTATGTGAAACAAATAGTGTAAAGACGA---G---GT-G---AACGGTTAGG
234 TGTTC----TTGACTATGTGAAACAAA-AGTCTAAAGA-GAGGCGTTTGTAGTCCAACGACTAGG
* ** * * * *
931165 ATAATTGCCTTCCAATCAATATACTCGGGTTTAACTCCTAACAAAGGCAATTATGATGGTAAATA
293 ATAATTGCCTT-CAATCAATA-A--CAGGTTCGACTCC-CACAAA--AAATTATGATAGTAAAAA
* ** * * * * * * * *
931230 TTAAGGGGAAAAGGTTGGAAAGTGAATCGAGTAGTATACA-TGTTGTTC-TTGTTTATGTGAAAT
351 TTAA--GGAAAATGTTTAAAAGTAAAACAAGTAGTGTATAGTGTTATTCATT-ATTA--TGAAAC
* * * **
931293 AAATAGCT-T--AAATAAGAGGCGTTTTTAGTACAATAATTAGGATAATT-CCTTCCAAACAAAA
411 AAATAG-TGTGCAAA-AAGAGGCGTTTGTAGT-C--CAA-CAGGATAATTGCCTTCC--A-ATTA
* *
931354 GACTCGAGTTCAACTC
467 GACTCGGGTTCGACTC
* ** * * * *
931370 CC--GTTAAACACAATTACGATAGTAAAATTTAAGGGGAAAATGTTT-AAAACTAAAACAAGTAG
1 CCAAG-CAAATGCAATT-CGATAGTAAAAATTAAGGGGAAAAT-TTTAAAAAGTAAAACGAGTAA
* *
931432 TGTATACGTGTTATTCGTT-ATTATGTGAGACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAA
63 TGTATA-GTGTTGTTC-TTGATTATGTGA-AAAAATAGTGTAAAG-AGA-G-GTTTGTAGTCCAA
* * * *** * * *
931496 CGCTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTTGACTACTGTGAAATG-AATTACGTT
122 CGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACT-C-CACAAACGCAATTATGAT
* * * * * *
931560 AGTAAGAAATTAA-AGGAAATTTTTTTAAAAGTAAAACGAGTAGTGTATACGTGTT-TTATTCAT
185 AGTAA-AAATTAAGGGGAAA--ATTTGAAAAGT-AAACGAGTAGTGTATA-G-GTTGTTCTTGAC
* * **
931623 TATGTGAAACAAATAGTGTAAATAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCA
244 TATGTGAAACAAA-AGTCTAAA-GAGAGGCGTTTGTAGTCCAACGACTAGGATAATTGCCTT-CA
* * * * * ** *
931688 AGCAATAGACCCGGGTTCGACTCACGACAAACGCAATGACAATAGTAAAAAAGTAAGGGGAAAAT
306 ATCAATA-A--CAGGTTCGACTC-CCACAAA--AAATTATGATAGT-AAAAATTAA--GGAAAAT
* ** * *
931753 -TTTAAAAAGTAGAATGAGTAGTGTATATGTGTTGTTCTTGATTGATTATGTGAATCAAATAGTG
362 GTTT-AAAAGTAAAACAAGTAGTGTATA-GTGTTATTC---ATT-ATTA--TGAAACAAATAGTG
* * * *
931817 T--AAAGACGAGGTGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATATACTCGGGT
419 TGCAAA-AAGAGGCGTTTGTAGTCCAAC----AGGATAATTGCCTTCC-A--ATTAGACTCGGGT
931880 TCGACTC
476 TCGACTC
* * * * ** * *
931887 CCAA-CAAAGGCAATTATGATGGTAAAAAATTAA-GGGAAAATGTTGGAAAGTGAAACGAGTAGT
1 CCAAGCAAATGCAATT-CGATAGT-AAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAAT
* * * *
931950 GTATACGTGTTGTTCTTGTTTATGTGAAAGAAATAGCT-TAAAATAAGAGGCGTTTTTAGTACAA
64 GTATA-GTGTTGTTCTTGATTATGTGAAA-AAATAG-TGT-AAA-GAGA-G-GTTTGTAGTCCAA
** * * * * *
932014 CAATTAGGATAATTTCCTTCCAAGCAA-AGACTCGAGTTCAACTCC-CGGTAAACAC-ATTATGA
122 CGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCAC---AAACGCAATTATGA
* * * *
932076 TAGTAAAAATTTAAGGGGAAAGTGTTTAAAAGTAAAACAAGTAGTGTATATGTGTTATTCGTT-A
184 TAGTAAAAA-TTAAGGGGAAAAT-TTGAAAAGT-AAACGAGTAGTGTATA-G-GTTGTTC-TTGA
* * * *
932140 TTATGTGAAACTAATAGTGTCAAAAAGAGGCGTTTGTAGTCCAACG-CTTAGGATAATTGCCTTC
243 CTATGTGAAAC-AAAAGTCT-AAAGAGAGGCGTTTGTAGTCCAACGAC-TAGGATAATTGCCTT-
* * * * ** * * * * ** *
932204 CAAGCAATAAAATCGGGTTTGACTCCCGAGAATGAATTACGTTTGTAAGAAATAAAAGGAATTTT
304 CAATCAAT--AA-CAGGTTCGACTCCC-ACAAAAAATTATGATAGTAA-AAAT-TAAGGAAAATG
* * *
932269 TTTAAAAGTAAAACGAGTAGTGTATACATGTTGTTC-TTGATTACCTGAAACAAATAGTGT--AA
363 TTTAAAAGTAAAACAAGTAGTGTATA-GTGTTATTCATT-ATTA--TGAAACAAATAGTGTGCAA
* * * * *
932331 AGATGATGCGTTCGTAGTACTACGTTAGGATAATTGCCTTCCAATCATAGACTCGGGTTCGACTC
424 A-AAGAGGCGTTTGTAGTCCAAC---AGGATAATTGCCTTCCAAT--TAGACTCGGGTTCGACTC
* * *
932396 CCAA-CAAACGCAATTAGGATAGTAAAAATTAAGGGGAAAATATTAAAAAGTAAAACGAGTAATG
1 CCAAGCAAATGCAATT-CGATAGTAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAATG
* *
932460 TATA-TGTTGTTATTGATTATGTGAAACAAATAGTGTAAAGAAGAGG--TGTAGTCCAACGTTTA
65 TATAGTGTTGTTCTTGATTATGTGAAA-AAATAGTGTAAAG-AGAGGTTTGTAGTCCAACGGTTA
* * *
932522 GTATAATTGCCTTCCAAG-AA-AGACCC-GGTTAGACTCCCTACAAAC-TAATTATGATAGTAAA
128 GGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACT-CC-ACAAACGCAATTATGATAGTAAA
** *
932583 AATTTAAGGGGAAAATTTTGAAAAGTAAATTAAGTAGTGTACAGGTTTTGTTCTTGACTATGTGA
191 AA-TTAAGGGGAAAA-TTTGAAAAGTAAA-CGAGTAGTGTATAGG--TTGTTCTTGACTATGTGA
* ** * *
932648 AACAAAAG-CTAAAGAGGAGGTGTTTGTCTTCCGATC-ACTAGGATAATTGCCTTCTAGTCAATA
251 AACAAAAGTCTAAAGA-GAGGCGTTTGTAGTCC-AACGACTAGGATAATTGCCTTC-AATCAATA
* * *
932711 A-AGGTTCGA-TAGGCGA-AAAAGGCAATTTTGATAGTAAAAA-TAAGGGAAAAT-TTTGAAAAG
313 ACAGGTTCGACT--CCCACAAAA---AATTATGATAGTAAAAATTAA-GGAAAATGTTT-AAAAG
*
932771 TAAAAC-AGTAGTGTAT-GTGTTGTTC-TTGATTATGTGAAA-AAATAGTGTG-AAAACAGACAG
371 TAAAACAAGTAGTGTATAGTGTTATTCATT-ATTA--TGAAACAAATAGTGTGCAAAA-AG--AG
932831 TGACCTTTCGTTTGTAGTCC-A-AGGATAATTGCCTTCCAATTAGAC-CGGGTTCGACTC
430 -G------CGTTTGTAGTCCAACAGGATAATTGCCTTCCAATTAGACTCGGGTTCGACTC
* **
932888 ACCAAGCAAATGCAATTCGAATAGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAATTGAGTAA
1 -CCAAGCAAATGCAATTCG-ATAGT-AAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAA
932953 TGTATATGTGTTGTTCTTGATTATGTGAAAAGAA-A-TGTAAAGAGAGGTTTTGTAGTCCAACGG
63 TGTATA-GTGTTGTTCTTGATTATGTGAAAA-AATAGTGTAAAGAGAGG-TTTGTAGTCCAACGG
933016 TTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCC-CAAACGCAATTATGATAGTAA
125 TTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCACAAACGCAATTATGATAGTAA
933080 AAATTAAGGGGAAAATTTGGAAAAAGTAAACGAGTAGTGTATATGGTTGTTCTTGA-TATGTGAA
190 AAATTAAGGGGAAAATTT-G-AAAAGTAAACGAGTAGTGTATA-GGTTGTTCTTGACTATGTGAA
* * ** *
933144 AGAAAAGTGTAAAGAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCAATCAATAACGG
252 ACAAAAGTCTAAAGAGAGGCGTTTGTAGTCCAACGACTAGGATAATTGCCTTCAATCAATAACAG
933209 GTTCGACTCCCACAAAAAATTATGATAGTAAAAATTAAGGAAAATGTTTAAAAGTAAAACAAGTA
317 GTTCGACTCCCACAAAAAATTATGATAGTAAAAATTAAGGAAAATGTTTAAAAGTAAAACAAGTA
933274 GTGTATACGTGTTATTCATTATTATGAAACAAATAGTGTGTCAAAAAGAGGCGTTTGTAGTCCAA
382 GTGTATA-GTGTTATTCATTATTATGAAACAAATAGTGTG-CAAAAAGAGGCGTTTGTAGTCCAA
* * *
933339 CGCTTAGGATAATTGCCTTCCAAGCAATAAACTCGGGTTTGACTC
445 --C--AGGATAATTGCCTTCC-A--ATTAGACTCGGGTTCGACTC
* * * ** ** *
933384 CCGAG-AAATG-AATTACGTTTGTAAAAATTAAAAGG--AATTTTTTAAAGTAAAACGAGTAGTG
1 CCAAGCAAATGCAATT-CGATAGTAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAATG
** * ** * * *
933445 TATACGTGTTGTTCTTGATTACCTAAAACAAATAGTGTAAAGATGATGCGTTCATAGTACTACAG
65 TATA-GTGTTGTTCTTGATTATGTGAAA-AAATAGTGTAAAGA-GA-G-GTTTGTAGTCCAACGG
* * * *
933510 TTAGGATAATTGCCTTCCAATCAATAGACTCGGGTTCGACCCCCAACAAACGCAATTAGGATAGT
125 TTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGA-CTCC-ACAAACGCAATTATGATAGT
* *
933575 AAAAAATTAAGGGGAAAATATTGAAAAGTAAAACGAGTA--GTATACGTGTTGTTATTGATTATG
188 -AAAAATTAAGGGGAAAAT-TTGAAAAGT-AAACGAGTAGTGTATA-G-GTTGTTCTTGACTATG
* * * * *
933638 TGAAACAATAGTGTAAAGA-A-GAG---GTAGTCCAACGATTAGTATAATTGCCTTC
248 TGAAACAAAAGTCTAAAGAGAGGCGTTTGTAGTCCAACGACTAGGATAATTGCCTTC
933690 CAAGAAATAG
Statistics
Matches: 3043, Mismatches: 503, Indels: 619
0.73 0.12 0.15
Matches are distributed among these distances:
486 12 0.00
487 1 0.00
490 57 0.02
491 26 0.01
492 82 0.03
493 89 0.03
494 121 0.04
495 152 0.05
496 64 0.02
497 132 0.04
498 116 0.04
499 59 0.02
500 103 0.03
501 14 0.00
502 36 0.01
503 19 0.01
504 120 0.04
505 187 0.06
506 44 0.01
507 150 0.05
508 103 0.03
509 169 0.06
510 155 0.05
511 198 0.07
512 28 0.01
513 91 0.03
514 51 0.02
515 48 0.02
516 81 0.03
517 193 0.06
518 206 0.07
519 126 0.04
520 6 0.00
521 4 0.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.29
Consensus pattern (482 bp):
CCAAGCAAATGCAATTCGATAGTAAAAATTAAGGGGAAAATTTTAAAAAGTAAAACGAGTAATGT
ATAGTGTTGTTCTTGATTATGTGAAAAAATAGTGTAAAGAGAGGTTTGTAGTCCAACGGTTAGGA
TAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCACAAACGCAATTATGATAGTAAAAATTA
AGGGGAAAATTTGAAAAGTAAACGAGTAGTGTATAGGTTGTTCTTGACTATGTGAAACAAAAGTC
TAAAGAGAGGCGTTTGTAGTCCAACGACTAGGATAATTGCCTTCAATCAATAACAGGTTCGACTC
CCACAAAAAATTATGATAGTAAAAATTAAGGAAAATGTTTAAAAGTAAAACAAGTAGTGTATAGT
GTTATTCATTATTATGAAACAAATAGTGTGCAAAAAGAGGCGTTTGTAGTCCAACAGGATAATTG
CCTTCCAATTAGACTCGGGTTCGACTC
Found at i:933954 original size:36 final size:36
Alignment explanation
Indices: 933907--933979 Score: 112
Period size: 36 Copynumber: 2.0 Consensus size: 36
933897 AAAATATTAG
933907 GGAAAATTTTGAAAAGTAAAACAAACA-GTTTACCTT
1 GGAAAATTTTGAAAAGTAAAAC-AACAGGTTTACCTT
*
933943 GGAAAATTTTGAAAATTAAAACAACAGTGTTTACCTT
1 GGAAAATTTTGAAAAGTAAAACAACAG-GTTTACCTT
933980 TCATGCTTGA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
35 4 0.12
36 21 0.62
37 9 0.26
ACGTcount: A:0.45, C:0.11, G:0.14, T:0.30
Consensus pattern (36 bp):
GGAAAATTTTGAAAAGTAAAACAACAGGTTTACCTT
Found at i:934832 original size:35 final size:35
Alignment explanation
Indices: 934765--934832 Score: 84
Period size: 35 Copynumber: 1.9 Consensus size: 35
934755 TTTAAAAGTA
* * *
934765 AAACAATAGTGTATACGTGTTTTATTCATTATGTG
1 AAACAATAGTGTATACGCGTTGTAGTCATTATGTG
*
934800 AAACAATAGTGTATAAGGCGTTGTAGTC-TTATG
1 AAACAATAGTGTAT-ACGCGTTGTAGTCATTATG
934833 ATAATGCCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
35 19 0.68
36 9 0.32
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (35 bp):
AAACAATAGTGTATACGCGTTGTAGTCATTATGTG
Found at i:935276 original size:165 final size:164
Alignment explanation
Indices: 934900--938040 Score: 594
Period size: 170 Copynumber: 18.2 Consensus size: 164
934890 GAGAATTTAT
* ** * *
934900 AAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTACCTGAAACAAATAGTGTGAAGATGAT
1 AAAGTAAAACAAGTAGTGTATAC-TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGA-
* * * *
934965 GCGTTCGTAGTACTACAGTTAGGATAATTGCCATCCATAATAGACTCGGGTTCGACTCCCAACAA
64 G-G-T-GTAGTACAACAGTTAGGATAATTGCCATCCAAAATAGACCCGGGTTAGACTCCCAACAA
*
935030 ACGCATTAGGATAGTAAAAAATTAAGGGGAAAATATTGA
126 ACGAATTAGGATAGTAAAAAATTAAGGGGAAAATATTGA
* *
935069 AAAGTAAAACGAGTAGTGTATACTGTTGTTATTGATTATGTGAAACAAATAGTGTAAAGAAGAGG
1 AAAGTAAAACAAGTAGTGTATACTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGG
* * * *
935134 TGTAGTCCAAC-GATTAGGATAATTGCCTTCCAAGAAATAGACCCGGGTTAGACTCCCTACAAAT
66 TGTAGTACAACAG-TTAGGATAATTGCCATCC-A-AAATAGACCCGGGTTAGACTCCCAACAAAC
* * *
935198 GTAATTATGATTGTAAAAATTTAAGGGG-AAAT-TTGA
128 G-AATTAGGATAGTAAAAAATTAAGGGGAAAATATTGA
** * * * *
935234 AAAGTAAATTAAGTAGTGT-TAGTGTTTTTTCTTGATTATGTGAAACAAATAGCGTAAAGAGGAG
1 AAAGTAAAACAAGTAGTGTATACTG-TTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAG
* * * * * * * * * *
935298 GTGTTTGTCTTACAACCGCTAGGATAATTGCCTTCTAGTCAATAAACCCGGGTTCGA-TAGGCGA
65 GTG-TAG---TACAACAGTTAGGATAATTGCCATCCA--AAATAGACCCGGGTTAGACT--CCCA
* ** * *
935362 A-AAAGGCAATTTCGATGGT-AAAAATT-A-GGGAAAATTTTGA
122 ACAAACG-AATTAGGATAGTAAAAAATTAAGGGGAAAATATTGA
** * ** * * *
935402 AAAGTAAAACAACAACGT-T-TACCT-TGGGAAAATT-TTGAAAAT-TAAAACAACAT-GTTTAC
1 AAAGTAAAACAAGTA-GTGTATA-CTGT-TG----TTCTTGATTATGTGAAACAA-ATAGTGTAA
***** * * ** * *
935461 CTTTCATGCTTGATTACGTGAAACAAATAGTGTAAATAATATATTTG-TAGTCC--AATAGTTAG
58 AGAAGA-G-GTG--TA-GT---AC-AACAGT-T--AGGATA-A-TTGCCA-TCCAAAATAG--AC
* *** * * * * * * *
935523 GCTAATTA-CCTTCCAAGCAAATGAATTACGA-ATGT-AAAAATTAAGTGGTAAATTTTGA
106 CCGGGTTAGACTCCCAA-CAAACGAATTAGGATA-GTAAAAAATTAAGGGGAAAATATTGA
*** * * *
935581 AAAGTAAATTGAGTAGTGTATAGTGTTGTTCTTGATTATGT-AAAGAAATAGTATGAAA-AAGAG
1 AAAGTAAAACAAGTAGTGTATACTGTTGTTCTTGATTATGTGAAACAAATAGTGT-AAAGAAGAG
* * * * * * * *
935644 GCAT-TAGTCCAACGGTTAGGATAATTGCCTTCTATGCAATAAACCCGGGTTCGACTCCCGGA-A
65 G--TGTAGTACAACAGTTAGGATAATTGCCATCCA--AAATAGACCCGGGTTAGACTCCC-AACA
* ** * ** *
935707 AACGCAATGACAATAGCAAAAAATTAAGGATAAAACT-TTAA
125 AACG-AATTAGGATAGTAAAAAATTAAGGGGAAAA-TATTGA
* * * * *
935748 AAAGTAGAACGAGTAGTGTGTACGTGTTGTTCTTGATTGATTATGTGTAACAAATAGTATAAAGA
1 AAAGTAAAACAAGTAGTGTATAC-TGTTGTTC----TTGATTATGTGAAACAAATAGTGTAAAGA
* * * * * * * *
935813 CGAGGTGTTTGTAGTCAAACGGTTAGGATAATAGCCTTCCAATCAATATACTCGGGTTTCGACT-
61 AGAGGTG-TAGTA--C-AACAGTTAGGATAATTGCCATCCAA--AATAGACCCGGG-TTAGACTC
* ** * * *
935877 CCAACAAAGGCAATTACAATGGTAAAAAATTAAGGGGAAAATGTTGG
119 CCAACAAACG-AATTAGGATAGTAAAAAATTAAGGGGAAAATATTGA
* * * * * * *
935924 AAAGTGAAACGAGTAGTGTATACATGTTGTTCTTGTTTATATGAAAGAAATAGCT-TAAATAAAA
1 AAAGTAAAACAAGTAGTGTATAC-TGTTGTTCTTGATTATGTGAAACAAATAG-TGTAAA-GAAG
* * * * * * *
935988 AGCGTTTTTAGTACAACAATTAGGATAATTTCCTTCCAAACAAAAGACTCGAGTTCA-ACTCCCA
63 AG-G--TGTAGTACAACAGTTAGGATAATTGCCATCC-AA-AATAGACCCGGGTT-AGACTCCCA
* * * * *
936052 GTA-AATAC-AATTACGATAGTAAAAATTTAAGGGGGAAATGTTTA
122 --ACAA-ACGAATTAGGATAGTAAAAAATTAAGGGGAAAATATTGA
* * *
936096 AAAGTAAAACAAGTAGTATATACGTGTTATTCGTT-ATTATCTGAAACAAATAGTGTAAAGAAGA
1 AAAGTAAAACAAGTAGTGTATAC-TGTTGTTC-TTGATTATGTGAAACAAATAGTGTAAAGAAGA
* * * *
936160 GGGTTTTGTAGTCCAAC-GCTTAGGATAATTGCCTTCCAAGCAATAGACTCGGGTTTGACTCCCG
64 -GG---TGTAGTACAACAG-TTAGGATAATTGCCATCCAA--AATAGACCCGGGTTAGACT-CC-
* ** * ** * *
936224 TCAGAACTACGAACAGTAGAGTAGTGTATACGTTATGTGAGACAAATAGTGTAAATAAGAGGAAT
120 -C--AAC-A--AAC-G-A-ATTAG-G-ATA-G-TA--AAAAATTAA--G-G------GGA-AAAT
* *
936289 TTTTA
160 ATTGA
* ** * *
936294 AAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTACCTGAAACAAATAGTGTGAAGATGAT
1 AAAGTAAAACAAGTAGTGTATAC-TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGA-
* * * *
936359 GCGTTCGTAGTACTACA-TTAGGATAATTGCCTTCCAATCAATAGACTCGGGTTCGACTCCCAAC
64 G-G-T-GTAGTACAACAGTTAGGATAATTGCCATCCAA--AATAGACCCGGGTTAGACTCCCAAC
* *
936423 AAACACAATTAGGATAGT-AAAAATTAAGGGAAAAATATTGA
124 AAAC-GAATTAGGATAGTAAAAAATTAAGGGGAAAATATTGA
* *
936464 AAAGTAAAACGAGTAGTGTATACATGTTGTTATTGATTATGTGAAACAAATAGTGT--AGAAGAG
1 AAAGTAAAACAAGTAGTGTATAC-TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAG
* * *
936527 GTGTA-TCCAAC-GATTAGGAT-ATTGCCTTCCAAGAAATAGACCCGGGTTAGACTCCC-CCAAA
65 GTGTAGTACAACAG-TTAGGATAATTGCCATCC-A-AAATAGACCCGGGTTAGACTCCCAACAAA
* * * *
936588 CATAATTATGATAGTAAAAATTTAAGGGG-AAATTTTGA
127 C-GAATTAGGATAGTAAAAAATTAAGGGGAAAATATTGA
** * * * * * *
936626 AAAGTAAATTAAGTA--GTACAGGTTTTGTTCTTGACTATGTGAAACAAATAGCGTAAAGAGGAG
1 AAAGTAAAACAAGTAGTGTATA-CTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAG
** * * * * * * * * *
936689 CTGTTTGTCTTCCGATCA-CTAGGATAATTGCCTTCTAGTCAATAAACCCGGGTTCGA-TAGGCC
65 --G--TGTAGTAC-AACAGTTAGGATAATTGCCATCCA--AAATAGACCCGGGTTAGACT--CCC
* ** * *
936752 AA-AAAGGCAATTTTGATAGTAAAATATTAA-GGGAAAATTTTGA
121 AACAAACG-AATTAGGATAGTAAAAAATTAAGGGGAAAATATTGA
** * * * ** * * *
936795 AAAGTAAAACAAACAGTGTTTACCT-TGGGAAAATT-TTTAAAAT-TAAAACAGACAGTGTTTAC
1 AAAGTAAAACAAGTAGTGTATA-CTGT-TG----TTCTTGATTATGTGAAACAAATAGTG--TA-
***** *** * * * * ** * *
936857 CTTTCGTTCTTGATTACGTGAAACAATACTGTAAAGAATAGGTATTTG-TAGTCCAACGGT-TAT
57 AAGAAG-AGGTG--TA-GT---AC-A-ACAGT-TAGGATA---A-TTGCCA-TCCAA-AATAGAC
* *** * * * * * *
936920 GCTAATTA-CCTTCCAAGCAAATGAATTACGA-ATGTCAAAAATTAAGGGGTAAAT-TTGA
106 CCGGGTTAGACTCCCAA-CAAACGAATTAGGATA-GTAAAAAATTAAGGGGAAAATATTGA
*** * * * * * *
936978 AAAGTAAATTGAGTAATGTATA-TG-TGTTTTTGATTATGTAAAAGAAATAGTGTGAATAGAGGC
1 AAAGTAAAACAAGTAGTGTATACTGTTGTTCTTGATTATGTGAAACAAATAGTGT-AA-AGAAGA
* * * * * * * * **
937041 GCTTGTACTCCAACGGTTAGGATAATTGCCTTCCAAGCATAGACCCGGGTTTCGACTCACGGCAA
64 G-GTGTAGTACAACAGTTAGGATAATTGCCATCCAA-AATAGACCCGGG-TTAGACTCCCAACAA
* ** * * *
937106 ACGCAATGACAATAGT-AAAAAGTAAGGGGAAAATTTTAA
126 ACG-AATTAGGATAGTAAAAAATTAAGGGGAAAATATTGA
* * * *
937145 AAAGTAGAACGAGTAGTGTATATGTGTTGTTCTTGATTGATTATGTGAATCAAATAGTGTAAAGA
1 AAAGTAAAACAAGTAGTGTATA-CTGTTGTTC----TTGATTATGTGAAACAAATAGTGTAAAGA
* * * * * * * *
937210 CGAGGTGTTTGTAGTCCAACGGCTAGGATAATTG-CATTTCAATCAATATACTCGGGTTCGACTC
61 AGA-G-G--TGTAGTACAACAGTTAGGATAATTGCCA-TCCAA--AATAGACCCGGGTTAGACTC
* * * * *
937274 CCAACAAAGGTAATTATGATGGTAAAAAATTAAGGGGAAAATGTTGG
119 CCAACAAACG-AATTAGGATAGTAAAAAATTAAGGGGAAAATATTGA
* * * * * * *
937321 AAAGTGAAACGAGTAGTATA-AGTGTTGTTCTTGTTTATGTGAAAGAAATAGCT-TAAATAAGAG
1 AAAGTAAAACAAGTAGTGTATACTGTTGTTCTTGATTATGTGAAACAAATAG-TGTAAAGAAGA-
* * * * * * * ***
937384 GCGTTTTTAGTACAACAATTAGGATAATTTCCTTCCAAACAAAGACTCGAGTTCA-ACTCCCGGT
64 G-G--TGTAGTACAACAGTTAGGATAATTGCCATCCAAA-ATAGACCCGGGTT-AGACTCCCAAC
* * * * * *
937448 AAACACAATTACGATAGT-AAAATTTAAGGGGGAAATGTTTA
124 AAAC-GAATTAGGATAGTAAAAAATTAAGGGGAAAATATTGA
* * *
937489 AAAGTAAAACAAGTAGTGTATATGTGTTATTCGTT-ATTATGTGAAACAAATAGTGTCAAGAAGA
1 AAAGTAAAACAAGTAGTGTATA-CTGTTGTTC-TTGATTATGTGAAACAAATAGTGTAAAGAAGA
* * * * * * *
937553 GGCGTTTTTAGTCCAAC-GCTTAGGATAATTGCCTTCCAAGCAATAAACTCGGGTTTGACTCCCG
64 -G-G--TGTAGTACAACAG-TTAGGATAATTGCCATCCAA--AATAGACCCGGGTTAGACTCCCA
* * * * * * ** ** * *
937617 AGAAATGAATTACGTTTGTAAGAAATTAAAAGGAATTTTTTTA
122 ACAAACGAATTAGGATAGTAAAAAATTAAGGGGAAAATATTGA
* *** *
937660 AAAGTAAAACGAGTAGTGTATAC-GTGTGTTCTTGATTA-CCAAAAC-AATAGTGTAAAGATGAT
1 AAAGTAAAACAAGTAGTGTATACTGT-TGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGA-
* * * *
937722 GCGTTCGTAGTACTACAGTTAGGATAATTGCC-TTCAATCAATAGACTCGGGTTCGACTCCCAAC
64 G-G-T-GTAGTACAACAGTTAGGATAATTGCCATCCAA--AATAGACCCGGGTTAGACTCCCAAC
* ** * *
937786 -AATGCAATTAATAGTGTATAGATTATAGACAAAATTAA--ATAAGATATTTTTA
124 AAACG-AA-T--TAG-G-ATAG----TA-A-AAAATTAAGGGGAA-A-ATATTGA
* ** * *
937838 AAAGTAAAACGAGTAGTGTATACATGTTGTTC----TTACCTGAAACAAATAGTGTGAAGATGAT
1 AAAGTAAAACAAGTAGTGTATAC-TGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGA-
* *
937899 GGTTCGTAGTACTAACAGTTAGGATAA-TGCCTTCCAATCAATAGA-CCGGGTTCGACTCCCAAC
64 GG-T-GTAGTAC-AACAGTTAGGATAATTGCCATCCAA--AATAGACCCGGGTTAGACTCCCAAC
*
937962 AACAC-AATTAGGATAGT-AAAAATTAAGGGAAAAATATTGA
124 AA-ACGAATTAGGATAGTAAAAAATTAAGGGGAAAATATTGA
* *
938002 AAAGTAAAACGAGTAGTGTATACATGTTGTTATTGATTA
1 AAAGTAAAACAAGTAGTGTATAC-TGTTGTTCTTGATTA
938041 CAGGTTTTGT
Statistics
Matches: 2206, Mismatches: 508, Indels: 517
0.68 0.16 0.16
Matches are distributed among these distances:
160 32 0.01
162 43 0.02
163 51 0.02
164 95 0.04
165 79 0.04
166 80 0.04
167 145 0.07
168 193 0.09
169 166 0.08
170 218 0.10
171 95 0.04
172 201 0.09
173 54 0.02
174 43 0.02
175 78 0.04
176 212 0.10
177 82 0.04
178 67 0.03
179 33 0.01
180 16 0.01
181 2 0.00
182 13 0.01
183 37 0.02
184 20 0.01
185 6 0.00
186 9 0.00
187 4 0.00
188 4 0.00
189 4 0.00
190 1 0.00
191 2 0.00
192 3 0.00
194 1 0.00
196 2 0.00
197 44 0.02
198 70 0.03
199 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (164 bp):
AAAGTAAAACAAGTAGTGTATACTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGG
TGTAGTACAACAGTTAGGATAATTGCCATCCAAAATAGACCCGGGTTAGACTCCCAACAAACGAA
TTAGGATAGTAAAAAATTAAGGGGAAAATATTGA
Found at i:935431 original size:38 final size:37
Alignment explanation
Indices: 935389--935463 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 37
935379 GTAAAAATTA
935389 GGGAAAATTTTGAAAAGTAAAACAACAACGTTTACCTT
1 GGGAAAATTTTGAAAAGTAAAACAAC-ACGTTTACCTT
* *
935427 GGGAAAATTTTGAAAATTAAAACAACATGTTTACCTT
1 GGGAAAATTTTGAAAAGTAAAACAACACGTTTACCTT
935464 TCATGCTTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
37 10 0.29
38 25 0.71
ACGTcount: A:0.44, C:0.12, G:0.15, T:0.29
Consensus pattern (37 bp):
GGGAAAATTTTGAAAAGTAAAACAACACGTTTACCTT
Found at i:936825 original size:39 final size:39
Alignment explanation
Indices: 936782--936859 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
936772 AAAATATTAA
936782 GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTT
1 GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTT
* * *
936821 GGGAAAATTTTTAAAATTAAAACAGACAGTGTTTACCTT
1 GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTT
936860 TCGTTCTTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.31
Consensus pattern (39 bp):
GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTT
Found at i:938252 original size:39 final size:38
Alignment explanation
Indices: 938179--938255 Score: 111
Period size: 38 Copynumber: 2.0 Consensus size: 38
938169 AAAATATTAA
*
938179 GGGAAAATTTTGAAAAGTAAACAAACAGTGTTTACCTT
1 GGGAAAATTTTAAAAAGTAAACAAACAGTGTTTACCTT
*
938217 GGGAAAATTTTAAAAATTAAA-ATAGACAGTGTTTACCTT
1 GGGAAAATTTTAAAAAGTAAACA-A-ACAGTGTTTACCTT
938256 TCGTGCTTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
37 1 0.03
38 20 0.57
39 14 0.40
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.31
Consensus pattern (38 bp):
GGGAAAATTTTAAAAAGTAAACAAACAGTGTTTACCTT
Found at i:939775 original size:39 final size:39
Alignment explanation
Indices: 939731--939808 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
939721 TAAAAAATTA
939731 GGGAAAATTTTGAAAAGTAAAACAAACAACGTTTACCTT
1 GGGAAAATTTTGAAAAGTAAAACAAACAACGTTTACCTT
* **
939770 GGGAAAATTTTGAAAATTAAAACAAACAGTGTTTACCTT
1 GGGAAAATTTTGAAAAGTAAAACAAACAACGTTTACCTT
939809 TCATGCTTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.45, C:0.12, G:0.15, T:0.28
Consensus pattern (39 bp):
GGGAAAATTTTGAAAAGTAAAACAAACAACGTTTACCTT
Found at i:940982 original size:161 final size:166
Alignment explanation
Indices: 940694--941088 Score: 403
Period size: 161 Copynumber: 2.3 Consensus size: 166
940684 AGGTGTTTTT
*
940694 AAAAGTAAAACGAGTAGTGTATACA-TGTTATTCTTGATTACT-TGAAACAAATAGTGTGAAGAT
1 AAAAGTAAAACGAGTAGTGTAT-CATTG-TA---TTGATTA-TGTGAAACAAATAGTGTAAAGA-
* * ** * * *
940757 TATGCGTTCGTAGTACTACAGTTAGGATAATTGCCTTCCAATCAATAGACTCGGGTTCGACTCCC
59 TATGAGTTCGTAGTACAACAGTTAGGATAATTGCCTTCCAAGAAATAGACCCGGGCTAGACTCCC
*
940822 AATAAACACAATTAGGATAGTAAAAAATTAA-GGAAAATATTG
124 AACAAACACAATTAGGATAGTAAAAAATTAAGGGAAAATATTG
940864 AAAAGTAAAACGAGTAGTGTATCATTGTATTGATTATGTGAAACAAATAGTGTAAAGA-A-GAG-
1 AAAAGTAAAACGAGTAGTGTATCATTGTATTGATTATGTGAAACAAATAGTGTAAAGATATGAGT
* *
940926 T-GTAGTCCAAC-GATTAGGATAATTGCCTTCCAAGAAATAGACCCGGGCTAGACTCCCCACAAA
66 TCGTAGTACAACAG-TTAGGATAATTGCCTTCCAAGAAATAGACCCGGGCTAGACTCCCAACAAA
** * * *
940989 CGTAATTATGATAGTAAAAATTTAAGGGGAAAATTTTG
130 CACAATTAGGATAGTAAAAAATTAA-GGGAAAATATTG
*** * * *
941027 AAAAGTAAATTAAGTAGTGTA-CAAGTTTTTTTCTTGATTATGTGAAACAAATAGCGTAAAGA
1 AAAAGTAAAACGAGTAGTGTATC-A----TTGTATTGATTATGTGAAACAAATAGTGTAAAGA
941089 GGTGGTGTTT
Statistics
Matches: 193, Mismatches: 22, Indels: 23
0.81 0.09 0.10
Matches are distributed among these distances:
160 1 0.01
161 72 0.37
162 2 0.01
163 31 0.16
164 1 0.01
165 1 0.01
166 26 0.13
167 31 0.16
169 4 0.02
170 24 0.12
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (166 bp):
AAAAGTAAAACGAGTAGTGTATCATTGTATTGATTATGTGAAACAAATAGTGTAAAGATATGAGT
TCGTAGTACAACAGTTAGGATAATTGCCTTCCAAGAAATAGACCCGGGCTAGACTCCCAACAAAC
ACAATTAGGATAGTAAAAAATTAAGGGAAAATATTG
Found at i:941225 original size:38 final size:39
Alignment explanation
Indices: 941183--941259 Score: 120
Period size: 39 Copynumber: 2.0 Consensus size: 39
941173 TAAAAATTAA
941183 GGGAAAATTTT-AAAAGTAAAACAAACAGTGTTTACCTT
1 GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTT
* * *
941221 GGGAAAATTTTGAAAATTAAAACAGACATTGTTTACCTT
1 GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTT
941260 TTGTTCTTGA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
38 11 0.31
39 24 0.69
ACGTcount: A:0.43, C:0.10, G:0.16, T:0.31
Consensus pattern (39 bp):
GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTT
Found at i:942746 original size:39 final size:39
Alignment explanation
Indices: 942702--942779 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
942692 AAAATATTAA
*
942702 GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTTCCTT
1 GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTT
*
942741 GGGAAAATTTTGAAAATTAAAACAAACAGTGTTTACCTT
1 GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTT
942780 TCGTGCTTGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.31
Consensus pattern (39 bp):
GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCTT
Found at i:943228 original size:176 final size:173
Alignment explanation
Indices: 942874--944863 Score: 1238
Period size: 176 Copynumber: 11.5 Consensus size: 173
942864 AATTACGAAT
* * ** * * *
942874 GTAAAACATTAAGGGGTAAATTTTGAAAAGTAAATTGAGTAGGGTATACCT-TT-TTTTCTTGAT
1 GTAAAAAATTAAGGGGAAAATTTT-AAAAGTAAAACGAGTAGTGTATACGTGTTGTTTTATTGAT
* * * * * * * *
942937 TATGTAAAAGAAATAGTATGAATAAGAGGCGTTTGTAGTCCAATGTTTAGGATAATTGCTTTCCA
65 TATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCA
* * * *
943002 AGCAATAGACCCGGGTTCGATTCCCGACAAACGCAATGACA-ATA
130 AGCAATAGACTCGGGTTCGACTCCCTACAAACGCAATTA-AGATA
* * *
943046 GTAAAAAATTAAGGGTAAAATTTTAAAAAGTAGAACGAGAAGTGTATACGTGTTGTTATTGATTG
1 GTAAAAAATTAAGGGGAAAATTTT-AAAAGTAAAACGAGTAGTGTATACGTGTTGTT-TT-ATTG
** * * * * *
943111 ATTATGTGAAACAAGCAATGTAAAGACGAGGTGTTTGTAGTCCAACGGTTAGGATAATTACTTTC
63 ATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTC
* * * *
943176 CAATCAAT-GTACTCGGGTTCGACTCCCTAGAAAGGCAATTAAGATT
128 CAAGCAATAG-ACTCGGGTTCGACTCCCTACAAACGCAATTAAGATA
** * * *
943222 GTAAAAAATTAAGGGGAAAATGTTGGAAAGTGAAACGAGTAGTGTATACGTGTTG--TTCTTGTT
1 GTAAAAAATTAAGGGGAAAAT-TTTAAAAGTAAAACGAGTAGTGTATACGTGTTGTTTTATTGAT
* * * * ** *
943285 TATGTGAAAGAAATAGCT-TAAATAAGAGGCGTTTTTAGTACAACAATTAGGATAATTTCCTTCC
65 TATGTGAAACAAATAG-TGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCC
* * * * *** * *
943349 AAACAAAAGACTCGAGTTCAACTCCCGGTAAACACAATTACGATA
129 AAGCAATAGACTCGGGTTCGACTCCCTACAAACGCAATTAAGATA
* * * * *
943394 GTTAGTAAAAATTTAAGGGGGAAATGTTTAAAAGTAAAACAAGTAGTATATACGTGTT-ATTCAT
1 G-TA--AAAAA-TTAAGGGGAAAAT-TTTAAAAGTAAAACGAGTAGTGTATACGTGTTGTTTTAT
* * **
943458 T-ATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTTTAGGCCAACACTTAGGATAATTGCCT
61 TGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCT
* * * * * * * *
943522 TCCAAGCAATAGACCCGAGTTTGACTCCCGT-TAAATG-AACTACGTTA
126 TCCAAGCAATAGACTCGGGTTCGACTCCC-TACAAACGCAATTAAGATA
* ** * * * * * *
943569 GTAAGAAATTAAAAGGAAATTTTTTAAAAGTAAAACGAGTAGTGTATACCTATTTTTTTTTTAAT
1 GTAAAAAATTAAGGGGAAA-ATTTTAAAAGTAAAACGAGTAGTGTATACGTGTTGTTTTATTGAT
* * *
943634 TATGTGAAACAAATAGTGTAAATAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTACCTTCGA
65 TATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCA
* * * * * ** * **** *
943699 AGCGATAGACCCGGGTTTGACACACGGCAAACACAATCGCTATC
130 AGCAATAGACTCGGGTTCGACTCCCTACAAACGCAATTAAGATA
* * * *
943743 GTTAAAAATTAAGGGGAGAATTTTAAAAAGTAAAACGAGTAGTGTATACATGTTG--TTCTTGAT
1 GTAAAAAATTAAGGGGAAAATTTT-AAAAGTAAAACGAGTAGTGTATACGTGTTGTTTTATTGAT
** * * ** * * * *
943806 TACCTGAAACAAATAGTGTGAAA-ATGATGCGTTCCTAGTACTACAGTTAGTATAATTGCCTTCC
65 TATGTGAAACAAATAGTGT-AAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCC
* * *
943870 AATCAATAGACTCGGGTTCGACTCCCAACAAACGCAATTAGGATA
129 AAGCAATAGACTCGGGTTCGACTCCCTACAAACGCAATTAAGATA
* * *
943915 GTAAAACATTAAGGGGAAAATATTGAAAGTAAAACGAGTAGTGTATACGTGTTG--TTATTGATT
1 GTAAAAAATTAAGGGGAAAATTTTAAAAGTAAAACGAGTAGTGTATACGTGTTGTTTTATTGATT
* *
943978 ATGTGAAACAAATAGTGTAAAGAAGA-G-G--TGTAGTCCAACGATTAGGATAATTGCCTTCTAA
66 ATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAA
* * * *
944039 GAAATAGACTCGGGTTAGACTCCCTACAAACGTAATTATGATA
131 GCAATAGACTCGGGTTCGACTCCCTACAAACGCAATTAAGATA
* *** * * *
944082 GTAAAAATTTAAGGGGAAAATTTTGAAAAGTAAATTAAGTAGTGTACA-GT-TTGTGTTCTTGAT
1 GTAAAAAATTAAGGGGAAAATTTT-AAAAGTAAAACGAGTAGTGTATACGTGTTGTTTTATTGAT
* * ** * * * * *
944145 TATGTGAAACAAATAGCGTAAAGAGGAGGTATTTGT-CTTCAATCCGCTAGGAAAATTGCCTT-C
65 TATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAA-CGGTTAGGATAATTGCCTTCC
* * *** * * **
944208 TAGTCAATAAACTCGGGTTCGA-TAGGTGAAAAAGGCAATTTCGATA
129 AAG-CAATAGACTCGGGTTCGACTCCCT-ACAAACGCAATTAAGATA
* ** * * * **
944254 GTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCATG-GGAAAATT-TT
1 GTAAAAAATTAAGGGGAAAATTTT-AAAAGTAAAACGAGTAGTGTATA-CGTGTTG--TTTTATT
* * * ** ****** * * ** ***
944316 GA-AACT-TAAAACAAACAGTGTTTACCTTTCGTGCTTGATTACGTGAAACAAATAGCGTAAATA
62 GATTA-TGTGAAACAAATAGTGTAAAGAAGAGGCGTTTG--TA-GTCCAACGGTTAG-G---ATA
* ** *** * * * * * * * * * *
944379 ATAGGTATTTGTAGTC-CTACAGTTAGGCTAAT-TACCTTCCAAGCAAATG-AATTACGA-A
119 AT-TGCCTTCCAAG-CAATAGA-CTCGGGT--TCGA-CTCCCTA-CAAACGCAATTAAGATA
* * ** *
944437 TGTAAAAAATTAACGGGTAAATTTTGAAAAGTAAATTGAGTAGTGTATACGTGTTG--TTCTTGA
1 -GTAAAAAATTAAGGGGAAAATTTT-AAAAGTAAAACGAGTAGTGTATACGTGTTGTTTTATTGA
* * * *
944500 TTATGT-AAAGAAATGGTGTGAATAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCC
64 TTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCC
* * * *
944564 AAGCAATAGACCCGGGTTCTACTCCCGGA-AAACGCAATGACA-ATA
129 AAGCAATAGACTCGGGTTCGACTCCC-TACAAACGCAATTA-AGATA
*
944609 GTAAAAAATTAAGGGGAAAATTTTAAAAAGTAGAACGAGTAGTGTATACGTGTTGTTCTTGATTG
1 GTAAAAAATTAAGGGGAAAATTTT-AAAAGTAAAACGAGTAGTGTATACGTGTTGTT-TT-ATTG
* * * *
944674 ATTATGTGAAACAAATAGTGTAAAGACGAGGTGTTTGTAGTCAAACGGTTAGGATAATTGCATTC
63 ATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTC
* * * * * * * * * *
944739 TAATCAATATACTCGAGTTTGACTCCCAACAAAGGCAATTACGTTG
128 CAAGCAATAGACTCGGGTTCGACTCCCTACAAACGCAATTAAGATA
** * * *
944785 GTAAAAAATTAAGGGGAAAATGTTGGAAAGTGAAACGAGTAGTGTAT--GTG-TGTTGTTCTTGT
1 GTAAAAAATTAAGGGGAAAAT-TTTAAAAGTAAAACGAGTAGTGTATACGTGTTGTT-TTATTGA
*
944847 TTATGTGAAATAAATAG
64 TTATGTGAAACAAATAG
944864 CTTTATATAA
Statistics
Matches: 1397, Mismatches: 344, Indels: 154
0.74 0.18 0.08
Matches are distributed among these distances:
166 3 0.00
167 85 0.06
168 50 0.04
169 2 0.00
170 8 0.01
171 187 0.13
172 321 0.23
173 130 0.09
174 67 0.05
175 38 0.03
176 380 0.27
177 11 0.01
178 1 0.00
179 8 0.01
180 6 0.00
181 8 0.01
182 30 0.02
183 4 0.00
184 24 0.02
185 34 0.02
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (173 bp):
GTAAAAAATTAAGGGGAAAATTTTAAAAGTAAAACGAGTAGTGTATACGTGTTGTTTTATTGATT
ATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAA
GCAATAGACTCGGGTTCGACTCCCTACAAACGCAATTAAGATA
Found at i:943513 original size:348 final size:344
Alignment explanation
Indices: 941372--944288 Score: 1503
Period size: 343 Copynumber: 8.5 Consensus size: 344
941362 GGGTAAATTG
* * * * * *
941372 AGTAGTGTATACGTGTTGTTCTTGATTATGTAAAAGAAATAGTGTGAATAAGAGGCGTTTGTAGT
1 AGTAGTGTATACGTGTTATTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTCTAGT
* * * *
941437 CCAACGGTTAGGATAATTGCCTTCCAAGCAATAGAC-CTAGGTTCGACTCCC-AGAAAACGCAAT
66 CCAACAGTTAGGATAATTGCCTTCCAATCAATAGACTC-GGGTTCGACTCCCTA-CAAACGCAAT
* * * * * * * *
941500 GACAATAGTACAATATTAAGGGGAAAATTTTAAAAAGTAGAACGAGTAGTGTATACGTTGTTCGT
129 TACGATTGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATAC-CTGTT-GT
** * * * *
941565 GATTGATTATGT-TAACAAATAGTGT--A-AAGA--CG--AG--GT-GAACGGTTAGGATAATTG
192 TCTTGATTATGTGAAACAAATAGTGTAAATAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTG
* * * * ** ** *
941619 CCTTCCAATCAATATACTCGAGTTTGACTCCTAACAAA-AGCAATT-ATGATGGT-AAAATATTA
257 CCTTCCAAACAATAGACCCGGGTTCAACTCCCGACAAACA-CAATTCAT-ATAGTAAAAAT-TTA
* ** * * *
941681 AGGGGAAAATGTTGGAAAGTGAATCG
319 AGGGGAAAATTTTAAAAAGTAAAACA
* * * * * *
941707 AGTAGTGTATACATGTTGTTCTTGTTTATGTGAAAGAAATAGCT-TAAATAAGAGGCGTTTTTAG
1 AGTAGTGTATACGTGTTATTCTTGATTATGTGAAACAAATAG-TGTAAAGAAGAGGCGTTTCTAG
* * * * * * * * * *
941771 TACAATAATTAGGATAATTTCCTTCCAAACAAAAGACTCGAGTTCAACTCCCGT-TAAACACAAT
65 TCCAACAGTTAGGATAATTGCCTTCCAATCAATAGACTCGGGTTCGACTCCC-TACAAACGCAAT
* * * * * *
941835 TACGATAGTAAAAATTTAAGGGGGAAATGTTT-AAAAGTAAAACAAGTAGTGTATACGTGTTATT
129 TACGATTGTAAAAAATTAAGGGGAAAAT-TTTGAAAAGTAAAACGAGTAGTGTATACCTGTTGTT
* * *
941899 AGTT-ATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCCAACGCTTAGGATAATTG
193 -CTTGATTATGTGAAACAAATAGTGTAAATAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTG
* * ** * * * * *
941963 CCTTCCAAGCAATAGACTCGGGTTTGACTCCCGTCAAATGA-ACTACGT-TAGTAAGAAA-TTAC
257 CCTTCCAAACAATAGACCCGGGTTCAACTCCCGACAAA-CACAATTCATATAGTAA-AAATTTA-
* * * **
942025 A-AGGAAATTTTTTAAAAGTAAAATG
319 AGGGGAAAATTTTAAAAAGTAAAACA
* * * * * *
942050 AGTAGCGTATACGTGTTTTTATTCATTATGTGAAACAAATAGTGTAAATAAGAGGCGTTTGTAGT
1 AGTAGTGTATACGTGTTATTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTCTAGT
* * * *** * * * * * ** *
942115 CCAACGGTTATGATAATTGCCTTCAAAGGGATA-AATCCAGGTTTGAC-ACATGGGAAACACAA-
66 CCAACAGTTAGGATAATTGCCTTCCAATCAATAGACT-CGGGTTCGACTCCCT-ACAAACGCAAT
* * * * * * * *
942177 T-CGCTGTCGTTAAAAATTAAGGGGAGAATTTTAAAAAGTTAAACCAGTAGTGTATACATATTGT
129 TACGAT-T-GTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACCTGTTGT
** * * * * * * ***
942241 TCTTGATTACCTGAAACAAATAATGTGAAGATGATGCGTTCGTAGTAGTAC-AGTTAGGATAATT
192 TCTTGATTATGTGAAACAAATAGTGTAAATAAGAGGCGTTTGTAGTCCAACGA-TTAGGATAATT
* * * * * * * *
942305 GCCTTACAATCAATAGACTCGGGTTCGACTCCCAATAAACGCAATT-ACGATAGTAAACAA-TTA
256 GCCTTCCAAACAATAGACCCGGGTTCAACTCCCGACAAACACAATTCA-TATAGTAAA-AATTTA
* * * *
942368 AGGGGGAAATATTGAAAAGTAAAACG
319 AGGGGAAAATTTTAAAAAGTAAAACA
* * * *
942394 AGTAGTGTATACCTGTTGTTATTGATTATGTGAAACAAATAGTGTAAAGAAGA-G-G--TGTAGT
1 AGTAGTGTATACGTGTTATTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTCTAGT
** * * * *
942455 CCAAC-GATT-GGATAATTGCCTTCCAAGAAATAGAC-C-CGTTAGACTCCCTACAAATGTAATT
66 CCAACAG-TTAGGATAATTGCCTTCCAATCAATAGACTCGGGTTCGACTCCCTACAAACGCAATT
* * * *** * ** *
942516 ATGATAGTAAAAATTTAAGGGG-AAATTTTGAAAAGTAAATTAAGTAGTGTACAGGTTTTGTTCT
130 ACGATTGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACCTGTTGTTCT
* ** * * ** * *
942580 TGGTTATGTGAAACAAA-AACGT-AA-GAGAGGTGTTTGTCTTCCAACCG-CTCGGATAATTGCC
195 TGATTATGTGAAACAAATAGTGTAAATAAGAGGCGTTTGTAGTCCAA-CGATTAGGATAATTGCC
* ** * * * *** * * *
942641 TTCTAGTCAATAAACTCGGGTTCGA-TAGGTGAAAAAGGA-AATTTC-GATAGT-AAAATATTAA
259 TTCCAAACAATAGACCCGGGTTCAACT-CCCGACAAA-CACAA-TTCATATAGTAAAAAT-TTAA
*
942702 -GGGAAAATTTTGAAAAGTAAAACA
320 GGGGAAAATTTTAAAAAGTAAAACA
** * * * ** ** * * * ******
942726 AACAGTGTTTTCCTTGGGAAAATT-TTGAAAAT-TAAAACAAACAGTGTTTACCTTTCGTGCTTG
1 AGTAGTG-TATAC--GTG-TTATTCTTGATTATGTGAAACAAATAGTG-TAAAGAAGAG-GC--G
* ** * * * * *** * * * **
942789 ATTACATGAAACAAATATTGTAAAGAATAGGTATTTGTAGTCTAA-CAGTTAGGCT--AATT--A
58 -TTTC-T-AGTCCAACA--GT-TAGGATA---A-TTGCCTTCCAATCA-ATAGACTCGGGTTCGA
*** * * * * **
942849 CCTTCAAAACAAATG-AATTACGAATGTAAAACATTAAGGGGTAAATTTTGAAAAGTAAATTGAG
112 -C-TCCCTACAAACGCAATTACGATTGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAG
* * * * * * *
942913 TAGGGTATACCTTTTTTTCTTGATTATGTAAAAGAAATAGTATGAATAAGAGGCGTTTGTAGTCC
175 TAGTGTATACCTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAATAAGAGGCGTTTGTAGTCC
* * * * * * * *
942978 AATGTTTAGGATAATTGCTTTCCAAGCAATAGACCCGGGTTCGATTCCCGACAAACGCAATGACA
240 AACGATTAGGATAATTGCCTTCCAAACAATAGACCCGGGTTCAACTCCCGACAAACACAAT-TCA
* * * *
943043 -ATAGTAAAAAATTAAGGGTAAAATTTTAAAAAGTAGAACG
304 TATAGTAAAAATTTAAGGGGAAAATTTTAAAAAGTAAAACA
* * ** * * * *
943083 AGAAGTGTATACGTGTTGTTATTGATTGATTATGTGAAACAAGCAATGTAAAGACGAGGTGTTTG
1 AGTAGTGTATAC--G-TGTTATT-CTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTC
* * * * *
943148 TAGTCCAACGGTTAGGATAATTACTTTCCAATCAAT-GTACTCGGGTTCGACTCCCTAGAAAGGC
62 TAGTCCAACAGTTAGGATAATTGCCTTCCAATCAATAG-ACTCGGGTTCGACTCCCTACAAACGC
* * * * *
943212 AATTAAGATTGTAAAAAATTAAGGGGAAAATGTTGGAAAGTGAAACGAGTAGTGTATACGTGTTG
126 AATTACGATTGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACCTGTTG
* * * * *
943277 TTCTTGTTTATGTGAAAGAAATAGCT-TAAATAAGAGGCGTTTTTAGTACAACAATTAGGATAAT
191 TTCTTGATTATGTGAAACAAATAG-TGTAAATAAGAGGCGTTTGTAGTCCAACGATTAGGATAAT
* * * * **
943341 TTCCTTCCAAACAAAAGACTCGAGTTCAACTCCCGGTAAACACAATTACGATAGTTAGTAAAAAT
255 TGCCTTCCAAACAATAGACCCGGGTTCAACTCCCGACAAACACAATT-C-ATA--TAGTAAAAAT
*
943406 TTAAGGGGGAAATGTTT-AAAAGTAAAACA
316 TTAAGGGGAAAAT-TTTAAAAAGTAAAACA
* *
943435 AGTAGTATATACGTGTTATTCATT-ATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTTTAG
1 AGTAGTGTATACGTGTTATTC-TTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTCTAG
* * * * * * * * *
943499 GCCAACACTTAGGATAATTGCCTTCCAAGCAATAGACCCGAGTTTGACTCCCGT-TAAATG-AAC
65 TCCAACAGTTAGGATAATTGCCTTCCAATCAATAGACTCGGGTTCGACTCCC-TACAAACGCAAT
* ** * * * *
943562 TACG-TTAGTAAGAAATTAAAAGGAAATTTTTTAAAAGTAAAACGAGTAGTGTATACCTATTTTT
129 TACGATT-GTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACC--TGTTG
* * *
943626 TTTTTAATTATGTGAAACAAATAGTGTAAATAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATT
191 TTCTTGATTATGTGAAACAAATAGTGTAAATAAGAGGCGTTTGTAGTCCAACGATTAGGATAATT
* * * * ** * * * * *
943691 ACCTTCGAAGCGATAGACCCGGGTTTGACACACGGCAAACACAA-TCGCTATCGTTAAAAA-TTA
256 GCCTTCCAAACAATAGACCCGGGTTCAACTCCCGACAAACACAATTC-ATATAG-TAAAAATTTA
* *
943754 AGGGGAGAATTTTAAAAAGTAAAACG
319 AGGGGAAAATTTTAAAAAGTAAAACA
* * ** * * *
943780 AGTAGTGTATACATGTTGTTCTTGATTACCTGAAACAAATAGTGTGAAA-ATGATGCGTTCCTAG
1 AGTAGTGTATACGTGTTATTCTTGATTATGTGAAACAAATAGTGT-AAAGAAGAGGCGTTTCTAG
* * * *
943844 TACTACAGTTAGTATAATTGCCTTCCAATCAATAGACTCGGGTTCGACTCCCAACAAACGCAATT
65 TCCAACAGTTAGGATAATTGCCTTCCAATCAATAGACTCGGGTTCGACTCCCTACAAACGCAATT
* * * * * *
943909 AGGATAGTAAAACATTAAGGGGAAAATATTG-AAAGTAAAACGAGTAGTGTATACGTGTTGTTAT
130 ACGATTGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACCTGTTGTTCT
*
943973 TGATTATGTGAAACAAATAGTGTAAAGAAGA-G-G--TGTAGTCCAACGATTAGGATAATTGCCT
195 TGATTATGTGAAACAAATAGTGTAAATAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCCT
* * * **
944034 TCTAAGA-AATAGACTCGGGTT-AGACTCCCTACAAACGTAATT-ATGATAGTAAAAATTTAAGG
260 TCCAA-ACAATAGACCCGGGTTCA-ACTCCCGACAAACACAATTCAT-ATAGTAAAAATTTAAGG
* **
944096 GGAAAATTTTGAAAAGTAAATTA
322 GGAAAATTTTAAAAAGTAAAACA
* * * * * ** * *
944119 AGTAGTGTACA-GTTTGTGTTCTTGATTATGTGAAACAAATAGCGTAAAGAGGAGGTATTTGT-C
1 AGTAGTGTATACGTGT-TATTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTCTAG
* * * * * * * *** * *
944182 TTCAATCCGCTAGGAAAATTGCCTTCTAGTCAATAAACTCGGGTTCGA-TAGGTGAAAAAGGCAA
65 TCCAA-CAGTTAGGATAATTGCCTTCCAATCAATAGACTCGGGTTCGACTCCCT-ACAAACGCAA
* *
944246 TTTCGATAGTAAAAAATTAA-GGGAAAATTTTGAAAAGTAAAAC
128 TTACGATTGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAAC
944289 AAACAGTGTT
Statistics
Matches: 1957, Mismatches: 494, Indels: 258
0.72 0.18 0.10
Matches are distributed among these distances:
331 2 0.00
332 29 0.01
333 70 0.04
334 35 0.02
335 162 0.08
336 54 0.03
337 30 0.02
338 31 0.02
339 217 0.11
340 16 0.01
341 6 0.00
342 12 0.01
343 279 0.14
344 136 0.07
345 159 0.08
346 38 0.02
347 61 0.03
348 225 0.11
349 113 0.06
350 4 0.00
351 1 0.00
352 68 0.03
353 76 0.04
354 4 0.00
355 5 0.00
356 72 0.04
357 32 0.02
358 9 0.00
359 11 0.01
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (344 bp):
AGTAGTGTATACGTGTTATTCTTGATTATGTGAAACAAATAGTGTAAAGAAGAGGCGTTTCTAGT
CCAACAGTTAGGATAATTGCCTTCCAATCAATAGACTCGGGTTCGACTCCCTACAAACGCAATTA
CGATTGTAAAAAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACCTGTTGTTCTT
GATTATGTGAAACAAATAGTGTAAATAAGAGGCGTTTGTAGTCCAACGATTAGGATAATTGCCTT
CCAAACAATAGACCCGGGTTCAACTCCCGACAAACACAATTCATATAGTAAAAATTTAAGGGGAA
AATTTTAAAAAGTAAAACA
Found at i:944310 original size:39 final size:39
Alignment explanation
Indices: 944266--944341 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
944256 AAAAAATTAA
944266 GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCAT
1 GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCAT
**
944305 GGGAAAATTTTGAAACTTAAAACAAACAGTGTTTACC
1 GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACC
944342 TTTCGTGCTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.45, C:0.12, G:0.17, T:0.26
Consensus pattern (39 bp):
GGGAAAATTTTGAAAAGTAAAACAAACAGTGTTTACCAT
Found at i:945283 original size:172 final size:168
Alignment explanation
Indices: 944973--945519 Score: 524
Period size: 172 Copynumber: 3.2 Consensus size: 168
944963 TAAAACAAGT
944973 AGTGTATACGTGTTATTCGTT-ATTATGTGAAACAAATAGTGTGAAGAAGAGGCGTTTGTAGTCC
1 AGTGTATACGTGTTATTC-TTGATTATGTGAAACAAATAGTGTGAAGAAGA-GCG-TTGTAGTCC
* * * * ** * *
945037 AACGCA-TAGGATAATTGCCTTCCAAGCAATAGACCCGAGTTTGACACCCGGCAAACACAA-TCG
63 AACG-ATTAGGATAATTGCCTTCCAATCAATAGACTCG-GGTTGACTCCCAACAAACGCAATTAG
* * * *
945100 CTATCGTAAAAAGTTAAGGGGAGAATTTTAAAATGTAAAACGAAC
126 -GATAGTAAAAAATTAAGGGGAAAATTTTAAAA-GTAAAACGAAC
* * ** * * * *
945145 AGTGTATACATGTTAATCTTGATTACCTGAAACAAATAGTGTGAAGATGATGCGTTCGTATTACT
1 AGTGTATACGTGTTATTCTTGATTATGTGAAACAAATAGTGTGAAGAAGA-GCGTT-GTAGTCCA
*
945210 AC-AGTTAGGATAATTGCCTTCCAATCAATAGACTCGGGTTCGACTCCCAACAAATGCAATTAGG
64 ACGA-TTAGGATAATTGCCTTCCAATCAATAGACTCGGGTT-GACTCCCAACAAACGCAATTAGG
* **
945274 ATAGTAAAAAAATTAAGGGGAAAATATTGAAAAGTAAAACGAGT
127 ATAGT-AAAAAATTAAGGGGAAAAT-TTTAAAAGTAAAACGAAC
* * *
945318 AGTGTATACGTGTTGTTATTGATTATGTGAAACAAATAGTGTAAAGAAGAG-G-TGTAGTCCAAC
1 AGTGTATACGTGTTATTCTTGATTATGTGAAACAAATAGTGTGAAGAAGAGCGTTGTAGTCCAAC
* * * *
945381 GATTAGGATAATTGCCTT-C--TAAATAGACTCGGGTT-ACTCCCTACAAACGTAATTATGATAG
66 GATTAGGATAATTGCCTTCCAATCAATAGACTCGGGTTGACTCCCAACAAACGCAATTAGGATAG
* ** *
945442 TAAAAATTTAAGGGGAAAATTTTGAAAAGT-AAATTAAGT
131 TAAAAAATTAAGGGGAAAATTTT-AAAAGTAAAACGAA-C
* * *
945481 AGTGTACA-GTTTGTGTTCTTGATTATGTGAAACAAATAG
1 AGTGTATACGTGT-TATTCTTGATTATGTGAAACAAATAG
945520 CGTAAAGAGG
Statistics
Matches: 314, Mismatches: 49, Indels: 33
0.79 0.12 0.08
Matches are distributed among these distances:
162 9 0.03
163 57 0.18
164 23 0.07
166 15 0.05
168 1 0.00
169 23 0.07
170 3 0.01
171 8 0.03
172 99 0.32
173 70 0.22
174 6 0.02
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (168 bp):
AGTGTATACGTGTTATTCTTGATTATGTGAAACAAATAGTGTGAAGAAGAGCGTTGTAGTCCAAC
GATTAGGATAATTGCCTTCCAATCAATAGACTCGGGTTGACTCCCAACAAACGCAATTAGGATAG
TAAAAAATTAAGGGGAAAATTTTAAAAGTAAAACGAAC
Found at i:946122 original size:175 final size:174
Alignment explanation
Indices: 945757--946165 Score: 492
Period size: 175 Copynumber: 2.4 Consensus size: 174
945747 AATTACGAAT
* * * **
945757 GTAAAAAATTAACGGGTAAATTTTGAAAAGTATATTGAGTAGTGTATATGTGTTGTTC---TTGA
1 GTAAAAAATTAAGGGGAAAATTTTGAAAAGTAGAACGAGTAGTGTATATGTGTTGTTCTTGTTGA
* * * *
945819 TTATGTAAAGAAATAGTGTGAATAAGAGGCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCA
66 TTATGTAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCAAACGGTTAGGATAATTGCCTTCCA
*
945884 AGTAATAGACCCGGGTTCTACTCCCGGAAAACGCAATGACAATA
131 AGTAATAGACCCGGGTTCTACTCCCGAAAAACGCAATGACAATA
* *
945928 GTAAAAAATTAAGGGGAAAATTTTAAAAAGTAGAACGAGTAGTGTATACGTGTTGTTCTTGATTG
1 GTAAAAAATTAAGGGGAAAATTTTGAAAAGTAGAACGAGTAGTGTATATGTGTTGTTCTTG-TTG
* *
945993 ATTATGTGAAACAAATAGTGTAAAGACGAGGTGTTTGTAGTCAAACGGTTAGGATAATT-CCTTC
65 ATTATGT-AAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCAAACGGTTAGGATAATTGCCTTC
* * * * ** *
946057 CAA-TCAATATACTCGGGTT-TGACTCCC-AACAAAGGCAATTACGTTG
129 CAAGT-AATAGACCCGGGTTCT-ACTCCCGAA-AAACGCAATGACAATA
* * *
946103 GTAAAAAATTAAGGGGAAAATGTTGGAAAGT-GAAACGAGTAGTGTATGTGTGTTGTTCTTGTT
1 GTAAAAAATTAAGGGGAAAATTTTGAAAAGTAG-AACGAGTAGTGTATATGTGTTGTTCTTGTT
946166 TATGTGAAAG
Statistics
Matches: 203, Mismatches: 26, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
171 51 0.25
174 6 0.03
175 101 0.50
176 45 0.22
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.31
Consensus pattern (174 bp):
GTAAAAAATTAAGGGGAAAATTTTGAAAAGTAGAACGAGTAGTGTATATGTGTTGTTCTTGTTGA
TTATGTAAACAAATAGTGTAAAGAAGAGGCGTTTGTAGTCAAACGGTTAGGATAATTGCCTTCCA
AGTAATAGACCCGGGTTCTACTCCCGAAAAACGCAATGACAATA
Found at i:946600 original size:172 final size:170
Alignment explanation
Indices: 946278--947733 Score: 984
Period size: 172 Copynumber: 8.6 Consensus size: 170
946268 TAAAACAAAC
*
946278 AGTAAAAC-AAGTAGTGTATACGTGTTAG-TCATT-ATTATGTGAAACAAATAGTGTGAAGAAT-
1 AGTAAAACGAA-TAGTGTATACGTGTT-GTTC-TTGATTATGTGAAACAAATAGTGTAAAG-ATG
* * * * *
946339 AGGCGTTTGTAGTCCAATGCA--TAGGATAATTGCCTTCCAAGCAATAGACCCAAGTTTGACACC
62 AGGCG-TTGTAGTCCAA--CAGTTAGGATAATTGCCTTCCAATCAATAGACTC-GGTTCGACTCC
* * ** * * * *
946402 CGACAAACACAATCGCTATCGTAAAAAATTAAGGGGAGAAT-TTTAAA
123 CAACAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATATTGAAA
* * * ** ** * *
946449 ATGTAAAATGAACAGTGTATACATGTTAATCTTGATTACCTGAAACAAATAGTGTGAAGATGATG
1 A-GTAAAACGAATAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGATGAGG
* * *
946514 CGTTCGTATTACTACAGTTAGGATAATTGCCTTCCAATCAATAGACTCGGGTTCGACTCCCAACA
65 CGTT-GTAGTCCAACAGTTAGGATAATTGCCTTCCAATCAATAGACTC-GGTTCGACTCCCAACA
* *
946579 AATGCAATTAGGATAGTAAAAAATTAAGGGGAAAATATTGAAA
128 AACGCAATTACGATAGTAAAAAATTAAGGGGAAAATATTGAAA
* * *
946622 AGTAAAACGAGTAGTGTATACGTGTTGTTATTGATTATGTGAAACAAATAGTGTAAAGAAGA-G-
1 AGTAAAACGAATAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGATGAGGC
** * *
946685 G-TGTAGTCCAAC-GATTAGGATAATAATTGCCTTCCAAGAAATAGACCTCGGTTAGACTCCCTA
66 GTTGTAGTCCAACAG-TTAGG---ATAATTGCCTTCCAATCAATAGA-CTCGGTTCGACTCCCAA
* * * * *
946748 CAAACGTAATTATGATAGTAAAAATTTAAGGGGAAAATTTTGAAC
126 CAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATATTGAAA
** * * * * *
946793 AGT-AAATTAAGTAGTGTACATGTTTTGTTCTTGATTATGTGAAACAAATAGCGTAAAGAGGAGG
1 AGTAAAACGAA-TAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGATGAGG
* ** * * *
946857 TGTTGTCTTCCAACCA-CTAGGATATTTGCCTTCCAGGT-AAT--A----G--CG------AA-A
65 CGTTGTAGTCCAA-CAGTTAGGATAATTGCCTTCCA-ATCAATAGACTCGGTTCGACTCCCAACA
* * * *
946905 AAGGTAATT-CTGATAGTAAAAAATTAAGGGG-AAATTTTTAAA
128 AACGCAATTAC-GATAGTAAAAAATTAAGGGGAAAATATTGAAA
* * * * * *
946947 AGTAAAACAAACAGTGTTTACCT-TTCGTGCTTGATTATGTGAAACAAATAGTGTAAAGACGAGG
1 AGTAAAACGAATAGTGTATACGTGTT-GTTCTTGATTATGTGAAACAAATAGTGTAAAGATGAGG
* * * * *
947011 CATTTGTAGTCGAACGGTTAGGATAATTGCCTTCCAATAAATATACTCGGGTTCGACTCCCAACA
65 C-GTTGTAGTCCAACAGTTAGGATAATTGCCTTCCAATCAATAGACTC-GGTTCGACTCCCAACA
* * * * *
947076 AAGGCAATTACGATGGTAAAAAATTAAAGGGAAAATGTTGGAA
128 AACGCAATTACGATAGTAAAAAATTAAGGGGAAAATATTGAAA
* * ** * * * * *
947119 AGTGAAACGAGTAGTGTATACGTGTTGTTCTTGATTACCTTAAACAAATAATGTAAAGATAATGT
1 AGTAAAACGAATAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGATGAGGC
* *
947184 GTTCGTAGTCCTACAGTTAGGATAATTGCCTTCCAATCAATATACTCAGGTTCGACTCCCAACAA
66 GTT-GTAGTCCAACAGTTAGGATAATTGCCTTCCAATCAATAGACTC-GGTTCGACTCCCAACAA
* *
947249 ACGCAATTACGATAGTAAAAAAATAAGAGGAAAATATTGAAA
129 ACGCAATTACGATAGTAAAAAATTAAGGGGAAAATATTGAAA
* * *
947291 AGTAAAACGAGTAGTGTATACGTGTTGTTATTGATTATGTGAAACAAATAGTGTAAAGAAGAGAG
1 AGTAAAACGAATAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGATGAG-G
* * * * ** *
947356 -G-TGTAGTCCAAC-GATTAGGATATAAATTTCCTTTCAAGCAATAGACCCTGGTTTTACTCCCT
65 CGTTGTAGTCCAACAG-TTAGG--AT-AATTGCCTTCCAATCAATAGACTC-GGTTCGACTCCCA
** * * * *
947418 ACAAACATAATTATGATTGT-AAAATTTAAGGGGAAAATTTTGAAA
125 ACAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAATATTGAAA
** ** * * *
947463 AGTAAAAC-AAGTAGTGTACTGGGT-TTGTTCCAGATTATGTGAAATAAATAGCGTAAAGAGGAG
1 AGTAAAACGAA-TAGTGTA-TACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGATGAG
* ** * * ** * * ***
947526 GGGTTTGTCTTCCAACCA-CTAGGATAATTGCCTTCTAGGCAATAAACCTTGGTTCGACAGGCAA
64 GCG-TTGTAGTCCAA-CAGTTAGGATAATTGCCTTCCAATCAATAGA-CTCGGTTCGACTCCCAA
* * * * *
947590 -AAAGGTAATTTCGATAGTAAAAAATTAA-AGGAAAACT-TTCAAA
126 CAAACGCAATTACGATAGTAAAAAATTAAGGGGAAAA-TATTGAAA
* * * * * * * * * *
947633 ATTAAAACAAACAGTGTTTACCT-TTCATGCTTGATCACGTGAAATAAATAGTGTAAAGAAT-AG
1 AGTAAAACGAATAGTGTATACGTGTT-GTTCTTGATTATGTGAAACAAATAGTGTAAAG-ATGAG
** * *
947696 GTATTTGTAGTCCAACAGTTAGGCTAATTACCTTCCAA
64 G-CGTTGTAGTCCAACAGTTAGGATAATTGCCTTCCAA
947734 GCAAATGAAT
Statistics
Matches: 1010, Mismatches: 208, Indels: 135
0.75 0.15 0.10
Matches are distributed among these distances:
153 2 0.00
154 56 0.06
155 61 0.06
156 1 0.00
157 1 0.00
162 2 0.00
164 3 0.00
167 1 0.00
168 12 0.01
169 9 0.01
170 111 0.11
171 212 0.21
172 453 0.45
173 60 0.06
174 24 0.02
175 2 0.00
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (170 bp):
AGTAAAACGAATAGTGTATACGTGTTGTTCTTGATTATGTGAAACAAATAGTGTAAAGATGAGGC
GTTGTAGTCCAACAGTTAGGATAATTGCCTTCCAATCAATAGACTCGGTTCGACTCCCAACAAAC
GCAATTACGATAGTAAAAAATTAAGGGGAAAATATTGAAA
Found at i:947377 original size:497 final size:494
Alignment explanation
Indices: 946422--947378 Score: 1221
Period size: 497 Copynumber: 1.9 Consensus size: 494
946412 AATCGCTATC
**
946422 GTAAAAAATTAAGGGGAGAATTTTAAAATGTAAAATGAACAGTGTATACATGTTAATCTTGATTA
1 GTAAAAAATTAAGGGGAGAATTTTAAAATGTAAAACAAACAGTGTATACATGTTAATCTTGATTA
* * * * * *
946487 CCTGAAACAAATAGTGTGAAGATGATGCGTTCGTATTACTACAGTTAGGATAATTGCCTTCCAAT
66 CCTGAAACAAATAGTGTAAAGACGAGGCATTCGTAGTACAACAGTTAGGATAATTGCCTTCCAAT
* * * *
946552 CAATAGACTCGGGTTCGACTCCCAACAAATGCAATTAGGATAGTAAAAAATTAAGGGGAAAATAT
131 AAATAGACTCGGGTTCGACTCCCAACAAAGGCAATTACGATAGTAAAAAATTAAAGGGAAAATAT
** *
946617 TGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTATTGATTATGTGAAACAAATAGTGTAAAGAA
196 TGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTATTGATTACCTGAAACAAATAATGTAAAGAA
*
946682 GAGGTGTAGTCCAACGATTAGGATAATAATTGCCTTCCAAGAAATAGACCTCGGTTAGACTCCCT
261 GAGGTGTAGTCCAACGATTAGG--AATAATTGCCTTCCAAGAAATAGACCTCGGTTAGACTCCCA
* * ** * * * **
946747 ACAAACGTAATTATGATAGTAAAAATTTAAGGGGAAAATTTTGAACAGTAAATTAAGTAGTGTAC
324 ACAAACGCAATTACGATAGTAAAAAAATAAGAGGAAAATATTGAAAAGTAAAACAAGTAGTGTAC
* * * *
946812 ATGTTTTGTTCTTGATTATGTGAAACAAATAGCGTAAAGAGGAGGTGTTGTCTTCCAACCACTAG
389 ACGTGTTGTTATTGATTATGTGAAACAAATAGCGTAAAGAGGAGGTGTAG--TTCCAACCACTAG
946877 GATATTTGCCTTCCAGGTAATAGCGAAAAAGGTAATTCTGATA
452 GATATTTGCCTTCCAGGTAATAGCGAAAAAGGTAATTCTGATA
* * **
946920 GTAAAAAATTAAGGGGA-AATTTTTAAAA-GTAAAACAAACAGTGTTTACCT-TTCGTGCTTGAT
1 GTAAAAAATTAAGGGGAGAA-TTTTAAAATGTAAAACAAACAGTGTATACATGTTAAT-CTTGAT
** * *
946982 TATGTGAAACAAATAGTGTAAAGACGAGGCATTTGTAGT-CGAACGGTTAGGATAATTGCCTTCC
64 TACCTGAAACAAATAGTGTAAAGACGAGGCATTCGTAGTAC-AACAGTTAGGATAATTGCCTTCC
* *
947046 AATAAATATACTCGGGTTCGACTCCCAACAAAGGCAATTACGATGGTAAAAAATTAAAGGGAAAA
128 AATAAATAGACTCGGGTTCGACTCCCAACAAAGGCAATTACGATAGTAAAAAATTAAAGGGAAAA
* * * * *
947111 TGTTGGAAAGTGAAACGAGTAGTGTATACGTGTTGTTCTTGATTACCTTAAACAAATAATGTAAA
193 TATTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTATTGATTACCTGAAACAAATAATGTAAA
* ** * *
947176 GATA-ATGTGTTCGTAGTCCTAC-AGTTAGG-ATAATTGCCTTCCAATCAATATA-CTCAGGTTC
258 GA-AGA-G-G-T-GTAGTCCAACGA-TTAGGAATAATTGCCTTCCAAGAAATAGACCTC-GGTTA
*
947237 GACTCCCAACAAACGCAATTACGATAGTAAAAAAATAAGAGGAAAATATTGAAAAGTAAAACGAG
316 GACTCCCAACAAACGCAATTACGATAGTAAAAAAATAAGAGGAAAATATTGAAAAGTAAAACAAG
* *
947302 TAGTGTATACGTGTTGTTATTGATTATGTGAAACAAATAGTGTAAAGAAGAGAGGTGTAG-TCCA
381 TAGTGTACACGTGTTGTTATTGATTATGTGAAACAAATAGCGTAAAG-AG-GAGGTGTAGTTCCA
* *
947366 ACGATTAGGATAT
444 ACCACTAGGATAT
947379 AAATTTCCTT
Statistics
Matches: 393, Mismatches: 54, Indels: 25
0.83 0.11 0.05
Matches are distributed among these distances:
496 4 0.01
497 215 0.55
498 147 0.37
499 3 0.01
500 10 0.03
501 14 0.04
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (494 bp):
GTAAAAAATTAAGGGGAGAATTTTAAAATGTAAAACAAACAGTGTATACATGTTAATCTTGATTA
CCTGAAACAAATAGTGTAAAGACGAGGCATTCGTAGTACAACAGTTAGGATAATTGCCTTCCAAT
AAATAGACTCGGGTTCGACTCCCAACAAAGGCAATTACGATAGTAAAAAATTAAAGGGAAAATAT
TGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTATTGATTACCTGAAACAAATAATGTAAAGAA
GAGGTGTAGTCCAACGATTAGGAATAATTGCCTTCCAAGAAATAGACCTCGGTTAGACTCCCAAC
AAACGCAATTACGATAGTAAAAAAATAAGAGGAAAATATTGAAAAGTAAAACAAGTAGTGTACAC
GTGTTGTTATTGATTATGTGAAACAAATAGCGTAAAGAGGAGGTGTAGTTCCAACCACTAGGATA
TTTGCCTTCCAGGTAATAGCGAAAAAGGTAATTCTGATA
Found at i:948278 original size:171 final size:169
Alignment explanation
Indices: 947741--948395 Score: 602
Period size: 171 Copynumber: 3.8 Consensus size: 169
947731 CAAGCAAATG
* * * * * *
947741 AATTACGAAT-GTAAACAATTAAGGGGTAAATTTTGAAAAGTAAATTGAGTATTGTATACATGTT
1 AATTAC-AATAGTAAA-AATTAAAGGGAAAATGTTGAAAAGTAAA-CGAGTAGTGTATACGTGTT
* * *
947805 GTTCTTGATTATGTAAAAGAAATAGTGT-GATAAGAGGCGTTTGTAGTCCAACGGTTAGGATAAT
63 GTTCTTGTTTATGTAAAAGAAATAGTATAAATAAGAGGCGTTT-TAGTCCAACGGTTAGGATAAT
* * *
947869 TGCCTTCCAAGCAATAGACCCGGATTCGACTCCCGGCAAATGC
127 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGGCAAACGC
* ** * *
947912 AATGACAATAGTAAAATATTAATTGGAAAATTTTAAAAAGTAGAACGAGTAGTGTATACGTGTTG
1 AATTACAATAGTAAAA-ATTAAAGGGAAAATGTTGAAAAGTA-AACGAGTAGTGTATACGTGTTG
* * * *
947977 TTCTTGATTGATTATGTGAAACAAATAGTATAAAGACGAGGCGTTTTTAGTCCAACGGTTAGGAT
64 TTCTTG--T--TTATGTAAAAGAAATAGTATAAATAAGAGGCG-TTTTAGTCCAACGGTTAGGAT
* * * * ** *
948042 AATTGCCTTTCAATCAATATACTCGGGTTTGACTCCCAACAAAGGC
124 AATTGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGGCAAACGC
* * *
948088 AATTACGATGGTAAAAAATTAAAGGGAAAATGTTGGAAAGTGAAACGAGTAGTGTATACGTGTTG
1 AATTACAATAGT-AAAAATTAAAGGGAAAATGTTGAAAAGT-AAACGAGTAGTGTATACGTGTTG
**
948153 TTCTTGTTTATGGT-AAAGAAATAGCT-TAAATAAGAGGCGTTTTAGTCCAACAATTAGGATAAT
64 TTCTTGTTTAT-GTAAAAGAAATAG-TATAAATAAGAGGCGTTTTAGTCCAACGGTTAGGATAAT
* * * * * *
948216 TTCCTTCCAAGCAAAAGACTTGGGTTCAACTCCCGGTAAACAC
127 TGCCTTCCAAGCAATAGACTCGGGTTCGACTCCCGGCAAACGC
* * * *
948259 AATTACAATTAGTAAAAATTTAAGGGTGAAATGTTTAAAAGTAAAACAAGTAGTGTATACGTGTT
1 AATTACAA-TAGTAAAAATTAAAGGG-AAAATGTTGAAAAGT-AAACGAGTAGTGTATACGTGTT
* * * * * * * * *
948324 ATTCGTT-ATTATGTGAAACAATTAAGTTTAAAGAAGTGGCGTTTGTAGTCCAATGGTTAGGAT-
63 GTTC-TTGTTTATGTAAAAGAAAT-AGTATAAATAAGAGGCGTTT-TAGTCCAACGGTTAGGATA
*
948387 ATTACCTTC
125 ATTGCCTTC
948396 TATGTAATAA
Statistics
Matches: 396, Mismatches: 68, Indels: 38
0.79 0.14 0.08
Matches are distributed among these distances:
170 4 0.01
171 127 0.32
172 76 0.19
173 29 0.07
174 16 0.04
175 17 0.04
176 119 0.30
177 8 0.02
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (169 bp):
AATTACAATAGTAAAAATTAAAGGGAAAATGTTGAAAAGTAAACGAGTAGTGTATACGTGTTGTT
CTTGTTTATGTAAAAGAAATAGTATAAATAAGAGGCGTTTTAGTCCAACGGTTAGGATAATTGCC
TTCCAAGCAATAGACTCGGGTTCGACTCCCGGCAAACGC
Found at i:949098 original size:168 final size:167
Alignment explanation
Indices: 948493--949133 Score: 579
Period size: 172 Copynumber: 3.8 Consensus size: 167
948483 CTACGCTTAG
* * * * * * * *
948493 GATAATTCCCTTAT-AAGCAATAGACTCGGGTTTGACTCCCGTCAAATG-AATTACGTTAGTAAA
1 GATAATTGCCTT-TCAAGTAATAGACCCGGGTTCGACTCCCGACAAACGCAATAACGATAGTAAA
* ** * ** * * * *
948556 CAATTAAAAGGAAATTTTTTCAAAGTAAAACGAGTAGTGTATTCGAGTTTTTATTCATTATGTGA
65 AAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTATTGATTATGTGA
*
948621 AACAAATAGTGTAAATAAGAGGCGTTTGTAGTCCAATGGTTAA
130 AACAAATAGTGTAAAGAAGA---G-TTGTAGTCCAAT-GTTAA
** * * ** * ** *
948664 GATAATTGCCTTTCAAGCGATAGACCTGGGTTTGACTCCCGGTAAACACAATCGCGATCGTAAAA
1 GATAATTGCCTTTCAAGTAATAGACCCGGGTTCGACTCCCGACAAACGCAATAACGATAGTAAAA
* * * * ** *
948729 AATTAAGGGGAGAATTTTAAAAAGTAAAACGAGTAGTGTATACATGTTGTTCTTGATTACCTTAA
66 AATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTATTGATTATGTGAA
* *
948794 ACAAATAGTGTAAAGATAATGTGTTCGTAGTCCTACA-GTTAG
131 ACAAATAGTGTAAAG--AA-GAGTT-GTAGTCC-A-ATGTTAA
* * * * * *
948836 GATAATTGCCTTCCAA-TCAATATACTCAGGTTCGACTCCCAACAAACGCAATTACGATAGTAAA
1 GATAATTGCCTTTCAAGT-AATAGACCCGGGTTCGACTCCCGACAAACGCAATAACGATAGTAAA
* * *
948900 AAAATAAGAGGAAAATATTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTATTGATTATGTGA
65 AAATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTATTGATTATGTGA
* *
948965 AACAAATAGTGTAAAGAAGAGATGTAGTCCAATGATTAT
130 AACAAATAGTGTAAAGAAGAGTTGTAGTCCAATG-TTAA
* * * * *
949004 GATAATTGTCTTTCAAGTAATAGACCCGGGTTGGACTCCCGACAAACGTAATAATGATAGCAAAA
1 GATAATTGCCTTTCAAGTAATAGACCCGGGTTCGACTCCCGACAAACGCAATAACGATAGTAAAA
* * * * * * *
949069 ATTTAAGGGGAAAATTTTGAAAAGTAAAACAAGAAGTGTACAGGTTTTGTTCTTGATTATGTGAA
66 AATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTATTGATTATGTGAA
949134 TGTTTGTCTT
Statistics
Matches: 378, Mismatches: 80, Indels: 27
0.78 0.16 0.06
Matches are distributed among these distances:
166 1 0.00
167 2 0.01
168 117 0.31
169 4 0.01
170 3 0.01
171 40 0.11
172 206 0.54
173 1 0.00
174 3 0.01
175 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.30
Consensus pattern (167 bp):
GATAATTGCCTTTCAAGTAATAGACCCGGGTTCGACTCCCGACAAACGCAATAACGATAGTAAAA
AATTAAGGGGAAAATTTTGAAAAGTAAAACGAGTAGTGTATACGTGTTGTTATTGATTATGTGAA
ACAAATAGTGTAAAGAAGAGTTGTAGTCCAATGTTAA
Done.