Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006272.1 Hibiscus syriacus cultivar Beakdansim tig00014954_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63435

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7963--8007
16
2.5
19
86
13
60
35
17
22
24
1.95
8526--8625
45
2.2
45
82
3
112
39
5
19
37
1.73
8737--8818
23
3.6
23
77
9
69
20
25
21
31
1.98
8826--8874
24
2.0
24
92
0
80
16
20
26
36
1.93
8921--8946
11
2.4
11
100
0
52
42
0
7
50
1.31
22302--22329
11
2.5
11
100
0
56
17
25
0
57
1.41
27977--28238
76
3.4
76
94
0
425
35
22
19
22
1.96
29082--29158
22
3.5
22
96
0
145
40
14
11
33
1.82
30513--30687
76
2.3
75
87
2
242
32
24
14
29
1.94
31618--31680
31
2.0
31
96
0
117
33
15
17
33
1.92
34129--34189
30
2.0
30
93
6
106
3
16
9
70
1.27
44482--44515
2
17.0
2
100
0
68
50
0
0
50
1.00
44844--44891
10
4.8
10
80
14
55
25
33
29
12
1.92
44845--44891
20
2.3
20
96
0
85
25
34
27
12
1.92
44878--44910
14
2.4
14
94
0
57
24
39
30
6
1.79
44856--44891
10
3.6
10
85
14
56
25
36
27
11
1.90
44892--44964
33
2.2
33
87
0
101
26
27
36
9
1.87
44907--44976
33
2.1
33
86
5
97
28
24
38
8
1.85
45065--45121
29
2.0
29
92
0
96
21
29
33
15
1.94
46188--46212
3
8.3
3
100
0
50
32
0
0
68
0.90
47316--47453
15
9.3
15
92
1
217
52
0
0
46
1.05
47477--47572
32
3.3
32
68
27
104
35
0
11
53
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47498--47540
22
2.0
22
95
0
77
34
0
16
48
1.46
47479--47604
54
2.3
54
95
0
225
37
0
10
52
1.36
47795--47823
10
2.9
10
100
0
58
20
17
31
31
1.96
50956--51001
21
2.2
21
85
14
60
34
6
4
54
1.46
51060--51104
21
2.1
22
87
4
65
24
17
22
35
1.95
51087--51119
17
2.0
17
94
5
59
24
18
18
39
1.92
52473--52560
19
4.8
18
77
13
83
22
34
20
22
1.97
54220--54244
2
12.5
2
100
0
50
48
0
0
52
1.00
54383--54441
29
2.0
29
83
0
73
25
20
6
47
1.74
54510--54677
68
2.5
68
88
0
230
31
25
13
29
1.93
54483--54942
225
2.1
225
89
4
713
30
23
13
32
1.93
54735--54927
68
2.8
68
83
4
255
31
22
14
31
1.94
55216--55377
59
2.7
59
90
0
243
35
20
11
32
1.89
55666--55885
94
2.3
95
81
4
257
25
20
16
36
1.93
59587--59637
2
25.5
2
100
0
102
49
0
0
50
1.00
59718--59917
110
1.8
110
82
0
256
27
22
8
42
1.82
59805--59961
81
1.9
81
85
0
215
28
24
10
36
1.88
59893--60029
68
2.0
68
82
0
166
28
24
15
31
1.95
59866--60173
144
2.1
144
86
4
420
27
25
14
31
1.95
60060--60230
68
2.6
65
81
9
179
28
27
15
28
1.96
60101--60241
68
2.1
68
85
2
185
29
28
16
25
1.97
60528--60688
59
2.7
60
83
3
202
36
18
10
34
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60977--61199
94
2.4
95
80
3
252
25
21
16
37
1.93
61266--61308
20
2.2
19
91
4
68
23
18
16
41
1.89
61277--61316
20
2.0
20
90
0
62
22
17
20
40
1.92
61789--61853
3
21.7
3
100
0
130
66
0
33
0
0.92
62480--62539
32
1.9
31
86
3
84
21
10
3
65
1.38

Tables:   1

The End!