Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006273.1 Hibiscus syriacus cultivar Beakdansim tig00014962_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71247

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37--66
14
2.1
14
100
0
60
53
13
13
20
1.72
217--264
21
2.3
21
88
0
69
6
37
10
45
1.64
5504--5638
46
3.0
45
89
5
193
41
13
23
21
1.88
5564--5704
66
2.2
65
89
3
214
41
12
24
21
1.87
5518--5749
109
2.1
111
89
4
353
41
12
25
21
1.87
5627--5761
46
2.9
46
91
0
216
45
9
23
21
1.81
5645--5795
26
6.3
26
70
20
87
45
8
23
22
1.80
5516--5749
20
10.6
20
70
17
144
41
12
25
21
1.88
5717--5756
20
2.0
20
85
0
53
45
7
27
20
1.78
6957--6992
18
2.0
18
100
0
72
22
11
16
50
1.77
9325--9367
22
2.0
22
86
9
61
18
4
27
48
1.68
13030--13161
66
2.0
66
83
5
169
27
33
13
25
1.94
15538--15583
24
1.9
24
90
0
74
54
15
8
21
1.68
15543--15595
24
2.2
24
79
0
61
56
15
11
16
1.67
15543--15595
12
4.4
12
73
0
52
56
15
11
16
1.67
29432--29523
48
1.9
48
86
4
132
47
14
11
26
1.78
29431--29500
24
2.9
24
80
0
77
50
14
11
24
1.75
33074--33165
48
1.9
48
86
4
132
47
14
11
26
1.78
33073--33142
24
2.9
24
80
0
77
50
14
11
24
1.75
36714--36805
48
1.9
48
86
4
132
47
14
11
26
1.78
36713--36782
24
2.9
24
80
0
77
50
14
11
24
1.75
40351--40442
48
1.9
48
86
4
132
47
14
11
26
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40350--40419
24
2.9
24
80
0
77
50
14
11
24
1.75
43989--44060
24
3.0
24
85
0
99
50
18
12
19
1.78
51649--51673
10
2.5
10
100
0
50
60
12
8
20
1.57
61313--61390
40
2.0
39
97
2
147
24
17
24
33
1.97
61495--61647
44
3.5
44
91
4
256
39
9
22
29
1.85

Tables:   1

The End!