genome.fa.s6274.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006274.1 Hibiscus syriacus cultivar Beakdansim tig00014964_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62078

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--295	81	3.6	81	93	4	497	36	22	13	27	1.92
1028--1070	16	2.6	17	82	10	54	51	6	9	32	1.61
1397--1462	1	66.0	1	78	0	69	0	10	0	89	0.49
1404--1457	12	4.7	12	90	4	76	0	11	0	88	0.50
1398--1464	14	4.9	14	85	12	95	0	11	0	88	0.53
12736--12781	16	2.9	16	77	3	58	63	0	0	36	0.95
13665--13706	15	2.9	14	89	7	57	0	21	2	76	0.90
13665--13706	20	2.1	20	86	8	59	0	21	2	76	0.90
14143--14224	12	7.2	11	84	9	69	58	0	0	41	0.98
14155--14226	3	24.0	3	91	0	117	62	0	0	37	0.95
14575--14676	34	2.9	36	91	5	172	44	13	14	27	1.83
15122--15165	2	22.5	2	90	4	72	45	0	0	54	0.99
15270--15304	16	2.1	18	89	10	56	25	8	0	65	1.21
18495--18584	16	5.9	14	73	21	74	76	6	15	1	1.04
18496--18584	23	3.8	23	76	24	87	76	6	15	1	1.05
18495--18584	7	11.7	7	76	19	74	76	6	15	1	1.04
19221--19269	22	2.2	22	92	0	80	32	24	14	28	1.94
19684--19719	18	2.0	18	88	0	54	19	8	30	41	1.81
20062--20479	36	11.8	36	73	12	156	26	18	14	40	1.89
20157--20480	72	4.6	72	75	11	242	27	18	14	39	1.90
20200--20480	72	4.0	71	75	12	292	26	19	13	40	1.88
20255--20443	102	1.9	102	86	4	274	28	17	12	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20219--20543	138	2.4	137	83	2	427	28	19	12	40	1.88
20438--20612	67	2.6	65	84	6	217	32	21	9	36	1.85
20429--20611	68	2.7	67	84	4	219	30	21	9	38	1.85
21255--22298	105	10.0	105	93	1	1693	33	26	17	22	1.96
22846--22947	34	2.9	36	85	5	145	44	12	12	30	1.80
22850--22981	37	3.7	35	81	5	140	42	12	12	33	1.79
23528--23562	16	2.1	18	89	10	56	25	8	0	65	1.21
25125--25189	3	21.0	3	90	6	103	32	1	1	64	1.12
25190--25250	22	2.8	22	92	0	95	49	27	1	21	1.59
25256--25340	33	2.6	33	90	0	125	20	38	4	36	1.73
25363--25498	2	68.0	2	100	0	272	50	0	0	50	1.00
31411--31452	22	1.9	22	85	0	57	42	14	16	26	1.86
31490--31605	30	3.9	30	77	8	119	57	18	6	16	1.61
37771--37928	63	2.5	63	84	3	183	34	22	20	22	1.97
38492--38600	18	5.9	18	87	4	155	20	20	31	28	1.97
38492--38600	38	3.0	36	84	5	146	20	20	31	28	1.97
44087--44122	2	18.0	2	94	0	63	52	0	0	47	1.00
44436--44463	2	14.0	2	100	0	56	50	0	0	50	1.00
45017--45217	100	2.0	100	97	0	375	38	15	4	40	1.69
47602--47737	70	1.9	70	94	2	238	41	24	5	27	1.78
49247--49358	59	1.9	59	82	10	140	39	12	15	33	1.85
50195--50294	29	3.4	29	85	6	139	37	13	12	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58020--58063	3	14.0	3	86	9	52	61	0	0	38	0.96
58008--58051	16	2.5	17	82	14	54	63	0	2	34	1.07
58020--58063	16	2.8	16	89	0	61	61	0	0	38	0.96
58020--58063	19	2.3	19	88	0	61	61	0	0	38	0.96
58547--58662	36	3.2	36	83	1	151	37	12	20	29	1.90
58565--58679	36	3.2	34	76	16	108	39	13	20	26	1.90
58929--59690	106	7.2	106	94	0	1301	22	18	25	33	1.96
61035--61106	7	9.6	8	71	19	50	0	15	6	77	0.96
61036--61108	22	3.3	22	81	9	78	0	13	8	78	0.97
61044--61112	29	2.4	29	85	9	88	0	13	7	79	0.92
61047--61107	21	2.8	22	90	7	90	0	13	8	78	0.95

Tables:   1

The End!