genome.fa.s6275.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006275.1 Hibiscus syriacus cultivar Beakdansim tig00014966_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48132

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1730--2013	49	5.9	49	92	2	468	42	0	12	45	1.41
2011--2045	17	2.0	18	94	5	63	57	0	5	37	1.23
2540--2580	11	3.7	12	78	15	52	36	14	0	48	1.44
2531--2580	22	2.2	23	89	3	75	36	14	0	50	1.43
2554--2648	30	3.2	30	81	11	97	44	10	1	44	1.45
3458--3516	11	5.2	11	76	8	64	38	18	22	20	1.93
3451--3516	23	2.9	23	90	0	105	39	18	22	19	1.92
3456--3510	12	4.8	12	76	14	62	40	18	20	21	1.92
3671--3749	29	2.7	29	98	0	149	20	24	37	17	1.93
4302--4362	17	3.4	17	74	14	59	45	11	0	42	1.40
4761--4918	49	3.4	47	78	13	139	51	9	0	38	1.34
4833--4895	28	2.2	30	88	5	94	58	9	0	31	1.30
4872--4915	21	2.1	21	91	0	70	56	11	0	31	1.35
4837--4902	28	2.4	28	82	10	89	57	9	0	33	1.30
5633--5662	13	2.3	13	100	0	60	30	26	13	30	1.94
7624--7653	14	2.1	14	93	0	51	16	30	30	23	1.96
22942--23016	37	2.0	37	89	5	116	38	12	14	34	1.83
23633--23670	3	12.7	3	94	0	67	31	0	2	65	1.06
24607--24646	19	2.1	19	100	0	80	20	17	15	47	1.83
26962--27024	12	5.4	11	74	20	56	82	4	11	1	0.88
26968--27024	13	4.4	12	77	18	53	82	5	10	1	0.90
26962--27029	14	4.9	14	75	15	61	80	4	11	2	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26959--27013	27	2.1	27	86	10	78	81	5	10	1	0.92
26959--27024	29	2.4	27	82	9	73	81	6	10	1	0.92
28098--28186	32	2.8	32	84	0	106	26	13	24	34	1.93
28907--29007	21	5.4	21	61	26	64	24	19	12	42	1.87
28877--29027	36	4.2	36	94	0	266	27	19	13	39	1.90
29043--29201	37	4.4	36	84	3	203	24	20	13	41	1.88
28905--29165	138	1.9	138	90	1	416	25	19	13	41	1.88
29239--29414	83	2.1	85	87	4	250	34	22	18	25	1.96
37652--37681	12	2.5	12	94	0	51	30	30	40	0	1.57
39542--39612	37	1.9	37	94	0	124	42	12	11	33	1.79
40128--40196	29	2.4	29	82	4	77	31	8	0	59	1.28
47120--47172	28	2.0	27	88	7	81	39	5	20	33	1.76
47247--47329	27	3.2	28	70	20	81	33	6	8	51	1.57
47455--47507	26	2.1	26	85	3	72	50	11	1	35	1.49

Tables:   1

The End!