Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006276.1 Hibiscus syriacus cultivar Beakdansim tig00014968_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97707
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:6625 original size:18 final size:18
Alignment explanation
Indices: 6602--6639 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
6592 ACGAAGACCC
6602 GAGGAGGATCGACTTCCA
1 GAGGAGGATCGACTTCCA
6620 GAGGAGGATCGACTTCCA
1 GAGGAGGATCGACTTCCA
6638 GA
1 GA
6640 TGAGTCTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.21, G:0.34, T:0.16
Consensus pattern (18 bp):
GAGGAGGATCGACTTCCA
Found at i:11299 original size:15 final size:15
Alignment explanation
Indices: 11279--11325 Score: 76
Period size: 15 Copynumber: 3.1 Consensus size: 15
11269 TTAGCTGGGT
*
11279 GGGCGGATGTGGGGC
1 GGGCGGATGCGGGGC
*
11294 GGGCGGATGCGGGAC
1 GGGCGGATGCGGGGC
11309 GGGCGGATGCGGGGC
1 GGGCGGATGCGGGGC
11324 GG
1 GG
11326 ATAATGTCTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.09, C:0.17, G:0.66, T:0.09
Consensus pattern (15 bp):
GGGCGGATGCGGGGC
Found at i:14549 original size:2 final size:2
Alignment explanation
Indices: 14542--14567 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14532 AATTACTCAC
14542 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
14568 TAATATTAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20600 original size:2 final size:2
Alignment explanation
Indices: 20593--20618 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
20583 AAAATTACTC
20593 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
20619 TAAGTGCACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:31432 original size:35 final size:35
Alignment explanation
Indices: 31393--31630 Score: 205
Period size: 37 Copynumber: 6.6 Consensus size: 35
31383 ACGGTATTCG
31393 AAATATATATATATATAGTTTTGAAAATATTTTGA
1 AAATATATATATATATAGTTTTGAAAATATTTTGA
* * *
31428 AAATATATACATTATATGGTTTTG-AAATTTTTTGA
1 AAATATATATA-TATATAGTTTTGAAAATATTTTGA
* * * *
31463 AAACATATAT-TATATAGTTTTTAAAGTATTTTTTA
1 AAATATATATATATATAGTTTTGAAAATA-TTTTGA
*
31498 AAATATATATAATATATAGTTTTTGAAAATATTTTTA
1 AAATATATAT-ATATATAG-TTTTGAAAATATTTTGA
* * * * *
31535 AAAAACATATATTATATAATTTTTGAAAACATTTTTA
1 AAATATATATA-TATAT-AGTTTTGAAAATATTTTGA
* * *
31572 AAA-ACATATATTATATAATTTTTAAAACCT-TTTTGA
1 AAATATATATA-TATATAGTTTTGAAAA--TATTTTGA
*
31608 AAACATATATAATATATAGTTTT
1 AAATATATAT-ATATATAGTTTT
31631 TTAAAAATAT
Statistics
Matches: 168, Mismatches: 23, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
33 10 0.06
34 3 0.02
35 51 0.30
36 33 0.20
37 60 0.36
38 11 0.07
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (35 bp):
AAATATATATATATATAGTTTTGAAAATATTTTGA
Found at i:31496 original size:37 final size:36
Alignment explanation
Indices: 31397--31645 Score: 201
Period size: 36 Copynumber: 6.8 Consensus size: 36
31387 TATTCGAAAT
* *
31397 ATATATATATATAG-TTTTGAAA-ATATTTTGAAAATAT
1 ATATAT-TATATAGTTTTTGAAATAT-TTTTTAAAA-AC
* * *
31434 ATACATTATAT-GGTTTTG-AA-ATTTTTTGAAAAC
1 ATATATTATATAGTTTTTGAAATATTTTTTAAAAAC
*
31467 ATATATTATATAGTTTTT-AAAGTATTTTTTAAAATAT
1 ATATATTATATAGTTTTTGAAA-TATTTTTTAAAA-AC
* *
31504 ATATAATATATAGTTTTTGAAAATATTTTTAAAAAAC
1 ATATATTATATAGTTTTTG-AAATATTTTTTAAAAAC
* *
31541 ATATATTATATAATTTTTGAAA-ACATTTTTAAAAAC
1 ATATATTATATAGTTTTTGAAATA-TTTTTTAAAAAC
* * *
31577 ATATATTATATAATTTTT-AAA-ACCTTTTTGAAAAC
1 ATATATTATATAGTTTTTGAAATA-TTTTTTAAAAAC
*
31612 ATATATAATATATAGTTTTTTAAAAATATTTTTT
1 ATATAT--TATATAG-TTTTT-GAAATATTTTTT
31646 GAATTTATAT
Statistics
Matches: 178, Mismatches: 19, Indels: 27
0.79 0.08 0.12
Matches are distributed among these distances:
33 11 0.06
34 14 0.08
35 27 0.15
36 51 0.29
37 47 0.26
38 16 0.09
39 3 0.02
40 8 0.04
41 1 0.01
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (36 bp):
ATATATTATATAGTTTTTGAAATATTTTTTAAAAAC
Found at i:31773 original size:29 final size:27
Alignment explanation
Indices: 31697--31791 Score: 79
Period size: 29 Copynumber: 3.3 Consensus size: 27
31687 TTGAAAACAT
31697 TTTTATTTTTTATTTATTTTGTTATTATTA
1 TTTTA-TTTTTATTTA--TTGTTATTATTA
* *
31727 TTTTGTTATTATTGTTATTGTTATTATTA
1 TTTTATTTTTA-T-TTATTGTTATTATTA
31756 TAATTTATTTTTATTTA-T-TTATTTATTA
1 T--TTTATTTTTATTTATTGTTA-TTATTA
31784 TTTT-TTTT
1 TTTTATTTT
31792 GTCAGGGTCA
Statistics
Matches: 56, Mismatches: 4, Indels: 15
0.75 0.05 0.20
Matches are distributed among these distances:
25 4 0.07
26 3 0.05
27 3 0.05
28 8 0.14
29 21 0.38
30 6 0.11
31 11 0.20
ACGTcount: A:0.21, C:0.00, G:0.04, T:0.75
Consensus pattern (27 bp):
TTTTATTTTTATTTATTGTTATTATTA
Found at i:31782 original size:12 final size:11
Alignment explanation
Indices: 31698--31782 Score: 50
Period size: 11 Copynumber: 7.2 Consensus size: 11
31688 TGAAAACATT
*
31698 TTTATTTTTTA
1 TTTATTATTTA
*
31709 TTTATTTTGTTA
1 TTTATTAT-TTA
31721 -TTATTATTT-
1 TTTATTATTTA
31730 TGTTATTATTGTTA
1 T-TTATTA-T-TTA
31744 TTGTTATTATTATAA
1 -T-TTATTATT-T-A
31759 TTTATT-TTTA
1 TTTATTATTTA
31769 TTTATTTATTTA
1 TTTA-TTATTTA
31781 TT
1 TT
31783 ATTTTTTTTG
Statistics
Matches: 62, Mismatches: 1, Indels: 21
0.74 0.01 0.25
Matches are distributed among these distances:
10 7 0.11
11 23 0.37
12 12 0.19
13 8 0.13
14 3 0.05
15 9 0.15
ACGTcount: A:0.22, C:0.00, G:0.05, T:0.73
Consensus pattern (11 bp):
TTTATTATTTA
Found at i:33160 original size:18 final size:17
Alignment explanation
Indices: 33118--33163 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
33108 ATTAATTTTA
*
33118 TTTTATTTCTCATTATT
1 TTTTATTTTTCATTATT
*
33135 TTACTATTTTTACATTATT
1 TT-TTATTTTT-CATTATT
33154 TTTTATTTTT
1 TTTTATTTTT
33164 TTTAATATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 2 0.08
18 13 0.54
19 9 0.38
ACGTcount: A:0.20, C:0.09, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTATTTTTCATTATT
Found at i:33289 original size:18 final size:15
Alignment explanation
Indices: 33275--33305 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
33265 TTCTCTTTAG
33275 TTTTTTTATTATCTT
1 TTTTTTTATTATCTT
33290 TTTTTTTATTAT-TT
1 TTTTTTTATTATCTT
33304 TT
1 TT
33306 CTCATTAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTTTATTATCTT
Found at i:38648 original size:84 final size:84
Alignment explanation
Indices: 38484--39048 Score: 566
Period size: 84 Copynumber: 6.8 Consensus size: 84
38474 TTACTCGCAA
* * * * * * *
38484 CATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCAGTTC
1 CATAACTTAAGTCGAGAAGGGTTATCTTCTAACCAAAGACCTTCGAGTTCGACTACACTCAGCTC
* * *
38549 AAAGGCACATAATTTGCAG
66 CAAGGAACATCATTTGCAG
* * * * * *
38568 AATAGCTTAAGTCGAGAAGGGTAATCTTCTATCCAAAGACCTTCGAGTTTGACTACGCTCAGCTC
1 CATAACTTAAGTCGAGAAGGGTTATCTTCTAACCAAAGACCTTCGAGTTCGACTACACTCAGCTC
*
38633 CAAGGAATATCATTTGCAG
66 CAAGGAACATCATTTGCAG
* * * * *
38652 TATAACTTAAGTCAAGAAGGTTTATTTTCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTC
1 CATAACTTAAGTCGAGAAGGGTTATCTTCTAACCAAAGACCTTCGAGTTCGACTACACTCAGCTC
* *
38717 CAAGGCACATCATTTGTAG
66 CAAGGAACATCATTTGCAG
* * * * *
38736 CATAGCTTAAGTCGAGAAGGGCTA---TCT-GCCAAAGACCCTCGAGTTCGATTACACTCAGCTT
1 CATAACTTAAGTCGAGAAGGGTTATCTTCTAACCAAAGACCTTCGAGTTCGACTACACTCAGC-T
* *
38797 CGAGGGAACATCATTTGCAG
65 CCAAGGAACATCATTTGCAG
* * * * * * * *
38817 CATAACTCAAGGCTAGAAGGGTTAT-TTGTAACCAAAATACCTTCAAGTTCGATTACGCTCAGCT
1 CATAACTTAAGTCGAGAAGGGTTATCTTCTAACC-AAAGACCTTCGAGTTCGACTACACTCAGCT
* * *
38881 TCAA-GACATATCATTTACAG
65 CCAAGGA-ACATCATTTGCAG
* * * * *
38901 TATAACTTAAGTCAAGAAGGGTTATCTGCTAACCAAAGACCTTCGAGTTCGACTACGCTCAACTC
1 CATAACTTAAGTCGAGAAGGGTTATCTTCTAACCAAAGACCTTCGAGTTCGACTACACTCAGCTC
*
38966 CAAGGCACATCATTTGCAG
66 CAAGGAACATCATTTGCAG
* * * ** * *
38985 CATAACTTAAGTCGAGAAGGGCTATCTGCCAACTGAAGACCTTCGAGTTTGATTACACTCAGCT
1 CATAACTTAAGTCGAGAAGGGTTATCTTCTAACCAAAGACCTTCGAGTTCGACTACACTCAGCT
39049 TAGAGGCAAA
Statistics
Matches: 390, Mismatches: 83, Indels: 16
0.80 0.17 0.03
Matches are distributed among these distances:
80 29 0.07
81 38 0.10
83 4 0.01
84 287 0.74
85 32 0.08
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (84 bp):
CATAACTTAAGTCGAGAAGGGTTATCTTCTAACCAAAGACCTTCGAGTTCGACTACACTCAGCTC
CAAGGAACATCATTTGCAG
Found at i:38955 original size:249 final size:250
Alignment explanation
Indices: 38484--39054 Score: 736
Period size: 249 Copynumber: 2.3 Consensus size: 250
38474 TTACTCGCAA
* * * * *
38484 CATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCAG-TT
1 CATAACTTAAGTCGAGAAGGGCTATCTG-C--CAAAAGACCTTCGAGTTCGATTACACTCAGCTT
* * * * * * * *
38548 CAAAGGCACATAATTTGCAGAATAGCTTAAGTCGAGAAGGGTAATCTTCTATCCAAAGACCTTCG
63 CGAGGGAACATAATTTGCAGAATAACTCAAGGCGAGAAGGGTAATCTTCTAACCAAAGACCTTCA
* * * *
38613 AGTTTGACTACGCTCAGCTCCAAGGAATATCATTTGCAGTATAACTTAAGTCAAGAAGGTTTATT
128 AGTTCGACTACGCTCAGCTCCAAGGAATATCATTTACAGTATAACTTAAGTCAAGAAGGGTTATC
* * *
38678 TTCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTGTAG
193 TGCCAACCAAAGACCTTCGAGTTCGACTACACTCAACTCCAAGGCACATCATTTGCAG
* *
38736 CATAGCTTAAGTCGAGAAGGGCTATCTGCC-AAAGACCCTCGAGTTCGATTACACTCAGCTTCGA
1 CATAACTTAAGTCGAGAAGGGCTATCTGCCAAAAGACCTTCGAGTTCGATTACACTCAGCTTCGA
* * * * * *
38800 GGGAACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTAT-TTGTAACCAAAATACCTTCAAG
66 GGGAACATAATTTGCAGAATAACTCAAGGCGAGAAGGGTAATCTTCTAACC-AAAGACCTTCAAG
* *
38864 TTCGATTACGCTCAGCTTCAA-GACATATCATTTACAGTATAACTTAAGTCAAGAAGGGTTATCT
130 TTCGACTACGCTCAGCTCCAAGGA-ATATCATTTACAGTATAACTTAAGTCAAGAAGGGTTATCT
* *
38928 GCTAACCAAAGACCTTCGAGTTCGACTACGCTCAACTCCAAGGCACATCATTTGCAG
194 GCCAACCAAAGACCTTCGAGTTCGACTACACTCAACTCCAAGGCACATCATTTGCAG
*
38985 CATAACTTAAGTCGAGAAGGGCTATCTGCCAACTGAAGACCTTCGAGTTTGATTACACTCAGCTT
1 CATAACTTAAGTCGAGAAGGGCTATCTGCCAA---AAGACCTTCGAGTTCGATTACACTCAGCTT
*
39050 AGAGG
63 CGAGG
39055 CAAACCAAGT
Statistics
Matches: 276, Mismatches: 36, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
248 34 0.12
249 185 0.67
250 1 0.00
251 1 0.00
252 23 0.08
253 32 0.12
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (250 bp):
CATAACTTAAGTCGAGAAGGGCTATCTGCCAAAAGACCTTCGAGTTCGATTACACTCAGCTTCGA
GGGAACATAATTTGCAGAATAACTCAAGGCGAGAAGGGTAATCTTCTAACCAAAGACCTTCAAGT
TCGACTACGCTCAGCTCCAAGGAATATCATTTACAGTATAACTTAAGTCAAGAAGGGTTATCTGC
CAACCAAAGACCTTCGAGTTCGACTACACTCAACTCCAAGGCACATCATTTGCAG
Found at i:39628 original size:30 final size:30
Alignment explanation
Indices: 39592--39653 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
39582 TAATATAGTT
* * *
39592 TAATTTTTTGCAAATGTTTTTAAAAAAATA
1 TAATTTTTAGAAAATGGTTTTAAAAAAATA
* *
39622 TAATTTTTAGAAAATGGTTTTCAAAATATA
1 TAATTTTTAGAAAATGGTTTTAAAAAAATA
39652 TA
1 TA
39654 TATATATATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.45
Consensus pattern (30 bp):
TAATTTTTAGAAAATGGTTTTAAAAAAATA
Found at i:39691 original size:36 final size:36
Alignment explanation
Indices: 39651--39733 Score: 89
Period size: 36 Copynumber: 2.3 Consensus size: 36
39641 TTCAAAATAT
*
39651 ATATATATATATATATAG-TTTGAAAATATTTTGAAA-
1 ATATATACAT-TATATAGTTTTGAAAA-ATTTTGAAAC
* * *
39687 ATATAAACATTATATGGTTTTGAAAACTTTTGAAAC
1 ATATATACATTATATAGTTTTGAAAAATTTTGAAAC
39723 ATATATTACAT
1 ATATA-TACAT
39734 AGTTTTTAAG
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
35 14 0.36
36 21 0.54
37 4 0.10
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (36 bp):
ATATATACATTATATAGTTTTGAAAAATTTTGAAAC
Found at i:39773 original size:82 final size:82
Alignment explanation
Indices: 39686--39852 Score: 200
Period size: 82 Copynumber: 2.1 Consensus size: 82
39676 ATATTTTGAA
* * * *
39686 AATATAAACATTATAT-GGTTTTGAAAAC-TTTT-GAAACATATATTACATAGTTTTT-AAGACA
1 AATATATATATTATATAGGTTTTGAAAACATTTTAAAAACATATATTACATAGTTTTTGAAAAC-
39747 AATTTTAAAAA-ATATAT
65 AATTTTAAAAACATATAT
* * *
39764 AATATATATATTATATAGTTTTTGAAAACATTTTTAAAAACATATTTTATATAGTTTTTGAAAAC
1 AATATATATATTATATAGGTTTTGAAAACA-TTTTAAAAACATATATTACATAGTTTTTGAAAAC
*
39829 ATTTTTAAAAACATATAT
65 AATTTTAAAAACATATAT
*
39847 TATATA
1 AATATA
39853 ATTTTTAAAA
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
78 14 0.19
79 11 0.15
81 4 0.05
82 30 0.41
83 15 0.20
ACGTcount: A:0.46, C:0.05, G:0.06, T:0.43
Consensus pattern (82 bp):
AATATATATATTATATAGGTTTTGAAAACATTTTAAAAACATATATTACATAGTTTTTGAAAACA
ATTTTAAAAACATATAT
Found at i:39803 original size:12 final size:12
Alignment explanation
Indices: 39782--39842 Score: 61
Period size: 12 Copynumber: 5.1 Consensus size: 12
39772 TATTATATAG
*
39782 TTTTTGAAAACA
1 TTTTTAAAAACA
39794 TTTTTAAAAACA
1 TTTTTAAAAACA
* * *
39806 TATTTTATATA-G
1 T-TTTTAAAAACA
*
39818 TTTTTGAAAACA
1 TTTTTAAAAACA
39830 TTTTTAAAAACA
1 TTTTTAAAAACA
39842 T
1 T
39843 ATATTATATA
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
11 6 0.16
12 25 0.66
13 7 0.18
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.46
Consensus pattern (12 bp):
TTTTTAAAAACA
Found at i:39879 original size:35 final size:36
Alignment explanation
Indices: 39769--39900 Score: 185
Period size: 36 Copynumber: 3.6 Consensus size: 36
39759 TATATAATAT
39769 ATATATTATATAGTTTTTGAAAACATTTTTAAAAAC
1 ATATATTATATAGTTTTTGAAAACATTTTTAAAAAC
*
39805 ATATTTTATATAGTTTTTGAAAACATTTTTAAAAAC
1 ATATATTATATAGTTTTTGAAAACATTTTTAAAAAC
* * * *
39841 ATATATTATATAATTTTT-AAAACCTTTTTGAAATC
1 ATATATTATATAGTTTTTGAAAACATTTTTAAAAAC
*
39876 ATATATAATATATAGTTTTTAAAAA
1 ATATAT--TATATAGTTTTTGAAAA
39901 ATATTTTTTG
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
35 20 0.23
36 51 0.59
37 11 0.13
38 4 0.05
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (36 bp):
ATATATTATATAGTTTTTGAAAACATTTTTAAAAAC
Found at i:47742 original size:13 final size:13
Alignment explanation
Indices: 47724--47753 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
47714 AAATATTCTC
47724 TTATTTTTTATTT
1 TTATTTTTTATTT
47737 TTATTTTTTATTT
1 TTATTTTTTATTT
47750 TTAT
1 TTAT
47754 CGAGTATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (13 bp):
TTATTTTTTATTT
Found at i:48932 original size:2 final size:2
Alignment explanation
Indices: 48925--48966 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
48915 GGGAATAAGA
48925 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
48967 GAAGGAAGCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:50230 original size:29 final size:31
Alignment explanation
Indices: 50181--50245 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 31
50171 CCAACAGTTT
* *
50181 GTTTAGTGACCAAAATGTAAA-TTTTG-AAA
1 GTTTAGTGACCAAAATATAAAGTTTGGAAAA
*
50210 GTTTAGT-AGCCAAAGTATAAAGTTTGGAAAA
1 GTTTAGTGA-CCAAAATATAAAGTTTGGAAAA
50241 GTTTA
1 GTTTA
50246 AGGGCTAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
28 1 0.03
29 17 0.57
30 4 0.13
31 8 0.27
ACGTcount: A:0.40, C:0.06, G:0.20, T:0.34
Consensus pattern (31 bp):
GTTTAGTGACCAAAATATAAAGTTTGGAAAA
Found at i:50276 original size:15 final size:16
Alignment explanation
Indices: 50237--50279 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
50227 TAAAGTTTGG
*
50237 AAAAGTTTAAGGGCTA
1 AAAAGTTTAAGGACTA
50253 ATTAAAGTTTAAGGACT-
1 A--AAAGTTTAAGGACTA
50270 AAAAGTTTAA
1 AAAAGTTTAA
50280 TTTTCAAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
15 9 0.38
16 1 0.04
17 1 0.04
18 13 0.54
ACGTcount: A:0.47, C:0.05, G:0.19, T:0.30
Consensus pattern (16 bp):
AAAAGTTTAAGGACTA
Found at i:51394 original size:6 final size:6
Alignment explanation
Indices: 51383--51412 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
51373 AAATATTATC
51383 TTATTT TTATTT TTATTT TATATTT TTATT
1 TTATTT TTATTT TTATTT T-TATTT TTATT
51413 GAGTATTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
TTATTT
Found at i:51408 original size:13 final size:12
Alignment explanation
Indices: 51383--51412 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
51373 AAATATTATC
51383 TTATTTTTATTT
1 TTATTTTTATTT
51395 TTATTTTATATTT
1 TTATTTT-TATTT
51408 TTATT
1 TTATT
51413 GAGTATTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (12 bp):
TTATTTTTATTT
Found at i:53610 original size:32 final size:31
Alignment explanation
Indices: 53574--53650 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 31
53564 CGGGGCCGTG
*
53574 GGGCCTACCTAAGAACACATCTTAGGGCCGCA
1 GGGCCTACCTAAGAACA-ATCTCAGGGCCGCA
** *
53606 GGGCCTACCCGAGAATAATCTCAGGGCCGCA
1 GGGCCTACCTAAGAACAATCTCAGGGCCGCA
*
53637 GAGCCTACCTAAGA
1 GGGCCTACCTAAGA
53651 GTCACATTAG
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
31 24 0.63
32 14 0.37
ACGTcount: A:0.29, C:0.31, G:0.26, T:0.14
Consensus pattern (31 bp):
GGGCCTACCTAAGAACAATCTCAGGGCCGCA
Found at i:53633 original size:63 final size:63
Alignment explanation
Indices: 53527--53650 Score: 153
Period size: 63 Copynumber: 2.0 Consensus size: 63
53517 CCCTAAGGGA
* * ** *
53527 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATTTCGGGGCCGTGGGGCCTACCTAAGAAC
1 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
* *
53590 ACATCTTAGGGCC-GCAGGGCCTACCCGAGAATA-ATCTCAGGGCCGCAGAGCCTACCTAAGA
1 ACATCTTAGGGCCTG-AGAGCCTACCCAAG-ATAGATCTCAGGGCCGCAGAGCCTACCTAAGA
53651 GTCACATTAG
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
62 1 0.02
63 48 0.92
64 3 0.06
ACGTcount: A:0.27, C:0.29, G:0.27, T:0.17
Consensus pattern (63 bp):
ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
Found at i:54549 original size:5 final size:5
Alignment explanation
Indices: 54539--54591 Score: 52
Period size: 5 Copynumber: 9.8 Consensus size: 5
54529 AACGGTCAAC
* *
54539 GGTCG GGTCG GGTCAAC GGTCG GGTCG GGTCG GGTCAAC GGTCG GGTCG
1 GGTCG GGTCG GGTC--G GGTCG GGTCG GGTCG GGTC--G GGTCG GGTCG
54588 GGTC
1 GGTC
54592 AGATCGGTCA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
5 32 0.80
7 8 0.20
ACGTcount: A:0.08, C:0.23, G:0.51, T:0.19
Consensus pattern (5 bp):
GGTCG
Found at i:54554 original size:17 final size:17
Alignment explanation
Indices: 54532--54592 Score: 77
Period size: 17 Copynumber: 3.3 Consensus size: 17
54522 AACGGTCAAC
54532 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
54549 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAA----C-GGTCGGGTCG
54571 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
54588 GGTCA
1 GGTCA
54593 GATCGGTCAA
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
17 21 0.54
18 1 0.03
21 1 0.03
22 16 0.41
ACGTcount: A:0.11, C:0.23, G:0.48, T:0.18
Consensus pattern (17 bp):
GGTCAACGGTCGGGTCG
Found at i:54567 original size:22 final size:22
Alignment explanation
Indices: 54525--54591 Score: 107
Period size: 22 Copynumber: 3.0 Consensus size: 22
54515 GAAAGTCAAC
*
54525 GGTCAACGGTCAACGGTCGGGTCG
1 GGTCAACGGTC--GGGTCGGGTCG
54549 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
54571 GGTCAACGGTCGGGTCGGGTC
1 GGTCAACGGTCGGGTCGGGTC
54592 AGATCGGTCA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
22 31 0.74
24 11 0.26
ACGTcount: A:0.12, C:0.24, G:0.46, T:0.18
Consensus pattern (22 bp):
GGTCAACGGTCGGGTCGGGTCG
Found at i:54612 original size:19 final size:19
Alignment explanation
Indices: 54590--54703 Score: 106
Period size: 19 Copynumber: 5.9 Consensus size: 19
54580 TCGGGTCGGG
*
54590 TCAGATCGGTCAAACCGAT
1 TCAGACCGGTCAAACCGAT
54609 TCAGACCGGTCAAACCGAT
1 TCAGACCGGTCAAACCGAT
*
54628 TCAGACCGGTCAAACCGGT
1 TCAGACCGGTCAAACCGAT
* *
54647 TC-GAACCGGTAGAAACCG-G
1 TCAG-ACCGGT-CAAACCGAT
* *
54666 TCAAACCGGTCAGAACCGGT
1 TCAGACCGGTCA-AACCGAT
* *
54686 TGAAAACCGGTCAAACCG
1 T-CAGACCGGTCAAACCG
54704 GTTTCCAGCA
Statistics
Matches: 81, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
18 2 0.02
19 57 0.70
20 12 0.15
21 10 0.12
ACGTcount: A:0.32, C:0.29, G:0.25, T:0.15
Consensus pattern (19 bp):
TCAGACCGGTCAAACCGAT
Found at i:54653 original size:10 final size:9
Alignment explanation
Indices: 54632--54705 Score: 58
Period size: 9 Copynumber: 7.7 Consensus size: 9
54622 ACCGATTCAG
*
54632 ACCGGTCAA
1 ACCGGTCGA
54641 ACCGGTTCGA
1 ACCGG-TCGA
*
54651 ACCGGTAGAA
1 ACCGGTCG-A
*
54661 ACCGGTCAA
1 ACCGGTCGA
54670 ACCGGTCAGA
1 ACCGGTC-GA
*
54680 ACCGGTTGAAA
1 ACCGGTCG--A
*
54691 ACCGGTCAA
1 ACCGGTCGA
54700 ACCGGT
1 ACCGGT
54706 TTCCAGCAGC
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
9 23 0.44
10 22 0.42
11 7 0.13
ACGTcount: A:0.31, C:0.28, G:0.27, T:0.14
Consensus pattern (9 bp):
ACCGGTCGA
Found at i:54655 original size:38 final size:37
Alignment explanation
Indices: 54588--54705 Score: 123
Period size: 38 Copynumber: 3.1 Consensus size: 37
54578 GGTCGGGTCG
* *
54588 GGTCAGATCGGTCAAACCGATTC-AGACCGGTCAAACC
1 GGTCAGACCGGTCAAACCGGTTCGA-ACCGGTCAAACC
* *
54625 GATTCAGACCGGTCAAACCGGTTCGAACCGGTAGAAACC
1 G-GTCAGACCGGTCAAACCGGTTCGAACCGGT-CAAACC
*
54664 GGTCAAACCGGTCAGAACCGGTT-GAAAACCGGTCAAACC
1 GGTCAGACCGGTCA-AACCGGTTCG--AACCGGTCAAACC
54703 GGT
1 GGT
54706 TTCCAGCAGC
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
37 1 0.01
38 37 0.54
39 23 0.34
40 7 0.10
ACGTcount: A:0.31, C:0.28, G:0.26, T:0.15
Consensus pattern (37 bp):
GGTCAGACCGGTCAAACCGGTTCGAACCGGTCAAACC
Found at i:54664 original size:29 final size:31
Alignment explanation
Indices: 54632--54706 Score: 120
Period size: 29 Copynumber: 2.5 Consensus size: 31
54622 ACCGATTCAG
54632 ACCGGTCAAACCGGTTC-GAACCGGTAG-AA
1 ACCGGTCAAACCGGTTCAGAACCGGTAGAAA
*
54661 ACCGGTCAAACCGG-TCAGAACCGGTTGAAA
1 ACCGGTCAAACCGGTTCAGAACCGGTAGAAA
54691 ACCGGTCAAACCGGTT
1 ACCGGTCAAACCGGTT
54707 TCCAGCAGCC
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 2 0.05
29 23 0.55
30 16 0.38
31 1 0.02
ACGTcount: A:0.31, C:0.28, G:0.27, T:0.15
Consensus pattern (31 bp):
ACCGGTCAAACCGGTTCAGAACCGGTAGAAA
Found at i:60999 original size:63 final size:63
Alignment explanation
Indices: 60896--61019 Score: 162
Period size: 63 Copynumber: 2.0 Consensus size: 63
60886 CCCTAAGGGA
* ** *
60896 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATTTCAGGGCCGTGGGGCCTACCTAAGAAC
1 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
* *
60959 ACATCTTAGGGCC-GCAGGGCCTACCCGAGAATA-ATCTCAGGGCCGCAGAGCCTACCTAAGA
1 ACATCTTAGGGCCTG-AGAGCCTACCCAAG-ATAGATCTCAGGGCCGCAGAGCCTACCTAAGA
61020 GTCACATTAG
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
62 1 0.02
63 49 0.92
64 3 0.06
ACGTcount: A:0.27, C:0.29, G:0.27, T:0.17
Consensus pattern (63 bp):
ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
Found at i:61004 original size:31 final size:32
Alignment explanation
Indices: 60896--61019 Score: 110
Period size: 31 Copynumber: 3.9 Consensus size: 32
60886 CCCTAAGGGA
* *
60896 ACATCTTAGGGCCTG-AGAGCCTACCCAAG-AT
1 ACATCTCAGGGCC-GCAGGGCCTACCCAAGAAT
* * ** * *
60927 AGATTTCAGGGCCGTGGGGCCTACCTAAGAAC
1 ACATCTCAGGGCCGCAGGGCCTACCCAAGAAT
* *
60959 ACATCTTAGGGCCGCAGGGCCTACCCGAGAAT
1 ACATCTCAGGGCCGCAGGGCCTACCCAAGAAT
* *
60991 A-ATCTCAGGGCCGCAGAGCCTACCTAAGA
1 ACATCTCAGGGCCGCAGGGCCTACCCAAGA
61020 GTCACATTAG
Statistics
Matches: 72, Mismatches: 19, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
30 1 0.01
31 45 0.62
32 26 0.36
ACGTcount: A:0.27, C:0.29, G:0.27, T:0.17
Consensus pattern (32 bp):
ACATCTCAGGGCCGCAGGGCCTACCCAAGAAT
Found at i:61915 original size:17 final size:17
Alignment explanation
Indices: 61895--61933 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
61885 GAAAGTCAAC
61895 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
61912 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
61929 GGTCA
1 GGTCA
61934 GACCGGTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (17 bp):
GGTCAACGGTCGGGTCG
Found at i:61953 original size:19 final size:19
Alignment explanation
Indices: 61935--62028 Score: 118
Period size: 19 Copynumber: 4.8 Consensus size: 19
61925 GTCGGGTCAG
* *
61935 ACCGGTCAAACCGATTCAG
1 ACCGGTCAAACCGGTTCAA
61954 ACCGGTCAAACCGGTTCAA
1 ACCGGTCAAACCGGTTCAA
*
61973 ACCGGTTGAAACCGG-TCAA
1 ACCGG-TCAAACCGGTTCAA
*
61992 ACCGGTCAGAACCGGTTGAAA
1 ACCGGTCA-AACCGGTT-CAA
62013 ACCGGTCAAACCGGTT
1 ACCGGTCAAACCGGTT
62029 TCCAGCAGCC
Statistics
Matches: 66, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
18 2 0.03
19 37 0.56
20 17 0.26
21 10 0.15
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (19 bp):
ACCGGTCAAACCGGTTCAA
Found at i:61972 original size:10 final size:9
Alignment explanation
Indices: 61929--62027 Score: 99
Period size: 9 Copynumber: 10.3 Consensus size: 9
61919 GGTCGGGTCG
*
61929 GGTCAGACC
1 GGTCAAACC
61938 GGTCAAACC
1 GGTCAAACC
* *
61947 GATTCAGACC
1 G-GTCAAACC
61957 GGTCAAACC
1 GGTCAAACC
61966 GGTTCAAACC
1 GG-TCAAACC
*
61976 GGTTGAAACC
1 GG-TCAAACC
61986 GGTCAAACC
1 GGTCAAACC
61995 GGTCAGAACC
1 GGTCA-AACC
*
62005 GGTTGAAAACC
1 GG-T-CAAACC
62016 GGTCAAACC
1 GGTCAAACC
62025 GGT
1 GGT
62028 TTCCAGCAGC
Statistics
Matches: 76, Mismatches: 9, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
9 36 0.47
10 32 0.42
11 7 0.09
12 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.15
Consensus pattern (9 bp):
GGTCAAACC
Found at i:61986 original size:29 final size:28
Alignment explanation
Indices: 61954--62028 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 28
61944 ACCGATTCAG
* *
61954 ACCGGTCAAACCGGTTCAAACCGGTTGAA
1 ACCGGTCAAACCGGTTAAAACCGG-TCAA
* * *
61983 ACCGGTCAAACCGGTCAGAACCGGTTGAAA
1 ACCGGTCAAACCGGTTAAAACCGG-T-CAA
62013 ACCGGTCAAACCGGTT
1 ACCGGTCAAACCGGTT
62029 TCCAGCAGCC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
29 23 0.57
30 17 0.43
ACGTcount: A:0.31, C:0.28, G:0.25, T:0.16
Consensus pattern (28 bp):
ACCGGTCAAACCGGTTAAAACCGGTCAA
Found at i:66026 original size:61 final size:61
Alignment explanation
Indices: 65952--66067 Score: 196
Period size: 61 Copynumber: 1.9 Consensus size: 61
65942 TGTGTCATGT
* * *
65952 CGGATCAACACTAGAGTGTAAACTTAGTGCAGGTGGTGGGCACGGCCTTATGTGCCATATC
1 CGGATCAAAACTAGAGTGTAAACTTAGTGCAGGAGGTGGGCACGACCTTATGTGCCATATC
*
66013 CGGATCAAAACTAGAGTGTAAACTTAGTGCAGGAGGTGGGCATGACCTTATGTGC
1 CGGATCAAAACTAGAGTGTAAACTTAGTGCAGGAGGTGGGCACGACCTTATGTGC
66068 AAGCACATCA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 51 1.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (61 bp):
CGGATCAAAACTAGAGTGTAAACTTAGTGCAGGAGGTGGGCACGACCTTATGTGCCATATC
Found at i:71273 original size:11 final size:11
Alignment explanation
Indices: 71257--71287 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
71247 CTACCATCCT
71257 TCAAATTTTCA
1 TCAAATTTTCA
71268 TCAAATTTTCA
1 TCAAATTTTCA
*
71279 TGAAATTTT
1 TCAAATTTT
71288 AGTCTTGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.35, C:0.13, G:0.03, T:0.48
Consensus pattern (11 bp):
TCAAATTTTCA
Found at i:72574 original size:64 final size:63
Alignment explanation
Indices: 72503--72624 Score: 172
Period size: 64 Copynumber: 1.9 Consensus size: 63
72493 TTATATGTTC
* *
72503 CCTTGGGTAGGCTTTCAAGCCCCAAGGTACTCCATTGGGTAGGCTCTTAGGCCCCAAGGTACAT
1 CCTTGGGTAGGCTCTCAAGCCCCAAGGTACTCC-TTGGGTAGGCTCTAAGGCCCCAAGGTACAT
* * * * *
72567 CCTTGGGTAGGCTCTGAGGTCCCAAGGTATTCCTTGGGTAGGCTCTAAGGCCCTAAGG
1 CCTTGGGTAGGCTCTCAAGCCCCAAGGTACTCCTTGGGTAGGCTCTAAGGCCCCAAGG
72625 CCTTCCCTTA
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
63 23 0.45
64 28 0.55
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (63 bp):
CCTTGGGTAGGCTCTCAAGCCCCAAGGTACTCCTTGGGTAGGCTCTAAGGCCCCAAGGTACAT
Found at i:72604 original size:31 final size:31
Alignment explanation
Indices: 72503--72624 Score: 145
Period size: 32 Copynumber: 3.9 Consensus size: 31
72493 TTATATGTTC
* * *
72503 CCTTGGGTAGGCTTTCAAGCCCCAAGGTACT
1 CCTTGGGTAGGCTCTCAGGCCCCAAGGTAAT
*
72534 CCATTGGGTAGGCTCTTAGGCCCCAAGGTACAT
1 CC-TTGGGTAGGCTCTCAGGCCCCAAGGTA-AT
* * *
72567 CCTTGGGTAGGCTCTGAGGTCCCAAGGTATT
1 CCTTGGGTAGGCTCTCAGGCCCCAAGGTAAT
* *
72598 CCTTGGGTAGGCTCTAAGGCCCTAAGG
1 CCTTGGGTAGGCTCTCAGGCCCCAAGG
72625 CCTTCCCTTA
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
31 27 0.34
32 49 0.62
33 3 0.04
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (31 bp):
CCTTGGGTAGGCTCTCAGGCCCCAAGGTAAT
Found at i:96328 original size:57 final size:56
Alignment explanation
Indices: 96263--96397 Score: 150
Period size: 56 Copynumber: 2.4 Consensus size: 56
96253 TTTGTGGAAG
* * *
96263 GAAATAAATTC-TTAAATTTATTTTCAT-AGAATCTAGTATGAATCTATTTTGTAAAA
1 GAAATAAA-TCGTTAAATTTATTTTCATGAGAATCAAGTATGAATCT-TTCTATAAAA
* * * *
96319 GAAATTAAATCTTTGAATTTA-TTTCTTGAGAATCAAGTATGATTCTTTCTATAAAA
1 GAAA-TAAATCGTTAAATTTATTTTCATGAGAATCAAGTATGAATCTTTCTATAAAA
96375 GAAATAAATCGTTGAAATTTATT
1 GAAATAAATCGTT-AAATTTATT
96398 ATTTGGAAGT
Statistics
Matches: 66, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
55 8 0.12
56 29 0.44
57 29 0.44
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.42
Consensus pattern (56 bp):
GAAATAAATCGTTAAATTTATTTTCATGAGAATCAAGTATGAATCTTTCTATAAAA
Done.