genome.fa.s6277.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006277.1 Hibiscus syriacus cultivar Beakdansim tig00014969_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106419

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6051--6083	16	2.0	17	88	5	50	24	0	3	72	0.98
9879--9921	16	2.7	16	100	0	86	53	0	0	46	1.00
9867--9925	13	4.2	13	75	14	55	57	0	0	42	0.98
10032--10104	15	4.9	15	72	3	76	43	8	17	30	1.78
10032--10104	30	2.5	29	88	2	110	43	8	17	30	1.78
10082--10156	20	3.8	20	89	1	116	46	6	13	33	1.69
10233--10327	26	3.8	26	76	16	101	46	3	0	50	1.17
10255--10313	22	2.6	22	84	7	66	44	3	0	52	1.17
10297--10334	19	2.0	19	90	10	60	39	0	0	60	0.97
10245--10341	48	2.0	49	82	6	117	45	2	0	52	1.12
10476--10578	28	3.6	27	76	20	95	51	1	0	46	1.12
10476--10575	29	3.5	27	77	15	87	51	2	0	47	1.12
10563--10628	18	4.0	17	68	20	59	46	0	1	51	1.10
10476--10631	54	2.8	54	74	13	133	50	1	0	47	1.13
10548--10629	23	3.4	23	68	30	64	48	1	1	48	1.17
11101--11145	23	2.0	23	95	0	81	22	22	17	37	1.94
11293--11729	239	1.8	234	88	4	662	28	19	18	33	1.95
12497--12534	18	2.1	18	90	0	58	23	18	23	34	1.96
13165--13397	55	4.3	55	84	4	267	42	18	9	30	1.82
13165--13420	109	2.3	111	83	7	301	40	18	9	31	1.82
19640--19675	15	2.3	15	95	4	63	47	13	8	30	1.73
21138--21169	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32851--32880	2	15.0	2	100	0	60	50	0	0	50	1.00
36436--36492	22	2.7	22	79	15	66	19	7	7	66	1.39
36423--36540	50	2.5	48	82	9	127	16	10	10	62	1.53
37788--37967	64	2.8	63	80	7	191	28	15	25	30	1.96
37808--37967	65	2.5	64	84	1	203	29	15	24	31	1.95
51614--51666	12	4.6	12	77	15	58	11	0	37	50	1.38
52663--52705	16	2.7	16	77	0	50	55	2	2	39	1.25
54979--55034	3	19.3	3	85	14	82	32	0	0	67	0.91
55088--55169	33	2.5	33	90	4	121	37	20	13	28	1.90
55641--55680	7	5.9	7	83	16	57	27	0	0	72	0.85
59677--59932	110	2.4	110	87	2	358	34	23	18	22	1.96
59901--60362	254	1.8	252	84	1	629	33	24	17	25	1.96
60921--60964	5	8.2	5	90	5	52	34	0	0	65	0.93
60920--60965	3	16.7	3	82	17	64	32	0	0	67	0.91
60917--60967	8	6.6	8	74	17	54	31	0	0	68	0.90
61019--61087	33	2.1	33	94	0	120	42	20	10	27	1.84
61025--61100	33	2.3	33	88	0	107	40	19	10	28	1.85
61572--61628	7	7.9	7	85	14	80	28	0	0	71	0.86
61573--61625	4	14.2	4	81	18	62	26	0	0	73	0.83
67560--67689	58	2.2	59	83	4	156	33	17	15	33	1.91
67845--67911	31	2.2	31	94	0	116	32	13	29	23	1.93
69311--69377	31	2.2	31	86	0	98	22	29	13	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78041--78106	28	2.4	28	94	0	114	42	7	21	28	1.80
81560--81592	16	2.1	16	88	11	50	18	0	12	69	1.18
85228--85281	2	27.0	2	100	0	108	50	0	0	50	1.00
88331--88363	17	1.9	18	88	11	52	39	12	9	39	1.74
90079--90184	53	2.0	53	98	0	203	31	28	16	24	1.96
91131--91172	19	2.3	18	84	11	59	33	0	0	66	0.92
91673--91752	35	2.3	35	88	0	115	45	21	0	33	1.52
91675--91768	35	2.7	35	80	6	102	44	26	0	28	1.54
91927--92206	148	1.9	143	92	4	472	35	6	10	47	1.63
92693--92824	35	3.7	35	89	3	194	29	0	28	41	1.61
94763--95225	59	7.9	59	89	0	669	31	21	11	34	1.90
95552--95605	22	2.6	20	80	11	63	24	31	14	29	1.95
95552--95769	95	2.3	95	82	4	253	28	26	16	29	1.96
100743--101018	59	4.7	59	91	0	446	31	21	11	35	1.89
100743--101017	117	2.3	117	91	1	442	31	21	11	35	1.89
102775--102849	27	2.8	26	76	15	73	66	6	4	22	1.32
104513--105112	134	4.5	132	75	7	462	30	15	22	31	1.95
104578--105123	134	4.1	135	78	2	537	30	15	23	30	1.95

Tables:   1

The End!