genome.fa.s6279.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006279.1 Hibiscus syriacus cultivar Beakdansim tig00014990_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119148

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5218--5252	18	1.9	18	100	0	70	25	34	22	17	1.96
9590--9730	64	2.2	63	80	7	151	33	18	21	26	1.97
10605--10682	18	4.3	18	87	6	113	19	15	33	32	1.93
10615--10692	18	4.3	18	82	9	52	24	15	33	26	1.95
13972--14029	20	2.6	22	89	10	84	31	20	22	25	1.98
14840--14927	18	4.9	18	87	0	122	20	23	30	25	1.98
19056--19093	13	2.9	13	88	0	58	21	13	31	34	1.91
20764--20851	30	2.9	30	85	6	115	42	7	17	32	1.78
32438--32549	3	37.7	3	89	1	172	62	0	2	34	1.09
32801--33565	113	6.8	113	90	1	1113	28	19	13	38	1.90
33972--34026	22	2.5	22	90	0	83	38	14	12	34	1.84
36714--36978	83	3.2	83	95	1	460	36	21	13	27	1.92
39209--39253	6	7.5	6	82	9	56	0	20	0	80	0.72
39209--39253	17	2.5	19	85	7	58	0	20	0	80	0.72
42519--42572	14	3.8	14	85	2	63	51	9	14	24	1.71
46464--46564	3	33.7	3	87	0	148	61	0	3	34	1.15
46948--47027	24	3.5	23	72	14	69	22	27	21	28	1.99
49683--49844	65	2.5	64	91	2	252	31	21	17	29	1.96
49683--49864	65	2.8	65	87	5	244	30	22	17	29	1.97
52883--52934	27	1.9	27	88	0	77	36	23	17	23	1.95
58464--58628	76	2.2	75	86	3	233	30	2	10	56	1.46
58753--58849	43	2.3	43	92	3	160	20	23	5	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59319--59359	21	1.9	22	90	5	66	19	4	0	75	0.98
66776--66941	76	2.2	76	90	2	253	30	2	10	56	1.47
66899--66961	19	3.2	19	75	4	54	31	0	12	55	1.37
67589--67629	21	1.9	22	90	5	66	19	4	0	75	0.98
72432--72485	21	2.6	21	96	0	99	31	12	18	37	1.89
74044--74159	24	4.8	24	88	4	162	25	16	18	40	1.90
77311--77361	24	2.1	24	100	0	102	27	3	11	56	1.52
90261--90317	9	6.7	9	82	11	75	64	0	0	35	0.93
90262--90331	26	2.8	26	77	16	67	64	1	0	34	1.03
96198--96234	19	1.9	19	100	0	74	48	16	5	29	1.68
96195--96240	19	2.4	19	88	0	65	47	19	4	28	1.68
107357--107391	2	17.5	2	100	0	70	48	0	0	51	1.00
107579--107641	23	2.7	24	85	5	83	50	17	11	20	1.76
108813--108884	20	3.6	20	100	0	144	9	25	22	43	1.83
108876--108967	22	4.4	21	73	10	82	19	17	23	39	1.92
108856--108967	41	2.7	40	87	8	152	17	18	23	40	1.91
109994--110073	41	1.9	41	85	7	108	40	25	18	16	1.91
118521--118554	15	2.3	15	89	0	50	41	0	8	50	1.34
118685--118740	15	3.7	14	72	23	51	23	32	26	17	1.97

Tables:   1

The End!