Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000628.1 Hibiscus syriacus cultivar Beakdansim tig00001221_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75248

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
530--575
18
2.6
18
96
0
83
13
52
0
34
1.40
2392--2485
21
4.6
20
68
12
57
39
22
14
23
1.91
8236--8287
20
2.6
20
84
0
68
36
15
26
21
1.93
8310--8358
19
2.4
21
80
10
57
32
14
22
30
1.93
8533--9033
54
9.3
54
90
0
759
31
17
18
32
1.94
12456--12643
46
4.1
46
85
3
238
47
13
18
20
1.82
12456--12643
91
2.1
92
85
3
254
47
13
18
20
1.82
14449--14533
23
3.8
22
76
9
91
48
4
7
40
1.51
14457--14519
21
2.9
22
81
6
67
52
4
6
36
1.48
14501--14639
38
3.6
39
81
8
176
43
5
9
42
1.58
14654--14716
25
2.7
23
77
17
67
41
1
1
55
1.19
14654--14718
28
2.3
30
84
12
93
41
1
1
55
1.18
15297--15346
20
2.5
20
100
0
100
16
12
40
32
1.84
20108--20148
3
13.0
3
90
10
64
31
0
0
68
0.90
20116--20148
16
2.1
16
100
0
66
30
0
0
69
0.88
20108--20148
19
2.2
19
100
0
82
31
0
0
68
0.90
24259--24356
39
2.5
39
94
0
169
32
27
16
23
1.96
35551--35699
74
2.0
74
97
0
280
36
8
15
39
1.78
36694--36809
60
1.9
60
84
3
153
38
12
12
36
1.81
39270--39313
20
2.2
20
84
8
54
54
0
0
45
0.99
41370--41429
30
2.0
30
93
0
102
51
5
15
28
1.63
43901--43941
20
2.0
21
85
9
57
48
4
19
26
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44384--44423
21
2.0
21
85
5
55
55
7
0
37
1.29
46763--46806
18
2.5
17
82
13
54
38
6
2
52
1.41
46768--46807
18
2.2
19
90
4
64
37
7
2
52
1.43
48302--48327
2
13.0
2
100
0
52
50
0
0
50
1.00
50132--50345
53
4.0
53
95
0
365
50
18
7
24
1.72
50336--50372
3
12.3
3
100
0
74
67
0
0
32
0.91
57452--57476
8
3.1
8
100
0
50
88
0
0
12
0.53
61192--61236
23
1.9
24
86
4
65
26
11
17
44
1.82
65596--65640
19
2.4
19
88
0
63
40
17
4
37
1.70
65605--65642
19
2.0
19
94
0
67
39
23
5
31
1.77
66100--66894
313
2.5
313
83
3
986
27
12
23
35
1.91
72519--72568
24
2.1
24
100
0
100
14
8
24
54
1.66

Tables:   1

The End!