Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006280.1 Hibiscus syriacus cultivar Beakdansim tig00014991_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 69864
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33
Found at i:1018 original size:21 final size:21
Alignment explanation
Indices: 992--1031 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
982 CTTGCATTTA
992 AATTTTTAGTAA-AATAATACT
1 AATTTTTAG-AATAATAATACT
1013 AATTTTTAGAATAATAATA
1 AATTTTTAGAATAATAATA
1032 ATGATCGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (21 bp):
AATTTTTAGAATAATAATACT
Found at i:1602 original size:17 final size:18
Alignment explanation
Indices: 1582--1617 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
1572 AAAATTGGTA
*
1582 ATTTATTA-AAAAATTAG
1 ATTTATTATAAAAAATAG
1599 ATTTATTATAAAAAATAG
1 ATTTATTATAAAAAATAG
1617 A
1 A
1618 AAGTTTAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (18 bp):
ATTTATTATAAAAAATAG
Found at i:1976 original size:19 final size:19
Alignment explanation
Indices: 1949--1985 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
1939 AATATAAAAA
*
1949 TTTGGTAACAAATTCTAAT
1 TTTGATAACAAATTCTAAT
1968 TTTGATAACAAATTCTAA
1 TTTGATAACAAATTCTAA
1986 CATGTATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.41
Consensus pattern (19 bp):
TTTGATAACAAATTCTAAT
Found at i:2337 original size:21 final size:21
Alignment explanation
Indices: 2311--2427 Score: 180
Period size: 21 Copynumber: 5.6 Consensus size: 21
2301 GTTTCCAGAT
* *
2311 TCGCAACGCGAACTTCGACTA
1 TCGCAATGCGAACTTGGACTA
* *
2332 TCGCAATGCAAACTTCGACTA
1 TCGCAATGCGAACTTGGACTA
2353 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
*
2374 TCCCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
2395 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
*
2416 TCTCAATGCGAA
1 TCGCAATGCGAA
2428 TATGTAAATC
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 89 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAACTTGGACTA
Found at i:2466 original size:21 final size:21
Alignment explanation
Indices: 2436--2620 Score: 182
Period size: 21 Copynumber: 8.9 Consensus size: 21
2426 AATATGTAAA
* **
2436 TCGCAATGCGATAGTTGAAGT
1 TCGCATTGCGATAGTCCAAGT
*
2457 TCGCATTGCGATAGTCGAAGT
1 TCGCATTGCGATAGTCCAAGT
* * *
2478 TCACGTTGCGATAGTTCAAGT
1 TCGCATTGCGATAGTCCAAGT
* *
2499 TCGCATTGCGATAGT-CGACT
1 TCGCATTGCGATAGTCCAAGT
* *
2519 ATCGCATTGCGAT-TTACATA-T
1 -TCGCATTGCGATAGTCCA-AGT
2540 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
2561 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
* * *
2582 TCGCGTTGCGATTATTCCAAAT
1 TCGCATTGCGA-TAGTCCAAGT
2604 TCG--TTGCGATAGTCCAA
1 TCGCATTGCGATAGTCCAA
2621 AATCGCAACG
Statistics
Matches: 140, Mismatches: 18, Indels: 14
0.81 0.10 0.08
Matches are distributed among these distances:
19 7 0.05
20 23 0.16
21 98 0.70
22 12 0.09
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.31
Consensus pattern (21 bp):
TCGCATTGCGATAGTCCAAGT
Found at i:2591 original size:62 final size:62
Alignment explanation
Indices: 2481--2620 Score: 178
Period size: 62 Copynumber: 2.3 Consensus size: 62
2471 TCGAAGTTCA
* * *
2481 CGTTGCGATAGTTCAAGTTCGCATTGCGATAGTCGACTATCGCATTGCGA-T-TTACATATT
1 CGTTGCGATAGTCCAAGTTCGCATTGCGATAGTCAACTATCGCATTGCGATTATTACAAATT
* * *
2541 CGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTCCAAGT-TCGCGTTGCGATTATTCCAAATT
1 CG--TTGCGATAGTCCAAGTTCGCATTGCGATAGT-CAACTATCGCATTGCGATTATTACAAATT
2605 CGTTGCGATAGTCCAA
1 CGTTGCGATAGTCCAA
2621 AATCGCAACG
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
60 2 0.03
62 54 0.78
63 4 0.06
64 9 0.13
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (62 bp):
CGTTGCGATAGTCCAAGTTCGCATTGCGATAGTCAACTATCGCATTGCGATTATTACAAATT
Found at i:2627 original size:62 final size:60
Alignment explanation
Indices: 2433--2627 Score: 176
Period size: 62 Copynumber: 3.1 Consensus size: 60
2423 GCGAATATGT
* * * * * *
2433 AAATCGCAATGCGATAGTTGAAGTTCGCATTGCGATAGTCGAAGTTCACGTTGCGATAGTTCA
1 AAATCGCATTGCGATAG-TCAAGTTCGCATTGCGATATTCCAAATT--CGTTGCGATAGTCCA
** * * * *
2496 AGTTCGCATTGCGATAGTCGACTATCGCATTGCGAT-TTACATATTCGCATTGCGATAGTCCA
1 AAATCGCATTGCGATAGTCAAGT-TCGCATTGCGATATTCCAAATTCG--TTGCGATAGTCCA
** *
2558 AGTTCGCATTGCGATAGTCCAAGTTCGCGTTGCGATTATTCCAAATTCGTTGCGATAGTCCA
1 AAATCGCATTGCGATAGT-CAAGTTCGCATTGCGA-TATTCCAAATTCGTTGCGATAGTCCA
2620 AAATCGCA
1 AAATCGCA
2628 ACGATTGGTG
Statistics
Matches: 107, Mismatches: 19, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
60 2 0.02
62 66 0.62
63 30 0.28
64 9 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (60 bp):
AAATCGCATTGCGATAGTCAAGTTCGCATTGCGATATTCCAAATTCGTTGCGATAGTCCA
Found at i:2627 original size:83 final size:82
Alignment explanation
Indices: 2457--2627 Score: 184
Period size: 83 Copynumber: 2.1 Consensus size: 82
2447 TAGTTGAAGT
* * * * *
2457 TCGCATTGCGATAGTCGAAGTTCACGTTGCGATAGTTCAAGTTCGCATTGCGATAGTCGACTATC
1 TCGCATTGCGATAGTCCAAGTTCACATTGCGATAGTCCAAGTTCGCATTGCGATAGTCAAATATC
* * *
2522 GCATTGCGATTTACATAT
66 G-ATTGCGATGTACAAAA
* * *
2540 TCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTCCAAGTTCGCGTTGCGATTATTCCAAAT-
1 TCGCATTGCGATAGTCCAAGTTCACATTGCGATAGTCCAAGTTCGCATTGCGA-TAGT-CAAATA
*
2604 TCG-TTGCGATAGTCCAAAA
64 TCGATTGCGAT-GTACAAAA
2623 TCGCA
1 TCGCA
2628 ACGATTGGTG
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
82 7 0.10
83 57 0.78
84 6 0.08
85 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (82 bp):
TCGCATTGCGATAGTCCAAGTTCACATTGCGATAGTCCAAGTTCGCATTGCGATAGTCAAATATC
GATTGCGATGTACAAAA
Found at i:2721 original size:6 final size:6
Alignment explanation
Indices: 2710--2750 Score: 54
Period size: 5 Copynumber: 7.5 Consensus size: 6
2700 GACACGTATT
2710 ACCACG ACCACG ACCACG ACCA-G ACC-CG ACC-CG ACC-CG ACC
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACC
2751 CGAGACGAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
5 18 0.53
6 16 0.47
ACGTcount: A:0.29, C:0.54, G:0.17, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:3263 original size:6 final size:6
Alignment explanation
Indices: 3252--3292 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
3242 GTCTCATCTC
* * *
3252 GGGTCG GGGTCG GGGTCG GGGTCG TGGTCG TGGTCG TGGTC
1 GGGTCG GGGTCG GGGTCG GGGTCG GGGTCG GGGTCG GGGTC
3293 ATGGTAATAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.00, C:0.17, G:0.59, T:0.24
Consensus pattern (6 bp):
GGGTCG
Found at i:3297 original size:6 final size:6
Alignment explanation
Indices: 3253--3297 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
3243 TCTCATCTCG
* * * *
3253 GGTCGG GGTCGG GGTCGG GGTCGT GGTCGT GGTCGT GGTCAT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
3298 AATACGTGTC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.02, C:0.16, G:0.56, T:0.27
Consensus pattern (6 bp):
GGTCGT
Found at i:3439 original size:21 final size:21
Alignment explanation
Indices: 3387--3551 Score: 133
Period size: 21 Copynumber: 7.9 Consensus size: 21
3377 CGTTGCGATT
*
3387 TTGGACTATCGCAA--CGAAT
1 TTGGACTATCGCAATGCGAAC
*
3406 TTGGAATAAATCGCAATGCGAAC
1 TTGGACT--ATCGCAATGCGAAC
3429 TTGGACTATCGCAATGCGAA-
1 TTGGACTATCGCAATGCGAAC
* *
3449 TATGTA-AATCGCAATGCGATA-
1 T-TGGACTATCGCAATGCGA-AC
* * *
3470 GTCGACTATTGCAATGCGAAC
1 TTGGACTATCGCAATGCGAAC
* *
3491 TTGGACTATCGCAACGCAAAC
1 TTGGACTATCGCAATGCGAAC
* **
3512 TTCGACTATCGCAATGAAAAC
1 TTGGACTATCGCAATGCGAAC
* *
3533 TTCGACTATCGCATTGCGA
1 TTGGACTATCGCAATGCGA
3552 TTTACATATT
Statistics
Matches: 117, Mismatches: 21, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
19 6 0.05
20 16 0.14
21 85 0.73
23 10 0.09
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.25
Consensus pattern (21 bp):
TTGGACTATCGCAATGCGAAC
Found at i:3439 original size:42 final size:40
Alignment explanation
Indices: 3387--3467 Score: 110
Period size: 41 Copynumber: 1.9 Consensus size: 40
3377 CGTTGCGATT
*
3387 TTGGACTATCGCAA-CGAATTTGGAATAAATCGCAATGCGAAC
1 TTGGACTATCGCAAGCGAATAT-G--TAAATCGCAATGCGAAC
3429 TTGGACTATCGCAATGCGAATATGTAAATCGCAATGCGA
1 TTGGACTATCGCAA-GCGAATATGTAAATCGCAATGCGA
3468 TAGTCGACTA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
41 15 0.42
42 14 0.39
43 1 0.03
44 6 0.17
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.25
Consensus pattern (40 bp):
TTGGACTATCGCAAGCGAATATGTAAATCGCAATGCGAAC
Found at i:3477 original size:41 final size:41
Alignment explanation
Indices: 3412--3527 Score: 119
Period size: 41 Copynumber: 2.8 Consensus size: 41
3402 GAATTTGGAA
* *
3412 TAAATCGCAATGCGAACTTGGACTATCGCAATGCGAATATG
1 TAAATCGCAATGCGAACGTCGACTATCGCAATGCGAATATG
*
3453 TAAATCGCAATGCGATA-GTCGACTATTGCAATGCGAACT-TG
1 TAAATCGCAATGCGA-ACGTCGACTATCGCAATGCGAA-TATG
* * * * *
3494 GACTATCGCAACGCAAACTTCGACTATCGCAATG
1 TA-AATCGCAATGCGAACGTCGACTATCGCAATG
3528 AAAACTTCGA
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
41 36 0.58
42 26 0.42
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (41 bp):
TAAATCGCAATGCGAACGTCGACTATCGCAATGCGAATATG
Found at i:3587 original size:21 final size:19
Alignment explanation
Indices: 3533--3594 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 19
3523 CAATGAAAAC
3533 TTCGACTATCGCATTGCGA
1 TTCGACTATCGCATTGCGA
*
3552 TT-TACATATTCGCATTGCGA
1 TTCGAC-TA-TCGCATTGCGA
3572 TAGTCGACTATCGCATTGCGA
1 T--TCGACTATCGCATTGCGA
3593 TT
1 TT
3595 TTGGAATAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
18 2 0.06
19 5 0.14
20 12 0.33
21 12 0.33
22 3 0.08
23 2 0.06
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (19 bp):
TTCGACTATCGCATTGCGA
Found at i:3599 original size:104 final size:103
Alignment explanation
Indices: 3379--3599 Score: 252
Period size: 104 Copynumber: 2.1 Consensus size: 103
3369 CCACCAGTCG
* * ** *
3379 TTGCGATTTTGGACTATCGCAACGAATTTGGAATAAATCGCAATGCGAACTTGGACTATCGCAAT
1 TTGCGATTTTGGACTATCGCAACGAACTTCGAAT-AATCGCAATGAAAACTTCGACTATCGCAAT
*
3444 GCGAATATGTAAATCGCAATGCGATAGTCGACTATTGCA
65 GCGAATATGTAAATCGCAATGCGATAGTCGACTATCGCA
* ** * *
3483 ATGCGAACTTGGACTATCGCAACGCAAACTTCGACT-ATCGCAATGAAAACTTCGACTATCGCAT
1 TTGCGATTTTGGACTATCGCAACG--AACTTCGAATAATCGCAATGAAAACTTCGACTATCGCAA
*
3547 TGCG-AT-T-TACATATTCGCATTGCGATAGTCGACTATCGCA
64 TGCGAATATGTA-A-A-TCGCAATGCGATAGTCGACTATCGCA
3587 TTGCGATTTTGGA
1 TTGCGATTTTGGA
3600 ATAAATTCTT
Statistics
Matches: 97, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
101 2 0.02
102 2 0.02
103 3 0.03
104 83 0.86
106 7 0.07
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (103 bp):
TTGCGATTTTGGACTATCGCAACGAACTTCGAATAATCGCAATGAAAACTTCGACTATCGCAATG
CGAATATGTAAATCGCAATGCGATAGTCGACTATCGCA
Found at i:3763 original size:21 final size:21
Alignment explanation
Indices: 3739--3867 Score: 147
Period size: 21 Copynumber: 6.2 Consensus size: 21
3729 TTTGGAATAA
3739 ATCGCAATGCGAACTTGGACT
1 ATCGCAATGCGAACTTGGACT
* *
3760 ATCGCAATGCGAA-TATGTA-A
1 ATCGCAATGCGAACT-TGGACT
* *
3780 ATCGCAATGCGATA-GTCGACT
1 ATCGCAATGCGA-ACTTGGACT
3801 ATCGCAATGCGAACTTGGACT
1 ATCGCAATGCGAACTTGGACT
* * *
3822 ATCACAACGCGAACTTTGACT
1 ATCGCAATGCGAACTTGGACT
*
3843 ATCGCAATGCGAACTTCGACT
1 ATCGCAATGCGAACTTGGACT
3864 ATCG
1 ATCG
3868 TATTGCGATT
Statistics
Matches: 90, Mismatches: 14, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
20 16 0.18
21 74 0.82
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (21 bp):
ATCGCAATGCGAACTTGGACT
Found at i:3801 original size:41 final size:41
Alignment explanation
Indices: 3736--3855 Score: 127
Period size: 41 Copynumber: 2.9 Consensus size: 41
3726 CAATTTGGAA
* *
3736 TAAATCGCAATGCGAACTTGGACTATCGCAATGCGAATATG
1 TAAATCGCAATGCGAACGTCGACTATCGCAATGCGAATATG
3777 TAAATCGCAATGCGATA-GTCGACTATCGCAATGCGAACT-TG
1 TAAATCGCAATGCGA-ACGTCGACTATCGCAATGCGAA-TATG
* * * * * *
3818 GACTATCACAACGCGAACTTTGACTATCGCAATGCGAA
1 TA-AATCGCAATGCGAACGTCGACTATCGCAATGCGAA
3856 CTTCGACTAT
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
41 37 0.55
42 30 0.45
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (41 bp):
TAAATCGCAATGCGAACGTCGACTATCGCAATGCGAATATG
Found at i:3894 original size:20 final size:20
Alignment explanation
Indices: 3869--3937 Score: 79
Period size: 20 Copynumber: 3.4 Consensus size: 20
3859 CGACTATCGT
3869 ATTGCGATTTACATATTCGC
1 ATTGCGATTTACATATTCGC
*
3889 ATTGCGATAGT-CGACTA-TCGC
1 ATTGCGAT-TTAC-A-TATTCGC
*
3910 ATTGTGATTTACATATTCGC
1 ATTGCGATTTACATATTCGC
3930 ATTGCGAT
1 ATTGCGAT
3938 AGTCCAAGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
19 2 0.05
20 22 0.55
21 14 0.35
22 2 0.05
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (20 bp):
ATTGCGATTTACATATTCGC
Found at i:3903 original size:41 final size:41
Alignment explanation
Indices: 3858--3999 Score: 155
Period size: 41 Copynumber: 3.4 Consensus size: 41
3848 AATGCGAACT
*
3858 TCGACTATCGTATTGCGATTTACATATTCGCATTGCGATAG
1 TCGACTATCGCATTGCGATTTACATATTCGCATTGCGATAG
*
3899 TCGACTATCGCATTGTGATTTACATATTCGCATTGCGATAG
1 TCGACTATCGCATTGCGATTTACATATTCGCATTGCGATAG
* * * * *
3940 TCCAAGT-TCGCATTGCGATAGTCCA-AGTTCGCATTACGATAG
1 T-CGACTATCGCATTGCGAT-TTACATA-TTCGCATTGCGATAG
*
3982 TCGAAGT-TCGCATTGCGA
1 TCG-ACTATCGCATTGCGA
4000 ATCTGGAAAC
Statistics
Matches: 88, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
41 53 0.60
42 35 0.40
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (41 bp):
TCGACTATCGCATTGCGATTTACATATTCGCATTGCGATAG
Found at i:3911 original size:21 final size:21
Alignment explanation
Indices: 3780--3999 Score: 77
Period size: 21 Copynumber: 10.6 Consensus size: 21
3770 GAATATGTAA
*
3780 ATCGCAATGCGATAGTCGACT
1 ATCGCATTGCGATAGTCGACT
* * *
3801 ATCGCAATGCGA-ACTTGGACT
1 ATCGCATTGCGATA-GTCGACT
* ** * *
3822 ATCACAACGCGA-ACTTTGACT
1 ATCGCATTGCGATA-GTCGACT
* *
3843 ATCGCAATGCGA-ACTTCGACT
1 ATCGCATTGCGATA-GTCGACT
* *
3864 ATCGTATTGCGAT--T-TACAT
1 ATCGCATTGCGATAGTCGAC-T
3883 ATTCGCATTGCGATAGTCGACT
1 A-TCGCATTGCGATAGTCGACT
* *
3905 ATCGCATTGTGAT--T-TACAT
1 ATCGCATTGCGATAGTCGAC-T
* *
3924 ATTCGCATTGCGATAGTCCAAGT
1 A-TCGCATTGCGATAGT-CGACT
* *
3947 -TCGCATTGCGATAGTCCAAGT
1 ATCGCATTGCGATAGT-CGACT
* *
3968 -TCGCATTACGATAGTCGAAGT
1 ATCGCATTGCGATAGTCG-ACT
3989 -TCGCATTGCGA
1 ATCGCATTGCGA
4000 ATCTGGAAAC
Statistics
Matches: 164, Mismatches: 21, Indels: 28
0.77 0.10 0.13
Matches are distributed among these distances:
18 4 0.02
19 6 0.04
20 24 0.15
21 122 0.74
22 4 0.02
23 3 0.02
24 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (21 bp):
ATCGCATTGCGATAGTCGACT
Found at i:6407 original size:13 final size:13
Alignment explanation
Indices: 6391--6416 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6381 CTAGTTTTGT
6391 TGTTTTTATATTA
1 TGTTTTTATATTA
6404 TGTTTTTATATTA
1 TGTTTTTATATTA
6417 AGGATTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (13 bp):
TGTTTTTATATTA
Found at i:8710 original size:23 final size:23
Alignment explanation
Indices: 8673--8735 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
8663 AAACATAATT
8673 CAGGTCAAGTATCATATCAGAATC
1 CAGGTC-AGTATCATATCAGAATC
*
8697 CATGTCAGTATCATATCAGAATC
1 CAGGTCAGTATCATATCAGAATC
*
8720 CGGGTCAGGTATCATA
1 CAGGTCA-GTATCATA
8736 ACAAAATTCA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
23 22 0.63
24 13 0.37
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (23 bp):
CAGGTCAGTATCATATCAGAATC
Found at i:9183 original size:23 final size:23
Alignment explanation
Indices: 9110--9205 Score: 120
Period size: 24 Copynumber: 4.0 Consensus size: 23
9100 TTATCCATAG
*
9110 ATCAGAATTCAGGTCAAGTATCAT
1 ATCAGAATCCAGGTC-AGTATCAT
*
9134 ATCAGAATCAAGGTCATGTATCAT
1 ATCAGAATCCAGGTCA-GTATCAT
* *
9158 ATCAGAATCCATGTCAGCATCAT
1 ATCAGAATCCAGGTCAGTATCAT
*
9181 ATCAAAATCCAGGTCAGGTATCAT
1 ATCAGAATCCAGGTCA-GTATCAT
9205 A
1 A
9206 ACAAAATTCA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
23 21 0.34
24 41 0.66
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.27
Consensus pattern (23 bp):
ATCAGAATCCAGGTCAGTATCAT
Found at i:9183 original size:47 final size:48
Alignment explanation
Indices: 9110--9205 Score: 131
Period size: 47 Copynumber: 2.0 Consensus size: 48
9100 TTATCCATAG
* * * *
9110 ATCAGAATTCAGGTCAAGTATCATATCAGAATCAAGGTCATGTATCAT
1 ATCAGAATCCAGGTCAAGCATCATATCAAAATCAAGGTCAGGTATCAT
* *
9158 ATCAGAATCCATGTC-AGCATCATATCAAAATCCAGGTCAGGTATCAT
1 ATCAGAATCCAGGTCAAGCATCATATCAAAATCAAGGTCAGGTATCAT
9205 A
1 A
9206 ACAAAATTCA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
47 29 0.69
48 13 0.31
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.27
Consensus pattern (48 bp):
ATCAGAATCCAGGTCAAGCATCATATCAAAATCAAGGTCAGGTATCAT
Found at i:9561 original size:470 final size:470
Alignment explanation
Indices: 8674--9583 Score: 1649
Period size: 470 Copynumber: 1.9 Consensus size: 470
8664 AACATAATTC
* * *
8674 AGGTCAAGTATCATATCAGAATCCATGTCAGTATCATATCAGAATCCGGGTCAGGTATCATAACA
1 AGGTCAAGTATCATATCAGAATCCATGTCAGCATCATATCAAAATCCAGGTCAGGTATCATAACA
8739 AAATTCAAATCGAAAATCAGTTAAAATATTCATGTGATTAGGGAACACACCAGACTTTACAGATA
66 AAATTCAAATCGAAAATCAGTTAAAATATTCATGTGATTAGGGAACACACCAGACTTTACAGATA
8804 TTACTCAGAGGTACTGGATAATCTTAACAGACATAGAAACACGGATCTTCAGTATACTGATAAAA
131 TTACTCAGAGGTACTGGATAATCTTAACAGACATAGAAACACGGATCTTCAGTATACTGATAAAA
* *
8869 TGTCAGAATTTTGAATCACTATAGGAAGAGTTCAATAACTAATGGAATCATCAATTATTTAGAAT
196 TGTCAGAATTTAGAATCACTATAGGAAGAGTTCAATAACTAATGGAATCATCAATTATTCAGAAT
* *
8934 ATGACTTCAGTTGATAAGGAAGAAATGAAGGTTCAGGTCATTTACAGTCTATGTCGATTGATTTC
261 ATGACTTCAGCTGATAAGGAAGAAATAAAGGTTCAGGTCATTTACAGTCTATGTCGATTGATTTC
* *
8999 ATTATCAAACAACTCCAGATGAATATCTCCCAGAATTAATGCTTGTCGATTTGTAAATTCATTGT
326 ATTATCAAACAAATCCAGATGAATATCTCCCAGAATTAATGCTTGTCGATTGGTAAATTCATTGT
*
9064 CCTTCTAGGGAATTTACTTTTTAATACCAAAAATTCTTATCCATAGATCAGAATTCAGGTCAAGT
391 CCTTCCAGGGAATTTACTTTTTAATACCAAAAATTCTTATCCATAGATCAGAATTCAGGTCAAGT
9129 ATCATATCAGAATCA
456 ATCATATCAGAATCA
*
9144 AGGTCATGTATCATATCAGAATCCATGTCAGCATCATATCAAAATCCAGGTCAGGTATCATAACA
1 AGGTCAAGTATCATATCAGAATCCATGTCAGCATCATATCAAAATCCAGGTCAGGTATCATAACA
*
9209 AAATTCAAATCGGAAATCAGTTAAAATATTCATGTGATTAGGGAACACACCAGACTTTACAGATA
66 AAATTCAAATCGAAAATCAGTTAAAATATTCATGTGATTAGGGAACACACCAGACTTTACAGATA
* * *
9274 TTATTCAGAGGTACTGGATAATCTTAACAGGCATAGAAACACGGATCTTTAGTATACTGATAAAA
131 TTACTCAGAGGTACTGGATAATCTTAACAGACATAGAAACACGGATCTTCAGTATACTGATAAAA
9339 TGTCAGAATTTAGAATCACTATAGGAAGAGTTCAATAACTAATGGAATCATCAATTATTCAGAAT
196 TGTCAGAATTTAGAATCACTATAGGAAGAGTTCAATAACTAATGGAATCATCAATTATTCAGAAT
*
9404 ATGACTTGAGCTGATAAGGAAGAAATAAAGGTTCAGGTCATTTACAGTCTATGTCGATTGATTTC
261 ATGACTTCAGCTGATAAGGAAGAAATAAAGGTTCAGGTCATTTACAGTCTATGTCGATTGATTTC
* *
9469 ATTGTCAAACAAATCCAGATGAATATCTCCCTGAATTAATGCTTGTCGATTGGTAAATTCATTGT
326 ATTATCAAACAAATCCAGATGAATATCTCCCAGAATTAATGCTTGTCGATTGGTAAATTCATTGT
*
9534 CCTTCCAGGGTATTTACTTTTTAATACCAAAAATTCTTATCCATAGATCA
391 CCTTCCAGGGAATTTACTTTTTAATACCAAAAATTCTTATCCATAGATCA
9584 TTTTTGGAAT
Statistics
Matches: 421, Mismatches: 19, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
470 421 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (470 bp):
AGGTCAAGTATCATATCAGAATCCATGTCAGCATCATATCAAAATCCAGGTCAGGTATCATAACA
AAATTCAAATCGAAAATCAGTTAAAATATTCATGTGATTAGGGAACACACCAGACTTTACAGATA
TTACTCAGAGGTACTGGATAATCTTAACAGACATAGAAACACGGATCTTCAGTATACTGATAAAA
TGTCAGAATTTAGAATCACTATAGGAAGAGTTCAATAACTAATGGAATCATCAATTATTCAGAAT
ATGACTTCAGCTGATAAGGAAGAAATAAAGGTTCAGGTCATTTACAGTCTATGTCGATTGATTTC
ATTATCAAACAAATCCAGATGAATATCTCCCAGAATTAATGCTTGTCGATTGGTAAATTCATTGT
CCTTCCAGGGAATTTACTTTTTAATACCAAAAATTCTTATCCATAGATCAGAATTCAGGTCAAGT
ATCATATCAGAATCA
Found at i:11489 original size:10 final size:10
Alignment explanation
Indices: 11474--11511 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
11464 GTAAAAGTTT
11474 TGGTCAACGG
1 TGGTCAACGG
11484 TGGTCAAC-G
1 TGGTCAACGG
11493 TCGGTCAACGG
1 T-GGTCAACGG
11504 -GGTCAACG
1 TGGTCAACG
11512 CCGCTCAACG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 10 0.38
10 15 0.58
11 1 0.04
ACGTcount: A:0.21, C:0.24, G:0.37, T:0.18
Consensus pattern (10 bp):
TGGTCAACGG
Found at i:11509 original size:19 final size:19
Alignment explanation
Indices: 11475--11523 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
11465 TAAAAGTTTT
*
11475 GGTCAACGGTGGTCAACGTC
1 GGTCAACGG-GGTCAACGCC
11495 GGTCAACGGGGTCAACGCC
1 GGTCAACGGGGTCAACGCC
*
11514 GCTCAACGGG
1 GGTCAACGGG
11524 TCGGGTCAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 18 0.67
20 9 0.33
ACGTcount: A:0.20, C:0.29, G:0.37, T:0.14
Consensus pattern (19 bp):
GGTCAACGGGGTCAACGCC
Found at i:16138 original size:224 final size:226
Alignment explanation
Indices: 15739--16190 Score: 728
Period size: 224 Copynumber: 2.0 Consensus size: 226
15729 AACCCAAATC
*
15739 CCACGTGCCTTGTATTATTTTCAAACCACAACTCACTTCATTTTTTTTCCCAATCGAAACCTAGC
1 CCACGTGCCTTGTATTATTTTCAAAACACAACTCACTTCA-TTTTTTTCCCAATCGAAACCTAGC
* * *
15804 CTCATATTCTATATTTTTTCTTTCTTCCATAAGCTGCACACTATTCTCACCATTGAACATAGCCA
65 CTCATATTCTATATTTTTTCTTTCTTCCACAAACTGCACACTATTCTCACCATTGAACATAACCA
* * * *
15869 TCGTCCAAACCCATCACCTCTTCTCGACTCTTACACAAGCATCATGGTTTACACAAAACTTTTGA
130 TCGTCCAAACCCATCACCTCTTCTCGACTCCTACACAACCATCATGGTTCACACAAAACGTTTGA
*
15934 ACCGAGCTACCCTGTGCCCATCAGTCTCACCA
195 ACCGAGCTACCCTCTGCCCATCAGTCTCACCA
* *
15966 CCACGTGCCTTGTATTATTTTCAAAACGCAACTCACTTCA-TTTTTT-CCAATCGAAACCTAGTC
1 CCACGTGCCTTGTATTATTTTCAAAACACAACTCACTTCATTTTTTTCCCAATCGAAACCTAGCC
* * * *
16029 TCATATTTTATATTTTTTCTTTCTTTCACAAACTGCACATTATTCTGACCATTGAACATAACCAT
66 TCATATTCTATATTTTTTCTTTCTTCCACAAACTGCACACTATTCTCACCATTGAACATAACCAT
16094 CGTCCAAACCCATCACCTCTTCTCGACTCCTACACAACCATCATGGTTCACACAAAACGTTTGAA
131 CGTCCAAACCCATCACCTCTTCTCGACTCCTACACAACCATCATGGTTCACACAAAACGTTTGAA
* *
16159 TCGAGCTACCCTCTGCCCATCGGTCTCACCA
196 CCGAGCTACCCTCTGCCCATCAGTCTCACCA
16190 C
1 C
16191 ATCGTGACCG
Statistics
Matches: 208, Mismatches: 17, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
224 164 0.79
225 6 0.03
227 38 0.18
ACGTcount: A:0.27, C:0.32, G:0.09, T:0.33
Consensus pattern (226 bp):
CCACGTGCCTTGTATTATTTTCAAAACACAACTCACTTCATTTTTTTCCCAATCGAAACCTAGCC
TCATATTCTATATTTTTTCTTTCTTCCACAAACTGCACACTATTCTCACCATTGAACATAACCAT
CGTCCAAACCCATCACCTCTTCTCGACTCCTACACAACCATCATGGTTCACACAAAACGTTTGAA
CCGAGCTACCCTCTGCCCATCAGTCTCACCA
Found at i:19447 original size:14 final size:14
Alignment explanation
Indices: 19428--19474 Score: 76
Period size: 14 Copynumber: 3.4 Consensus size: 14
19418 AGGGTATGTT
19428 TGTTTGGAGTAAAA
1 TGTTTGGAGTAAAA
19442 TGTTTGGAGTAAAA
1 TGTTTGGAGTAAAA
* *
19456 TGTTTAGAGAAAAA
1 TGTTTGGAGTAAAA
19470 TGTTT
1 TGTTT
19475 TACAGAAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.36, C:0.00, G:0.26, T:0.38
Consensus pattern (14 bp):
TGTTTGGAGTAAAA
Found at i:21954 original size:11 final size:11
Alignment explanation
Indices: 21938--21971 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
21928 GCATAAAACC
21938 AAATATAAATA
1 AAATATAAATA
21949 AAATATAAATA
1 AAATATAAATA
*
21960 AAA-AAAAATA
1 AAATATAAATA
21970 AA
1 AA
21972 GAAGATAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 8 0.36
11 14 0.64
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (11 bp):
AAATATAAATA
Found at i:22034 original size:19 final size:18
Alignment explanation
Indices: 21944--22034 Score: 52
Period size: 18 Copynumber: 5.3 Consensus size: 18
21934 AACCAAATAT
*
21944 AAATAAAATATAAATA-A
1 AAATAAAATAAAAATAGA
*
21961 AAA-AAAATAAAGA-AGA
1 AAATAAAATAAAAATAGA
* *
21977 TAATAACAATAACAAT---
1 AAATAA-AATAAAAATAGA
*
21993 ACA-AAAATAAAAATAGA
1 AAATAAAATAAAAATAGA
* *
22010 AGATAAAATAAAATATATA
1 AAATAAAATAAAA-ATAGA
22029 AAATAA
1 AAATAA
22035 TAAATATATC
Statistics
Matches: 54, Mismatches: 11, Indels: 16
0.67 0.14 0.20
Matches are distributed among these distances:
14 8 0.15
15 3 0.06
16 12 0.22
17 7 0.13
18 15 0.28
19 9 0.17
ACGTcount: A:0.74, C:0.03, G:0.04, T:0.19
Consensus pattern (18 bp):
AAATAAAATAAAAATAGA
Found at i:22041 original size:16 final size:16
Alignment explanation
Indices: 22012--22085 Score: 52
Period size: 16 Copynumber: 4.8 Consensus size: 16
22002 AAAATAGAAG
22012 ATAAAAT-A-AAATAT
1 ATAAAATAATAAATAT
22026 ATAAAATAATAAATAT
1 ATAAAATAATAAATAT
*
22042 ATCTAACAT-AT-AATA-
1 A--TAAAATAATAAATAT
*
22057 ATAGTAATAA-AAATAT
1 ATA-AAATAATAAATAT
22073 ATAAAAATAATAA
1 AT-AAAATAATAA
22086 TGATAGATGA
Statistics
Matches: 46, Mismatches: 4, Indels: 17
0.69 0.06 0.25
Matches are distributed among these distances:
13 2 0.04
14 9 0.20
15 7 0.15
16 18 0.39
17 5 0.11
18 5 0.11
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (16 bp):
ATAAAATAATAAATAT
Found at i:22767 original size:37 final size:37
Alignment explanation
Indices: 22712--22812 Score: 141
Period size: 37 Copynumber: 2.7 Consensus size: 37
22702 CTTGTGGATT
* **
22712 CTATCTTTAGGAGTTTGAATCCTAGTATGA-CTCTATC
1 CTATTTTTAGGAGTTTGAATCCTAGTAAAATC-CTATC
*
22749 CTATTTTTAGGAGTTTGAATCCTAATAAAATCCTATC
1 CTATTTTTAGGAGTTTGAATCCTAGTAAAATCCTATC
*
22786 ATATTTTTAGGAGTTTGAATCCTAGTA
1 CTATTTTTAGGAGTTTGAATCCTAGTA
22813 GGACAAAAAG
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
37 56 0.98
38 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.42
Consensus pattern (37 bp):
CTATTTTTAGGAGTTTGAATCCTAGTAAAATCCTATC
Found at i:23658 original size:106 final size:106
Alignment explanation
Indices: 23473--23901 Score: 700
Period size: 106 Copynumber: 4.0 Consensus size: 106
23463 TGTATTATTC
*
23473 CGAGTCCAATATCC-TCTG-TCGTAAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTTGTTGA
1 CGAGTCCAATATCCTTC-GCT-GTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTTGTTGA
*
23536 CAACTAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
64 CAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * *
23579 CGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTGTTGACA
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTTGTTGACA
23644 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
66 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* *
23685 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACA
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTTGTTGACA
* *
23750 ACCAGTCGTCCCTTCGTTGTGAAGTTTAACTTGTGTTGTCT
66 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * *
23791 CGAGTCCAATATCATTCGCTGTGAAGTTGAAATTGGTTCTGAAACTGAGAAATTGTTTGTTGACA
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTTGTTGACA
* *
23856 ACCATCCGTCACTTCGTTGTGAAGTTGAACTTGTGTTGTCT
66 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
23897 CGAGT
1 CGAGT
23902 GGCACGATAT
Statistics
Matches: 303, Mismatches: 18, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
106 300 0.99
107 3 0.01
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (106 bp):
CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTTGTTGACA
ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
Found at i:25814 original size:15 final size:17
Alignment explanation
Indices: 25796--25846 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 17
25786 TTTTTTTTAT
25796 TTTTGCTCTT-TTTC-C
1 TTTTGCTCTTGTTTCTC
*
25811 TTTTGTTCTTGTTTCTC
1 TTTTGCTCTTGTTTCTC
* *
25828 TTTTTCT-TTGTTTTTC
1 TTTTGCTCTTGTTTCTC
25844 TTT
1 TTT
25847 GCTTTTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 9 0.30
16 15 0.50
17 6 0.20
ACGTcount: A:0.00, C:0.18, G:0.08, T:0.75
Consensus pattern (17 bp):
TTTTGCTCTTGTTTCTC
Found at i:25853 original size:22 final size:25
Alignment explanation
Indices: 25797--25855 Score: 70
Period size: 22 Copynumber: 2.5 Consensus size: 25
25787 TTTTTTTATT
*
25797 TTTGCTCTTTTTCCTTTTGTTCTTG
1 TTTGCTCTTTTTCCTTTTGTTCTTC
*
25822 TTT-CTCTTTTT-C-TTTGTTTTTC
1 TTTGCTCTTTTTCCTTTTGTTCTTC
*
25844 TTTGCTTTTTTT
1 TTTGCTCTTTTT
25856 TGCTTTTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 11 0.37
23 8 0.27
24 8 0.27
25 3 0.10
ACGTcount: A:0.00, C:0.17, G:0.08, T:0.75
Consensus pattern (25 bp):
TTTGCTCTTTTTCCTTTTGTTCTTC
Found at i:25864 original size:10 final size:11
Alignment explanation
Indices: 25827--25863 Score: 60
Period size: 10 Copynumber: 3.5 Consensus size: 11
25817 TCTTGTTTCT
25827 CTTTTTCTTTG
1 CTTTTTCTTTG
25838 -TTTTTCTTTG
1 CTTTTTCTTTG
25848 CTTTTT-TTTG
1 CTTTTTCTTTG
25858 CTTTTT
1 CTTTTT
25864 TAATATTTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 20 0.80
11 5 0.20
ACGTcount: A:0.00, C:0.14, G:0.08, T:0.78
Consensus pattern (11 bp):
CTTTTTCTTTG
Found at i:28053 original size:21 final size:21
Alignment explanation
Indices: 28027--28100 Score: 114
Period size: 21 Copynumber: 3.5 Consensus size: 21
28017 ATTATTACTA
28027 TCGCAATGCGATTTTCCAATT
1 TCGCAATGCGATTTTCCAATT
28048 TCGCAATGCGATTTTCCAATT
1 TCGCAATGCGATTTTCCAATT
* *
28069 TCGCATTGAGATTTTTCCAA-T
1 TCGCAATGCGA-TTTTCCAATT
28090 TCGCAATGCGA
1 TCGCAATGCGA
28101 ATAAGTAAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
21 40 0.83
22 8 0.17
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.36
Consensus pattern (21 bp):
TCGCAATGCGATTTTCCAATT
Found at i:28059 original size:41 final size:41
Alignment explanation
Indices: 27998--28222 Score: 140
Period size: 41 Copynumber: 5.5 Consensus size: 41
27988 CGCAAATCAG
* *
27998 TTTCCAGATTCGCAACGCGATTATTACTATCGCAATGCGAT
1 TTTCCAAATTCGCAATGCGATTATTACTATCGCAATGCGAT
* * * * *
28039 TTTCCAATTTCGCAATGCGATT-TTCCAATTTCGCATTGAGATT
1 TTTCCAAATTCGCAATGCGATTATT--ACTATCGCAATGCGA-T
* * * *
28082 TTTCC-AATTCGCAATGCGAATAAGTA-AATCGCAATGCGAA
1 TTTCCAAATTCGCAATGCG-ATTATTACTATCGCAATGCGAT
** * *
28122 TTTGGAAAATCGCAATGCGA-TACTGACTATCGCAATGCGAT
1 TTTCCAAATTCGCAATGCGATTA-TTACTATCGCAATGCGAT
** * * * **
28163 AATACAAAATCGCAATGCGA-T-TTACGTTTCGCGTTGCGAT
1 TTTCCAAATTCGCAATGCGATTATTAC-TATCGCAATGCGAT
28203 TTT-CATAATTCGCAATGCGA
1 TTTCCA-AATTCGCAATGCGA
28223 ATACGTAAAT
Statistics
Matches: 140, Mismatches: 34, Indels: 21
0.72 0.17 0.11
Matches are distributed among these distances:
39 6 0.04
40 32 0.23
41 69 0.49
42 24 0.17
43 8 0.06
44 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (41 bp):
TTTCCAAATTCGCAATGCGATTATTACTATCGCAATGCGAT
Found at i:28115 original size:20 final size:21
Alignment explanation
Indices: 28090--28285 Score: 86
Period size: 21 Copynumber: 9.6 Consensus size: 21
28080 TTTTTCCAAT
*
28090 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
**
28110 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTAAGAAAA
* **
28131 TCGCAATGCG-A-TACTGACTA
1 TCGCAATGCGAATTA-AGAAAA
* *
28151 TCGCAATGCG-ATAATACAAAA
1 TCGCAATGCGAATTA-AGAAAA
* * **
28172 TCGCAATGCGATTTACG--TT
1 TCGCAATGCGAATTAAGAAAA
** * * * *
28191 TCGCGTTGCGATTTTCA-TAAT
1 TCGCAATGCGA-ATTAAGAAAA
* *
28212 TCGCAATGCGAA-TACGTAAA
1 TCGCAATGCGAATTAAGAAAA
* * *
28232 TCGTAACGCG-ATTAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
*
28252 TCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAATTAAGAAAA
28273 TCGCAATGCGAAT
1 TCGCAATGCGAAT
28286 ACGTAAATCG
Statistics
Matches: 129, Mismatches: 37, Indels: 19
0.70 0.20 0.10
Matches are distributed among these distances:
19 12 0.09
20 56 0.43
21 59 0.46
22 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:28303 original size:20 final size:20
Alignment explanation
Indices: 28090--28296 Score: 127
Period size: 20 Copynumber: 10.2 Consensus size: 20
28080 TTTTTCCAAT
*
28090 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATACGTAAA
** *
28110 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAA-TACGTAAA
*
28131 TCGCAATGCG-ATAC-TGACTA
1 TCGCAATGCGAATACGT-A-AA
*
28151 TCGCAATGCGATAATAC-AAAA
1 TCGCAATGCG--AATACGTAAA
* *
28172 TCGCAATGCGATTTACGT--T
1 TCGCAATGCGA-ATACGTAAA
** * * * *
28191 TCGCGTTGCGATTTTCATAAT
1 TCGCAATGCGA-ATACGTAAA
28212 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* * * *
28232 TCGTAACGCGATTAAGTAAA
1 TCGCAATGCGAATACGTAAA
* *
28252 TCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAA-TACGTAAA
28273 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
28293 TCGC
1 TCGC
28297 GTTGCGATAG
Statistics
Matches: 143, Mismatches: 33, Indels: 22
0.72 0.17 0.11
Matches are distributed among these distances:
19 17 0.12
20 67 0.47
21 54 0.38
22 1 0.01
23 4 0.03
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:28321 original size:21 final size:21
Alignment explanation
Indices: 28296--28366 Score: 76
Period size: 21 Copynumber: 3.4 Consensus size: 21
28286 ACGTAAATCG
28296 CGTTGCGATAGTCTACAGTGT
1 CGTTGCGATAGTCTACAGTGT
* * *
28317 CGTTGCGAT--TTTCCA-TTT
1 CGTTGCGATAGTCTACAGTGT
28335 CGCGTTGCGATAGTCTACAGTGT
1 --CGTTGCGATAGTCTACAGTGT
28358 CGTTGCGAT
1 CGTTGCGAT
28367 TTTCCATTTC
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
18 2 0.05
19 4 0.10
20 9 0.23
21 18 0.46
22 4 0.10
23 2 0.05
ACGTcount: A:0.15, C:0.21, G:0.27, T:0.37
Consensus pattern (21 bp):
CGTTGCGATAGTCTACAGTGT
Found at i:28324 original size:41 final size:41
Alignment explanation
Indices: 28293--28396 Score: 208
Period size: 41 Copynumber: 2.5 Consensus size: 41
28283 AATACGTAAA
28293 TCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATT
1 TCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATT
28334 TCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATT
1 TCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATT
28375 TCGCGTTGCGATAGTCTACAGT
1 TCGCGTTGCGATAGTCTACAGT
28397 AAATTAAAAA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 63 1.00
ACGTcount: A:0.15, C:0.22, G:0.25, T:0.38
Consensus pattern (41 bp):
TCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATT
Found at i:28342 original size:20 final size:20
Alignment explanation
Indices: 28317--28386 Score: 72
Period size: 20 Copynumber: 3.5 Consensus size: 20
28307 TCTACAGTGT
28317 CGTTGCGATTTTCCATTTCG
1 CGTTGCGATTTTCCATTTCG
* * *
28337 CGTTGCGATAGTCTACA-GT-G
1 CGTTGCGAT--TTTCCATTTCG
28357 TCGTTGCGATTTTCCATTTCG
1 -CGTTGCGATTTTCCATTTCG
28378 CGTTGCGAT
1 CGTTGCGAT
28387 AGTCTACAGT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
19 4 0.10
20 20 0.51
21 11 0.28
22 4 0.10
ACGTcount: A:0.13, C:0.23, G:0.24, T:0.40
Consensus pattern (20 bp):
CGTTGCGATTTTCCATTTCG
Found at i:29179 original size:20 final size:20
Alignment explanation
Indices: 29154--29248 Score: 95
Period size: 20 Copynumber: 4.6 Consensus size: 20
29144 ACTGTAGACT
29154 ATCGCAACGCGAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
* **
29174 ATCGCAA--CGACACTGTAGACT
1 ATCGCAACGCGA-AATG--GAAA
*
29195 ATCGCAACGCGAAAAGGAAA
1 ATCGCAACGCGAAATGGAAA
29215 ATCGCAACGCGCGAAATGGAAA
1 ATCGCAA--CGCGAAATGGAAA
29237 ATCGCAACGCGA
1 ATCGCAACGCGA
29249 TTTTGAACTA
Statistics
Matches: 60, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
18 3 0.05
19 3 0.05
20 21 0.35
21 9 0.15
22 21 0.35
23 3 0.05
ACGTcount: A:0.41, C:0.24, G:0.24, T:0.11
Consensus pattern (20 bp):
ATCGCAACGCGAAATGGAAA
Found at i:29184 original size:41 final size:41
Alignment explanation
Indices: 29104--29223 Score: 208
Period size: 41 Copynumber: 3.0 Consensus size: 41
29094 TTTTTAATTT
29104 ACTGTAGACTATCGCAA--CGAAATTGGAAAATCGCAACGAC
1 ACTGTAGACTATCGCAACGCGAAA-TGGAAAATCGCAACGAC
29144 ACTGTAGACTATCGCAACGCGAAATGGAAAATCGCAACGAC
1 ACTGTAGACTATCGCAACGCGAAATGGAAAATCGCAACGAC
*
29185 ACTGTAGACTATCGCAACGCGAAAAGGAAAATCGCAACG
1 ACTGTAGACTATCGCAACGCGAAATGGAAAATCGCAACG
29224 CGCGAAATGG
Statistics
Matches: 77, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
40 17 0.22
41 55 0.71
42 5 0.06
ACGTcount: A:0.40, C:0.23, G:0.22, T:0.15
Consensus pattern (41 bp):
ACTGTAGACTATCGCAACGCGAAATGGAAAATCGCAACGAC
Found at i:29230 original size:22 final size:22
Alignment explanation
Indices: 29195--29247 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
29185 ACTGTAGACT
29195 ATCGCAA--CGCGAAAAGGAAA
1 ATCGCAACGCGCGAAAAGGAAA
*
29215 ATCGCAACGCGCGAAATGGAAA
1 ATCGCAACGCGCGAAAAGGAAA
29237 ATCGCAACGCG
1 ATCGCAACGCG
29248 ATTTTGAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 7 0.23
22 23 0.77
ACGTcount: A:0.42, C:0.25, G:0.26, T:0.08
Consensus pattern (22 bp):
ATCGCAACGCGCGAAAAGGAAA
Found at i:30539 original size:30 final size:30
Alignment explanation
Indices: 30504--30580 Score: 73
Period size: 30 Copynumber: 2.5 Consensus size: 30
30494 AAAAGGTAGT
* * *
30504 AAAAATTAATAAAATAAAGAAGGTGAAATA
1 AAAAATAAATAAAATAAAGAAGATAAAATA
** *
30534 AAAAATAAATGCAATAAAGTAGATAAAATA
1 AAAAATAAATAAAATAAAGAAGATAAAATA
*
30564 AAACAGATAAAGAAAAT
1 AAA-A-ATAAATAAAAT
30581 GTAAGCATGA
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
30 27 0.75
31 1 0.03
32 8 0.22
ACGTcount: A:0.68, C:0.03, G:0.12, T:0.18
Consensus pattern (30 bp):
AAAAATAAATAAAATAAAGAAGATAAAATA
Found at i:30717 original size:19 final size:18
Alignment explanation
Indices: 30679--30717 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
30669 TAACAATACA
*
30679 AAAATAAAAATAGAAGAT
1 AAAATAAAAATAGAAAAT
*
30697 AAAATAAAATATATAAAAT
1 AAAATAAAA-ATAGAAAAT
30716 AA
1 AA
30718 TAAGTATATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (18 bp):
AAAATAAAAATAGAAAAT
Found at i:30800 original size:2 final size:2
Alignment explanation
Indices: 30795--30826 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
30785 GAATTAAAAG
30795 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
30827 CGATAGAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:31466 original size:37 final size:37
Alignment explanation
Indices: 31416--31514 Score: 137
Period size: 37 Copynumber: 2.7 Consensus size: 37
31406 GGATCCTATC
31416 TTTAGGAGTTTGAATCCTAGTAGGACTCTATCATATT
1 TTTAGGAGTTTGAATCCTAGTAGGACTCTATCATATT
* * ** * *
31453 TTTAGGAGTTTGAATCATAATAAAATTCTATCTTATT
1 TTTAGGAGTTTGAATCCTAGTAGGACTCTATCATATT
31490 TTTAGGAGTTTGAAT-CTAGTAGGAC
1 TTTAGGAGTTTGAATCCTAGTAGGAC
31515 GAAAAGGTGT
Statistics
Matches: 51, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
36 5 0.10
37 46 0.90
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.41
Consensus pattern (37 bp):
TTTAGGAGTTTGAATCCTAGTAGGACTCTATCATATT
Found at i:32991 original size:55 final size:54
Alignment explanation
Indices: 32913--33340 Score: 601
Period size: 55 Copynumber: 7.8 Consensus size: 54
32903 ATGTACTATA
* *
32913 TGTGC-AAACTAAAAAATTCATAATAAGTTTATGAATTTCCGTATAGGCACTATG
1 TGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTAT-GGCACTGTG
*
32967 TGTGCAAAACTAATAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTG
1 TGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTAT-GGCACTGTG
* *
33022 TGTGTAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCATATGGACACTGTG
1 TGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGG-CACTGTG
*
33077 TGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCTGTATGGACACTGTG
1 TGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGG-CACTGTG
* *
33132 TGTGCAAAACTTAGAAATTCATAATAAGTTTATGAATTTTCGTATGAGCACTGTG
1 TGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG-GCACTGTG
* *
33187 TGTGCAAAACTAAGAAATTCATAATAAGTTTATGTATTTCCTTATGGGCTA-TGTG
1 TGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTAT-GGC-ACTGTG
* * * * * *
33242 TGTGC-AAACTAAGAAACTCATAATAAGTTTATAAATTTTCGTATAGACAATTTG
1 TGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTAT-GGCACTGTG
* *
33296 TGTGCAAAATTAAGAAATTCATAATAAGTTTATGAATTTTCGTAT
1 TGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTAT
33341 TGGTAGTGGG
Statistics
Matches: 340, Mismatches: 27, Indels: 13
0.89 0.07 0.03
Matches are distributed among these distances:
53 1 0.00
54 51 0.15
55 285 0.84
56 3 0.01
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (54 bp):
TGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGCACTGTG
Found at i:34098 original size:17 final size:17
Alignment explanation
Indices: 34076--34126 Score: 102
Period size: 17 Copynumber: 3.0 Consensus size: 17
34066 TTAGTCATTA
34076 TGCTACTCAAGTAGTTC
1 TGCTACTCAAGTAGTTC
34093 TGCTACTCAAGTAGTTC
1 TGCTACTCAAGTAGTTC
34110 TGCTACTCAAGTAGTTC
1 TGCTACTCAAGTAGTTC
34127 CTAATGATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.35
Consensus pattern (17 bp):
TGCTACTCAAGTAGTTC
Found at i:45279 original size:21 final size:20
Alignment explanation
Indices: 45242--45281 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
45232 ATCAACATTT
*
45242 TTTGCATCTGCATTTGCATC
1 TTTGCATCTGCACTTGCATC
*
45262 TTTGCATTTTGCACTTGCAT
1 TTTGCA-TCTGCACTTGCAT
45282 TCCATTAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.47
Consensus pattern (20 bp):
TTTGCATCTGCACTTGCATC
Found at i:45913 original size:109 final size:109
Alignment explanation
Indices: 45720--45917 Score: 274
Period size: 109 Copynumber: 1.8 Consensus size: 109
45710 GACATTTGAA
* * * * *
45720 GAATGATGGGGCATTCTGATGCTAGTCAAGAAGAGATCTTTTCATCTATCATGAAGTTTTCCTAC
1 GAATGATGGAGCATTCTGATGCTAATCAAGAAAAGATCTTTGCATCTATCAGGAAGTTTTCCTAC
*
45785 ACATGCATTAAGAGTATTGTTTTGAACTCATTTTTGTTATGTTT
66 ACATGCATTAAGAGCATTGTTTTGAACTCATTTTTGTTATGTTT
*
45829 GAATGATGGAGCATTCTGATGCTAATCAAGAAAAGATCTTTGCATCT-TCCAGGAAGTTTTCTTA
1 GAATGATGGAGCATTCTGATGCTAATCAAGAAAAGATCTTTGCATCTAT-CAGGAAGTTTTCCTA
* * *
45893 TGA-TTGTATTAAGAGCATTGTTTTG
65 -CACATGCATTAAGAGCATTGTTTTG
45918 TTTGAACTCG
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
108 1 0.01
109 75 0.97
110 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (109 bp):
GAATGATGGAGCATTCTGATGCTAATCAAGAAAAGATCTTTGCATCTATCAGGAAGTTTTCCTAC
ACATGCATTAAGAGCATTGTTTTGAACTCATTTTTGTTATGTTT
Found at i:46825 original size:7 final size:7
Alignment explanation
Indices: 46815--46907 Score: 64
Period size: 7 Copynumber: 12.1 Consensus size: 7
46805 AAACAAAAGC
46815 AAAGAAA
1 AAAGAAA
46822 AAAGAGCAA
1 AAAGA--AA
46831 AACA-AAA
1 AA-AGAAA
46838 AAAGAGAA
1 AAAGA-AA
46846 ATGAAGCAAA
1 A--AAG-AAA
46856 AAAGAAA
1 AAAGAAA
46863 AAA-AAA
1 AAAGAAA
46869 GCAAAGAAA
1 --AAAGAAA
*
46878 AAAGAAG
1 AAAGAAA
*
46885 AAAGAAG
1 AAAGAAA
46892 AAAGAAAA
1 AAAG-AAA
46900 AAAGAAA
1 AAAGAAA
46907 A
1 A
46908 TGGATCAAGT
Statistics
Matches: 72, Mismatches: 2, Indels: 24
0.73 0.02 0.24
Matches are distributed among these distances:
6 4 0.06
7 37 0.51
8 15 0.21
9 8 0.11
10 7 0.10
11 1 0.01
ACGTcount: A:0.77, C:0.04, G:0.17, T:0.01
Consensus pattern (7 bp):
AAAGAAA
Found at i:46831 original size:14 final size:13
Alignment explanation
Indices: 46815--46896 Score: 51
Period size: 16 Copynumber: 5.9 Consensus size: 13
46805 AAACAAAAGC
46815 AAAGAAAAAAGAG
1 AAAGAAAAAAGAG
*
46828 CAAAACAAAAAAAGAG
1 --AAA-GAAAAAAGAG
*
46844 AAATGAAGCAAAAAAG
1 AAA-GAA--AAAAGAG
*
46860 AAA-AAAAAAG-C
1 AAAGAAAAAAGAG
46871 AAAGAAAAAAGAAG
1 AAAGAAAAAAG-AG
*
46885 AAAGAAGAAAGA
1 AAAGAAAAAAGA
46897 AAAAAAGAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 14
0.71 0.11 0.19
Matches are distributed among these distances:
11 3 0.06
12 11 0.21
13 1 0.02
14 17 0.32
15 3 0.06
16 18 0.34
ACGTcount: A:0.76, C:0.05, G:0.18, T:0.01
Consensus pattern (13 bp):
AAAGAAAAAAGAG
Found at i:46870 original size:18 final size:18
Alignment explanation
Indices: 46835--46902 Score: 59
Period size: 18 Copynumber: 3.8 Consensus size: 18
46825 GAGCAAAACA
* **
46835 AAAAAAGAGAAATGAAGC
1 AAAAAAGAAAAAAAAAGC
46853 AAAAAAGAAAAAAAAAGC
1 AAAAAAGAAAAAAAAAGC
*
46871 AAAGAAA-AAAGAAGAAAG-
1 AAA-AAAGAAA-AAAAAAGC
*
46889 AAGAAAGAAAAAAA
1 AAAAAAGAAAAAAA
46903 GAAAATGGAT
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
17 6 0.15
18 26 0.63
19 9 0.22
ACGTcount: A:0.78, C:0.03, G:0.18, T:0.01
Consensus pattern (18 bp):
AAAAAAGAAAAAAAAAGC
Found at i:46881 original size:22 final size:22
Alignment explanation
Indices: 46853--46907 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
46843 GAAATGAAGC
46853 AAAAAAGAAAAAAAAAGCAAAG-
1 AAAAAAGAAAAAAAAAG-AAAGA
* *
46875 AAAAAAGAAGAAAGAAGAAAGA
1 AAAAAAGAAAAAAAAAGAAAGA
46897 AAAAAAGAAAA
1 AAAAAAGAAAA
46908 TGGATCAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 4 0.14
22 25 0.86
ACGTcount: A:0.82, C:0.02, G:0.16, T:0.00
Consensus pattern (22 bp):
AAAAAAGAAAAAAAAAGAAAGA
Found at i:48197 original size:81 final size:81
Alignment explanation
Indices: 48062--48414 Score: 512
Period size: 81 Copynumber: 4.4 Consensus size: 81
48052 CTATTCTAAA
* *
48062 ATAAAAGACTAAATGCCTAACTGCT-CATTTGGTAGAAAA-GTGTCAATAATGCAAGTTAGATGA
1 ATAAAAGACTAAATGCCTAACTG-TGCATTTGGCA-AAAAGGTGCCAATAATGCAAGTTAGATGA
*
48125 AAGGTTAAATGCCTTTAG
64 AAGGTTAAATGCCTTTGG
* *
48143 ATAAAAGAATAAATGCCTAACTGTGCATTTGGCAAAAAGGTACCAATAATGCAAGTTAGATGAAA
1 ATAAAAGACTAAATGCCTAACTGTGCATTTGGCAAAAAGGTGCCAATAATGCAAGTTAGATGAAA
* *
48208 GGATAAATGTCTTTGG
66 GGTTAAATGCCTTTGG
* * *
48224 ATAAAAGACTAAATGCCTAACTGTGTATTTGGCAGAATGGTGCCAATAATGCAAGTTAGATGAAA
1 ATAAAAGACTAAATGCCTAACTGTGCATTTGGCAAAAAGGTGCCAATAATGCAAGTTAGATGAAA
48289 GGTTAAATGCCTTTGG
66 GGTTAAATGCCTTTGG
* * * * *
48305 ATAAAAGACTAAATGCCCAACTGTGCACTTGGTAGAAAGGTGTCAATAATGCAAGTTAGATGAAA
1 ATAAAAGACTAAATGCCTAACTGTGCATTTGGCAAAAAGGTGCCAATAATGCAAGTTAGATGAAA
*
48370 GGTTAAACGCCTTTGG
66 GGTTAAATGCCTTTGG
* *
48386 ATAAAAGACTAAATGCATAACGGTGCATT
1 ATAAAAGACTAAATGCCTAACTGTGCATT
48415 ACCGACATGA
Statistics
Matches: 245, Mismatches: 25, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
80 5 0.02
81 240 0.98
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.27
Consensus pattern (81 bp):
ATAAAAGACTAAATGCCTAACTGTGCATTTGGCAAAAAGGTGCCAATAATGCAAGTTAGATGAAA
GGTTAAATGCCTTTGG
Found at i:48445 original size:45 final size:45
Alignment explanation
Indices: 48396--48574 Score: 268
Period size: 45 Copynumber: 4.0 Consensus size: 45
48386 ATAAAAGACT
*
48396 AAATGCATAACGGTGCATTACCGACATGAAAGGATGCCATAAATG
1 AAATGCATAACGGTGCATTATCGACATGAAAGGATGCCATAAATG
* *
48441 AAATGCATAAAGGTGCATTATCGGCATGAAAGGATGCCATAAATG
1 AAATGCATAACGGTGCATTATCGACATGAAAGGATGCCATAAATG
* * * *
48486 AAATGCATAACGGTGCATTATCGGCTTGAAATGATGTCATAAATG
1 AAATGCATAACGGTGCATTATCGACATGAAAGGATGCCATAAATG
* * *
48531 AAATGCATAACAGTGCATTATCGATATGAAAAGATGCCATAAAT
1 AAATGCATAACGGTGCATTATCGACATGAAAGGATGCCATAAAT
48575 TAAAATAACG
Statistics
Matches: 121, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 121 1.00
ACGTcount: A:0.40, C:0.15, G:0.21, T:0.24
Consensus pattern (45 bp):
AAATGCATAACGGTGCATTATCGACATGAAAGGATGCCATAAATG
Found at i:51746 original size:81 final size:81
Alignment explanation
Indices: 51603--51857 Score: 352
Period size: 81 Copynumber: 3.2 Consensus size: 81
51593 ACTGTCTAAA
* * * *
51603 ATAAAAGA-TAAATGCCTAACTATGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTATATGAAA
1 ATAAAAGACTAAATGTCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAATTAGATGAAA
* **
51667 TGTTAAATGAATTTGG
66 GGTTAAATGCCTTTGG
* * *
51683 ATAAAAGACTAAATGTCTAACTGTCCATTTGGCATAAAGGTGTCAATAATGCAAATTAGATGAAA
1 ATAAAAGACTAAATGTCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAATTAGATGAAA
51748 GGTTAAATGCCTTTGG
66 GGTTAAATGCCTTTGG
* * *
51764 ATAAAAGACTAAAAGTCTAACTGTGCATTTGGAAGAAAGATGCCAATAATG-AAAGTTAGATGAA
1 ATAAAAGACTAAATGTCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAA-TTAGATGAA
51828 AGGTTAAATGCCTTTGG
65 AGGTTAAATGCCTTTGG
* *
51845 AAAAAATACTAAA
1 ATAAAAGACTAAA
51858 CGCATAAGGG
Statistics
Matches: 155, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
80 11 0.07
81 144 0.93
ACGTcount: A:0.42, C:0.11, G:0.20, T:0.27
Consensus pattern (81 bp):
ATAAAAGACTAAATGTCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAATTAGATGAAA
GGTTAAATGCCTTTGG
Found at i:51923 original size:45 final size:45
Alignment explanation
Indices: 51859--52217 Score: 520
Period size: 45 Copynumber: 8.0 Consensus size: 45
51849 AATACTAAAC
*
51859 GCATAAGGGTGCATTATCGGCATGAAAGGATGCCATAAATGAAAT
1 GCATAACGGTGCATTATCGGCATGAAAGGATGCCATAAATGAAAT
* * *
51904 GCATAACAGTGCATTATCGGCATGAAAGGATTCTATAAATGAAAT
1 GCATAACGGTGCATTATCGGCATGAAAGGATGCCATAAATGAAAT
** * *
51949 GTGTAACGGTGCATTATCAGCATGAAATGATGCCATAAATGAAAT
1 GCATAACGGTGCATTATCGGCATGAAAGGATGCCATAAATGAAAT
* * * * *
51994 GCATAATGATGCATTATCGACATGAAAGGGTACCATAAATGAAAT
1 GCATAACGGTGCATTATCGGCATGAAAGGATGCCATAAATGAAAT
* * * *
52039 ACATAACGATGCATTATCGACATGAAAGGGTGCCATAAATGAAAT
1 GCATAACGGTGCATTATCGGCATGAAAGGATGCCATAAATGAAAT
* * *
52084 GCATAACGGTGCATTATTGACATGAAAGGATGTCATAAATGAAAT
1 GCATAACGGTGCATTATCGGCATGAAAGGATGCCATAAATGAAAT
*
52129 GCATAACGGTGCATTATCGGCATGAAAGAATGCCATAAATGAAAT
1 GCATAACGGTGCATTATCGGCATGAAAGGATGCCATAAATGAAAT
*
52174 GCATAACAGTGCATTATCGGCATGAAAGGATGCCATAAATGAAA
1 GCATAACGGTGCATTATCGGCATGAAAGGATGCCATAAATGAAA
52218 ATAATGAATA
Statistics
Matches: 280, Mismatches: 34, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 280 1.00
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.24
Consensus pattern (45 bp):
GCATAACGGTGCATTATCGGCATGAAAGGATGCCATAAATGAAAT
Found at i:55419 original size:66 final size:67
Alignment explanation
Indices: 55349--55475 Score: 229
Period size: 67 Copynumber: 1.9 Consensus size: 67
55339 ATTGATAACA
* *
55349 TTTGAGATTGTTTTTCTTGAAACAAA-TTTTGTCTCGCTTGAGACAGTTTCTCTTGAAACATGAA
1 TTTGAGATTGTTTCTCTCGAAACAAAGTTTTGTCTCGCTTGAGACAGTTTCTCTTGAAACATGAA
55413 CC
66 CC
55415 TTTGAGATTGTTTCTCTCGAAACAAAGTTTTGTCTCGCTTGAGACAGTTTCTCTTGAAACA
1 TTTGAGATTGTTTCTCTCGAAACAAAGTTTTGTCTCGCTTGAGACAGTTTCTCTTGAAACA
55476 AAGTTTTATC
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
66 24 0.41
67 34 0.59
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.40
Consensus pattern (67 bp):
TTTGAGATTGTTTCTCTCGAAACAAAGTTTTGTCTCGCTTGAGACAGTTTCTCTTGAAACATGAA
CC
Found at i:55563 original size:88 final size:89
Alignment explanation
Indices: 55397--55565 Score: 268
Period size: 89 Copynumber: 1.9 Consensus size: 89
55387 TGAGACAGTT
* * ** * *
55397 TCTCTTGAAACATGAACCTTTGAGATTGTTTCTCTCGAAACAAAGTTTTGTCTCGCTTGAGACAG
1 TCTCTTAAAACATAAACAATTGAGATTGTTTCCCTCGAAACAAAGTTTTGTCTCGCTTGAGACAA
55462 TTTCTCTTGAAACAAAGTTTTATC
66 TTTCTCTTGAAACAAAGTTTTATC
*
55486 TCTCTTAAAACATAAACAATTGAGATTGTTTCCCTTGAAACAAA-TTTTGTCTCGCTTGAGACAA
1 TCTCTTAAAACATAAACAATTGAGATTGTTTCCCTCGAAACAAAGTTTTGTCTCGCTTGAGACAA
55550 TTTCTCTTGAAACAAA
66 TTTCTCTTGAAACAAA
55566 TTATCCCTAA
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
88 35 0.48
89 38 0.52
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (89 bp):
TCTCTTAAAACATAAACAATTGAGATTGTTTCCCTCGAAACAAAGTTTTGTCTCGCTTGAGACAA
TTTCTCTTGAAACAAAGTTTTATC
Found at i:55892 original size:138 final size:139
Alignment explanation
Indices: 55562--55977 Score: 532
Period size: 139 Copynumber: 3.0 Consensus size: 139
55552 TCTCTTGAAA
*
55562 CAAATTATCCCTAAAGACGGCTAGACGTCCTCATCACGTAGGAACAATGTCGTCCATCGACCAGA
1 CAAATTATCCCTAAAGACGGCTAGACGTCCTCATCACGTAGGAACAATGTCGTCCATCGACCAAA
* * * * * *
55627 TCTCCTCATCATGTAGGAGCACCATCATCCTTAGATAATCAGACTTCCTCATCACATAGAAACCA
66 TCTCCTCATCACGTAGGAGCAACGTCATCCTTAGATAATCAGACTTCCTCATCACGTAGAAATCG
55692 TGTTATCTC
131 TGTTATCTC
* * *
55701 CAAATTATCCCTAAAGACGGCTAGATC-TCCTTATCTCGTAGGAACAATGTCGTCCACCGACCAA
1 CAAATTATCCCTAAAGACGGCTAGA-CGTCCTCATCACGTAGGAACAATGTCGTCCATCGACCAA
* ** * *
55765 ATCTCCTCATCACCTAGGAGCAGTGTCATCCTAAGATAATC-GACTTCCTCATAACGTAGAAATC
65 ATCTCCTCATCACGTAGGAGCAACGTCATCCTTAGATAATCAGACTTCCTCATCACGTAGAAATC
55829 GTGTTATCTC
130 GTGTTATCTC
* ** * *
55839 TAAATTATCCCTAAAGACAACTAGACGTCCTCATCACATAAGAACAATGTCGTCCATCGACCAGA
1 CAAATTATCCCTAAAGACGGCTAGACGTCCTCATCACGTAGGAACAATGTCGTCCATCGACCA-A
* * * * * * * *
55904 A-CTACTCATCACGTATGAGCAACGCCATCCTTAGATAACCTGACTTCCTCTTCACGTAGGAATT
65 ATCTCCTCATCACGTAGGAGCAACGTCATCCTTAGATAATCAGACTTCCTCATCACGTAGAAATC
*
55968 GCGTTATCTC
130 GTGTTATCTC
55978 AAAAATCATC
Statistics
Matches: 238, Mismatches: 35, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
137 1 0.00
138 113 0.47
139 123 0.52
140 1 0.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (139 bp):
CAAATTATCCCTAAAGACGGCTAGACGTCCTCATCACGTAGGAACAATGTCGTCCATCGACCAAA
TCTCCTCATCACGTAGGAGCAACGTCATCCTTAGATAATCAGACTTCCTCATCACGTAGAAATCG
TGTTATCTC
Found at i:58381 original size:16 final size:17
Alignment explanation
Indices: 58352--58383 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
58342 TAACACATAC
58352 CAATTTTATCTTAAAAA
1 CAATTTTATCTTAAAAA
58369 CAATTTT-TCTTAAAA
1 CAATTTTATCTTAAAA
58384 TTGTTTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (17 bp):
CAATTTTATCTTAAAAA
Found at i:58842 original size:20 final size:20
Alignment explanation
Indices: 58806--58843 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
58796 AAATGTTGTA
*
58806 AAAATATATTTTTATAAAAT
1 AAAATATATTTTGATAAAAT
58826 AAAAT-TATTTTAGATAAA
1 AAAATATATTTT-GATAAA
58844 TTTTAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (20 bp):
AAAATATATTTTGATAAAAT
Found at i:59912 original size:31 final size:32
Alignment explanation
Indices: 59877--59965 Score: 94
Period size: 31 Copynumber: 2.8 Consensus size: 32
59867 CTAATGGAGC
* *
59877 ACTTTGGGGCCTTAAAGCCTATCCAA-GGAAT
1 ACTTTGGGGCCTCAAAGCCTACCCAATGGAAT
* *
59908 ACTTTGGGGCCTCAGAGCCTACCCAATGGAGT
1 ACTTTGGGGCCTCAAAGCCTACCCAATGGAAT
*
59940 ACCTTT-GGGCCT-AAGAGCATACCCAA
1 A-CTTTGGGGCCTCAA-AGCCTACCCAA
59966 GGGAGTATCT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
31 24 0.49
32 21 0.43
33 4 0.08
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (32 bp):
ACTTTGGGGCCTCAAAGCCTACCCAATGGAAT
Found at i:59957 original size:32 final size:32
Alignment explanation
Indices: 59859--59994 Score: 118
Period size: 32 Copynumber: 4.3 Consensus size: 32
59849 TTGGGAGTAG
* * *
59859 GAGCCAACCTAATGGAGCACTTTGGGGCCTTAA
1 GAGCCTACCCAATGGAGTACTTTGGGGCC-TAA
* * *
59892 -AGCCTATCCAA-GGAATACTTTGGGGCCTCA
1 GAGCCTACCCAATGGAGTACTTTGGGGCCTAA
59922 GAGCCTACCCAATGGAGTACCTTT-GGGCCTAA
1 GAGCCTACCCAATGGAGTA-CTTTGGGGCCTAA
* * *
59954 GAGCATACCCAAGGGAGTA-TCTCGGGGCCTAA
1 GAGCCTACCCAATGGAGTACT-TTGGGGCCTAA
* *
59986 AAACCTACC
1 GAGCCTACC
59995 TAAGAGTCAC
Statistics
Matches: 83, Mismatches: 15, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
30 3 0.04
31 25 0.30
32 51 0.61
33 4 0.05
ACGTcount: A:0.28, C:0.27, G:0.25, T:0.20
Consensus pattern (32 bp):
GAGCCTACCCAATGGAGTACTTTGGGGCCTAA
Found at i:60889 original size:314 final size:315
Alignment explanation
Indices: 60319--60916 Score: 1045
Period size: 314 Copynumber: 1.9 Consensus size: 315
60309 TTTTAGATAT
*
60319 GTGATCCATATGAAAAGAGTTCGATTATTAATAGATCTAATCAAATATTTAGGAATTGACGCTTC
1 GTGATCCATATGAAAAGAGTTCGATTACTAATAGATCTAATCAAATATTTAGGAATTGACGCTTC
*
60384 AAGACCATATAGGATTCTTGTGTATCAGGAAAGTATTCAGGAACCTTTACATCAAAATAATTTAA
66 AAGACCATATAGGATTCGTGTGTATCAGGAAAGTATTCAGGAACCTTTACATCAAAATAATTTAA
* * *
60449 GATTCAGATATAACTAGAGTGATTCCATTATTTAGGCCATAAGGGGCATTTTAGTCATTTTTCTA
131 GATTCAGATATAACTAGAGTGATTCCATTATTTAGGCCATAAGGGGCATTTCAATCATTTTGCTA
*
60514 CTAGGAAAATCCTTAGTAAAATTAATCGAATAAGGGTAAAATGATAATTCACAATATGCCAAATT
196 CTAGGAAAATCCTTAGTAAAATTAACCGAATAAGGGTAAAATGATAATTCACAATATGCCAAATT
60579 TATATCAAATCCTCAGGATTTTGATGCTTATGTAAATTGATCGGATTTCATATAC
261 TATATCAAATCCTCAGGATTTTGATGCTTATGTAAATTGATCGGATTTCATATAC
* * *
60634 GTGATCCATATGAAAAGAGTTCGATTACTAATAGATCTAATCAAATATTTAGG-ATTGATGTTTG
1 GTGATCCATATGAAAAGAGTTCGATTACTAATAGATCTAATCAAATATTTAGGAATTGACGCTTC
*
60698 AAGACCATATAGGATTCGTGTGTATCAGGAAAGTATTCAGGAACCTTTACATCAGAATAATTTAA
66 AAGACCATATAGGATTCGTGTGTATCAGGAAAGTATTCAGGAACCTTTACATCAAAATAATTTAA
60763 GATTCAGATATAACTAGAGTGATTCCATTATTTAGGCCATAAGGGGCATTTCAATCATTTTGCTA
131 GATTCAGATATAACTAGAGTGATTCCATTATTTAGGCCATAAGGGGCATTTCAATCATTTTGCTA
* *** *
60828 CTAGGAGAATCCTTAGTAAAATTAACCGAATAAGGGTAAAATGATAATTTGTAGTATGCCAAATT
196 CTAGGAAAATCCTTAGTAAAATTAACCGAATAAGGGTAAAATGATAATTCACAATATGCCAAATT
*
60893 TATATCAAATCTTCAGGATTTTGA
261 TATATCAAATCCTCAGGATTTTGA
60917 GTCAAATTGA
Statistics
Matches: 267, Mismatches: 16, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
314 215 0.81
315 52 0.19
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.34
Consensus pattern (315 bp):
GTGATCCATATGAAAAGAGTTCGATTACTAATAGATCTAATCAAATATTTAGGAATTGACGCTTC
AAGACCATATAGGATTCGTGTGTATCAGGAAAGTATTCAGGAACCTTTACATCAAAATAATTTAA
GATTCAGATATAACTAGAGTGATTCCATTATTTAGGCCATAAGGGGCATTTCAATCATTTTGCTA
CTAGGAAAATCCTTAGTAAAATTAACCGAATAAGGGTAAAATGATAATTCACAATATGCCAAATT
TATATCAAATCCTCAGGATTTTGATGCTTATGTAAATTGATCGGATTTCATATAC
Found at i:62323 original size:18 final size:18
Alignment explanation
Indices: 62292--62330 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
62282 GTCAAAGTTA
*
62292 AAGTTTACGACTCGACTC
1 AAGTTAACGACTCGACTC
*
62310 AAGTTAACGGCTCGACTC
1 AAGTTAACGACTCGACTC
62328 AAG
1 AAG
62331 CCGCTGTAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.23
Consensus pattern (18 bp):
AAGTTAACGACTCGACTC
Found at i:65433 original size:25 final size:26
Alignment explanation
Indices: 65401--65458 Score: 84
Period size: 25 Copynumber: 2.3 Consensus size: 26
65391 ATGACCTCTA
65401 AAAAGTTGCATTA-TGTCTACAAACT-
1 AAAAGTTGCATTATTG-CTACAAACTG
*
65426 AAAAGTTGCATTATTGCTGCAAACTG
1 AAAAGTTGCATTATTGCTACAAACTG
65452 AAAAGTT
1 AAAAGTT
65459 ACTGAAATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 21 0.70
26 9 0.30
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.31
Consensus pattern (26 bp):
AAAAGTTGCATTATTGCTACAAACTG
Found at i:69554 original size:25 final size:23
Alignment explanation
Indices: 69521--69566 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
69511 ATTTTTAAAC
*
69521 TAAGTTAATAATAAAATATATTTAA
1 TAAGGTAAT-ATAAAA-ATATTTAA
69546 TAAGGTAATATAAAAATATTT
1 TAAGGTAATATAAAAATATTT
69567 CTCAAAGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (23 bp):
TAAGGTAATATAAAAATATTTAA
Done.