genome.fa.s6281.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006281.1 Hibiscus syriacus cultivar Beakdansim tig00014992_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114179

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1796--1834	19	2.1	19	90	9	62	33	5	7	53	1.51
4205--4253	19	2.6	19	96	0	89	32	2	10	55	1.45
4698--5260	201	2.8	200	88	2	835	37	15	13	33	1.87
5585--5613	15	1.9	15	100	0	58	27	37	6	27	1.82
5950--5985	2	18.0	2	100	0	72	50	0	0	50	1.00
6792--6825	12	2.8	12	90	0	50	41	2	32	23	1.69
8200--8238	18	2.2	18	90	0	60	33	5	15	46	1.68
9482--10664	198	6.0	198	86	5	1343	38	14	15	30	1.88
9482--10664	396	3.0	391	84	6	1502	38	14	15	30	1.88
12220--12267	18	2.6	18	86	3	60	35	4	8	52	1.51
15002--15520	200	2.6	200	82	4	611	41	14	13	30	1.84
15590--15652	23	2.8	23	85	2	74	36	14	4	44	1.66
16075--16102	14	2.0	14	100	0	56	35	7	35	21	1.81
17372--17410	15	2.6	15	100	0	78	12	66	12	7	1.43
31192--31231	18	2.4	17	88	12	57	72	17	10	0	1.11
32669--32737	13	4.7	16	69	20	60	37	15	23	23	1.93
32669--32752	29	2.9	29	90	0	141	38	16	23	21	1.93
38264--38326	20	3.2	20	100	0	126	19	4	30	46	1.70
49486--49560	38	2.0	38	82	10	91	57	2	0	40	1.13
49889--49923	16	2.2	16	94	0	61	25	22	20	31	1.98
50495--50522	11	2.5	11	100	0	56	25	0	0	75	0.81
50486--50559	35	2.1	35	80	9	80	29	0	5	64	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50933--50983	19	2.6	20	90	3	77	43	23	17	15	1.88
50933--51147	20	10.6	20	78	10	98	40	20	21	18	1.92
51058--51145	40	2.2	40	95	0	158	36	17	25	21	1.94
51215--51293	6	13.2	6	100	0	158	34	49	16	0	1.46
51974--52076	5	19.6	5	98	1	161	0	19	56	24	1.42
52152--52195	20	2.2	20	91	0	70	11	18	15	54	1.70
52182--52488	20	15.6	20	72	13	127	18	23	17	40	1.91
52184--52407	40	5.7	40	75	14	216	20	24	16	37	1.93
52207--52344	73	1.9	70	86	4	195	18	27	16	36	1.93
54246--54307	32	1.9	32	93	0	106	40	11	25	22	1.87
56765--56816	20	2.6	20	96	0	95	38	26	13	21	1.90
56806--56904	21	4.8	20	70	6	63	37	23	18	21	1.94
56871--57064	20	9.6	20	81	5	221	35	25	19	19	1.95
56871--57064	60	3.2	60	83	0	253	35	25	19	19	1.95
57445--57515	33	2.2	33	94	0	124	11	23	16	47	1.79
57595--57650	20	2.8	20	91	2	85	46	17	23	12	1.82
57634--57690	14	3.7	14	75	20	60	42	22	26	8	1.83
57614--57695	33	2.5	33	92	6	130	43	21	25	8	1.81
57804--57858	25	2.2	24	78	15	58	20	9	18	52	1.71
59433--59811	93	4.1	93	97	2	728	21	12	18	46	1.82
59854--59982	19	7.3	19	75	17	125	45	28	17	8	1.77
59890--59982	33	2.8	32	91	4	150	46	27	18	7	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59854--59982	52	2.5	52	74	14	140	45	28	17	8	1.77
59978--60111	19	7.6	19	75	16	126	11	19	23	45	1.82
60000--60056	14	3.7	14	77	20	60	10	21	22	45	1.82
59983--60075	33	2.8	33	95	0	168	10	20	21	47	1.80
61913--61981	38	1.9	36	88	11	106	27	1	15	55	1.50
62091--62192	19	5.6	19	84	13	151	44	17	23	14	1.86
62221--62473	19	14.4	19	79	15	287	15	18	18	47	1.82
62199--62356	52	2.9	52	92	4	244	16	18	17	48	1.82
62221--62445	52	4.2	52	86	8	239	15	19	17	48	1.82
62240--62473	33	6.8	33	80	12	190	14	18	18	47	1.83
64882--64906	12	2.1	12	100	0	50	0	28	0	72	0.86
65080--65126	24	2.0	24	87	8	69	38	21	14	25	1.92
65794--66157	20	18.5	20	83	7	404	20	18	25	34	1.96
70023--70072	21	2.4	21	86	0	64	28	18	24	30	1.97
71479--71551	29	2.5	29	82	4	76	20	38	26	15	1.92
71782--71867	29	3.0	29	84	0	109	13	29	39	17	1.88
73066--73122	21	2.7	21	86	8	71	68	0	7	24	1.14
74677--74744	31	2.3	29	84	5	82	45	4	4	45	1.43
74646--74780	65	2.1	63	83	8	164	45	4	3	46	1.41
74710--75046	36	9.2	37	77	13	263	43	6	2	46	1.43
74744--74870	67	1.9	66	87	7	186	41	6	3	48	1.47
74631--75033	103	3.8	101	77	13	327	44	6	2	46	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80718--80784	32	2.1	32	94	0	116	20	22	16	40	1.91
85857--85899	17	2.5	17	96	0	77	27	34	16	20	1.94
93910--93960	26	2.0	26	96	0	93	33	29	15	21	1.94
94793--95013	81	2.7	81	88	1	318	27	24	12	34	1.92
98458--98508	23	2.3	23	83	6	70	21	21	39	17	1.93
102398--102450	22	2.4	22	96	0	97	26	16	0	56	1.41
104286--104618	68	4.9	68	89	0	470	30	24	13	32	1.93
104285--104618	135	2.5	136	88	2	483	30	23	13	32	1.93
104829--105048	55	4.0	55	89	4	318	31	19	13	35	1.90
106691--106739	16	2.9	16	84	9	53	51	26	0	22	1.49
108694--108756	23	2.7	23	90	0	99	30	19	28	22	1.98
112532--112571	21	1.9	21	89	0	62	30	7	5	57	1.48

Tables:   1

The End!